Index (MIPAV API Documentation)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes All Packages

A

a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
a - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.Gamma
a - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
a - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
a - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
a - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
a - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
a - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
a() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
A - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
A - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
A - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
A - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < observation mean
A - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Affine
A - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
A - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
A - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
A() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
A_array - Variable in class gov.nih.mipav.model.algorithms.dataStruct
a_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the alpha value of this pixel at its current position.
A_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: This is an x clip slice.
a_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
A_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
A_nfmt - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
a_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_offset - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a_squared_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a0 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
a0 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
a0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
a0Num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
a0Num - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
a1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
a1 - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
A1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a11 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse: < center y-coordinate
a11 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a12 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse: <
a12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a13 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
A1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a21 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a23 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a33 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
aaAccurateSmoothing - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
Aac - gov.nih.mipav.model.file.MetadataExtractor.FileType
AAM_MAX2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function with two given double values.
AAM_MAX3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function for three given double values.
AAM_MIN2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for two given double values.
AAM_MIN3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for three given double values.
aam_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
aaMask - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aamc - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
aamc() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.aamc
aamClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMdef - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
AAMdef() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
aamGroupRename() - Method in class gov.nih.mipav.view.ViewJFrameImage
aamGroups() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMinitialization() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Atlas based AAM segmentation.
AAMLoadAnalyzerSynthesizer(DataInputStream, CAAMReferenceFrame) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyzer/Synthesizer loader.
AAMLoadTransferFunction(DataInputStream, CAAMModel) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: The function loads a transfer function from a stream, instantiates the correct concrete class and returns a base class pointer.
aamMLClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
AAMRound(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: Round up function
aaPatch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchX - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchY - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
abbrev - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset labels.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abort - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: If true stop processing.
abort() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Aborts an association and closes the socket.
AbortingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.AbortingIterationCallback
abortRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Abort connection request.
about() - Method in class gov.nih.mipav.view.ViewJFrameImage: Makes an aboutDialog box and displays information of the image plane presently being displayed.
about() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about MIPAV, with MIPAV as the title.
about(int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase: Makes an aboutDialog box that displays information about the image slice.
about(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a fairly simple plain-text viewing box.
ABOUT_MIPAV - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Access about mipav panel
aboutDataProvenance() - Method in class gov.nih.mipav.view.ViewUserInterface: Displays the system data provenance using a simple dialog with table and jtextarea (for current selection).
aboutJava() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about the version of Java.
aboutPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
ABOVE - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
aboveMedian - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: factor above median at which edge values are taken to zero.
aboveMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The factor above which second stage edge erosion occurs.
abs() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the absolute value of this value.
Abs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes the absolute valueof each element.
abs1(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
ABS1(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Abs2Rel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative.
Abs2Rel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative by using the hostimage.
absBiggest(double, double, double) - Method in class gov.nih.mipav.model.file.FileIO: Helper method for finding biggest (absolute value) of three numbers.
absButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: abscissa of convergence of the Laplace transform.
absEps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
absEps - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: absolute accuracy requested.
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.ODE
abserr - Variable in class gov.nih.mipav.model.algorithms.ODEEP
absGtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absGw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absMinThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: pixel does not get remapped when pixel is below threshold.
ABSOLUTE_VALUE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ABSOLUTE_VALUE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Method that goes to the absolute voxel coordinate that is entered
absoluteGoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position:.
absoluteLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position values:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position values:.
absolutePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: JPanel containing the absoulte position labels:.
absolutePanel - Variable in class gov.nih.mipav.view.ViewJFrameBase: JPanel containing the absoulte position labels:.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: total number of voxels at a particular nonzero level.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: total number of id voxels in true image.
absoluteValue(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: absolute value
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileAnalyze: Take the absolute value of image.
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI: Absolute value of image.
absoluteWindowLevelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
absoluteXLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteXTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteYLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteYTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteZLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteZTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
abssq(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
absstp - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
absSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Abstract syntax object.
abstol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
abstol - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
aButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
AC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
ac_cur_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbl - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_huff_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AC_STAT_BINS - Static variable in class gov.nih.mipav.model.file.libjpeg
ac_stats - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
ac_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
ac1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
acc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
acc_online_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ACC_ONLINE_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
accel - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
accept(File) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: FileFilter override.
accept(File) - Method in class gov.nih.mipav.view.ViewImageFileFilter: One of the overrides to FileFilter.
accept(String) - Method in class gov.nih.mipav.view.ViewImageFileFilter: Checks if extension matches what is accepted for the filter type.
acceptedChars - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
acceptedSocket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Socket used to receive the data.
acceptorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
acceptorRun - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: If acceptorRun is true, run on 3 images with acceptor dye only.
acceptorRun - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
access_virt_barray(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_barray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray8(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray9to12(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
accessionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
accessLock - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
accessoryPanel - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accumulate - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulate_hom - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulated_candidate_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulated_reference_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulateFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
accumulateFunction(int, SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM
accur() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
accuracy - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
aCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
acheck(LSQR.lsqr_solver_ez, int, int, RandomAccessFile, double, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
acins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
acins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
ackleyNum - Variable in class gov.nih.mipav.model.algorithms.NelderMead
AclipPlanePts - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane four corners points.
aClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean visibility values for x, y, z, arbitrary clipping slider frames.
ACOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ACOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
acos() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1 < x < 1, arccos(x) = PI/2 - arcsin(x)
ACPC_ANTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_INFERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_LATERAL - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_POSTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_SUPERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
acpcAC - Variable in class gov.nih.mipav.model.file.FileAfni: Anterior Comissure in acpc space.
acpcAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Anterior Comissure in acpc space.
acpcACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Image dimensions.
acpcDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
ACPCGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ACPCImage - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcMax - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMax - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMaxCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMaxFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcMaxPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMinCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMinFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: TLRC Specific info.
acpcMinPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Posterior Comissure in acpc space.
acpcPC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcPCCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Voxel resolution (cubic).
acpcRes - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResField - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcResLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResOrg - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResText - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcToOrig(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToOrig(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToTlrc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acpcToTlrc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acqGradMat - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
acquiredCardiacCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredCardiacCyclesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDurationIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquisitionBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AcquisitionDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
acquisitionMatrix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionMode - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionOrientationField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
acquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
AcquisitionTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
actInt(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
action - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
action - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: action describing the event
action - Variable in class gov.nih.mipav.model.scripting.ParsedActionLine: The String representing the action which should be taken when this line is executed.
action - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
action - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Current notes for the node.
ActionAdapter() - Constructor for class gov.nih.mipav.view.MipavUtil.ActionAdapter: Creates a new ActionAdapter object.
ActionBase - Class in gov.nih.mipav.model.scripting.actions: A base class for all non-algorithmic (not JDialog*) script actions.
ActionBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionBase
ActionChangeEndianess - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's endianess
ActionChangeEndianess() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeEndianess(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Main constructor with parameters for changing the endianess
ActionChangeModality - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's modality
ActionChangeModality() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeModality(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Main constructor with parameters for changing the modality
ActionChangeName - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the name of an image.
ActionChangeName() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeName(ModelImage, String, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor used to record the ChangeName script action line.
ActionChangeOrientations - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's orientations
ActionChangeOrientations() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrientations(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Main constructor with parameters for changing the orientations
ActionChangeOrigin - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's origin
ActionChangeOrigin() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrigin(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Main constructor with parameters for changing the origin
ActionChangeResolutions - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions.
ActionChangeResolutions() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeResolutions(ModelImage, boolean, int, float) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Main constructor with parameters for changing the resolution/slice thickness.
ActionChangeTalairachInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's talairach information
ActionChangeTalairachInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTalairachInfo(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Main constructor with parameters for changing the talairach information
ActionChangeTransformInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeTransformInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTransformInfo(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Main constructor with parameters for changing the transform information
ActionChangeUnits - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeUnits() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeUnits(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Main constructor with parameters for changing the units of measure
ActionClone - Class in gov.nih.mipav.model.scripting.actions: A script action which clones an input image and puts it into a new image frame.
ActionClone() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor for the dynamic instantiation and execution of the script action.
ActionClone(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor used to record the script action line.
ActionCloseFrame - Class in gov.nih.mipav.model.scripting.actions: An action which closes the frame containing an image.
ActionCloseFrame() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor for the dynamic instantiation and execution of the script action.
ActionCloseFrame(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor used to record the script action line.
ActionCollectGarbage - Class in gov.nih.mipav.model.scripting.actions: Forces the JVM to perform a garbage collection of un-referenced memory.
ActionCollectGarbage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage
ActionCreateBlankImage - Class in gov.nih.mipav.model.scripting.actions: A script action which creates a new blank image with a set of characteristics.
ActionCreateBlankImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor for the dynamic instantiation and execution of the CreateBlankImage script action.
ActionCreateBlankImage(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor used to record the CreateBlankImage script action line.
actionDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
ActionDiscovery - Interface in gov.nih.mipav.view.dialogs: Classes which implement this interface are able to report metainformation about themselves, return their input and output parameters, run their action using a set of input parameters, retrieve the real name of images they output, and return whether they have completed successfully.
ActionExit - Class in gov.nih.mipav.model.scripting.actions: A script action which causes MIPAV to exit completely.
ActionExit() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExit
ActionExtractImageB - Class in gov.nih.mipav.model.scripting.actions: An action which extracts the imageB from a frame and puts it into a new image frame.
ActionExtractImageB() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor for the dynamic instantiation and execution of the script action.
ActionExtractImageB(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor used to record the script action line.
actionField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: NoteField for providing a note about this marker.
ActionImageProcessorBase - Class in gov.nih.mipav.model.scripting.actions: A base class for script actions which perform their action using an input image.
ActionImageProcessorBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor for the dynamic instantiation and execution of the script action.
ActionImageProcessorBase(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionImageProcessorBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionKeyListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
actionListener - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
ActionMaskToPaint - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a paint mask based on a mask image.
ActionMaskToPaint() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor for the dynamic instantiation and execution of the MaskToPaint script action.
ActionMaskToPaint(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor used to record the MaskToPaint script action line.
ActionMaskToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI from a mask image.
ActionMaskToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor for the dynamic instantiation and execution of the MaskToVOI script action.
ActionMaskToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor used to record the MaskToVOI script action line.
ActionMetadata - Interface in gov.nih.mipav.view.dialogs
ActionMetadata.ImageRequirements - Enum in gov.nih.mipav.view.dialogs
ActionOpenAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which opens all VOIs from the directory where VOIs are saved by default when a SaveAllVOIs action is executed.
ActionOpenAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor for the dynamic instantiation and execution of the OpenAllVOIs script action.
ActionOpenAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor used to record the OpenAllVOIs script action line.
ActionOpenImage - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the opening of an image
ActionOpenImage(ModelImage) - Constructor for class gov.nih.mipav.model.provenance.actions.ActionOpenImage: Constructor used to record the provenance action line
ActionOpenVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which opens a VOI from disk and adds it to an image.
ActionOpenVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor for the dynamic instantiation and execution of the OpenVOI script action.
ActionOpenVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor used to record the OpenVOI script action line.
ActionPaintToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all paint within an image to some type of mask image (short, binary, ubyte).
ActionPaintToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor for the dynamic instantiation and execution of the PaintToMask script action.
ActionPaintToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor used to record the PaintToMask script action line.
ActionPaintToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI based on the paint mask of an image.
ActionPaintToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor for the dynamic instantiation and execution of the PaintToVOI script action.
ActionPaintToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor used to record the PaintToVOI script action line.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Routine to catch action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.CoordinateViewListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Calls various methods depending on the action used by the advanced calculator.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.file.FileJP2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin: Do super.actionPerformed().
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: When the OK button is pressed, sets variables and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Responds to row button, column button, OK button, cancel button, and borderB button for color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Performs some error checking, then closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Catches action events: Okay, Cancel, Help and ChooseColor.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.OKAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Handle action events from the GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Handles events generated by the user interface, and takes appropriate action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Performs the following actions based on the command:
OK - uses the "current rectangle" set either by a listener of a glass pane (region mode) or by the window listener (window mode) Cancel - cleans up and disposes the dialog Region - sets all the glass panes visible to enable drawing on top of objects without selecting them Window - sets the glass panes invisible; then when a window is selected, the listener will save that rectangle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: Handles the action events (called from script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: Sets parameters in ViewJComponentEditImage when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Calls run on the algorithm from the script parser.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Handles the IGNORE button possibility of the ActionEvent, otherwise passes control to the super event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The actionPerformed method
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Sets the appropriate file filter when the "OK" button is pressed; otherwise disposes of the dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Processes button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Tests if entered intensity is within bounds and saves it.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBgListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Performs a directed action of the delete button or listB buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire: Sets the selection based on which radio button is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Closes Dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Reads event from one of the buttons to perform that buttons action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Processes the events from this dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNColors: Tests then sets the number of colors when the "OK" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: actionPerformed - closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrder: Disposes of dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: performed an action!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: the usual stuff.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Sets parameters in PaintGrowListener when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Handle events from the dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Only perform the save LUT action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Main event handler for MIPAV scripting tool.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Closes dialog box when the OK button is pressed and sets the information, doing error checking for every tag.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Closes dialog box when the OK button is pressed and sets the information.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Closes dialog box when the OK button is pressed and sets the information; when multi checkbox is selected or deselected, enables or disables appropriate labels and text fields; and disposes on cancel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Reacts to the following actions:
Open - asks the user to choose a script file and dumps the contents to the text area
Save - saves the script to a file
Exit - calls windowClosing
Pause - pauses or resumes the script recording by setting isRecording appropriately
Edit - makes the text area editable or uneditable.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: If the user hits the "OK" button, checks to make sure he or she entered valid data.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Sets smoothing varaibles when "OK" is pressed; enables the volumeText box when the limitCheckBox is pressed, disposes dialog when "Cancel" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Calls transform methods to transform image if "Apply" is pressed; if "Cancel" is pressed, disposes.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrim: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Closes dialog box when the OK button is pressed and sets the image type and suffix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies changes to VOI when "Apply" is pressed; closes when "Cancel" is pressed; and calculates statistics and outputs them to the message frame when "Calculate" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom: Closes dialog box when the OK button is pressed and sets zoom.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: actionPerformed - JButton events:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: When state changes in some elements of the panel, the panel must make display changes; these changes are registered here.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.ExcluderOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Performs the following actions based on the command:
OK - Initializes pertinent fields, checking that all fields are filled out correctly, before sending the information to be processed for an email Cancel - cleans up and disposes the dialog Other - sends event to secondary method that looks for combobox events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Catches action events: Okay, Cancel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JFrameHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelChecklist: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelFileSelection: Responds to ActionEvents, such as the "Browse" button being clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelListController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelTreeController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.MipavUtil.ActionAdapter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Invoke the action event accroding to the comamnd passed in.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Action performed method required when extending JPanelRendererBase.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: actionPerformed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Executes the following actions depending on what called this method:
Fly - changes the view platform to fly mode, so that the left mouse button is zoom, the right mouse button is translate, and the middle mouse button is pitch and roll. Standard - changes the view platform back to the standard, with the left mouse button grabbing the object and rotating it and the left mouse button with the alt mask doing a zoom. Reset - resets the view to what it was when the user called up this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Calls various methods depending on the action: Load in menu - calls a file chooser and loads the quad surface Save in menu - calls a file chooser and saves the quad surface Exit in menu - exits this frame View in menu - opens view dialog Mouse in menu - opens mouse recorder dialog Line checkbox in menu - toggles polygon mode between fill and line Visible checkbox on panel - toggles image on and off
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Action perform event function that handle all the commands in the probe panel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Action performed method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.SceneState: Stub method for classes that extend this Object.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.OkColorListener: Sets the button color to the chosen color and changes the color of the fiber bundle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: ActionListener event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Action performed handler for this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: ActionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Stops the thread, and disposes the progress bar.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewControlsImage: Action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Method to handle action events generated by the main UI when the current frame is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Handles action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.bColorListener: Resets the background color based on the user's choice.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.ColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessage: If "Save", saves text to file; if "Clear", clears appropriate text area; if "Copy", copies text to clipboard; if "Cut", removes the text and copies it to the clipboard; and if "Select", selects all text in text area.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Listen for events from the MIP frame GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage.OkColorListener: Pick up the selected color and call method to change the color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Will execute the uninstall action
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar: Closes this progress bar when the cancel button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
ActionSaveAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOIs in an image to disk.
ActionSaveAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor for the dynamic instantiation and execution of the SaveAllVOIs script action.
ActionSaveAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveAllVOIs(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveBase - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor for the dynamic instantiation and execution of the script action.
ActionSaveBase(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor used to record the script action line.
ActionSaveImage - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImage(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor used to record the script action line.
ActionSaveImageAs - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImageAs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImageAs(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor used to record the script action line.
ActionSaveTab - Class in gov.nih.mipav.model.scripting.actions: A script action which records saves the text contained in one of the output frame's tabs.
ActionSaveTab() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor for the dynamic instantiation and execution of the SaveTab script action.
ActionSaveTab(String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor used to record the SaveTab script action line.
ActionSaveVOIIntensities - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOI intensities in an image to disk.
ActionSaveVOIIntensities() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor for the dynamic instantiation and execution of the SaveVOIIntensities script action.
ActionSaveVOIIntensities(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSaveVOIIntensities(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSelectAllVOIs - Class in gov.nih.mipav.model.scripting.actions
ActionSelectAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor for the dynamic instantiation and execution of the SelectAllVOIs script action.
ActionSelectAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor used to record the SelectAllVOIs script action line.
ActionStartMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the starting of MIPAV
ActionStartMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStartMipav
ActionStopMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the closing of MIPAV
ActionStopMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStopMipav
ActionVOIToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all VOIs within an image to some type of mask image (short, binary, ubyte).
ActionVOIToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor for the dynamic instantiation and execution of the VOIToMask script action.
ActionVOIToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor used to record the VOIToMask script action line.
activate() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
activateStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
active - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta
active - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
active - Variable in class gov.nih.mipav.model.structures.VOI
active - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag indicating whether or not a VOI is active (selected).
active - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
active - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
active(int, double[], double[], int[], double[], int[], int, boolean[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
ACTIVE_IMAGE_COLOR - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage: Color used in the rectangle indicating the image is active.
active_set - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_set - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
active_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
activeBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Active the current burning point type.
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
activeContoursAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
activeDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
activeFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Active frame
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: The image that contains the VOI text.
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: The currently selected image
activeImageColorBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: border size for active image color
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeLightBulbIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Record the current active index of light bulb, which is being picked.
activeProbe(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Active the corresponding probe with the given probe type.
activeReceivers - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
activeSliceButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
activeTree - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Livewire calculations:
activeTree - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
ActiveTree() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Sets root node to null.
ActiveTree() - Constructor for class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Sets root node to null.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: The VOI on which to perform the calculations.
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation only for the active volume
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
actOnPath - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: for the files selected ...
actual_number_of_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
actualDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 18.
actualHistory - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
actualThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
actualThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aCutoff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
AD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ad1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ADAMS_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adaptiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
adaptiveTruncatedVectorMedian(float, float, float, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Only used with color images in vector filtering.
adaptiveVectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
adcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
ADCImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: New edges that occur because of modified triangles being added to the mesh must be added to the heap and the heap must be updated.
add(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit: Adds the parameter i to the stored value.
add(int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Add the following information for a "branch" path of the graph: an array of key values for each point along the path, an array of 3D coordinates assoicated with each point, and an array of distances each point is from its nearest boundary.
add(int, float) - Method in class gov.nih.mipav.model.structures.HQueue: add - adds a value to the queue.
add(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Add a branch to the already existing branch at the specified distance along the branch.
add(int, VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(MetadataExtractor.Knot) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath: Appends a knot (set of 3 points) into the list
add(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial
add(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
add(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from ViewJComponentTriImage to add the image-align protractor.
add(VOIBase, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a point to the voi contour
add(VOIBase, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a new point to the end of the current contour.
add(VOIPoint) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice: Add a new VOIPoint to this polyline.
add(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is (this + y).
add(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Plus operator.
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add(CVisRGBA, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add(Component) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, int) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewControlsImage: Adds a component to the toolbar panel using the given gridbag constraints.
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(HashMap<String, String>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
add(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JMenuItem) - Method in class gov.nih.mipav.view.JScrollMenu
add(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
add(Polyline, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
Add(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Add(NVectorF, float, NVectorF, float, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(NVectorF, float, NVectorF, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(VectorD, double, VectorD, double, VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorD, double, VectorD, VectorD) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorF, float, VectorF, float, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
Add(VectorF, float, VectorF, VectorF) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
ADD - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ADD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: operation constants
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: add
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
add_dictionary(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
add_edge_to_aet(GenericPolygonClipper.edge_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_event(TURN_REP, TURN_REP, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
add_gaussian_noise(double[], double[], double[], double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
add_intersection(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_into(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add_into(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add_into(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add_into(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add_into(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add_into(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add_left(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_local_min(GenericPolygonClipper.polygon_node[], GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_right(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_st_edge(GenericPolygonClipper.st_node[], GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_SubSigs(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ADD_TAG - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a top level dicom tag
ADD_TAG_SEQ - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a dicom tag contained within a sequence
add_to_sbtree(int[], GenericPolygonClipper.sb_tree[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add128 - Variable in class gov.nih.mipav.model.file.FileZVI
add3DMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DVOI(String, SurfaceState, VolumeSurface) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
addABCD(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
addAbstractSyntax(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds proposed abstract syntax to hash table.
addActionListener(ActionListener) - Method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
addActiveImageControl() - Method in class gov.nih.mipav.view.ViewControlsImage: Displays the panel which controls which image is the "active image" displayed when imageB is available.
addAllSupportedAbstractSyntaxes() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds all proposed abstract syntaxes to hash table.
addAloneMenu(JMenuBar) - Method in class gov.nih.mipav.view.ViewUserInterface: Adds a standalone menu to the user interface.
addAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to ambient lighting.
addAnimationLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector, JPanelAnnotationAnimation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addAnnotateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: button for adding annotation points for the path planning
addAnnotation(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add an annotation to the annotation list.
addAnnotation(VOIWormAnnotation, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Adds an annotation listener to the latticeModel.
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds an annotation listener.
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: When left mouse press with the control key down on the bottom three planar view, add the annotation point
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Add the annotation point
addAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Called when new annotations are loaded from file, replaces current annotations.
addAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the anonymization button and adds it to the button panel.
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Sets the value of the attribute element; used for setting attribute of variables.
AddBackSlash(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Ensures that a string is terminated with a backslash.
addBlur(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Combines the randomized-voxel blurred image with the output image.
addBorder(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
addBorder3D(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: This method adds a border to the input data so that borders can be dealt with easily.
addBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Adds the slice frame for slice of the given orientation to the scene graph.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds a BranchGroup to the display.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender -- adds a BranchGroup to the main Display.
addBranchGroup(Node, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Creates a BranchGroup containing the input Node and Transform3D, and returns the BranchGroup.
addBrowseFilesButton() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: adds the "Browse Files ...." button to the right of the panel.
addBurn(BurnAttributes) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Add a burn to the treatment list.
addButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
addButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
addButton(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating buttons
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addCellEditorListener(CellEditorListener) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
addChannelCheckboxListener(ItemListener) - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Add an ItemListener to all of the color channel checkboxes.
addChannelComponent(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addCleanupOnWindowClosingListener(Window) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Adds a WindowListener to the specified window that takes care of cleanup (GL resources) when the window is about to close.
addClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach clipping plane branch group.
addClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach arbitrary clip slice bounding frame.
addClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static clip slice bounding frame.
addClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static inverse clip slice bounding frame.
addClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X clip slice bounding frame.
addClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X Invative clip slice bounding frame.
addClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y clip slice bounding frame.
addClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y Invative clip slice bounding frame.
addClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z clip slice bounding frame.
addClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z Invative clip slice bounding frame.
addCollectionOfRunnable(Collection<Runnable>, Collection<String>) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Secondary method for registering algorithms to the multi-bar.
addCommentLine(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a comment line to the current script (if one is being recorded).
AddComplexRootPair(Vector<Double>, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addConnections(Backpropagation.Neuron[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addConnections(ArrayList<Backpropagation.Neuron>) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the control panel.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the control panel.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Helper method that adds components to the control panel for the grid bag layout.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the convert button and adds it to the button panel.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the convert button and adds it to the button panel.
addCoordinateChangeListener(CoordinateChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Add someone who wants to be notified about crosshair coordinate changes.
addCoordinateViewListener(ContourPlot.CoordinateViewListener) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Adds a ContourPlot.CoordinateViewListener to this renderer which will be notified whenever the coordinate view changes (i.e. when ContourPlot.CoordSysRenderer.setCoordinateView(double, double, double, double) is called)
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Attach cubic control branch group.
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Attach cubic control branch group.
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewControlsImage
addDataset(String, Integer, Boolean) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addDatasetRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addDataToHash(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.famsPoint, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDataToRes(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_res_cont, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDDTypeHash(int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
addDetector(String, String, String, Float, Float, Float, Integer, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
AddDiagonalAndInvert(double[], int, CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
addDiffuse(SoftwareMaterial, SoftwareVertexProperty, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to diffuse lighting.
addDimElem(String, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new dimension element with the specified parameters into the dimension array at the gievn index.
addDirectory(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Adds a directory to this metadata collection.
addDirToLibPath(String) - Static method in class gov.nih.mipav.util.NativeLibraryLoader
addedCurve(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener: handles an VOIEvent as a selection change.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addEdge(float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Add the edge to the EdgeList, check to make sure that edge has not already been added.
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Add the edge to the EdgeList, check to make sure that edge has not already been added.
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdge(Vertex, Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdgeIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
AddEdges(double[], double, Edge[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
addedVOI(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener: handles an VOIEvent as a selection change.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addElement(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(int) - Method in class gov.nih.mipav.model.structures.IntVector: Pushes a new value onto the array.
addElement(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(ProvenanceEntry) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Catches the Vector's addElement for listener notifaction
addElement(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOI) - Method in class gov.nih.mipav.view.ViewVOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
addElement(VOIBase, boolean) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
AddElementToGroup(T, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
addEntry(Class, Class...) - Method in class gov.nih.mipav.plugins.ManifestFile: Adds an entry to the manifest file, does in fact write to the file.
addError(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Registers an error message with this directory.
addError(String, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
AddEvent(String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
addExifTagNames(HashMap<Integer, String>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase
addExperiment(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExperimenter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExtension(String) - Method in class gov.nih.mipav.model.file.FileTypeInfo: Add an extension to the file type's list of supported suffixes.
addExtension(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Add an extension to the list of possible extensions valid for this filter.
addExtensionAssociation(String, int) - Static method in class gov.nih.mipav.model.file.FileTypeTable
AddExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the amount shape extents added (warning: shape extents will be remove in later versions).
addFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFace(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFiles(File, Vector<String>) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
addFilesToVector(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Recursively adds DICOM filenames and directory paths to a Vector.
addFilter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addFindResultToList(DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Utility function to collect the results of a DICOM query.
addFlightPath() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender to display the flythru flight path from the flythruRender.
addFlightPath(Shape3D, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds the flythru path shape and current view position to the display.
addFrames(libdt.PatchExtractor, libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Add a new function point to the current LUT transfer function.
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: /
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Add a new function point to the current LUT transfer function.
addFunctionToLUT() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the LUT functions collected within the functionVector.
addFunctionToRGB() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the ModelRGB functions contained within the functionVector.
addGattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new global attribute array element with the specified parameters into the global attribute array at the given index.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add a new geodesic component to the TriMesh surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a geodesic element to the surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add a new geodesic component to the surface.
AddGeodesic(Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Add a new geodesic component to the surface.
addGiniImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
addGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
addGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Add the gradient magnitude hitogram to the opacity control panel.
AddGroundtruth(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth from give image and voi
AddGroundtruths(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth
addGroup(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: DOCUMENT ME!
addGuideLine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Draw the red guiding line along the start and end point.
addImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Add model image into the capture frame.
addImage(String, String, String, Integer, Integer, Integer, Integer, Integer, Float, Float, Float, Float, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: browse button
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: browse button
addImageDisplayListener(ViewImageUpdateInterface) - Method in class gov.nih.mipav.model.structures.ModelImage: Add a listener to this class so that notifyListener can be used to notify all listeners to update the display of the image.
addImageRegistryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: add a memory change listener.
addImpl(Component, Object, int) - Method in class gov.nih.mipav.view.JScrollPopupMenu
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
addInclude(Integer, URI, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: need these functions to create the classes within..
addInputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds an image register as an input-image
addInsertionPoint(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a point to the lattice.
addInstrument(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addIntensityLock(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Adds an Integer object to the intensityLockVector.
AddInterior(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Add articifial interior points to the shape by making a Delaunay triangulation and adding the centroid of each triangle.
addItem(int, float, boolean, Point3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(int, float, boolean, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(FileDicomSQItem) - Method in class gov.nih.mipav.model.file.FileDicomSQ: Add an item to the sequence vector.
addItem(FlyPathAnnotateList.Item) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Add the specified annotation item to the end of the list.
addItem(FlyPathAnnotateList_WM.Item) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Add the specified annotation item to the end of the list.
addItemToRender(ContourPlot.Renderable) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer: Adds the specified item to the corresponding renderer.
addItemToRender(T) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer: Adds an item to this renderer's ContourPlot.GenericRenderer.itemsToRender list.
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: label for browsing for additional images
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: label for browsing for additional images
additionalImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: list of any additional images browsed to
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: additional images to concat...the ones you add later on
additionalPluginDirList - Static variable in class gov.nih.mipav.plugins.PluginUtil
additionalSets - Variable in class gov.nih.mipav.model.file.FileImageXML: A listing of all the additional PSets to be written into the saved file.
additionalTagsList - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
ADDITIVE - Static variable in class gov.nih.mipav.model.structures.VOI: Mask as ones - i.e. put ones to indicate VOI location
addJarContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
addJustVerificationAbstractSyntax() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds just the verification syntax for DICOM verification process.
addkernel - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
addKey(String, String, String) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addKeysToAllowList(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating labels
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addLayoutComponent(String, Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
addLeadingZeros(int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a number.
addLeadingZeros(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a string representation of a number.
addLeftRightMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLeftRightMarker(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a new left/right marker to the worm image.
addLightSource(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addLightSourceRef(Integer, Integer, String, Float, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds a scriptable action to an image's data provenance
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Add a line to the current script by requesting a script action to generate its script line.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLineArray(LineArray, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called from the JDialogDTIInput.
addLineLabel(double, int, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineSegment(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addList() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
addListener - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
addListener(AlgorithmInterface) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Add a listener to this class so that when when the algorithm has completed processing it can use notifyListener to notify all listeners that the algorithm has completed.
addListeners() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Adds all listeners required by this accessory.
addLUValue(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds LUValue for either LUT or modelRGB.
addMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Adds a matrix to the map. matrices will be keyed by their type and sequential numbering
addMemoryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: add a memory change listener.
addMenuDragListener(Component, MenuDragMouseListener) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Attaches a MenuDragMouseListener to comp and all of its sub-components (if comp is a JMenu/JMenuItem.
addMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: ReplaceMesh is used by the Geodesic when a mesh is cut.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Add new mesh to the volume rendering.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called when a mesh is changed by the Geodesic class, when a mesh is cut along the geodesic curve it may be divided into two or more meshes.
addNeurite(VOI, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates a natural spline curve to fit the input set of annotation points to model a neurite.
addNeurite(String, String[], ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: When true the dialog creates a new node, otherwise it is used to edit the Notes.
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
addNode(int, int, AlgorithmNetworkSnake.AnchorPosition) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addNode(String, String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Add a new node under the picked node.
addNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a new display node to the volume/surface display list.
AddNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Add a new scene-graph node to the display list.
addNodeDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNormals(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
addNoSplitVariable(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addObjective(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addObserver(Observer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
addObserver(Observer) - Method in interface gov.nih.mipav.model.util.Observable: Adds an observer to the set of observers for this object, provided that it is not the same as some observer already in the set.
ADDON - Variable in class gov.nih.mipav.model.algorithms.CVODES
addon_message_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
addOnNextLine(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOnNextLine(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addOTF(Integer, Integer, Integer, String, Boolean, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
addOutputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
addPadding(ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Pad an image by copying the first and last slices 2 more times so that the laplacian algorithm behaves well in edge conditions.
addParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: menu item for adding parameter.
addParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Adds a new parameter to the set.
AddParameter(Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
AddParameterBlock(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(double[], int, CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
addParameterData(String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Adds a new row of parameter data to the display's table.
addParentTag(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
addPath(T, byte[]...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Store the given value at the specified path.
AddPath(CAAMShape, CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds a path to the shape.
addPixelLine(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
addPlate(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addPluginDirectory(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
addPluginToMenu(Class<?>, String, String, JMenu, ActionListener, String) - Method in class gov.nih.mipav.view.ViewUserInterface
addPoint(float, float) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPoint(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
addPoint(int, int) - Method in class gov.nih.mipav.model.structures.PointStack: Adds a point to the arrays.
addPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
addPoint(Vector2f) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPointCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Standard cursor: add a point (hand).
addPointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
addPointToFunction(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds a point to the function associated with the LUT or modelRGB.
addPointToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Toggle buttons for voi/points
addPolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add polyline to the render.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Add a polyline to the display.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a polyline to the VolumeDTI display.
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
addPopup(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Link the popup menu to the input voi so the popup menu will operate on the input voi.
addPreambleAndGroupTwoTags(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Builds buffer of DICOM part 10 preamble and require Part 10 group 2 tags.
addPresentationContext(DICOM_PresentationContext) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Adds a presentation object to a vector list of presentation contexts.
addPresentationContextAccept(DICOM_PresentationContextAccept) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Adds the presentation context to the accepted context list.
addProcessLoggingNotifier(JTextArea) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: a list of JTextAreas to be notified when a change in the process/output log is made. this permits almost-real-time updates to output devices this method adds the selected list of JTextAreas to receieve the output logs.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Adds the ProgressChangeListener to this FileBase object.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.file.FileBase: Adds the ProgressChangeListener to this FileBase object.
addProject(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addProjectRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset: DOCUMENT ME!
addProvenanceChangeListener(ProvenanceChangeListener) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Adds a listener (JDialogDataProvenance) to receive notifications
addProvenanceData(ProvenanceEntry) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Adds an entry to the Model (shows on table)
addPset(String, XMLPSet) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
addQE(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
AddRandomBlock(int, int, int, int, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
addRawOptionsToParameters(ParameterTable, FileInfoBase) - Static method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Adds parameters to a table, describing a raw image.
AddRealRoot(Vector<Double>, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addRegion(int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel to push/pull VOIs from full list to selectable list.
addReplaceMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Add as New/Replace button (depending on selected matrix type).
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
address - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AddResult(CAAMShape, CAAMShape, double, CAAMOptRes) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new result to the back.
AddResults(CAAMEvaluationResults) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new set of results to the back.
addROI(Integer, Integer, Integer, Integer, Integer, Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: DOCUMENT ME!
addRow(ViewTableModel, Object[], boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Determines whether the given row should be shown.
addRunnable(Runnable, String, int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Basic method for registering an algorithm to the multi-bar.
addSaveOptionsToParameters(ParameterTable, FileWriteOptions, int[]) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Add the save options needed to record the saving of an image to a parameter table.
addScaled(Polynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
addScaled(PPolynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
AddScaled(NVectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
AddScaled(Polynomial, double, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, double, Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(VectorD, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
AddScaled(VectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
addScannerLabels(String, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: DOCUMENT ME!
addSchwarzChristoffelLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph
addScreen(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addScreenRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate: DOCUMENT ME!
addScriptActionLocation(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Adds a new package where we should look for scriptable actions.
addScriptRecordingListener(ScriptRecordingListener) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Adds a class to the recorder's list of listeners.
addScriptVOI(ScriptVOI) - Method in class gov.nih.mipav.view.dialogs.ScriptImage
addScrollList(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
addSegment(byte, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Adds segment bytes to the collection.
addSegment(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSegment(Point2D, Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
addSeparator() - Method in class gov.nih.mipav.view.JScrollMenu
addSeriesData(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: AddSeriesData This method populates the series table based upon the studyID.
addSet - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding sets.
addShape(Object, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
AddShapeExtends(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds an extra outer path on each outer path in the distance of 'nPixels' along the point normal.
addShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: add shortcut button.
addShortcut(String) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addShortcut(String, KeyStroke) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable with a given keystroke. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Pass the VolumeSlices from the Volume Renderer to the PlaneRender objects.
addSnpData(char[], int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addSortButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: DOCUMENT ME!
addSpecular(SoftwareMaterial, SoftwareVertexProperty, Vector3f, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to specular lighting.
addSphere(Vector3f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameImage
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add a curve to the list.
addStatusPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Method that adds components to the control paenl.
addStringToTable(byte[]) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStringToTable(byte[], byte) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStudyData(FileInfoDicom) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Adds the study data to the table.
addsub(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addsub(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
addSubTree(Graph, Node, Node, Component[], int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Function recursively creates a tree structure based on an array of menu components.
addSurface - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding surfaces.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add surface to the volume image.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Sets up the surface by setting the color of the material to black, setting the polygon to no cull-face and a fill mode, and allowing intersections in case we want picking ability.
addSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surface to the volume image.
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add TriMesh surfaces to the Volume Renderer.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a surface path to the image's surface list.
addSurface(String, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Add a surface to the table.
addSurface(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Adding surface to the 3D texuture volume.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Add a surface to the display list.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add new mesh to the volume rendering.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Add the fly-through surface.
addSurfaceMask(int, BitSet, ColorRGBA[], ColorRGBA) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Adds a surface mask to this image.
addSurfaces(SurfaceAttributes[], boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds an array of surfaces described by their SurfaceAttributes to the scene graph.
addSurfaces(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adding the surface with specific directory and file name.
addSurfaces(TriMesh[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surfaces to the Volume Tri-Planar renderer.
addTab(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Adds a tab to the MessageFrame tabbed pane with the given Title.
addTabbedPane() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.
addToAvailableImageList(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToAvailableImageList(String, String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToEnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
addToFile(Class, ArrayList<Class>) - Method in class gov.nih.mipav.plugins.ManifestFile
addToList(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Add a parameter to the end of the list.
addToModelClip(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Add a new branch group to model clip for clipping.
addToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add surface volume renderer control buttons.
addToPane() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Adds what the container just built (based on the given inputs) to the component barPanel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the top panel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the top panel.
addToTempDirList(String) - Static method in class gov.nih.mipav.view.ViewUserInterface
addToTerminalNodes(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addTract() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Updates the tract list user-interface.
addTract(VOIContour, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
addTract(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add tract into the DTI display
addTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Adds a new transfer syntax to the list (ie. vector)
addTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
addTriangle(delaunay.Site, delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
AddTriangleIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(float[], float, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(double[], double, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(float[], float, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(CoredMeshData, Vector<CoredPointIndex>[], Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
AddTriangles(CoredMeshData, Vector<CoredPointIndex>, Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
addValue - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 112 - value to add to pixels.
addVarElem(String, int, int[], int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new variable element with the specified paramenters into the array at the given index.
addVattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Adds an attribute element to the variable attribute array.
addVattValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Sets the value of a variable attribute element.
addVectorListener(VOIVectorListener) - Method in class gov.nih.mipav.model.structures.VOIVector: adds the update listener.
addVertex(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddVertex(Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
addVOI(ModelImage, VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOI(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Adds voi to the voi vector
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Add a new VOIBase.
addVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a voi path to the image's VOI list.
addVOI(String, String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addVOIListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI: adds the update listener.
addVOIManager(ModelImage, ModelImage, Component, ScreenCoordinateListener, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Adds a point to the current voi.
addVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage: adds VOI vector for with new VOIs.
addVOIS(VOIVector, Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addVOIsToCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
addVOIUpdateListener(UpdateVOISelectionListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Adds a UpdateVOISelectionListener.
addVOIUpdateListener(UpdateVOISelectionListener) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Add a UpdateVOISelectionListener so it will receive VOI selection updates.
addVolumeVOI(VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addWhiteListedKeys(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Deprecated.
JPanelAnonymizePanelTags#addKeysToAllowList(ArrayList,ArrayList)
adids - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
ADJ_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Use adjacency model to perform triangle consistency.
adj_ranks - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
adjacencies - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
AdjacencyCountFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencyCountFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
AdjacencySetFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencySetFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacent - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
ADJACENT_BACK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_DOWN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_DOWN_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
ADJACENT_NEXT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_UP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_UP_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentDown - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
adjacentUp - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjCfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjE(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjGKN(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: adjusted image.
adjInvF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: number of VOIs for adjustable slice
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: adjusted marker type.
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjncy - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
adjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjRadon(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjU(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjust_amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
adjustBins(int[], int[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust exp *
adjustExpPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
adjustExpPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
adjustExpSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
adjustExpSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
adjustExpTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
adjustExpTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
adjustGradientBins(VabraVolumeCollection, double, double, double, int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel: adjust green intensity
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust green intensity
adjustmentValueChanged(AdjustmentEvent) - Method in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
adjustOpacityFor000Color() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: >>>>>>> .r533 The purpose of this method is to examine both LUTs to determine if they are zero-based, that is, if they map values of zero to the color R=0, G=0, B=0.
adjustOrigBins(int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustPvalues(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
adjustScrollbars(int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
adjustScrollbars(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Adjust the translation of the transformation matrix by the sample pararmeter.
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
adjwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
admm_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ADMM_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
admm_seq_conv_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ADMM_SEQ_CONV_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Adobe_transform - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AdobeJpegDescriptor(MetadataExtractor.AdobeJpegDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
AdobeJpegDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
AdobeJpegReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
AdobeJpegReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest
adOpDialog - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Advanced function string.
adp_step_pgd_stop_func(int[], String[], NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
adub - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
adv(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER: Advance N-dimensional subscript
ADVANCED - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
advancedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Variables for Advanced Settings dialog.
advanceVOIUID() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
AdvancingFront - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingFront(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AdvancingFront.AdvancingTest - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingTest(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
advDecOptDialog - Variable in class gov.nih.mipav.model.file.FileJP2: The height of image
adwgts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
AE - gov.nih.mipav.model.file.FileDicomTagInfo.VR
aExp - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
afc(Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
afcmAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
affiliation - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Affiliation of investigator.
affine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
Affine() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Affine
AFFINE - gov.nih.mipav.model.algorithms.SIFT3D.tform_type
Affine_set_mat(SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
affineTransform(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: The input 4x4 homogeneous matrix H is assumed to multiply vectors V as H*V where V = (x,y,z,1).
affineTransform(float[][], float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Rotation R is 3x3, translation T is 3x1, and scale S is 3x1.
AFInfo() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo
AFNI - Static variable in class gov.nih.mipav.model.file.FileUtility: AFNI file type. extension: .head, .brik
AFNI_ACPC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type ACPC.
AFNI_ORIG - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Original.
AFNI_TLRC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Talairach.
afniEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
afniGroup - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
afniGroupArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
AFNIOrigExtents - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIOrigResolutions - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNITypeString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIViewType - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFTER - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Before/After index values for the two displayed spheres, canvases, and display panels:.
AFTER - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Before/After index values for the two displayed spheres, canvases, and display panels:.
afterExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
afterThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
afTimeC - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
agastDetector_5_8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
AgastDetector5_8 - Class in gov.nih.mipav.model.algorithms: agast5 - AGAST, an adaptive and generic corner detector based on the accelerated segment test for a 8 pixel mask Copyright (c) 2010, Elmar Mair All rights reserved.
AgastDetector5_8(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AgastDetector5_8
agcieAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE: DOCUMENT ME!
Age() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
Age(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
AgeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest
AgglomerativeInformationBottleneck - Class in gov.nih.mipav.model.algorithms: Copyright (C) 2007-11, Andrea Vedaldi and Brian Fulkerson Copyright (C) 2012-13, The VLFeat Team All rights reserved.
AgglomerativeInformationBottleneck() - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck(ModelImage, int, int, double[][], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck.VlAIB - Class in gov.nih.mipav.model.algorithms: ------------------------------------------------------------------
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
AGGREGATED_CIRCLES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
aggregatedCirclesDifferentSizesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationDifferentSizes - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
agvfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
Ah - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
aicAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
AICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AIF_conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_diffPeak - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_enable - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_cv_est_parGV - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_gv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_parameters - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_weights - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nVoxelMax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nVoxelMin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pArea - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pReg - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pTTP - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_recirculation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_x - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_y - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_voxels - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIFslice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
Ain - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
aindaneAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
airPressure - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Ai.
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Ai.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Bi.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Bi.
aki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akMVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of mesh points.
akNormal - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: normal vector arrayes.
akPVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of plane points.
akr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akSVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of sphere points.
Al - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Al - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
alertBackground(JTextField, boolean) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with ier[0] = 6.
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with errorStatus = 6.
ALFA02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ALFA12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: handle to BSE Algorithm *
alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alg - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: handle to alg
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: handle to the algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: algorithm
alg - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
alg_name - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alg2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
alg3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
ALGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
algCont - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List of containers that hold all the information to correctly draw each progress bar
algdiv(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
algList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List containing which runnables are registered to this listener
algo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
algo - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
algoAutoCorrelation - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
algoAutoCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
algoColorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
AlgoContainer(String, int, int) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Is either a AlgorithmCostFunction or a AlgorithmCostFunctions2D depending on images
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
algoLocal - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
algoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoQuantify - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
algoRegVOILankmark - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
algoReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
algorID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
algorithm - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
algorithm_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
Algorithm4DImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities
Algorithm4DImageCalculator() - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
Algorithm4DImageCalculator(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
AlgorithmActiveContoursWithoutEdges - Class in gov.nih.mipav.model.algorithms
AlgorithmActiveContoursWithoutEdges(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
AlgorithmAdaptiveKuwaharaFilter - Class in gov.nih.mipav.model.algorithms.filters: This algorithm is created from the description provided in the article: "Adaptive Kuwahara Filter" by Krzysztof Bartyzel, Published online July 6, 2015.
AlgorithmAdaptiveKuwaharaFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAdaptiveKuwaharaFilter(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAddMargins - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to add or remove margins around the image.
AlgorithmAddMargins(ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage.
AlgorithmAddMargins(ModelImage, ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage and store the results in the destImage.
AlgorithmAGCIE - Class in gov.nih.mipav.model.algorithms
AlgorithmAGCIE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE: Reference: An Adaptive Gamma Correction for Image Enhancement by Shanto Rahman, Md Mostafijur Rahman, M.
AlgorithmAGCIE(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
AlgorithmAGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Creates a new AlgorithmAGVF object.
AlgorithmAHE - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHE(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are returned to the source image.
AlgorithmAHE(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAHElocal - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHElocal(ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are returned to the source image.
AlgorithmAHElocal(ModelImage, ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAINDANE - Class in gov.nih.mipav.model.algorithms
AlgorithmAINDANE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAINDANE(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAnisotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: This algorithm anisotropically diffuses an image.
AlgorithmAnisotropicDiffusion(ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAnisotropicDiffusion(ModelImage, ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAntigradient2 - Class in gov.nih.mipav.model.algorithms: This is a port of the files anitgradient2.m and antigradient2.c created by Gunnar Farneback in the Spatial domain toolbox at http://www.imt.liu.se/mi/Tools.
AlgorithmAntigradient2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAnyTwoImagesSNR - Class in gov.nih.mipav.model.algorithms
AlgorithmAnyTwoImagesSNR(ModelImage, ModelImage, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: Creates a new AlgorithmAnyTwoImagesSNR object.
AlgorithmArcLength - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the arc-length of a Bspline fit to user defined control points.
AlgorithmArcLength(float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmArcLength(float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmASM - Class in gov.nih.mipav.model.algorithms
AlgorithmASM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM
AlgorithmASM.AppData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.ASMData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.FileMATLAB - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.LandData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.Options - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.P - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.PData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.SData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.TData - Class in gov.nih.mipav.model.algorithms
AlgorithmAutoCorrelation - Class in gov.nih.mipav.model.algorithms: Reference: Digital Image Processing, Second Edition by Rafael C.
AlgorithmAutoCorrelation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for black and white image in which correlation coefficients are placed in a predetermined destination image.
AlgorithmAutoCorrelation(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for color image in which correlation coefficients are placed in predetermined destination images.
AlgorithmAutoCorrelation.FitCorrelationModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoCovariance - Class in gov.nih.mipav.model.algorithms: let deli(x,y) = (i(x,y) - )/ where the angle brackets are used to denote a spatial average.
AlgorithmAutoCovariance(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for black and white image in which covariance coefficients are placed in a predetermined destination image.
AlgorithmAutoCovariance(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for color image in which covariance coefficients are placed in predetermined destination images.
AlgorithmAutoCovariance.FitCovarianceModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoSeedWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of the file AutoSeedWatershed.cpp which calls openCV written by Ravimal Bandara.
AlgorithmAutoSeedWatershed(ModelImage, ModelImage, float, float, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed: Constructs new watershed algorithm.
AlgorithmBarrelDistortion - Class in gov.nih.mipav.model.algorithms: Corrects barrel and/or pin cushion distortion for 2D images.
AlgorithmBarrelDistortion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion - default constructor.
AlgorithmBarrelDistortion(ModelImage, ModelImage, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion.
AlgorithmBase - Class in gov.nih.mipav.model.algorithms: Base abstract class for algorithms.
AlgorithmBase() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Default constructor which sets thread stopped to false, source and destination images to null, and destination flag to false.
AlgorithmBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Constructor which sets thread stopped to false and sets source and destination images.
AlgorithmBilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: Bilateral filtering smooths an image or VOI region of the image while preserving edges with 2 Gaussian functions.
AlgorithmBilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
AlgorithmBilateralFilter(ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Creates a new AlgorithmBilateralFilter object.
AlgorithmBilateralFilter(ModelImage, ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmBoundaryAttenuation - Class in gov.nih.mipav.model.algorithms.filters: Attenuate around the boundary of an object defined by a VOI in an image volume.
AlgorithmBoundaryAttenuation(ModelImage, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Set up the algorithm.
AlgorithmBoxCount - Class in gov.nih.mipav.model.algorithms
AlgorithmBoxCount(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
AlgorithmBrainExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting the brain from a 3D MRI.
AlgorithmBrainExtractor(ModelImage, int, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor(ModelImage, int, TriMesh, int, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmBrainExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmBrainSurfaceExtractor - Class in gov.nih.mipav.model.algorithms: This class provides an implementation of a second method for segmentation of the brain from a 3D MRI, as opposed to the BET algorithm implemented in AlgorithmBrainExtractor.
AlgorithmBrainSurfaceExtractor(ModelImage, int, float, float, boolean, int, float, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBRISK - Class in gov.nih.mipav.model.algorithms: BRISK - Binary Robust Invariant Scalable Keypoints Reference implementation of [1] Stefan Leutenegger,Margarita Chli and Roland Siegwart, BRISK: Binary Robust Invariant Scalable Keypoints, in Proceedings of the IEEE International Conference on Computer Vision (ICCV2011).
AlgorithmBRISK() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK: AlgorithmBRISK - default constructor.
AlgorithmBRISK(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK(ModelImage, ModelImage, boolean, int, int, int, boolean, boolean, double, Vector<Double>, Vector<Integer>, double, double, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK.BriskLayer - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskLongPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskPatternPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskShortPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.KeyPoint - Class in gov.nih.mipav.model.algorithms
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Compute the brute-force solution.
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Compute the brute-force solution.
AlgorithmBSmooth - Class in gov.nih.mipav.model.algorithms: Smoothing of VOI using 1 iteration of bSplines.
AlgorithmBSmooth() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
AlgorithmBSmooth(ModelImage, VOI, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Creates a new AlgorithmBSmooth object.
AlgorithmBSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmBSnake(ModelImage, float[], int, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Set up the snake algorithm so that it can be run.
AlgorithmBSpline - Class in gov.nih.mipav.model.algorithms: Modified code from Aaron Carass's Java implementation of Philippe Thevenaz's Cubic B-spline Interpolation.
AlgorithmBSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSpline: default constructor.
AlgorithmBSpline.ColorInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmBSplineControlPointImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineControlPointImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
AlgorithmBSplineScatteredDataPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineScatteredDataPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
AlgorithmCannyEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmCannyEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection - default constructor.
AlgorithmCannyEdgeDetection(ModelImage, ModelImage, double, double, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection.
AlgorithmCellTrackingAGVF - Class in gov.nih.mipav.model.algorithms: Active Contour class optimized for Cell Tacking, based on the following paper:
AlgorithmCellTrackingAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean, float, float, float, float, boolean, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Creates a new AlgorithmCellTrackingAGVF object.
AlgorithmCenterOfMass - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the center of mass for 2D and 3D black and white images.
AlgorithmCenterOfMass(ModelImage, float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Creates a new AlgorithmCenterOfMass object.
AlgorithmCenterOfMassRGB - Class in gov.nih.mipav.model.algorithms: * This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.
AlgorithmCenterOfMassRGB(ModelImage, float[], float[], float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Default constructor for running algorithm to calculate red, green, and blue centers of mass.
AlgorithmChangeType - Class in gov.nih.mipav.model.algorithms.utilities: This is a convenience function to convert from one image type to another and remap the data into a new range.
AlgorithmChangeType(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmChangeType(ModelImage, ModelImage, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmCircleGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned circles with a specified radius.
AlgorithmCircleGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmCircleGeneration - default constructor.
AlgorithmCircleGeneration(ModelImage, int, int, int, int, double, double, double, double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmRandomCircleGeneration.
AlgorithmCircleGeneration.erfcModel - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.erfcModel2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleToRectangle - Class in gov.nih.mipav.model.algorithms: References: 1.)
AlgorithmCircleToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle - default constructor.
AlgorithmCircleToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle.
AlgorithmCircularSectorToRectangle - Class in gov.nih.mipav.model.algorithms: This software uses 2D conformal mapping in converting a circular sector defined by 4 user points at the sector corners to a rectangle of user specified size.
AlgorithmCircularSectorToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle - default constructor.
AlgorithmCircularSectorToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle.
AlgorithmCoherenceEnhancingDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Coherence Enhancing Anisotropic Diffusion
AlgorithmCoherenceEnhancingDiffusion(ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmCoherenceEnhancingDiffusion(ModelImage, ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmColocalizationEM - Class in gov.nih.mipav.model.algorithms: An optional registration may be performed before colocalization.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression - Class in gov.nih.mipav.model.algorithms: This algorithm creates a 2D histogram from 2 colors of a single image or from 2 black and white images and uses an orthogonal line fit of the histogram data to generate a correlation line thru the histogram.
AlgorithmColocalizationRegression(ModelImage, ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression(ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColorEdge - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses a hypercomplex filter to find the edges between a region of two user specified colors.
AlgorithmColorEdge(ModelImage, ModelImage, long, long, long, long, long, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: This constructor initialises a Color Edge algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.UBYTE.
AlgorithmColorSaturation - Class in gov.nih.mipav.model.algorithms: This algorithm changes the saturation of a color image while keeping the hue and intensity constant.
AlgorithmColorSaturation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation - default constructor.
AlgorithmColorSaturation(ModelImage, ModelImage, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation.
AlgorithmComplexConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates a complex image from real data and imaginary data.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexToReal - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmComplexToReal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmConcat - Class in gov.nih.mipav.model.algorithms.utilities: Assumes the pixel resolutions are equal.
AlgorithmConcat(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Creates a new AlgorithmConcat object.
AlgorithmConcatMult - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult() - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult
AlgorithmConcatMult2Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult3Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConstELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC for a 3D image.
AlgorithmConstELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmConstPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmConstPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmConstPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmConstrainedELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmConstrainedOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmContrastEnhancementUsingExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmContrastEnhancementUsingExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion.kFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvergenceField
AlgorithmConvert3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities: Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
AlgorithmConvert3Dto4D(ModelImage, int, float, float, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D - Class in gov.nih.mipav.model.algorithms.utilities: The image is converted from a 4D to a 3D image.
AlgorithmConvert4Dto3D(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmCorrectSpacing - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to adjust image volume for cases when the slice spacing is not equal to the slice thickness.
AlgorithmCorrectSpacing(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Import source image into the class.
AlgorithmCostFunctions - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Creates a new AlgorithmCostFunctions object.
AlgorithmCostFunctions2D - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Creates a new AlgorithmCostFunctions2D object.
AlgorithmCrop - Class in gov.nih.mipav.model.algorithms.utilities: Crops 2D and 3D images using a supplied VOI.
AlgorithmCrop(ModelImage, ModelImage, int, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Creates new algorithms to crop image by specified bounds.
AlgorithmCropTilted - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to crop a tilted rectangle
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted cuboid to remove tilt and crop cuboid.
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted rectangle to remove tilt and crop rectangle.
AlgorithmCubicLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 3 which interpolates a given function f at the points x(-1), x(0), x(1), and x(2), and is given by p(x) = sum from i = -1 to i = 2 of li(x)*f(xi), where li, i = -1,0,1,2, which are called the fundamental polynomials, are given by li(x) = product from k = -1 to k = 2 for k !
AlgorithmCubicLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: AlgorithmCubicLagrangian - default constructor.
AlgorithmCumulativeHistogram - Class in gov.nih.mipav.model.algorithms
AlgorithmCumulativeHistogram(ModelHistogram, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for RGB image.
AlgorithmCumulativeHistogram(ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for grey scale image
AlgorithmCyclicPermutation - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmCyclicPermutation(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation
AlgorithmDConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDemonsLite - Class in gov.nih.mipav.model.algorithms.registration: Algorithm for non-linear registration with the DEMONS algorithm
AlgorithmDemonsLite(ModelImage, ModelImage, int, int, float, float, String, String) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmDEMRI3 - Class in gov.nih.mipav.model.algorithms: 3 model parameters are fit for each voxel in 3D: 1) K_trans in [0, 0.99] 2) User choice of k_ep in [0, 0.99] or ve 3) f_vp in [0, 0.99] K_trans and k_ep default to rates per second, but the user changed select rates per minute.
AlgorithmDEMRI3(ModelImage, ModelImage, double[], double[], double, boolean, double, int, double, ModelImage, double, double, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: Creates a new AlgorithmDEMRI3 object.
AlgorithmDEMRI3.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.Fit25HModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.FitDEMRI3ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmDicomOrder - Class in gov.nih.mipav.model.algorithms.utilities: Put 3D dataset into dicom order.
AlgorithmDicomOrder(ModelImage, int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: In place constructor.
AlgorithmDICOMtoAVI - Class in gov.nih.mipav.model.algorithms.utilities: Recursively traverses a directory and its subfolders, converting all 3D DICOM files to AVI with MP42 Compression.
AlgorithmDICOMtoAVI(String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Default Constructor.
AlgorithmDistanceFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmDistanceFilter(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
AlgorithmDTI2EGFA - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of a Diffusion Tensor Image to calculate an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image This algorithm works in conjunction with AlgorithmDTITract to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See: Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTI2EGFA(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Initialize the Algorithm with the input DTI Image:
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTICreateListFile - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTICreateListFile(String, String, String, String, String, JTextArea, boolean, boolean, int, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom if registration is to be done first
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec if registration is to be done first
AlgorithmDTICreateListFile.InstanceNumberComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number
AlgorithmDTICreateListFile.InstanceNumberVolComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number and vol. the vol is determined by the filename
AlgorithmDTITract - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of previous calculated FA, EigenVector and EigenValue images from AlgorithmDTI2EGFA to calculate fiber bundle tracts This algorithm works in conjunction with AlgorithmDTI2EGFA to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See:Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean, float, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDualContourSearch - Class in gov.nih.mipav.model.algorithms
AlgorithmDualContourSearch(ModelImage, int, int, int, int, double, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
AlgorithmDWI2DTI - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm calculates a Diffusion Tensor Image from a series of Diffusion Weighted Images.
AlgorithmDWI2DTI(ModelImage, boolean, int, int, int, int, int, float, String[][], int[], GMatrixd, String) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Create a new AlgorithmDWI2DTI
AlgorithmDWI2DTI(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
AlgorithmEdgeDetection3D - Class in gov.nih.mipav.model.algorithms
AlgorithmEdgeDetection3D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D - default constructor.
AlgorithmEdgeDetection3D(ModelImage, ModelImage, double, double, double, int, int, int, double, double, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D.
AlgorithmEdgeLaplacian - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacian(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Creates a new AlgorithmEdgeLaplacian object.
AlgorithmEdgeLaplacianSep - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacianSep(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Creates a new AlgorithmEdgeLaplacianSep object.
AlgorithmEdgeNMSuppression - Class in gov.nih.mipav.model.algorithms: Calculates the non-maximum suppression of an image at a scale defined by the user.
AlgorithmEdgeNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Creates a new AlgorithmEdgeNMSuppression object.
AlgorithmEdgePreservingSmoothing - Class in gov.nih.mipav.model.algorithms.filters: These are Maximum Homogeneity Neighbor Filters.
AlgorithmEdgePreservingSmoothing(ModelImage, ModelImage, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
AlgorithmEfficientWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
AlgorithmEfficientWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmEllipseGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned ellipses with a specified semi-major axis, semi-minor axis, and angle phi between the x-axis and the major axis of the ellipse.
AlgorithmEllipseGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration - default constructor.
AlgorithmEllipseGeneration(ModelImage, int, int, double, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration.
AlgorithmEllipseToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a circle.
AlgorithmEllipseToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle - default constructor.
AlgorithmEllipseToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle.
AlgorithmEllipseToRectangle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a rectangle.
AlgorithmEllipseToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle - default constructor.
AlgorithmEllipseToRectangle(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle.
AlgorithmEllipsoidFit - Class in gov.nih.mipav.model.algorithms: This code fits data points to a 3D ellipsoid.
AlgorithmEllipsoidFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: Creates a new AlgorithmEllipsoidFit object.
AlgorithmEllipticFilter - Class in gov.nih.mipav.model.algorithms.filters: This module contains a port from FORTRAN to Java of the FORTRAN program for designing elliptic-function filters and a port from MATLAB to Java of the MATLAB program ellipap1 for designing an elliptic analog lowpass filter prototype found in "Elliptic Functions for Filter Design" by H.
AlgorithmEllipticFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter: The FORTRAN example in the article of n = 7, apd = 0.1dB, k = 0.8 gives in Table VI: Make FORTRAN zeros poles and FORTRAN poles zeros Poles: -0.0455944342 + j1.026557002 -0.1713670100 + j0.918389608 -0.3689660125 + j0.603979789 -0.4980421689 + j0.0 Zeros: 1.268831784 1.467798747 2.384834232 For the MATLAB example rs = 55.43dB.
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFourierDescriptors - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with Elliptic Fourier Descriptors.
AlgorithmEllipticFourierDescriptors() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
AlgorithmEllipticFourierDescriptors(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Creates a new AlgorithmEllipticFourierDescriptors object.
AlgorithmELSUNCOpt2D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 2D image.
AlgorithmELSUNCOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 3D image.
AlgorithmELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmEmbeddedConfidenceEdgeDetection(ModelImage, ModelImage, int, double, double, double, double, double, double, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgImage - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection - default constructor.
AlgorithmEntropicEdgeDetection(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection.
AlgorithmEntropyMinimization - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmEntropyMinimization(ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEntropyMinimization(ModelImage, ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEvaluateMaskSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateMaskSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: Creates a new AlgorithmEvaluateMaskSegmentation object.
AlgorithmEvaluateSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: Creates a new AlgorithmEvaluateSegmentation object.
AlgorithmExtractSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that extracts the slices indicated in the list from the srcImage and puts them into the destImage.
AlgorithmExtractSlices(ModelImage, ModelImage, String[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Import source and destination images into the class.
AlgorithmExtractSlicesVolumes - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmExtractIndividualSlices
AlgorithmExtractSlicesVolumes(ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Import source and destination images into the class.
AlgorithmExtractSurface - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Tetrahedron Extraction.
AlgorithmExtractSurface(ModelImage, float, int, boolean, boolean, float, String, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Creates a new AlgorithmExtractSurface object.
AlgorithmExtractSurfaceCubes - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Marching Cube Extraction.
AlgorithmExtractSurfaceCubes(ModelImage, int, int, boolean, boolean, float, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Creates a new AlgorithmExtractSurfaceCubes object.
AlgorithmFaceAnonymizer - Class in gov.nih.mipav.model.algorithms: FaceAnonymizer algorithm computes the "face" from a ModelImage based on input parameters that specify the min/max voxel values for the face voxels, and the maximum skin thinkness.
AlgorithmFaceAnonymizer(ModelImage, int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Create a face Anonymizer.
AlgorithmFaceAnonymizerBET - Class in gov.nih.mipav.model.algorithms: Anonymize an image of a patient's head by removing the face.
AlgorithmFaceAnonymizerBET(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Construct the face anonymizer, but do not run it yet.
AlgorithmFaceAnonymizerBET.BitSetUtility - Class in gov.nih.mipav.model.algorithms: Private utility class for operations on BitSets
AlgorithmFacetModel - Class in gov.nih.mipav.model.algorithms
AlgorithmFacetModel(ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFacetModel(ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms.levelset: DOCUMENT ME!
AlgorithmFastMarching(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new ViewJFrameFastMarching3 object.
AlgorithmFastMarching(ModelImage, float[], int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: AnisotropicDiffusion.
AlgorithmFastMarching(ModelImage, int, int, float, float, float, float, float, int, float, float, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new AlgorithmFastMarching3 object.
AlgorithmFFT - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT2 - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT2(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFFT2(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFIREEdgeExtraction - Class in gov.nih.mipav.model.algorithms.filters: References: 1.)
AlgorithmFIREEdgeExtraction(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are returned to the source image.
AlgorithmFIREEdgeExtraction(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFlip - Class in gov.nih.mipav.model.algorithms.utilities: Flips 2D, 3D or 4D grays scale or color dataset about X, Y, or Z axis (when applicable) when AlgorithmFlip.IMAGE is passed to the constructor.
AlgorithmFlip(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.
AlgorithmFlip.ShapeHolder - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmFloodFill - Class in gov.nih.mipav.model.algorithms: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point3D) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFRAP - Class in gov.nih.mipav.model.algorithms: Fluorescence Recovery after PhotoBleaching Only 1 color will be used from a color image.
AlgorithmFRAP(ModelImage, boolean, boolean, boolean, int, int, int, int, int, boolean, int, boolean, boolean, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Creates a new AlgorithmFRAP object.
AlgorithmFRAP.distanceIntensityComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.distanceIntensityItem - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2i - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2p - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2s - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitIntensityProfile - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSineModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel3 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.IntModel - Class in gov.nih.mipav.model.algorithms: class IntModel extends Integration { public IntModel(double lower, double upper, int routine, double eps) { super(lower, upper, routine, eps); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModel2 - Class in gov.nih.mipav.model.algorithms: class IntModel2 extends Integration2 { public IntModel2(double lower, double upper, int routine, double breakPoints[], double epsabs, double epsrel, int limit) { super(lower, upper, routine, breakPoints, epsabs, epsrel, limit); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModelBessel - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.IntModelI0NuclearArea - Class in gov.nih.mipav.model.algorithms
AlgorithmFrequencyFilter - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilter.java.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilterColor.java.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFRETAcceptorPhotobleach - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETAcceptorPhotobleach(ModelImage, ModelImage, boolean, boolean, boolean, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: Creates a new AlgorithmFRETAcceptorPhotobleach object.
AlgorithmFRETBleedThrough - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETBleedThrough(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: Creates a new AlgorithmFRETBleedThrough object.
AlgorithmFRETEfficiency - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETEfficiency(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, float, float, float, float, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: Creates a new AlgorithmFRETEfficiency object.
AlgorithmFuzzMinDeAndChatterji - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzMinDeAndChatterji(ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzMinDeAndChatterji(ModelImage, ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmFuzzyCMeans(ModelImage[], ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyCMeans(ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyConnectednessSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmFuzzyConnectednessSegmentation(ModelImage[], ModelImage, int, int, double, double, Vector<Integer>, Vector<Short>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
AlgorithmFuzzyMinimization - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzyMinimization(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzyMinimization(ModelImage, ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmGaussianBlur - Class in gov.nih.mipav.model.algorithms.filters: The application of this algorithm blurs an image or VOI region of the image with a Gaussian function at a user defined scale (sigma - standard deviation).
AlgorithmGaussianBlur(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Creates a new AlgorithmGaussianBlur object.
AlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmGaussianBlurSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gaussian blur of an image at a scale defined by the user (using separable convolutions).
AlgorithmGaussianBlurSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Creates a new AlgorithmGaussianBlurSep object.
AlgorithmGaussianMixtureModelEM - Class in gov.nih.mipav.model.algorithms: Copyright (c) 1995 The Board of Trustees of Purdue University.
AlgorithmGaussianMixtureModelEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(int, int, String, String, String, String, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(String, String, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM.ClassData - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.ClassSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SigSet - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SubSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines(ModelImage, ModelImage, double, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
AlgorithmGradientInverseWeightedSmoothing - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmGradientInverseWeightedSmoothing(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientInverseWeightedSmoothing(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientMagnitude - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user.
AlgorithmGradientMagnitude(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitude(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitudeSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user (using separable convolutions).
AlgorithmGradientMagnitudeSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Creates a new AlgorithmGradientMagnitudeSep object.
AlgorithmGraphBasedSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation(ModelImage, ModelImage, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation: Constructs graph based segmentation algorithm.
AlgorithmGraphBasedSegmentation.edge - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.edgeComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.uni_elt - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.universe - Class in gov.nih.mipav.model.algorithms
AlgorithmGrayScaleMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathematical morphology class applied to Gray scale images. (2D morphology on 3D volumes).
AlgorithmGrayScaleMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmGrayScaleMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmGrayScaleMorphology25D object.
AlgorithmGrayScaleMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmGrayScaleMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmGrayScaleMorphology3D object.
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
AlgorithmGuidedFilter - Class in gov.nih.mipav.model.algorithms.filters: The MIT License (MIT) Copyright (c) 2014 Atilim Cetin Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmGuidedFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGuidedFilter(ModelImage, ModelImage, ModelImage, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmGVF(ModelImage, ModelImage, float[], int, int, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGVF: Creates a new AlgorithmGVF object.
AlgorithmHaralickTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmHarrisCornerDetector - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisCornerDetector() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector - default constructor.
AlgorithmHarrisCornerDetector(ModelImage, ModelImage, float, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector.
AlgorithmHarrisLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisLaplace() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace - default constructor.
AlgorithmHarrisLaplace(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace.
AlgorithmHeightFunction - Class in gov.nih.mipav.model.algorithms: The class generates a triangle or quad mesh of a 2D dataset (image) to be displayed in the surface viewer.
AlgorithmHeightFunction(ModelImage, int, String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Sets up variables needed by algorithm to run.
AlgorithmHepticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 7 which interpolates a given function f at the points x(-3), x(-2), x(-1), x(0), x(1), x(2), x(3), and x(4) and is given by p(x) = sum from i = -3 to i = 4 of li(x)*f(xi), where li, i = -3,-2,-1,0,1,2,3,4 which are called the fundamental polynomials, are given by li(x) = product from k = -3 to k = 4 for k !
AlgorithmHepticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: AlgorithmHepticLagrangian - default constructor.
AlgorithmHessian - Class in gov.nih.mipav.model.algorithms: Provides functions to convolve an image with the second derivitive of the Gaussian function to obtain the Hessian matrix for a particular point on the image.
AlgorithmHessian(ModelImage, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHessian: Creates a new AlgorithmHessian object.
AlgorithmHilbertTransform - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHilbertTransform(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
AlgorithmHillClimbingWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
AlgorithmHillClimbingWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmHistogram - Class in gov.nih.mipav.model.algorithms: Calculates the histogram for an image.
AlgorithmHistogram(ModelHistogram, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelHistogram, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object.
AlgorithmHistogram(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram.GrayLevelClass - Class in gov.nih.mipav.model.algorithms: Used specifally by the Otsu threshold algorithm to define a gray level object for calculating probabilities.
AlgorithmHistogram2Dim - Class in gov.nih.mipav.model.algorithms: This algorithm creates a two dimensional histogram of the data in 2 black and white images or 1 color image. if doLinearRescale is true, the range of data in the second image is rescaled to be the same as the range of data in the first image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, boolean, boolean, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, ModelImage, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogramMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches the transforms a match or source image so as to make its histogram equal to the histogram of a base image.
AlgorithmHistogramMatch(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramMatch(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHistogramSliceMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches or transforms a match or source slice so as to make its histogram equal to the histogram of a base slice.
AlgorithmHistogramSliceMatch(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramSliceMatch(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHMRF_EM - Class in gov.nih.mipav.model.algorithms: This is a port of the MATLAB files HMRF_EM.m and MRF_MAP.m written by Quan Wang to Java
AlgorithmHMRF_EM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM - default constructor.
AlgorithmHMRF_EM(ModelImage, ModelImage, int, int, float, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM.
AlgorithmHoughCardioid - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate theta0, a0 points in the Hough transform.
AlgorithmHoughCardioid() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid - default constructor.
AlgorithmHoughCardioid(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid.
AlgorithmHoughCircle - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate x0, y0, rad points in the Hough transform.
AlgorithmHoughCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle - default constructor.
AlgorithmHoughCircle(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle.
AlgorithmHoughEllipse - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate p, q, r1, r2, and theta points in the Hough transform.
AlgorithmHoughEllipse() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse - default constructor.
AlgorithmHoughEllipse(ModelImage, ModelImage, double, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse.
AlgorithmHoughHyperbola - Class in gov.nih.mipav.model.algorithms: This work is made possible by the following mathematical theorem proved by Professor Alan Horwitz of Penn State University: Finding the Center of a Hyperbola, H, given three nonparallel tangent lines to H and the corresponding points of tangency.
AlgorithmHoughHyperbola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola - default constructor.
AlgorithmHoughHyperbola(ModelImage, ModelImage, int, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola.
AlgorithmHoughLine - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate rho, theta points in the Hough transform.
AlgorithmHoughLine() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine - default constructor.
AlgorithmHoughLine(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine.
AlgorithmHoughParabola - Class in gov.nih.mipav.model.algorithms: [(y - vy)*cos(phi) - (x - vx)*sin(phi)]**2 = 4*p*[(y - vy)*sin(phi) + (x - vx)*cos(phi)] where vx, vy are the coordinates of the parabola vertex p is the distance between the vertex and focus of the parabola This Hough transform uses (xi, yi) points in the original image space to generate vx, vy, phi, p points in the Hough transform.
AlgorithmHoughParabola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola - default constructor.
AlgorithmHoughParabola(ModelImage, ModelImage, int, int, int, double, int, float, float, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola.
AlgorithmHurstIndex - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHurstIndex(ModelImage, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, int, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex(ModelImage, ModelImage, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, ModelImage, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex.DistanceIntensity - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHurstIndex.DistanceIntensityComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIAGCWD - Class in gov.nih.mipav.model.algorithms
AlgorithmIAGCWD() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIAGCWD(ModelImage, ModelImage, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIHN3Correction - Class in gov.nih.mipav.model.algorithms: N3 Inhomogeneity correction This is based on code by John G.
AlgorithmIHN3Correction(ModelImage, ModelImage, ModelImage, float, int, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Creates a new AlgorithmIHN3Correction object.
AlgorithmImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by by another image.
AlgorithmImageCalculator(ModelImage, ModelImage[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: constructor used for bulk images
AlgorithmImageCalculator(ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object using srcImgA srcImgB.
AlgorithmImageCalculator(ModelImage, ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object.
AlgorithmImageHessian - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmImageHessian(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageMath - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by some user specified value.
AlgorithmImageMath(ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath(ModelImage, ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath.Operator - Enum in gov.nih.mipav.model.algorithms.utilities
AlgorithmIndependentComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 2D and 3D black and white and color images.
AlgorithmIndependentComponents(ModelImage[], ModelImage[], int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmIndependentComponents(ModelImage[], ModelImage, int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmInsertSlice - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to insert a slice.
AlgorithmInsertSlice(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Import source and destination images into the class.
AlgorithmInsertVolume - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmInsertVolume(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Import source and destination images into the class.
AlgorithmInterface - Interface in gov.nih.mipav.model.algorithms: The interface used by all classes which want to respond to the conclusion of an algorithm.
AlgorithmIsophoteCurvature - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIsophoteCurvature(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIsophoteCurvature(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmIteratedBlindDeconvolution(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Creates a new AlgorithmIteratedBlindDeconvolution object.
AlgorithmKernelRegression - Class in gov.nih.mipav.model.algorithms.filters: This is a port of MATLAB routines contained in kernelRegressionBasedImageProcessingToolBox_ver1-2beta written by Hiroyuki Takeda, Sina Farsiu, and Peyman Milanfar.
AlgorithmKernelRegression(ModelImage, ModelImage, int, boolean, boolean, boolean, double, boolean, double, boolean, double, float, float, float, int, int, int, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Creates a new AlgorithmKernelRegression object.
AlgorithmKMeans - Class in gov.nih.mipav.model.algorithms: This program can be run on data of any dimensionality.
AlgorithmKMeans(ModelImage, int, int, double[][], double[], int[], double[], double[][], String, int, float[], float[], float[], double, boolean, boolean, double[], boolean, double[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans
AlgorithmKMeans.positionWeightComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmKMeans.positionWeightItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLaplacian - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLaplacian(ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean[], boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess - Class in gov.nih.mipav.model.algorithms: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLawsTexture - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLawsTexture(ModelImage[], ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
AlgorithmLearnFromFailure64 - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLevelSet - Class in gov.nih.mipav.model.algorithms: This algorithm iteratively expands or contracts one or more contours to a boundary.
AlgorithmLevelSet(ModelImage, float[], int, int, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: LevelSet.
AlgorithmLevelSetDiffusion - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmLevelSetDiffusion(ModelImage, float[], int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: AnisotropicDiffusion.
AlgorithmLLE - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE(ModelImage, ModelImage, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE: Creates a new AlgorithmLLE object.
AlgorithmLLE.distanceIndexComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE.distanceIndexItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLoadB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage.AlgorithmLoadB
AlgorithmLocalNormalization - Class in gov.nih.mipav.model.algorithms.filters: Local Normalisation equalises colour levels among pixels by removing variations due to lighting; this brings out contrasts in detail.
AlgorithmLocalNormalization(ModelImage, ModelImage, float[], double, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: This constructor initialises a Local normalisation algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.FLOAT.
AlgorithmLocalVariance - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLocalVariance(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmLogSlopeMapping - Class in gov.nih.mipav.model.algorithms
AlgorithmLogSlopeMapping(ModelImage, ModelImage[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping
AlgorithmLowerCompletion - Class in gov.nih.mipav.model.algorithms
AlgorithmLowerCompletion(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
AlgorithmLuminanceAdaptation - Class in gov.nih.mipav.model.algorithms
AlgorithmLuminanceAdaptation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmLuminanceAdaptation(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmMarkovSegment - Class in gov.nih.mipav.model.algorithms
AlgorithmMarkovSegment(ModelImage, ModelImage, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
AlgorithmMarkovSmooth - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmMarkovSmooth(ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMarkovSmooth(ModelImage, ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMask - Class in gov.nih.mipav.model.algorithms.utilities: Allow the user to fill a VOI or fill everything outside the VOI with a specific fill value.
AlgorithmMask(ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, Color, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMatchForReference - Class in gov.nih.mipav.model.algorithms: Will take Two 2D images (one Reference, one Adjusted) and use the Reference image's Resolutions to transform the adjusted Image into a new size and resolution that the Reference Image can then be matched to, while preserving all Field of Views (there is no loss of FOV).
AlgorithmMatchForReference(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Constructor.. takes in a reference and adjusted modelImage
AlgorithmMatchImages - Class in gov.nih.mipav.model.algorithms.utilities: Matches two ModelImages.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMaximumIntensityProjection - Class in gov.nih.mipav.model.algorithms.utilities: Computes the maximum or the minimum intensity along each projection of a 3D image.
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection in each direction of a 3D black and white image
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection of a 3D color image
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: An implementation of Maximum Likelihood Iterated Blind Deconvolution based on the following papers:
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution(ModelImage, int, int, float, float, float, boolean, int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Creates a new AlgorithmMaximumLikelihoodIteratedBlindDeconvolution object.
AlgorithmMean - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a mean filter to an image, placing it in a new ModelImage if New image is selected or returning the changed picture to the same image if Replace image is selected.
AlgorithmMean(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMean(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMeanShiftClustering - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftClustering(ModelImage, int, int, int, String, String, int, int, double, boolean, float, boolean, float, int, int, boolean, int, int, float[], ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: File formats: Files are all ASCII files.
AlgorithmMeanShiftClustering.fams_cut - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry2 - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_res_cont - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.famsPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftSegmentation(ModelImage, ModelImage, AlgorithmMeanShiftSegmentation.kernelType, AlgorithmMeanShiftSegmentation.kernelType, float, float, int, AlgorithmMeanShiftSegmentation.SpeedUpLevel, boolean, double, double[], boolean, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
AlgorithmMeanShiftSegmentation.ClassStateStruct - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.kernelType - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RAList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.REGION - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RegionList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.SpeedUpLevel - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.userWeightFunct - Class in gov.nih.mipav.model.algorithms
AlgorithmMedian - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a median filter to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMidsagittal - Class in gov.nih.mipav.model.algorithms: Finds the midsagittal line of a brain MRI by: Flipping the image horizontally. Registering the flipped image against the original. Getting the angle that the registration rotated the image. Transforming the original image by half the registration rotation.
AlgorithmMidsagittal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Construct the midsagittal algorithm.
AlgorithmMinimumPerimeterPolygon - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with minimum perimeter polygon.
AlgorithmMinimumPerimeterPolygon() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
AlgorithmMinimumPerimeterPolygon(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Creates a new AlgorithmMinimumPerimeterPolygon object.
AlgorithmMixGaussEM - Class in gov.nih.mipav.model.algorithms
AlgorithmMixGaussEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
AlgorithmMixGaussEM.model - Class in gov.nih.mipav.model.algorithms
AlgorithmMode - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmMode applies one of the user specified kernels to a 2D or 3D BYTE, SHORT, INTEGER, UBYTE, USHORT, UINTEGER.
AlgorithmMode(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMorphologicalFilter - Class in gov.nih.mipav.model.algorithms.filters: Performs morphological filtering on black and white images.
AlgorithmMorphologicalFilter(ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphologicalFilter(ModelImage, ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathmatical morphology class (2D morphology on 3D volumes).
AlgorithmMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathmatical morphology class.
AlgorithmMorphology2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
AlgorithmMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathmatical morphology class.
AlgorithmMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMosaicToSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm requires input of 2D or 3D mosaics.
AlgorithmMosaicToSlices(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Creates a new AlgorithmMosaicToSlices object.
AlgorithmMRIShadingCorrection - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmMRIShadingCorrection(ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMRIShadingCorrection(ModelImage, ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMSER - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER(ModelImage, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER
AlgorithmMSER.VlMserExtrReg - Class in gov.nih.mipav.model.algorithms: Extremal regions (ER) are extracted from the region forest.
AlgorithmMSER.VlMserFilt - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER.VlMserReg - Class in gov.nih.mipav.model.algorithms: Extremal regions and maximally stable extremal regions are instances of image regions.
AlgorithmMSER.VlMserStats - Class in gov.nih.mipav.model.algorithms
AlgorithmMSpectralFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmMSpectralFuzzyCMeans(ModelImage[], ModelImage[], int, int, int, int, float, float, float, boolean, int, boolean, int, float, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: AlgorithmMSpectralFuzzyCMeans - Constructor.
AlgorithmMultiExponentialFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmMultiExponentialFitting() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmMultiExponentialFitting(int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int, double[], int, double[], double[], int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmN4MRIBiasFieldCorrectionFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmN4MRIBiasFieldCorrectionFilter(ModelImage, ModelImage, ModelImage, int, double, double, double, int, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Constructor which sets the source and destination images
AlgorithmNearlyCircleToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of a nearly circular region to a circle.
AlgorithmNearlyCircleToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle - default constructor.
AlgorithmNearlyCircleToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle.
AlgorithmNetworkSnake - Class in gov.nih.mipav.model.algorithms: Copyright (c) 2011, The University of Nottingham All rights reserved.
AlgorithmNetworkSnake(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake
AlgorithmNetworkSnake.AnchorPosition - Enum in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ExtentionMath - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.IMetadataProvider - Interface in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Metadata - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.NetworkSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Pixel - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid.PixelGridNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.Node - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.tuple2i - Class in gov.nih.mipav.model.algorithms
AlgorithmNLNoiseReduction - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the SUSAN Nonlinear Noise reduction program.
AlgorithmNLNoiseReduction(ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNLNoiseReduction(ModelImage, ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNMSuppression - Class in gov.nih.mipav.model.algorithms.filters: Calculates the non-maximum suppression of an image at a scale defined by the user Edges are defined as the union of points for which the gradient magnitude assumes a maximum in the gradient direction.
AlgorithmNMSuppression(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNoise - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm used to add Gaussian, Poisson, Uniform, Rayleigh, or Rician noise to an image.
AlgorithmNoise(ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNoise(ModelImage, ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNonlocalMeansFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the 09/03/2006 NLmeansfilter.m and UNLmeansfilter2.m on 02/15/2008 by Jose Vicente Manjon Herrera & Antoni Buades.
AlgorithmNonlocalMeansFilter(ModelImage, ModelImage, int, int, boolean, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Creates a new AlgorithmNonlocalMeans object.
AlgorithmNonMaxSuppts - Class in gov.nih.mipav.model.algorithms
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonparametricSegmentation - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmNonparametricSegmentation(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmNonparametricSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmObjectExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting objects.
AlgorithmObjectExtractor(ModelImage, VOI, boolean, boolean, TriMesh, float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Create an extractor for segmenting an object from an image.
AlgorithmObjectExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmObjectExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmOptimizeFunctionBase - Interface in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmParameters - Class in gov.nih.mipav.view.dialogs: This class standardizes the parameter names given to many common parameters used in algorithms.
AlgorithmParameters() - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to record the current parameters entered into the algorithm's GUI by the user.
AlgorithmParameters(ParameterTable) - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to set up the algorithm's GUI from stored parameters.
AlgorithmPbBoundaryDetection - Class in gov.nih.mipav.model.algorithms: Compute probability of boundary using brightness gradient and texture gradient Original MATLAB code written by David R.
AlgorithmPbBoundaryDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection - default constructor.
AlgorithmPbBoundaryDetection(ModelImage, ModelImage, int, int, double, double, int, String, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection.
algorithmPerformed() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
algorithmPerformed(AlgorithmBase) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmInterface: Called after an algorithm this listener is registered to exits (maybe successfully, maybe not).
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.MotionDetection
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Respond to the completion or failure of the algorithm we called.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: algorithmPerformed this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: This method is required if the AlgorithmInterface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: method that is called after algorithm is finished.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Algorithm notifies dialog of status.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: When the morphology algorithm finish running, this method is invoked.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Called when the AlgorithmMaximumLikelihoodIteratedBlindDeconvolution has finished processing the source image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: If the destination image is not null, put in frame.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: the standard thread-done event for AlgorithmBase.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Called when AlgorithmDWI2DTI is done creating the DTI image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: empty function to implement the algorithm interface.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: This method is required if the AlgorithmPerformed interface is implemented.
AlgorithmPhaseCongruency - Class in gov.nih.mipav.model.algorithms: Ported from Peter Kovesi's MATLAB code for Phase Congruency Available from: http://www.csse.uwa.edu.au/~pk/research/matlabfns/PhaseCongruency/phasecong3.m and: http://www.csse.uwa.edu.au/~pk/research/matlabfns/FrequencyFilt/lowpassfilter.m in reference to the method lowpassFilter(); % References: % % Peter Kovesi, "Image Features From Phase Congruency".
AlgorithmPhaseCongruency(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
AlgorithmPointArea - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmPointArea(ModelImage, int, int, int, int, boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPointArea: Creates a new AlgorithmPointArea object.
AlgorithmPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
AlgorithmPowellOpt2D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 2D image.
AlgorithmPowellOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmPowerWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of C code written by Camille Couprie in 2009.
AlgorithmPowerWatershed(ModelImage, ModelImage, int, Vector<Integer>, Vector<Short>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed: Constructs Power watershed algorithm.
AlgorithmPowerWatershed.Lifo - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.Rbt - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.RbtElt - Class in gov.nih.mipav.model.algorithms
AlgorithmPrincipalComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 3D black and white images and on 2D and 3D color images.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, ModelImage, boolean, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmProstateBoundaryExt - Class in gov.nih.mipav.model.algorithms.filters: This algorithm traces the prostate boundary from the target image, non prostate binary mask image and prostate boundary binary mask image.
AlgorithmProstateBoundaryExt(ModelImage, ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Constructor
AlgorithmProstateBoundaryExt.Edge - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryExt.PointAttribute - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryFeature2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateBoundaryFeature2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmProstateFeatures2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeaturesSaveAutoTrain - Class in gov.nih.mipav.model.algorithms.filters: This class save the Coherence Enhanced Diffusion (CED) 2D slice based features, which are Hurst index and Haralick features.
AlgorithmProstateFeaturesSaveAutoTrain(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Constructor.
AlgorithmQuadraticFit - Class in gov.nih.mipav.model.algorithms: Approximate a set of points by a quadric surface.
AlgorithmQuadraticFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Fit a set of 3D points with a quadric surface.
AlgorithmQuantify - Class in gov.nih.mipav.model.algorithms: Quantify image data based on a mask image.
AlgorithmQuantify(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuantify: Creates a new AlgorithmQuantify object.
AlgorithmQuantifyMask - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that does basic calculations on Mask images (boolean/ubyte/short) calculates Center of Mass, area (in resolutions), and number of pixels per mask
AlgorithmQuantifyMask(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask: Creates a new AlgorithmMask object.
AlgorithmQuinticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 5 which interpolates a given function f at the points x(-2), x(-1), x(0), x(1), x(2), and x(3) and is given by p(x) = sum from i = -2 to i = 3 of li(x)*f(xi), where li, i = -2,-1,0,1,2,3 which are called the fundamental polynomials, are given by li(x) = product from k = -2 to k = 3 for k !
AlgorithmQuinticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: AlgorithmQuinticLagrangian - default constructor.
AlgorithmRandSliceOrder - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that randomizes the order of 3D dataset.
AlgorithmRandSliceOrder(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRandSliceOrder(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRegBSpline - Class in gov.nih.mipav.model.algorithms.registration: This is a common base class which provides common methods and data members for all BSpline based registration.
AlgorithmRegBSpline(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Constructor.
AlgorithmRegBSpline.Options - Class in gov.nih.mipav.model.algorithms.registration: Data structure which contains the parameters or options used to perform a BSpline based registration of two images.
AlgorithmRegBSpline25D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2.5D images.
AlgorithmRegBSpline25D(ModelImage, ModelImage, int, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Constructor.
AlgorithmRegBSpline2D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2D images.
AlgorithmRegBSpline2D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: Constructor.
AlgorithmRegBSpline3D - Class in gov.nih.mipav.model.algorithms.registration: BSpline registration of 3D images.
AlgorithmRegBSpline3D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: Constructor.
AlgorithmRegChamfer - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegChamfer First slice is template (base image) to which match image is registered.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs a new registration algorithm.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs new registration algorithm.
AlgorithmRegChamfer.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: Class for specifying optimization function for AlgorithmSimplexOpt.
AlgorithmRegELSUNCOAR25D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR25D(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR25D(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegionGrow - Class in gov.nih.mipav.model.algorithms: Fills a region based on average intensity +or- standard deviation.
AlgorithmRegionGrow(ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionGrow(ModelImage, ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionMergingViaBoundaryMelting - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionMergingViaBoundaryMelting(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting: Creates a new AlgorithmRegionMergingViaBoundaryMelting object.
AlgorithmRegionMergingViaBoundaryMelting.mergeItem - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders(ModelImage, ModelImage, double, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders: Creates a new AlgorithmRegionsFromPartialBorders object.
AlgorithmRegLeastSquares - Class in gov.nih.mipav.model.algorithms.registration: "Least-Squares Fitting of 2 3-D Point Sets", K.
AlgorithmRegLeastSquares(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegLeastSquares(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegOAR25D2 - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR25D2(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR25D2(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegPatientPos - Class in gov.nih.mipav.model.algorithms.registration: Use origin and image orientations to align images based on patient position.
AlgorithmRegPatientPos(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Creates new algorithm.
AlgorithmRegularizedIsotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Regularized Isotropic Nonlinear Diffusion as described by:
AlgorithmRegularizedIsotropicDiffusion(ModelImage, ModelImage, int, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Creates a new AlgorithmRegularizedIsotropicDiffusion object.
AlgorithmRegValidation - Class in gov.nih.mipav.model.algorithms.registration: Uses a selected RegistrationMeasure and the user-specified points to output the relevant measure back to the user.
AlgorithmRegValidation(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegValidation(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegVOILandmark - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegVOILandmark First slice is template (base image) to which subsequent slices are registered.
AlgorithmRegVOILandmark(ModelImage, ModelImage, float[], boolean, VOIBase, double, double, double, double, double, double, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Constructor.
AlgorithmRegVOILandmark.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: CostFunction - class for specifying optimization function for AlgorithmSimplexOpt slice - current fluoroscopy slice being operated on.
AlgorithmRemoveSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm verifies the z-th slice should be in included in the destination image, as defined in the list, remove.
AlgorithmRemoveSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Import source and destination images into the class.
AlgorithmRemoveTSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to run the remove T slices.
AlgorithmRemoveTSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: import source and destination images into the class.
AlgorithmReplaceBlankSlicesWithAverages - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmReplaceBlankSlicesWithAverages(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceRemovedSlices - Class in gov.nih.mipav.model.algorithms.utilities: This algorithm is used to insert averaged slices where slices have been removed -If slices were removed at the beginning of the original movie, these slices will not be replaced. - Slices are only inserted between the first and last kept slices
AlgorithmReplaceRemovedSlices(ModelImage, boolean[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Constructor for algorithm.
AlgorithmReplaceSlice - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmReplaceSlice(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceValue - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmReplaceValue
AlgorithmReplaceValue(ModelImage, ModelImage, Vector<JDialogReplaceValue.Values>, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Default contructor.
AlgorithmReslice - Class in gov.nih.mipav.model.algorithms.utilities: Reslices 3D image into (isotropic)cubic voxels.
AlgorithmReslice(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Creates new algorithm for reslicing to isotropic voxels.
AlgorithmRGBConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates an RGB image from three gray images.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBtoGray - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmRGBtoGray(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGrays - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a red, green, and blue greyscale images.
AlgorithmRGBtoGrays(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Creates a new AlgorithmRGBtoGrays object.
AlgorithmRGBtoHSB - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a hue, saturation and brightness greyscale images.
AlgorithmRGBtoHSB(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Creates a new AlgorithmRGBtoHSB object.
AlgorithmRiceWaveletTools - Class in gov.nih.mipav.model.algorithms.filters: This "rice-wlet-tools", version 2.4 Released - CONDITIONS FOR USE: Copyright (c) 2000 RICE UNIVERSITY.
AlgorithmRiceWaveletTools() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, double[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools.EigenvalueComplex - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRiceWaveletTools.EigenvalueComplexComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRotate - Class in gov.nih.mipav.model.algorithms.utilities: An Algorithm to rotate 3D or 4D dataset 90 or 180 degrees about X, Y, or Z axis. 2D Images can also be rotated.
AlgorithmRotate(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRuleBasedContrastEnhancement - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses an equation with 3 membership functions, udark, ugray, and ubright, to transform a gray level g to a new gray level g' for histogram enhancement.
AlgorithmRuleBasedContrastEnhancement(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are returned to the source image.
AlgorithmRuleBasedContrastEnhancement(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmScaleSaliency - Class in gov.nih.mipav.model.algorithms: Original source code in C and MATLAB is Copyright 1998-2004 by Timor Kadir Version 1.5 Kadir/Brady Feature detector (Scale Saliency) Code For non-commercial use only Ported by to Java by William Gandler References: 1.)
AlgorithmScaleSaliency() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency: AlgorithmScaleSaliency - default constructor.
AlgorithmScaleSaliency(ModelImage, int, int, int, int, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
AlgorithmScaleSaliency.sixItems - Class in gov.nih.mipav.model.algorithms
AlgorithmScaleSaliency.sixItemsComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
AlgorithmSeparableConvolver - Class in gov.nih.mipav.model.algorithms: Convolves an image with a separable (symmetric) kernel and returns the result.
AlgorithmSeparableConvolver(float[], int[], float[][], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Sets destination, source, and kernel buffers.
AlgorithmSeparableConvolver(float[], int[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
AlgorithmSequentialScanningWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
AlgorithmSequentialScanningWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSFTA
AlgorithmShortestPathWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
AlgorithmShortestPathWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSimulatedExposureFusion(ModelImage, ModelImage, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSingleMRIImageSNR - Class in gov.nih.mipav.model.algorithms: This program uses a mandatory signal 1 VOI, an optional signal 2 VOI, a mandatory noise background VOI, and the number of NMR receivers to calculate the signal to noise ratio for the signal VOI(s).
AlgorithmSingleMRIImageSNR(ModelImage, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: Creates a new AlgorithmSingleMRIImageSNR object.
AlgorithmSkullRemoval - Class in gov.nih.mipav.model.algorithms: Algorithm Implementation 1.
AlgorithmSkullRemoval(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSkullRemoval(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSliceAveraging - Class in gov.nih.mipav.model.algorithms.filters: This algorithm averages together slices of a 3D image.
AlgorithmSliceAveraging(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSliceAveraging(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSM2 - Class in gov.nih.mipav.model.algorithms: Based on the document provided by Daniel Reich: Notes on DCE with SM2 (standard model, aka Tofts model, 2-compartment) 3 model parameters are fit for each voxel in 3D: 1) K_trans in [1.0E-5, 5.0] in /min On input ktrans is converted from /min to /sec and on output ktrans is converted from /sec to /min. 2) ve in [1.0E-5, 0.99] 3) f_vp in [0, 0.99] srcImage is a dynamic "4D volume" of MRI signal (3D over time).
AlgorithmSM2(ModelImage[], ModelImage, double[], double[], double[], ModelImage, double[], double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2: Creates a new AlgorithmDEMRI3 object.
AlgorithmSM2.FitAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllEP - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllNL2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModelC - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2nl2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2All - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2EPAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.IntModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.sm2Task - Class in gov.nih.mipav.model.algorithms
AlgorithmSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmSnake(ModelImage, float[], int, float, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSnake: Set up the snake algorithm so that it can be run.
AlgorithmSobel - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSobel(ModelImage, ModelImage, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
AlgorithmSpectralClustering - Class in gov.nih.mipav.model.algorithms
AlgorithmSpectralClustering(ModelImage, double[][], double[], int[], double[][], String, float[], float[], float[], double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
AlgorithmSphereGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned spheres with a specified radius.
AlgorithmSphereGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmSphereGeneration - default constructor.
AlgorithmSphereGeneration(ModelImage, int, int, int, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmRandomSphereGeneration.
AlgorithmSphereGeneration.IntModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed(ModelImage, ModelImage, int, boolean, int, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
AlgorithmSplitAndMergeWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmStandardDeviationThreshold - Class in gov.nih.mipav.model.algorithms: The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated.
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for grey scale image
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for color image
AlgorithmSubsample - Class in gov.nih.mipav.model.algorithms.utilities: Takes in an image and subsamples it to a new set of dimensions.
AlgorithmSubsample(ModelImage, ModelImage, int[], int[], float[], boolean, boolean, TransMatrix, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Setup for a later subsampling of an image.
AlgorithmSubset - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to create a 3D subset image from a 4D image.
AlgorithmSubset(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: import source and destination images into the class.
AlgorithmSubtractVOI - Class in gov.nih.mipav.model.algorithms: Algorithm that subtracts the mean or median value of a VOI from the image.
AlgorithmSubtractVOI(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSubtractVOI(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSwap34 - Class in gov.nih.mipav.model.algorithms.utilities: Swaps third and fourth dimensions in 4D dataset.
AlgorithmSwap34(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Constructs new algorithm and sets source.
AlgorithmSwapDims - Class in gov.nih.mipav.model.algorithms.utilities: Swaps dimensions in 4D dataset.
AlgorithmSwapDims(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Constructs new algorithm and sets source.
AlgorithmSwapSlicesVolume - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmSwapSlicesVolume
AlgorithmSwapSlicesVolume(ModelImage, JDialogSwapSlicesVolumes.SwapMode, int[][], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Import source and destination images into the class.
AlgorithmSWI - Class in gov.nih.mipav.model.algorithms.filters: This class recalculates mo and dceFullTre to provide better estimates using the inverse Ernst equation
AlgorithmSWI(boolean, ModelImage, ModelImage, ModelImage, double, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Constructor.
AlgorithmSymmetricNearestNeighbor - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSymmetricNearestNeighbor(ModelImage, ModelImage, boolean, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
AlgorithmTalairachTransform - Class in gov.nih.mipav.model.algorithms: Performs original to ACPC, original to Talairach, ACPC to original, ACPC to Talairach, Talairach to original, or Talairach to ACPC transformation.
AlgorithmTalairachTransform(ModelImage, ModelImage, TalairachTransformInfo, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Creates a new AlgorithmTalairachTransform object.
AlgorithmTamuraTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmTamuraTexture(ModelImage[], ModelImage, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for black and white image.
AlgorithmTamuraTexture(ModelImage[], ModelImage, int, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for color image.
AlgorithmTextureAnalysis - Class in gov.nih.mipav.model.algorithms: Overview This code contains the texture analysis functions for the paper `Texture Analysis and Segmentation Using Modulation Features, Generative Models, and Weighted Curve Evolution', by I.
AlgorithmTextureAnalysis(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
AlgorithmTextureSegmentation - Class in gov.nih.mipav.model.algorithms: This software implements the factorization-based segmentation algorithm.
AlgorithmTextureSegmentation(ModelImage, ModelImage, int, int, Vector3f[], BitSet, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
AlgorithmThinning2D - Class in gov.nih.mipav.model.algorithms
AlgorithmThinning2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D: AlgorithmThinning2D - default constructor.
AlgorithmThinning2D(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D
AlgorithmThresholdDual - Class in gov.nih.mipav.model.algorithms: This algorithm has two modes of operation:
AlgorithmThresholdDual(ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDual(ModelImage, ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDualRGB - Class in gov.nih.mipav.model.algorithms: Runs threshold (lower and upper) on color images and replaces values either outside (inverse) or inside (normal) with the fill values specified.
AlgorithmThresholdDualRGB(ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm on and modifying source image.
AlgorithmThresholdDualRGB(ModelImage, ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm into a destination image.
AlgorithmTiltCorrection - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmTiltCorrection(ModelImage, ModelImage, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
AlgorithmTimeFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[], boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting.FitExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitGaussian - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLine - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLorentz - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitMultiExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitRayleigh - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.fittingTask - Class in gov.nih.mipav.model.algorithms
AlgorithmTProcess - Class in gov.nih.mipav.model.algorithms: This abstract class defines terms common to both T1 and T2 processing, such as thresholding and multithreading management methods.
AlgorithmTProcess() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess.CalculateT - Class in gov.nih.mipav.model.algorithms
AlgorithmTPSpline - Class in gov.nih.mipav.model.algorithms: Thin plate spline Warning: If the supplied (x,y) data set in setupTPSpline2D is nearly collinear, singular matrices will result and a matrix inversion will fail.
AlgorithmTPSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - default constructor.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 2D case.
AlgorithmTPSpline(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: Constructor used when N, xDimA, yDimA, zDimA, x[], y[], z[], and C[][] are read from a file
AlgorithmTranscode - Class in gov.nih.mipav.model.algorithms: Title:
AlgorithmTranscode(URL, String, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Creates a new AlgorithmTranscode object.
AlgorithmTransform - Class in gov.nih.mipav.model.algorithms: Transforms Volume by resampling using transformation matrix and the choice of nearest-neighbor, trilinear interpolation, 3rd order Bspline, 4th order Bspline, cubic Lagrangian, quintic Lagrangian, heptic Lagrangian, or windowed sinc.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 3D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 2D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransformBSpline - Class in gov.nih.mipav.model.algorithms: TransformBSpline algorithm This algorithm takes a source image and uses information read in from a .nlt file to perform a nonlinear B-Spline transformation on the image.
AlgorithmTransformBSpline(ModelImage, float[], int[], int, int, float[][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformBSpline(ModelImage, float[], int, int, float[][][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformVOI - Class in gov.nih.mipav.model.algorithms
AlgorithmTransformVOI(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
AlgorithmTreParams - Interface in gov.nih.mipav.view.dialogs: This interface contains convenience enumerations for going between the dialog and algorithm of the TRE framework.
AlgorithmTreParams.FieldStrength - Enum in gov.nih.mipav.view.dialogs: Specifies the magnetic field strength of the scanner used.
AlgorithmTreParams.InversionType - Enum in gov.nih.mipav.view.dialogs: Specifies the inversion method used for the scan.
AlgorithmTreParams.ScannerType - Enum in gov.nih.mipav.view.dialogs: Designates the brand of scanner used for processing.
AlgorithmTreParams.Threshold - Enum in gov.nih.mipav.view.dialogs: A three way boolean operator to designate the thresholding option used.
AlgorithmTreT1 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT1(double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1(ModelImage, ModelImage, double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1.CalculateT1 - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT2 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT2(ModelImage, ModelImage, JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTreT2(JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTrilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of openCVtrilateralFilter.h and openCVtrilateralFilter.cpp written by Tobi Vaudrey.
AlgorithmTrilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTrilateralFilter(ModelImage, ModelImage, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTwoMRIImagesSNR - Class in gov.nih.mipav.model.algorithms: This module implements the National Electrical Manufacturers Association (NEMA) standard for SNR estimation in diagnostic MRI.
AlgorithmTwoMRIImagesSNR(ModelImage, ModelImage, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: Creates a new AlgorithmTwoMRIImagesSNR object.
algorithmType - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
AlgorithmUnionFindComponentLabelling - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindComponentLabelling(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
AlgorithmUnionFindWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
AlgorithmUnionFindWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmUnsharpMask - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Unsharp Mask of an image at a scale defined by the user ( unsharp image = original image - weight * blurred image); weight < 1;
AlgorithmUnsharpMask(ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmUnsharpMask(ModelImage, ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmVesselEnhancement - Class in gov.nih.mipav.model.algorithms
AlgorithmVesselEnhancement(ModelImage, ModelImage, double[][], double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
AlgorithmVOIExtraction - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtraction(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Creates a new AlgorithmVOIExtraction object.
AlgorithmVOIExtractionPaint - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtractionPaint(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Constructor for finding the borders of the paint on various slices of an image.
AlgorithmVOIExtractionPaint(ModelImage, BitSet, int, int, int, short) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Construct the extractor for paint extraction to a VOI.
AlgorithmVOIHausdorffDistance - Class in gov.nih.mipav.model.algorithms: Algorithm class for finding Hausdorff distance on 2 VOIs
AlgorithmVOIHausdorffDistance(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance: constructor
AlgorithmVOILogicalOperations - Class in gov.nih.mipav.model.algorithms: Algorithm class for performing logical operations on VOIs
AlgorithmVOILogicalOperations(ModelImage, ViewVOIVector, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: constructor
AlgorithmVOIProps - Class in gov.nih.mipav.model.algorithms: This class calculates a properties of an image defined by a VOI.
AlgorithmVOIProps(ModelImage, int, JPanelPixelExclusionSelector.RangeType, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. note that if there are no VOIs to act on, this constructor returns quietly.
AlgorithmVOIProps(ModelImage, int, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor.
AlgorithmVOIProps(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. sets the source image of the algorithm, and presets the algorithm to calculate properties of 3D images as a volume of interest, rather than by slice.
AlgorithmVOIProps.Calc34D - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIProps.Calc34D.ContourStats - Class in gov.nih.mipav.model.algorithms: Stores the statistics for a single contour, color or grayscale.
AlgorithmVOIShapeInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIShapeInterpolation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOIShapeInterpolation(ModelImage, int, VOIContour, int, VOIContour, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOISimplexOpt - Class in gov.nih.mipav.model.algorithms: Perform Simplex Optimization on a VOI that has been propagated to a slice to find a transformation which will make an affine "fit" a structure which the VOI fit on the previous slice (used in RFASegTool when propagating liver segmentation VOIs).
AlgorithmVOISimplexOpt(ModelImage, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt(ModelImage, VOIContour, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt.CostFunction - Class in gov.nih.mipav.model.algorithms: Class for specifying optimization function for the simplex opt algorithm.
AlgorithmWatershed - Class in gov.nih.mipav.model.algorithms: This program applies the watershed algorithm to the image.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed.Seed - Class in gov.nih.mipav.model.algorithms: Simple class to hold seed point and basin (object label) value.
AlgorithmWaveletFuse - Class in gov.nih.mipav.model.algorithms.filters: MIT License Copyright (c) 2021 Hans Brouwer, Riyo Wanagiri Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmWaveletFuse() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletFuse(ModelImage, ModelImage, ModelImage, int, PyWavelets.WAVELET_NAME[], int[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletThreshold - Class in gov.nih.mipav.model.algorithms.filters: In hard thresholding a wavelet coefficient whose magnitude is below the product of threshold and the maximum wavelet magnitude is zeroed, and a wavelet coefficient whose magnitude is greater than or equal to the product is left unchanged.
AlgorithmWaveletThreshold(ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWaveletThreshold(ModelImage, ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWSinc - Class in gov.nih.mipav.model.algorithms: Sinc function windowed with Hanning window function used for interpolation This function will create images with greater maximums and lower minimums than the original image, so if the input image type is BYTE or UBYTE, the output image type should be a SHORT.
AlgorithmWSinc() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWSinc: AlgorithmWSinc - default constructor.
algoRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
algoSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
algoSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algoSepConvolver - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverB - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverG - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverR - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSub - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
algoTal - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: or if the source image is to be replaced.
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
algoTransB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: The algorithm.
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Algorithm for computing VOI statistics
alias - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alias - Variable in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
aliasButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
aliasField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
aliasField - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
aliasLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alignAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: DOCUMENT ME!
alignmentXfrm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
AlignShapes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Alight shapes
AlignShapes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Normalizes all shapes with respect to position, scale and orientation.
AlignTo(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Wrapper to align this to ref.
AlignTo(CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Aligns this to 'ref' with respect to pose.
AlignTo(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
AlignTo(CDVector, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Linear alignment of this vector to another vector using the L2 norm.
AlignTransformation(CAAMShape, double[], double[], CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the transformation that aligns this to 'ref' with respect to pose.
alim - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
alim - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The left end points of the subintervals in the partition of the given integration range (lower, upper).
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The left end points of the subintervals in the partition of the given integration range (lower, upper).
ALIVE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
all - Variable in class gov.nih.mipav.model.algorithms.libdt.Range
ALL - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Move all the channel transfer functions.
ALL - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Display all files.
ALL - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Move all the channel transfer functions.
all_covariance_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ALL_READERS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
allActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Set to true when all contours of a VOI are active.
ALLBACKGROUNDS - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
allButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
allclasses - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
alloc - Variable in class gov.nih.mipav.model.algorithms.KDTree
alloc_barray(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_fs_workspace(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_funny_pointers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_resnode() - Method in class gov.nih.mipav.model.algorithms.KDTree
alloc_sarray8(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_sarray9to12(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
allocate_edge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_face_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_halfedge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_vertex_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODE
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODEEP
allocateCompressStructures() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
allocateData() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Allocates data based on the data type and dataSize.
allocateElement() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: Allocates a new element for the PixelConvertingSpliterator (will be called once per split)
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
allocateMemory(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Method that actually allocates the memory.
AllocateMemory() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
allocateTemporaryBufferInterleaved(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
allocateTemporaryBufferPlanar(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
AllocateUserFields() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Allocates room for the three user defined fields.
Allocator<T> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Allocator() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
AllocatorState - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AllocatorState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
allowableBlockSize - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
allowChangesMinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the min and max boundaries *
allowChangesWin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the window and level boundaries *
allowDataWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: If true, allow data window output
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowPaddedWarping - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
allPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: true if no slices are missing.
allRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
allRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
allSeamCellIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
allSlices - Variable in class gov.nih.mipav.model.structures.VOIProtractor: Set to true, displays this protractor object for any z-value.
allSlicesRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
allSlicesTouched() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume
allTimes - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ALLTREEA - Static variable in class gov.nih.mipav.view.JPanelTreeController
ALLTREEB - Static variable in class gov.nih.mipav.view.JPanelTreeController
AllTripletsWithinBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allVOIBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
allVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation for all volumes
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < offset to center of patch.
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < offset to center of patch.
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < all x-locations on step grid.
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < all x-locations on step grid.
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < all y-locations on step grid.
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
alnrel(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
aLog - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
aloneMenu - Variable in class gov.nih.mipav.view.ViewUserInterface: Stores all stand-alone menus that have been created by the user.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion: Original code from dispersionMap.m, multiscaleBlending.m, remapFun.m, robustNormalization.m, runsef.m, and sef.m located at https://github.com/chlsl/simulated-exposure-fusion-ipol was written by Charles Hessel and is being ported to Java with his permission.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
alpha - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
alpha - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The structure sensitive parameter
alpha - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
alpha - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
alpha - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alpha - Variable in class gov.nih.mipav.model.algorithms.ODE
alpha - Variable in class gov.nih.mipav.model.algorithms.ODEEP
alpha - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
alpha - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
alpha - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Bias learning rate.
alpha - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: alpha channel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Structure sensitive parameter
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Alpha smoothing factor.
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
ALPHA - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The alpha channel transfer function.
alpha_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
alpha_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
alpha_measure(int, double[], int, int, int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
alpha_sq_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
alpha_status - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha_status - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alphaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: arrays of 12 values used for Talairach conversions.
alphaBlend - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Indicates the amount of blending when two images are loaded in the image frame.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameBase: Indicates the amount of blending when two images are loaded in the image frame.
alphaBright - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaBright - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaDim - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Fucntion that attenuates image values.
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Alpha blend slider.
alphaSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
alphatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
alphaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Text field for getting alpha smoothing factor.
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
als_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ALS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
alsoAcpc - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
alsoOrig - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
altBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
altCommand - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument: Alternate commands for a given action
altCommand - Variable in enum gov.nih.mipav.view.Argument.StaticArgument: Alternate commands for a given action
AlternateLinearSolverAndPreconditionerForSchurTypeLinearSolver(CeresSolver.SolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
alternateRowCount - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
alternating_onmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ALTERNATING_ONMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
AlternatingTableCellRenderer - Class in gov.nih.mipav.view: Title: AlternatingTableCellRenderer
AlternatingTableCellRenderer() - Constructor for class gov.nih.mipav.view.AlternatingTableCellRenderer: Creates a new AlternatingTableCellRenderer object.
altPressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
altTimeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeDicomTag - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
altTimeTagField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTagLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
always_split_variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
AmAl() - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
aMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: The colors associated with the light, typically all white.
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: DOCUMENT ME!
AMBIENT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Define attenuation lighting colors.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Ambient, emissive, sepcualar, diffuse color is used for the attenuation lighting.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Attenuation lighting colors.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Radio button for different light type.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Radio button for different light type.
Ami - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Amj - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
amp - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
amp_max - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp_min - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
ampFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationIndex - Variable in class gov.nih.mipav.model.file.FileInfoZVI
amplitude - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
AN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Analysis(double[], double[], String, String, String, int, String, double, boolean, boolean, String, String, String, String) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
analysisGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
analyticContinuationUsed - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: If false, function used If true, analytic continuation of function used.
analyticJacobian - Variable in class gov.nih.mipav.model.algorithms.NESolve
analyze() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
Analyze(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
Analyze(CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
ANALYZE - gov.nih.mipav.model.algorithms.SIFT3D.im_format
ANALYZE - Static variable in class gov.nih.mipav.model.file.FileUtility: Analyze format (Mayo). extension: .img, .hdr
ANALYZE_AUX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_AXIS_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_CAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DATATYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DBNAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DESCRIPTION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_dst_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type analyze.
ANALYZE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_ORIGINATOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_src_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_VOX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyzeFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Radio button to indicate that an analyze img file should be written out.
AnalyzeTest(CAAMShape, CAAMShape, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Benchmarks the software warping method against the OpenGL.
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: funcType for anatType == true.
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: funcType for anatType == true.
anatomicalRef - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 84 - 3 bytes - Anatomical Reference.
anatomyParentnameString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anatType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anchor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
anchor(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the livewire contour.
anchor(Point) - Method in class gov.nih.mipav.view.Rubberband: Anchors the rubberband to this point.
anchor(Point) - Method in class gov.nih.mipav.view.RubberbandLivewire: Calls seed on this point to set up costGraph array; then anchors point.
anchorBSpline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the BSpline line contour.
anchorPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
anchorPolyline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the poly line contour.
AnchorPosition() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
anchorPt - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
anchorPt - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
and - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
AND - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
andButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
andTable - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
angioFlag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
angle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
angle - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc: < radius or scale
angle - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon
angle - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
angle(double[], boolean[], int[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
angle(float[], float[], float[]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the angle between two lines.
angle(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
angle(Point3, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
Angle(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ANGLE - gov.nih.mipav.model.file.FileInfoBase.UnitType
angle_rad_2d(double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
ANGLE7(double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AngleAxisNearZeroRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisRotatePoint(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisToQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisToRotationMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
angleIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
angleIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
ANGLES(int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
anglesRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
anglesRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
ANGSTROMS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement angstroms.
ANGSTROMS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement angstroms.
ANGSTROMS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - angstroms.
angulationCorrection(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
animate() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Invoke the animation frame.
Animate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateCheckerboard() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLatticeModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLattices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateStop - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateThread - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateTime - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animating - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animationFrame - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
animationThread - Variable in class gov.nih.mipav.view.LineMeter: monitor animation happens in its own thread.
aniSampleRate - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
anisotropyBrowseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
anisotropyBuffer - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy file data buffer *
anisotropyFilename - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy src image *
anisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy src image *
anisotropyLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
anisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy max *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy min *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anlerr(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
anls_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ANLS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
annimationSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
annotatePtsCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: number of annotate points along the specified path.
annotatePtsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: annotate path planning points list
annotateVideos() - Method in class gov.nih.mipav.model.algorithms.libdt
Annotation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ANNOTATION - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type ANNOTATION for adding text annotations to an image.
ANNOTATION - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in annotation VOI mode
annotationAnimationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.AnnotationListener: AnnotationListeners are updated whenever annotations change in the LatticeModel.
annotationChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationChanged(VOI, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationDiameters - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationGroupList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationLabelsDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
AnnotationListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
annotationListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationListPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationNextButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrevButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationSpheres - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
AnnotationSplineControlPts() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationsStraight - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML: DOCUMENT ME!
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOI - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationVOIsUpdate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
ANON_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
anonDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
anonymizationComplete(JDialogAnonymizeDirectory.AnonymizeDicomDirectories) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: A psuedo-event-handler.
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X
anonymize(boolean[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Removes requested identifying info.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: removes any and all personal information in the info that a doctor, patient, researcher may want to have deleted from the image, such as patient name or patient ID number--from this slice given by this fileInfoDicom.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Anonymize the image by altering the sensitive data of each slice to something generic.
anonymize(boolean[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: New version of anonymize that allows you to replace the original tag value with a blank string or zero depending on the data type.
anonymizeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
AnonymizeDicomDirectories(File[], File, String, int, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: sets up the anonymizer thread.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Find face, blur face, commit, or cancel based on which buttons in the dialog are pressed.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Executes the de-facing algorithm.
anonymizeImage(File, File, int[], int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: actually does the grunt-work of reading the designaated image-file, anonymizing it, and writing the file to the deisgnated destination directory.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizer - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Access to the running thread which is anonymising directories.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeTagIDs - Static variable in class gov.nih.mipav.model.file.FileInfoDicom: these are the DICOM tag ID numbers corresponding to the tags which are anonymized.
anonymousName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
aNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ANOTHER_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: Another midsagittal reference point.
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
anotherMidSagPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
anotherPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPtDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ansR - Variable in class gov.nih.mipav.model.algorithms.Statistics
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Final answer after registration.
ANTERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Anterior reference point.
anteriorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: markers used for +ACPC to +tlrc transformation.
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
ANTI_SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
antialiasing - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
antigradient2Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
antigradient2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
antigradient3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AntipodalCornerIndex(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
ANY_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary can move in or out.
Aopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
ap - Variable in class gov.nih.mipav.model.file.FileZVI
apCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
apCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aperture - Variable in class gov.nih.mipav.model.file.FileSVS
aperture - Variable in class gov.nih.mipav.model.file.FileTiff
apertureToFStop(double) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions: Converts an aperture value to its corresponding F-stop number.
apInvert - Variable in class gov.nih.mipav.model.file.FileNRRD: True for RAS and LAS, false for LPS.
APLUSBI - gov.nih.mipav.view.Preferences.ComplexDisplay: Displays complex images in a + bi format
apotomeAutoShutterUsed - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeAveragingCount - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamFilterHarmonics - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamGenericCameraName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamNormalize - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamPhaseAngles - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterStrength - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFullPhaseShift - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGratingPeriod - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeProcessingMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP0 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP0 JPEG segment identifier.
APP0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP0_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP1 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP1 JPEG segment identifier.
APP1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP12 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP12 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP14 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP14 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP14_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP15 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP15 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP2 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP2 JPEG segment identifier.
APP2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP3 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP3 JPEG segment identifier.
APP3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP4 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP4 JPEG segment identifier.
APP4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP5 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP5 JPEG segment identifier.
APP5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP6 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP6 JPEG segment identifier.
APP6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP7 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP7 JPEG segment identifier.
APP7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP8 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP8 JPEG segment identifier.
APP8 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP8 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP9 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP9 JPEG segment identifier.
APP9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APPA - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPA (App10) JPEG segment identifier.
APPB - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPB (App11) JPEG segment identifier.
appBody - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
APPC - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPC (App12) JPEG segment identifier.
appConeHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
appContext - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Application context PDU type.
APPD - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPD (App13) JPEG segment identifier.
AppData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
APPE - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPE (App14) JPEG segment identifier.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Append an element to the end of the storage array.
append(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Appends the text area with the message.
append(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Appends the text area with the message.
append(String, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Appends the text area with the message.
append(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Method to append text to an attached JTextArea (not DEBUG or DATA areas).
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: File handler output mode - append.
append_block(CopyMoveAttackDetection2.Block) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
appendAgePart(StringBuilder, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
AppendArrayToString(int, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
appendButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Button for appending selected rows to end of JTable
AppendCols(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendDefaultData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: appends a non editable row to the end of the primary table.
AppendDiagonal(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
AppendE(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendI(int, IDList, IDList, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
appendImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoXML: Appends a string to the image description.
appendInvestigatorData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the investigators table.
appendKey(String) - Method in class gov.nih.mipav.model.structures.CustomHashtable: Starts with a key that already exists in the hashtable and appends integers to its toString().
appendLengthTag(FileDicomTag, HashMap<Integer, FileInfoDicom.LengthStorageUnit>) - Method in class gov.nih.mipav.model.file.FileInfoDicom
appendMessage(String) - Method in class gov.nih.mipav.view.JPanelProgressBar: DOCUMENT ME!
appendMessage(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
appendMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBar: Concatenates a message to the message area of the progress bar.
AppendN(LODMesh.Triangle, LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendParameter(String, String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row with the given parameter data to the proper set display table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a non editable row to the end of the primary table.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
AppendRows(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
AppendRows(CeresSolver.CompressedRowSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
AppendRows(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendScanData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the scan information table.
appendSecondaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the Secondary Info table.
appendSecondaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendSendMessage(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Appends the text area with the message.
appendSubjectData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the subject information table.
AppendT(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendTagData(String, String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the tag table.
appendToFile(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
appendUserDefinedData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
AppendV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendVF(int, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
APPF - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPF (App15) JPEG segment identifier.
appHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
AppleMakernoteDescriptor(MetadataExtractor.AppleMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
AppleMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
AppleRunTimeMakernoteDescriptor(MetadataExtractor.AppleRunTimeMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
AppleRunTimeMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
AppleRunTimeReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader
AppletFrame - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
AppletFrame(String, Applet, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.AppletFrame
applicationName - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
appliedCorrections - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
apply_Affine_xyz(SIFT3D.Affine, double, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
apply_Sep_FIR_filter(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
applyACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
applyBackpropagation(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Apply button is used to apply the setting of the dialog.
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies bounding box/shading/name display and other UI changes to ModelImage
applyButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Apply button is used to apply the setting of the dialog.
applyClipFilter(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
applyClosePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The panels that make up this Dialog
applyColorChange() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Update the color changes to the Before sphere and the original surface.
applyColorChange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Update the color changes to the Before sphere and the original surface.
applyComponentOrientation(ComponentOrientation) - Method in class gov.nih.mipav.view.JScrollMenu
applyDefField(ModelImage, ModelImage, int, Matrix, ModelImage, int[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Creates a deformation field from the input matrix and deformation field and applies it to the input image.
applyDeformationField(int, TransMatrix, TransMatrix[], ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Applies the input B0 to T2 matrix, list of within-volume matrices and input deformation field to the 4D volume series.
ApplyForAcceptance(CAAMInitializeStegmann.CAAMInitEntry) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: Apply for acceptance of a new initialization hypothesis.
applyGenericName() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: converts the name and sequence JTextFields into native types.
applyK(double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKColor(double[][][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Apply small kernel to smooth out data.
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Apply small Gaussian kernel to smooth out data.
ApplyOrdering(HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
applyppftfilter(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
applyRotation(double[][], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: applySculpt: abstract function, implementation depends on whether the instance is VolumeTextureSculptor or VolumeSculptor.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Apply the sculpt region to the volume.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Apply the sculpt region to the volume.
applySculpt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Apply the sculpt region to the volume data.
applySculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Cull the sculpt region through the 3D volume.
applySculptRegion(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Cull the sculpt region through the 3D volume.
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: DOCUMENT ME!
applyToBlueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable blue threshold.
applyToGreenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable green threshold.
applyToRedBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable red threshold.
applyWindowLevel - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Flag to indicate to apply window level or not.
applyWorldToModelTransform(Matrix3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
applyWorldToModelTransform(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
APPN_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
approveSelection() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
ApproxExample(String, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Doing model approximation of an (unseen) example.
approximate_eigenvalue_scale_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe appearance.
Aprod(int, int, int, int[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Aprod(int, int, int, int[], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
aprod_ez(LSQR.lsqr_solver_ez, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR
aprod1(LSQR.lsqr_solver_ez, int, int, int, int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: set to give 2 digits to the right of the decimal.
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: set to give 2 digits to the right of the decimal.
apser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
APSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
aradd(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays of numbers, a and b, and returns the sum of the array c.
arbiMouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Mouse Rotate behavior of the arbitrary clipping plane.
arbiTG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Tranform group for arbitrary clipping plane.
arbiTrans3d - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
arbitrary_SG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane switch group.
ArbitratyEquation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
ArbRotate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Scene-graph node for rotating the arbitrary clipping plane.
ARCH_ALPHA - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an alpha system architecture.
ARCH_AMD64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an amd64 system architecture.
ARCH_ARM - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an arm system architecture.
ARCH_IA64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an ia64 (itanium) system architecture.
ARCH_MIPS - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a mips system architecture.
ARCH_PA_RISC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a PA RISC system architecture.
ARCH_PPC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 32-bit power pc system architecture.
ARCH_PPC64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 64-bit power pc system architecture.
ARCH_SPARC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a sparc system architecture.
ARCH_UNKNOWN - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an unknown system architecture.
ARCH_X86 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an x86 system architecture.
architecture - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
ArcTan2(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ArctanLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
ARCTY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
area() - Method in class gov.nih.mipav.model.structures.VOI: Finds the area of the entire VOI of the VOIContour type only.
area() - Method in class gov.nih.mipav.model.structures.VOIBase
area() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Calculate the surface mesh area.
area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Shape area computation
area(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns the total area of all triangles in the mesh.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns the area.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
Area(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the total area of the shape (with holes excluded).
area_measure(int, double[], int, int, int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
areaDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
areaLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The area label.
areaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The area label.
areaText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Displays the area of triangle.
areaText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Displays the area of triangle.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Determines which side of the line a point lies on, used for determining if a point is inside or outside a closed loop.
areMultipleAllowed() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
areSiblingsSelected(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
ARGB - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
argb_bounded(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_bounded(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB_FLOAT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - floats).
argb_fromNormalized(double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
argb_fromNormalized(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
ARGB_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned bytes).
ARGB_UINTEGER - gov.nih.mipav.model.structures.ModelStorageBase.DataType
ARGB_UINTEGER - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
ARGB_UINTEGER_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
ARGB_USHORT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned shorts).
ARGIN1(double, double, int, double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ARGUM(double, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
Argument - Interface in gov.nih.mipav.view
Argument.InstanceArgument - Enum in gov.nih.mipav.view
Argument.StaticArgument - Enum in gov.nih.mipav.view
arial13 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13 - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, plain, arial font.
arial13B - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13B - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, bold, arial font.
arith_ac_K - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_code - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_L - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_U - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_decode(libjpeg.jpeg_decompress_struct, int[]) - Method in class gov.nih.mipav.model.file.libjpeg
arith_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
ARMIJO - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType
ArmijoLineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArmijoLineSearch
armult(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts array a and scalar b, and returns the product array c.
arrangeCTZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CTZ order.
arrangeCZT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CZT order.
arrangeTCZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TCZ order.
arrangeTZC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TZC order.
arrangeZCT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZCT order.
arrangeZTC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZTC order.
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
array - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t
ARRAY - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
array1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
array1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
array2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
arrayCopy(double[], int, float[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a double array to a float array.
arrayCopy(float[], int, double[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a float array to a double array
ArrayIndexingOrderValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
ArrayInfo() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo
arrayLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ArrayListTransferable(ArrayList<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: Creates a new ArrayListTransferable object.
ArrayListTransferHandler() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: Creates a new ArrayListTransferHandler object.
arrayLocationArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
arrayName - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
arrayPos - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
arraySizeArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
ArraySorter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
ArraySorter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
ArrayUtil - Class in gov.nih.mipav.util: A class containing Array-related helper methods.
ArrayUtil() - Constructor for class gov.nih.mipav.util.ArrayUtil
ArrayUtilsFindInvalidIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ArrayUtilsIsArrayValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Arrow(boolean, int, int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Arrow: Creates a new Arrow object.
Arrows - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileGESigna4X
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
arsub(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays and subtracts each element in the second array b from the element in the first array a and returns the solution c
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates a voxel that is part of the arterial vasculature tree.
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates a voxel that is part of the arterial vasculature tree.
artist - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
artist - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
Arw - gov.nih.mipav.model.file.MetadataExtractor.FileType: Sony camera raw.
arydiv(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the complex number resulting from the division of four arrays, representing two complex numbers.
AS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
asag_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ASAG_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ASCENDING - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
ASCII - gov.nih.mipav.model.file.FileSVS.Type: 7 bit ASCII
ASCII - gov.nih.mipav.model.file.FileTiff.Type: 7 bit ASCII
ASCII - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
ASCII - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets
asciiFormat - Variable in class gov.nih.mipav.model.file.FileMetaImage
asciiText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
asciiTextArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
asComponent() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
asComponent() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Implicit cast of this canvas to a class extending Component.
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
Asf - gov.nih.mipav.model.file.MetadataExtractor.FileType
ASF2PTS(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Converts AAM-API shape files (.asf) to the ISBE .pts format.
asin() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1 < x < 1, arcsin(x) = x + x**3/(2*3) + (1 * 3 * x**5)/(2 * 4 * 5) + (1 * 3 * 5 * x**7)/(2 * 4 * 6 * 7) + ...
asinh(double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
aSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Which arbitray clipping slice is currently displayed.
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asm - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASM_2D_example() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data_inverse2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_ApplyModel2D(ModelImage, AlgorithmASM.TData, AlgorithmASM.SData, AlgorithmASM.AppData[], AlgorithmASM.Options) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_GetContourNormals2D(double[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_getProfileAndDerivatives2D(ModelImage, double[][], double[][], int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeAppearanceModel2D(AlgorithmASM.ASMData[], AlgorithmASM.Options, AlgorithmASM.AppData[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeShapeModel2D(AlgorithmASM.ASMData[], AlgorithmASM.SData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
asmCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asmCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASMData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
ASONJ7(double, double, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
asOpenGL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: hardware OpenGL synthesize, currently disabled.
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
AspectRatio() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
ASPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ASQUC7(double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
assemble_system_dirichlet(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assemble_system_mixed(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assert_almost_equal(double[][], double[][], int, String, String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
AssertLossFunctionIsValid(CeresSolver.LossFunction, double, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
assess(double[], int[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
assign(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator
assign(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Assign operator.
assign(CAAMMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Assignment operator.
assign(CAAMModel) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Assignment operator.
assign(CAAMOptState) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Assignment operator
assign(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Assignment operator
assign(CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Assignment operator.
assign(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Assignment operator.
assign(CAAMReferenceFrame.sScanLinePart) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart
assign(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CAAMShapeCollection) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Assignment operator
assign(CAAMTriangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Assignment operator
assign(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CDMatrix).
assign(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CVisDMatrix).
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
assign(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(POINT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
assign(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(SIZE) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE
assign(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
assign(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
assign(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
assign(JDialogProstateSegmentationRegBSpline3D.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
assign(JDialogProstateSegmentationRegBSpline3DFast.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
assign_eig_ori(SIFT3D.Image, SIFT3D.Cvec, double, SIFT3D.Mat_rm, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientation_thresh(SIFT3D.Image, SIFT3D.Cvec, double, double, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientations(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assignCalendar(Calendar, Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Assign source Calendar to target calendar.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assignTextons(int[][], double[][][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
associateAC - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate accept object.
associateRJ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate reject object.
associateRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate request object.
asSoftware - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: software synthesize
asString() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns a String representation of this pixel at its current position.
assume_full_rank_ete_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
assumed_blur - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
assumed_blur - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
assumed_blurText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
ASYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
asymmetryIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
asymmetryIndexDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
aSyncSubItem - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
AT - gov.nih.mipav.model.file.FileDicomTagInfo.VR
at_plus_a(int, int, int[], int[], int[], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
AtA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
atan() - Method in class gov.nih.mipav.util.DoubleDouble: For -1 < x < 1, arctan(x) = x - x**3/3 + x**5/5 - x**7/7 + ...
atan2(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: The atan of this(the imaginary y component) divided by the real component x Value will range from -PI to PI.
AtAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
AtF - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
AtFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
ATLAS_AC_TO_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - anterior.
ATLAS_AC_TO_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - inferior.
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - lateral.
ATLAS_AC_TO_PC - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: AC to PC dimension.
ATLAS_AC_TO_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - superior.
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_BBOX_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - anterior.
ATLAS_BBOX_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior.
ATLAS_BBOX_INF_NEW - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .
ATLAS_BBOX_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - lateral.
ATLAS_BBOX_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - posterior.
ATLAS_BBOX_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - superior.
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_COLLECTION - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - posterior.
atlasBasedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: atlas image:
atlasImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
atLastPos - Variable in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
atol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
attach(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Attaches this DICOMSocket to a JAVA socket.
attachChildTagTables(FileDicomTagTable[]) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Sets the list of tag tables which point to this as their reference tag table.
attachedImages - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text are for displaying the attached images
attachFileInfo(FileInfoMGH, ModelImage) - Method in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
attachmentName - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Name of the image being attached.
attachSurface(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Attach the generated surface to an image.
ATTDelaunay(double[], double[], int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
attemptLoadFromPackage(String, String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Trys to load a action's class, searching in a specific package.
attenuation - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
attenuationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The attenuation algorithm.
attenuationBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The attenuated VOI mask buffer.
attenuationCorrection - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
ATTR_DIM_ALIGNMENT - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_DIRECTION_COSINES - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_LENGTH - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_SPACETYPE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_START - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_STEP - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_UNITS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_DIM_ORDER - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_VALID_RANGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_STUDY_MODALITY - Static variable in class gov.nih.mipav.model.file.FileMincHDF
attribStr - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: attribute string (for image attributes).
atv(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
ATVMFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
Aty - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
AUC - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
AUC_IGNORE_TIES - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
author - Variable in class gov.nih.mipav.model.file.FileInfoCZI
author - Variable in class gov.nih.mipav.model.file.FileInfoFits
AUTO_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The mode where paint grow seed points are automatically determined and chosen by the user.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Calculate the rotation matrix when the auto camera caputuring the images.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp: Override the parent autoCapture method to capture MIP image volume.
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
autoCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoContrast - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
AutoCorrelation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the autocorrelation of the vector with a given lag (default lag is 1).
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
autofillButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
autofillRequiredFields() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Autofill the dicom required tags to loosely fullfill the dicom standard.
autoLabel - Variable in class gov.nih.mipav.model.structures.VOIBase: Automatically generate the label, unless it is set explicitly:
autoLatticeGenerationOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
automatic - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
automatic - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
AUTOMATIC_ERROR_REPORTING - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
automaticCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
autoRun() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface: Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
autoRunButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Auto Run Button.
autosaveMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
autoSequence - Variable in class gov.nih.mipav.model.file.FileNRRD: True if data file: [] encountered If true, autosequence using integer format specification varied according to , , and .
autoShrinkDomain - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkDomainCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkRange - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoShrinkRangeCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoStartCBREngine - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: If true determines the threshold by histogram analysis.
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoXmtFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 282 Auto Center Frequency (0.1 Hz).
autoXmtGain - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 286 Auto Transmit Gain (0.1 dB).
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: auxiliary file
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
Aux1Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
Aux2Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
Aux3Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
auxdata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
auxTechnique - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
av(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av2(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av3(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av4(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av5(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av6(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns an estimate of the number of bytes that can be read (or skipped over) from this MetadataExtractor.SequentialReader without blocking by the next invocation of a method for this input stream.
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
availableBits() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
availableBits() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
availableImageList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: available images to concat...the ones that are open in mipav
aVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
Aval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions: < Regularization method for S.
aveH - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
average - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Radio button selected if inserted slices are a weighted average of surrounding slices.
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
AVERAGE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: average
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Average deconvolution is based on the arithmetical mean of the two estimates from A and B separately
AVERAGE_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
AVERAGE_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Average volume type - the inserted volume is set equal to the mean of the 2 surrounding volumes.
averageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averagedImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
averageDistanceMaps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: distance maps
averageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
averageImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
averagePt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the average of the contour of a VOI.
averageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageSAR - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averageSAR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
averagesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averagesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
AverageVariance(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
averagingNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: DOCUMENT ME!
averagingNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
AVGERAGE_WITH_STDEV - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
avgInten - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgInten - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
avgIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
avgIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgJ0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
avgPix(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgPix(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgVolIndex - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: Philips puts in one volume as the average of all the DWIs.
Avi - gov.nih.mipav.model.file.MetadataExtractor.FileType
AVI - Static variable in class gov.nih.mipav.model.file.FileUtility: AVI file type.
AVI - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Filter avi files (*.avi).
AVI_COMPRESSION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for the avi compression parameter.
AVI_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI is recording.
AVICompression - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
AVIF_HASINDEX - Variable in class gov.nih.mipav.model.file.FileAvi
AVIF_ISINTERLEAVED - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
AVIF_MUSTUSEINDEX - Variable in class gov.nih.mipav.model.file.FileAvi: globals needed for read - set in readHeader, used in readImage.
aviField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
aviPlayButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Play button.
aviRecordButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder record button.
aviStopButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Stop button.
avsimp(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
avsvd(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Awt wake up condition .
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Awt wake up condition .
AWTImageSourceStream(int, int, int, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: Creates a new AWTImageSourceStream object.
Ax - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
axes - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
axes - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
axesRatio - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
axesRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioText - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis oritentation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis orietation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
AXIAL - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
AXIAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axial orientation.
AXIAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: along the major axis (+).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: (3D only).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: (3D only).
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicates that image orientation is unknown type or not.
AxialVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Axial VOI instance
axioCamAnalogGainEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamBlackReference - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamColorModel - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamEnhanceColor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamMicroScanning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamNIRMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamResolution - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSaturation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSelector - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterControl - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterSignal - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AXION - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AXION1(int[], int[], double[], int, int, int[], int[], int[], double[], double, boolean[], double[], int[], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
axis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: DOCUMENT ME!
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
AXIS_DEC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: DOCUMENT ME!
AXIS_INC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render selected planes in order of increasing/decreasing coordinate.
AXIS_ORIENTATIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: The label to use for the parameter indicating the new axis orientations
AXIS_UNDEFINED - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Used to represent undefined AXIS_*.
AXIS_X - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume YZ planes in order of increasing/decreasing X.
AXIS_Y - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume ZX planes in order of increasing/decreasing Y.
AXIS_Z - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume XY planes in order of increasing/decreasing Z.
axisAligned() - Method in class gov.nih.mipav.view.PatientSlice: Determines if a slice is axis-aligned, based on the m_kFourCorners[] four corners of the slice in 3D Model space.
axisAngle - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisAngle - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
axisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
axisDirA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisDirB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisFlip - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisFlip - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisLabels - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Labels for the axes:.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis panel.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: axis region.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
axisMaxs - Variable in class gov.nih.mipav.model.file.FileNRRD: Maximum axis value.
axisMins - Variable in class gov.nih.mipav.model.file.FileNRRD: Minimum axis value.
axisOrder - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisOrient - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileInfoBase: axis orientation used to support image ordering and display for medical images.
axisOrientation - Static variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The axis orientation static types
axisOrientation - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNIFTI: R2L, L2R, A2P, P2A, I2S, and S2I orientations of x, y, and z axes.
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNRRD: For each axis R2L, L2R, A2P, P2A, I2S, or S2I
axisOrientation - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.view.ViewJComponentTriImage
AxisOrientation(int, String) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
axisOrientation2 - Variable in class gov.nih.mipav.model.file.FileNIFTI: When both qform_code > 0 and sform_code > 0, the axis orientation information corresponding to sform_code > 0 is placed in axisOrientation2
axisOrientationStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Array of axis orientation strings.
axisPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
axisX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisX - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisY - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisZ - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
az - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
AZETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azetac - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azimuth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
azimuthArray - Variable in class gov.nih.mipav.model.file.FileNIFTI

B

b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
b - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
b - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
b - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
b - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
b - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
b - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.Gamma
b - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input parameter
b - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
b - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
b - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
b - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
b - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
b() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
B - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
B() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
B_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
b_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the blue value of this pixel at its current position.
b_counts_int - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b_disp - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
b_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
b_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
B_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
B_Y_OFF - Variable in class gov.nih.mipav.model.file.libjpeg
b0CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B0extraction(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Extracts the reference sub-volume from the input 4D image.
B0MatrixFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
b0MatrixFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: File name for the B0 to T2 transformation matrix (needed to populate the next panel in the DTIPipeline)
b0ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b0ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: The transformation matrix describing the transformation from registering B0 to T2 image.
B0toStructTransPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
b1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b1 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b1 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
b1 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
B1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
b1CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
B1Combo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
b1Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
b1ImageIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
b1ImageName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b1ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b2 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b2CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B2d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b3 - Variable in class gov.nih.mipav.model.file.FileDicom
b3 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b3CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B3d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b4 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b4CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b5 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b5CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b6 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b6CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b7 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b8 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
back(IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
back(LODMesh.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Triangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
BACK - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
back_transform(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
backBottomLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
BackfaceCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
background - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
background - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The background node for the canvas.
background - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
Background(double[][], double) - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
BACKGROUND - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
background1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: The minimum values that are considered as data values.
background1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
background2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
background2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
backgroundB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundColor - Variable in class gov.nih.mipav.model.structures.VOIText: The color used to draw behind the main text (so that the text will stand out)
backgroundColor - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The default background color of JPanels (look and feel dependent).
backgroundColor - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
backgroundColor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The default background color of JPanels (look and feel dependent).
BackgroundColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
backgroundColorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: button to bring up the background color chooser.
backgroundDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Euclidian distance map of the background.
backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Generates a Euclidian distance map of the background.
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: The index of a rerquired noise background VOI.
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
backgroundIndex2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
backgroundLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundPresent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
backgroundsDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
backgroundVariance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: DOCUMENT ME!
backing_store_info() - Constructor for class gov.nih.mipav.model.file.libjpeg.backing_store_info
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
BackProject(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Back projects a set of PCA model parameters into the original space.
Backpropagation - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2016 Jason Wu Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
Backpropagation() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation
Backpropagation.Connection - Class in gov.nih.mipav.model.algorithms
Backpropagation.MainFrame - Class in gov.nih.mipav.model.algorithms
Backpropagation.MainFrame.GPanel - Class in gov.nih.mipav.model.algorithms
Backpropagation.NeuralNetwork - Class in gov.nih.mipav.model.algorithms
Backpropagation.Neuron - Class in gov.nih.mipav.model.algorithms
backSpaceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
BackSubstitute(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase
backTopLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backupColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Stores the per-vertex colors when the material is set -- used to restore per-vertex color from the AdvancedMaterials dialog.
backupData(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup ModelImage data.
backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Called by the TextureSculptor or VolumeSculptor objects.
backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
backupImage(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
backupMosaic() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: backupMosaic -- Backs up the reference & tile polygon shapes, borders, ModelImages, and TransformGroups before the registration is called, so that registration can be undone by the user:
backupPaintBitmap() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Backs up the paintBitmap into the paintBitmapBU variable.
backupSculptImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup the sculpt image.
backupSecondGaussianRoutine() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
backupZDim - Variable in class gov.nih.mipav.model.file.FileZVI
BACKWARD - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
bad_block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileSVS
BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileTiff
BAD_TEST_TERM_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
bad_variable - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
badBGLengths() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
badBlockHeader() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
badc1_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
badc1_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
badc2_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
badc2_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
badFaxLines - Variable in class gov.nih.mipav.model.file.FileSVS
badFaxLines - Variable in class gov.nih.mipav.model.file.FileTiff
BadJacobianCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadJacobianCostFunction
BadLocalParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
BadResidualCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadResidualCostFunction
BadTestTerm(int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
bAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK: DOCUMENT ME!
BallPivoting - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
BallPivoting(TriMesh, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
BallPivotingPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
BallPivotingPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
BAND_DQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
BAND_USER - Variable in class gov.nih.mipav.model.algorithms.CVODES
bandButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
bandno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
bands - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
BANDS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the number of bands used in the AAM model. 1 for single intensity channel of MRI prostate grayscale image. 3 for the RGB channels.
bandSpacing - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
bandSpacingCounter - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
bandtypeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
bandwidth(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
bandwidth_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
bar - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: JMenuBar for loading/saving defaults
BARD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BARD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
BardFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BardFunction
baricenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
BarMeter - Class in gov.nih.mipav.view: BarMeter presents a vertical, block-style meter to present numerical information as a fraction of a number of divisions (eg, progress or resource consumption).
BarMeter() - Constructor for class gov.nih.mipav.view.BarMeter: Constructs a barmeter with a background color of black.
barPanel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: Panel containing all the progress bars as well as relevent text labels
bary_eps - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
BarycentricGradientPaint(double, double, double, double, double, double, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(float[], float[], Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(float, float, float, float, float, float, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(Point2D, Point2D, Point2D, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaintContext(Point2D.Float, Point2D.Float, Point2D.Float, Color, Color, Color, AffineTransform, boolean) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
base - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
base - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
base - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
base_dither_matrix - Variable in class gov.nih.mipav.model.file.libjpeg
baseAfterNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: In autosequencing number between a capital D and the last period used in generating filenames.
baseBeforeNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: In autosequencing number before percentage sign and period used in generating start of autosequenced filename.
baseBlockSize - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
baseBuffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
baseFunction - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
baseFunctions - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Image for Y-axis of Histogram
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Base image - register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Base image - register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
baseKernels - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
baseName - Variable in class gov.nih.mipav.model.file.FileMetaImage
baseNameforReconstructedSlices - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
baseNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: Used if autosequencing.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Limits the number of iterations of Powell's algorithm when registering the original image against the flipped image.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Advanced optimization settings maxIter in the call to ELSUNC will be an integer multiple of baseNumIter.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Advanced optimization settings maxIter in the call to Powell's will be an integer multiple of baseNumIter.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Limits number of iterations in ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL optimization.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: these numbers hard coded for constructors that don't include them.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Limits number of iterations in elsunc optimization. maxIter in the call to elsunc will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: these numbers hard coded for constructors that don't include them.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < index of the first octave.
baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Index of the last octave subdivision
baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The sum of the gradient magnitude along the polygon.
baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
BaseWavelet() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
BasicGrid - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting: BasicGrid Basic Class abstracting a gridded structure in a 3d space; Usueful for having coherent float to integer conversion in a unique place: Some Notes: - bbox is the real occupation of the box in the space; - siz is the number of cells for each side OBJTYPE: Type of the indexed objects.
BasicGrid() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
basicParametersSurface - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicSize - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
basym(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
batch_size - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
batchDistance(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, int, Vector<Double>, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
BatchDistInvoker(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
batchSize - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bb_bounds() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
bbox() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox
bButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
bc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
BCb - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
BCb - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
BCFSN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCFSNG(int, int[], int[], int[], double[], double[], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCFVTF(double[], double[], int[], int[], int[], int[], int, int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: If true filter the blue channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: the blue channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: when true, indicates whether to process the colour channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: the blue channel.
bcm - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BCOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.bColorListener
bcorr(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bd(Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, double[], double, double, double, double[], double, double[], int, int, int, int, boolean, int, double, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
BD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: DOCUMENT ME!
bdbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
BDF_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
bdl - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of slices.
bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of slices.
bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of rows.
bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of rows.
bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of columns.
bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of columns.
bdtr(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdtrc(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdtri(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
be_shrunk(int, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
be_shrunk(int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
be_shrunk(int, int, int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
BEALE - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BEALE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BealeFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BealeFunction
BEAMSPLITTER_ENTRY_FILTER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BEAMSPLITTER_ENTRY_FILTER_SET - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BEAMSPLITTER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
beautifyTime(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
BEByteArrayInputStream - Class in gov.nih.mipav.model.file.rawjp2: Big Endian Input Array Stream, works as a replacement for BERandomAccessFile at the input of Jpeg2K decoder.
BEByteArrayInputStream(byte[]) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
BEByteArrayInputStream(byte[], int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
BEByteArrayOutputStream - Class in gov.nih.mipav.model.file.rawjp2: Big Endian Output Array Stream, works as a replacement for FileFormatWriter at the output of Jpeg2K encoder.
BEByteArrayOutputStream() - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
BEByteArrayOutputStream(ByteArrayOutputStream, int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
BED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
beenVisited(int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
beep() - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Sound a beep.
beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Sound a beep.
beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Sound a beep.
BEFORE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Before/After index values for the two displayed spheres, canvases, and display panels:.
BEFORE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Before/After index values for the two displayed spheres, canvases, and display panels:.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Make the dimension be the power of two, and zero pad them.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Make the dimension be the power of two, and zero pad them.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: This is a callback to be executed before resampleAll is executed.
beforeResampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: This is a callback to be executed before resampleSingle is executed.
beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
begin - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
begin_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The region is grown from the input seeds.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The region-growing fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: An annulus is computed about the boundary of the coarse-level segmentation.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The signed-distance-transform fast march.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Evolve the signed-distance transform in the annulus constructed previously.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The level-set evolution.
beginSlice - Variable in class gov.nih.mipav.model.file.FileWriteOptions: 3D options.
beginTimePeriod - Variable in class gov.nih.mipav.model.file.FileWriteOptions: 4D options.
behaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The BranchGroup to which the arbitrary behaviors are attached and rotate.
behaviorfix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
BEHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
BELOW - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
belowThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
bendingMatrix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
Bennett5CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Bennett5CostFunction
Bennett5Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Bennett5Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
bernard(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BernoulliA(int) - Method in class gov.nih.mipav.util.DoubleDouble
BernoulliB(int) - Method in class gov.nih.mipav.util.DoubleDouble
Bessel - Class in gov.nih.mipav.model.algorithms: This module computes Bessel functions of complex arguments and a nonnegative order.
Bessel(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: Creates a new Bessel object.
Bessel(int, double, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This construtor used for I, J, K, and Y Bessel functions.
Bessel(int, double, double, double, int, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This constructor used for H functions of kind 1 and 2.
Bessel(int, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This constructor is used for Ai and Bi Airy functions.
BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel functions of the third kind, Hankel functions.
BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel functions of the third kind, Hankel functions.
BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.Bessel: modified Bessel function of the first kind.
BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: modified Bessel function of the first kind.
BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel function of the first kind.
BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel function of the first kind.
BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.Bessel: modified Bessel function of the second kind.
BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: modified Bessel function of the second kind.
BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel function of the second kind.
BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel function of the second kind.
BesselEP - Class in gov.nih.mipav.model.algorithms: This module computes Bessel functions of complex arguments and a nonnegative order.
BesselEP(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: Creates a new BesselEP object.
BesselEP(int, double, double, double, int, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor used for H functions of kind 1 and 2.
BesselEP(int, double, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor used for I, J, K, and Y Bessel functions.
BesselEP(int, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor is used for Ai and Bi Airy functions.
BesselType - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
BesselType - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
bessInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
best_csnrs(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
bestDim(int, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
bestImageIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
bestMap(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
bestMax - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
bestMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bestSliceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
bestToWorst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
bestToWorst - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
bestWeight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
beta - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Total number of entries (= # active nodes)
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
beta - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
beta - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Beta parameter
beta - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
beta - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
beta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
beta - Variable in class gov.nih.mipav.model.algorithms.ODE
beta - Variable in class gov.nih.mipav.model.algorithms.ODEEP
beta - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
beta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
beta - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
beta - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
beta(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BETA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
BETA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
BETA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
beta_c4 - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_f_range - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_hrbu - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
beta_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_init(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BETA_MAX - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
beta_np_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_p_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_range_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
betaH - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betaHalflife - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
BETail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
betaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
betaln(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
BetaRand(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
betatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
betaW - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BETWEEN - gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType: Pixels between boundA and boundB (inclusive) will be excluded from a calculation.
bf_flyPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Panel to hold the BrainSurfaceFlattener or Flythrough views.
BFGS - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
BFGS(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
BFGSUnFac(CDVector, CDVector, CDVector, CDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Algorithm A9.4.1 p. 355 Input: x, xplus, gc, gplus Input-Output: H Description: The BFGS update is made unless either: i) y'*s < (macheps)^0.5*||y|| or ii) for every i, |(y-Hs)[i]| is less than the estimated noise in y[i].
BFLOAT - Static variable in class gov.nih.mipav.model.file.FileUtility: Extension: .hdr for header, .bfloat for data
bfrac(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
BFSNC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
BG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
bgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
BgEdge() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
BgEdgeDetect(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
BgEdgeList() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
BgImage(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
BgImage(short[], int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
bgISort(int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
Bgr192ComplexFloat - Static variable in class gov.nih.mipav.model.file.FileCZI: A triple of 2 x 4 byte IEE float, representing real and imaginary part of a complex number, for the color channels blue, green, and red
Bgr24 - Static variable in class gov.nih.mipav.model.file.FileCZI: 8 bit triples, representing the color channels blue, green, and red
Bgr48 - Static variable in class gov.nih.mipav.model.file.FileCZI: 16 bit triples, representing the color channels blue, green, and red
Bgr96Float - Static variable in class gov.nih.mipav.model.file.FileCZI: Triple of 4 byte IEEE float, representing the color channels blue, green, and red
Bgra32 - Static variable in class gov.nih.mipav.model.file.FileCZI: 8 bit triples followed by an alpha (transparency) channel
bgrat(double, double, double, double, double[], double, int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bgSort(long[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
BGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
BGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgVector - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: Vector to hold all toggle groups for VOI toggle (and custom toggle configurations)
BH - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
BI_ALPHABITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 6 = RGBA bit fields
BI_BITFIELDS - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_BITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 3 = Bit fields (not OS22XBITMAPHEADER (size 64))
BI_CMYK - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 11 = CMYK
BI_CMYKRLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 13 = CMYK RLE-4
BI_CMYKRLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 12 = CMYK RLE-8
BI_HUFFMAN_1D - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 3 = Huffman 1D (if OS22XBITMAPHEADER (size 64))
BI_JPEG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 4 = JPEG (not OS22XBITMAPHEADER (size 64))
BI_PNG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 5 = PNG
BI_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RGB - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 0 = None
BI_RLE24 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 4 = RLE 24-bit/pixel (if OS22XBITMAPHEADER (size 64))
BI_RLE4 - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 2 = RLE 4-bit/pixel
BI_RLE8 - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 1 = RLE 8-bit/pixel
bi_sigma_range0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bi_sigma_spatial0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bi_size - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bias - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Model ($\bw$ vector).
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem: If bias >= 0, we assume that one additional feature is added to the end of each data instance
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
BIAS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
BIAS2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
BIAS3 - Variable in class gov.nih.mipav.model.algorithms.CVODES
biasFieldFullWidthAtHalfMaximum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
biasLearningRate - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest
biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Bias.
BICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BICUBIC - gov.nih.mipav.view.Preferences.InterpolateDisplay: Bicubic interpolation
bicubic_interpolation_at(double[], double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Compute the bicubic interpolation of a point in an image.
bicubic_interpolation_cell(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Bicubic interpolation in two dimensions
bicubic_interpolation_warp(double[], double[], double[], double[], int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Compute the bicubic interpolation of an image.
BiCubicInterpolator(CeresSolver2.Grid2D) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
BiCubicInterpolatorTestDegree00Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree01Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree10Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree11Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree12Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree21Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree22Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestZeroFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
bidx - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Minimum distance to an entry
big - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
big - Static variable in class gov.nih.mipav.model.algorithms.Cephes
big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BIG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Flag used to indicate Big Endianess.
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileBase: Byte order.
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileDicomBase: Byte order.
big_parchk - Variable in class gov.nih.mipav.model.algorithms.NL2sol
BIGd - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Radio button to denote image is big endian.
bigEndian - Variable in class gov.nih.mipav.model.file.FileBase: DOCUMENT ME!
bigEndian - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data
bigEndian - Variable in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
bigEndian - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BIGGS_EXP6Function() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BIGGS_EXP6Function
biginv - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bilaplace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
bilateralFilter(double[][], int, int, double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
bilateralFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: DOCUMENT ME!
BilateralGradientFilter(double[][], double[][], double[][], double, double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BilateralGradientFilterLUT(double[][], double[][], double[][], double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
bilinear - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Radio buttons for interpolation methods.
BILINEAR - gov.nih.mipav.view.Preferences.InterpolateDisplay: Bilinear interpolation
BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Biilinear interpolation.
BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Biilinear interpolation.
BILINEAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Action command for bilinear interpolation.
bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Update the LUT in real-time:
bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update the LUT in real-time:
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Number of bins for Image1
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Number of bins for first image.
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Bin to use for pixel comparisons
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Number of bins for each image
bin1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bin1Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Default number of bins for first image.
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Label description for bin1.
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Textfield for bin1.
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: User input of bins
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Number of bins for Image2
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Number of bins for second image.
bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bin2Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Default number of bins for first image.
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Label description for bin1.
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Textfield for bin2.
BINARY_TYPE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: DOCUMENT ME!
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
BinaryCostFunction(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction
BinaryCostFunction2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction2
BinaryCostFunction3(int, int, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
BinaryCostFunction4(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction4
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
BinaryNode - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
BinaryNode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
bincount(int[], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
binExt - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data: Elements.
binExternal - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF: must have either: Bin:External or Bin:BinData.
BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal: Creates a new BinExternal object.
BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal: Creates a new BinExternal object.
binning - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
BinoRand(double, long) - Method in class gov.nih.mipav.model.algorithms.Fastfit
bins - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Hist
bins - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
binSample(double[][], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
binsField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
binsField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
binText - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
binWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Histogram bin width.
BIOMAGNETIC_IMAGING - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality biomagnetic imaging.
BIOMAGNETIC_IMAGING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality biomagnetic imaging.
BIOR - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
bior_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BIORAD - Static variable in class gov.nih.mipav.model.file.FileUtility: Used by the Bio-Rad Pic format. extension: .pic && fileID(54L)==12345
biorthogonal - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
BiorthogonalWavelets - Class in gov.nih.mipav.model.algorithms.filters: Copyright (c) 2012, Brian Moore Copyright (c) 2004, Ben Barrowes All rights reserved.
BiorthogonalWavelets(ModelImage, ModelImage, ModelImage, ModelImage, int, double, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
BiorthogonalWavelets.realImaginaryComparator - Class in gov.nih.mipav.model.algorithms.filters
BiorthogonalWavelets.realImaginaryItem - Class in gov.nih.mipav.model.algorithms.filters
birthField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
bisect(delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
bisection(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: Returns Float which is null if no root is found; otherwise contains the value of the root.
BISECTION - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
BISNEW(int[], double, double, double, double[], double[], double[], double[], double[], double, int, double, double, double[], double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bit - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
BIT - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
BIT_BUF_SIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
BIT16 - Static variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
BIT8 - Static variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
bitBuffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
bitBuffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
bitCount - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
bitCount - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
bitCount - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
bitCount - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
bitDepth - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
bitDepth - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The bit-depth of the input file (must be between 1 and 31)
BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
BITMAP - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "BM" - Windows or OS/2 bitmap
BITMAP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "BM" - Windows or OS/2 bitmap
BitmapType(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType
bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
bitMask - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Useful bit mask for getting appropriate bits out of number.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Bits per pixel.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Bits per pixel
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Bits per pixel.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
bitPointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bitread_perm_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
bitread_working_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_working_state
BITREV(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
bitrv2(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv208(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv208neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv216(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv216neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv2conj(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bits - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Read in DHT header.
bits - Variable in class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL
bits() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Determines the number of significant figures of machine precision to arrive at the size of the array the numbers must be stored in to get the accuracy of the solution.
BITS - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
BITS - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
BITS_IN_JSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Bits allocated per pixel.
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRaw
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRawChunk
bitsAvail - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
bitsAvail - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
bitset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: bitset for src image
BITSET - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: DOCUMENT ME!
BitSetUtility() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
bitsLeft - Variable in class gov.nih.mipav.model.file.FileSVS
bitsLeft - Variable in class gov.nih.mipav.model.file.FileTiff
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileBase: DOCUMENT ME!
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileGESigna4X
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
bitsPerSample - Variable in class gov.nih.mipav.model.file.FileSVS
bitsPerSample - Variable in class gov.nih.mipav.model.file.FileTiff
bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Bits stored per pixel>
bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bitsStored - Variable in class gov.nih.mipav.model.file.FileRaw
bitsStored - Variable in class gov.nih.mipav.model.file.FileRawChunk
bitstate - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
bitsToGet - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bitStreamEOF() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.BitSwapTable
bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.BitSwapTable
bitwise_and(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bivariateCubicCoefficients(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
bivariateCubicCoefficients5By5(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
bKGD - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
bkvar - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
bkvarf - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
black - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
BLACK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
BLACK - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
BLACK - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
BlackBody - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Customized LUTs
blackEnd - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: gray scale value at which the black membership function ends the linear transition from 1 at the lowest gray scale value to 0
blackEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
blackImage - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: used to create the "selected" state of the buttons
blackImage - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
blackValue0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blah - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: blank image
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Radio button selected if inserted slices are blank.
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Blank slice type - the inserted slice is blank.
BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Blank slice type - the inserted slice is blank.
BLANK - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
BLANK - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: BLANK String
blank_continuous_wavelet() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
blank_discrete_wavelet(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BLANK_OVERLAY - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: blank overlay string.
BLANK_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
BLANK_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Blank volume type - the inserted volume is blank.
BlankCanvasFallback() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback: Creates a new ContourPlot.BlankCanvasFallback instance.
blankCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Custom cursor: no cursor.
blankFramesSent - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
BlankJistHook - Class in gov.nih.mipav.view.dialogs: This class is an example class for tying existing plugins into the JIST interface.
BlankJistHook() - Constructor for class gov.nih.mipav.view.dialogs.BlankJistHook
blanklabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
BLEACH_ROI - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
bleachKnotX - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachKnotY - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
blend(int, int, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
blend(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Sets blending between imageA and imageB.
Blend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect: Set surface blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect: Sets surface blend/transparency value for alph-blending in the shader.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Set object blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect: Set the blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect: Set the blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages: Sets the blend factor shader parameter between imageA and imageB.
blendBuffers(BufferedImage, BufferedImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Blend two BufferedImages, representing the left and right-eye views into a Red-Cyan stereo anaglyph.
blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Blends two packed-integer colors (RGB) to create a Red-Cyan anaglyph.
blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: blendColor: blends two colors in ARGB format from the BufferedImage class, using an alpha value of 0.5.
BlendColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blendComposite - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
blendSlider - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Opacity slider of texture 3D volume opacity changes.
blendSlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Opacity slider of texture 3D volume opacity changes.
BLGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
blind_deconvolution_example() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
BlindDeblur - Class in gov.nih.mipav.model.algorithms
BlindDeblur() - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
BlindDeblur(ModelImage, ModelImage, ModelImage, String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
BlindDeblur.Pair<T,U> - Class in gov.nih.mipav.model.algorithms
blist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The right end points of the subintervals in the partition of the given integration range (lower, upper).
blist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The right end points of the subintervals in the partition of the given integration range (lower, upper).
blk_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
blob - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.tliop
block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
block - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
block - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
Block() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
Block(int[], int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
Block(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
block_data_list() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
block_diagonal_EtE_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_EtE_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_FtF_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_FtF_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
block_id - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Cell
block_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
block_pair_container - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
block_positions_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
BLOCK_SENSITIVE_PEAK_SIGNAL_TO_NOISE_RATIO - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
block_size - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
block_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
block_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
block_structure() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
block_structure_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockComparator() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.BlockComparator
blockCRC - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BlockEvaluatePreparer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
blockHalf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
blockInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
BlockJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
BlockJacobiPreconditioner(CeresSolver.BlockSparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
BlockJacobiPreconditionerTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
BlockJacobiPreconditionerTestLargeProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockJacobiPreconditionerTestSmallProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blockList - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
BlockOrderingToScalarOrdering(Vector<Integer>, Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
blockOverrun() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
BlockPermutationToScalarPermutation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessDenseMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
BlockRandomAccessDiagonalMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
BlockRandomAccessDiagonalMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
BlockRandomAccessSparseMatrix(Vector<Integer>, Set<CeresSolver.Pair<Integer, Integer>>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
BlockRandomAccessSparseMatrixGetCell() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessSparseMatrixTestIntPairToLongOverflow() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessSparseMatrixTestLongToIntPair() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
blocks_in_MCU - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
blockSide - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
blockSide - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
blockSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BlockSparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockSparseMatrix(CeresSolver.CompressedRowBlockStructure) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixRandomMatrixOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
BlockSparseMatrixTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blocksperrow - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
bloodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Flags to indicate which color channels to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Flags indicate which color channel to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Flags indicate which color channel to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Border color, red, green, and blue components:
blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJFrameBase: Blue channel value of the paint color.
BLUE - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be monochrome-blue.
BLUE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Blue channel.
BLUE - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
BLUE - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
BLUE - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The blue channel transfer function.
BLUE - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The blue channel transfer function.
BLUE_CHANNEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: BLUE CHANNEL String
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Blue channel.
BLUE_WEIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
blue1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
blue1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
blue2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
BlueA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueArray - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
blueArray - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BlueB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The blue sphere branch group that branches underneath the vasculatureBG, and represents the blue sphere branch group.
blueBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
blueChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueCheckbox - Variable in class gov.nih.mipav.view.components.JPanelColorChannels: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to select blue image.
blueCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: checkbox for turning on / off the blue component of the color look-up table.
blueCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Blue channel histogram check box A, B.
blueCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Blue channel histogram check box A, B.
blueCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Function that maps the blue function of the LUT.
blueLine - Variable in class gov.nih.mipav.model.structures.ModelRGB: Function that maps the blue function of the LUT.
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
blueNorm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
blueOffset - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BlueOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
BlueOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueRequested - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
blueRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
blueRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueShiftColors - Variable in class gov.nih.mipav.view.ColorWheel: array of r,g,b values after blue shifting
blueShiftColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: arry of r,g,b after blue shift *
blueSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The geometry group of the blue sphere.
blueSphereTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: blue sphere transform group that set up the translation.
blueText - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Weighting values for the red, green, and blue channels.
blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Weighting values for the red, green, and blue channels.
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
blueVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: when true, blur the output
blur - Variable in class gov.nih.mipav.model.algorithms.MotionDetection
blur - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
blur(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Returns a blurred image of the input image.
BLUR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
BLUR_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory
BLUR_KERNEL_SIZE - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
BLUR_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: minimum value for blurring, at 1.0.
blur_x_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blur_y_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blur_z_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurAllRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for blurring the face / skull.
blurBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Blur image check box.
blurCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Blurs the face mask voxels The blurred face volume is copied into the ModelImage and displayed to the user.
blurFaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for blurring just the face.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
bluring - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Blur the final image to reduce voxel contrast.
blurR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
blurredImageSpectrum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Blurred input image.
blurredReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Blurred reference image.
blurredSpectrumImags - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredSpectrumReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurringDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurringDiameterText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurringFreq - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: user-selectable variables used in the FFT-blurring operation used as interim variables in starting the algorithm op.
blurringFreqText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurryImage - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageExtension - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageFileDirectory - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageFileName - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: The amount to blur to smooth surface.
blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: The amount to blur to smooth surface.
blurSigma - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: The amount to blur to smooth surface.
blurTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurValue - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
bm - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
BM3D - Class in gov.nih.mipav.model.algorithms.filters
BM3D(ModelImage[], ModelImage, boolean, double, int, int, int, boolean, String, double, int, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.BM3D
bm3d_1st_step(double, ModelImage, int, int, int, int, double, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
bm3d_2nd_step(double, ModelImage, ModelImage, int, int, int, int, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
BM3D.indexValueComparator - Class in gov.nih.mipav.model.algorithms.filters
BM3D.indexValueItem - Class in gov.nih.mipav.model.algorithms.filters
bm3dAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
BM3Dwavedec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BM3Dwaverec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BMatrixButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
bmatrixFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: B Matrix file name
bmatrixPath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: bmatrix path
bMatrixVals - Variable in class gov.nih.mipav.model.file.DTIParameters
bMatrixVals - Variable in class gov.nih.mipav.model.file.FileBRUKER
bmatValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
BMCANP(double, double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BMCAP1(double[], double[], double, int, int, int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[][], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Bmp - gov.nih.mipav.model.file.MetadataExtractor.FileType
BMP - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .bmp.
BMP_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
BMP_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Bmp multifile
BMPHC1(int, double[], double[], double[], int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BmpHeaderDescriptor(MetadataExtractor.BmpHeaderDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
BmpHeaderDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
BMPHYC(int, double[], double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BmpMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpMetadataReader
BmpReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
BmpReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest
bmtxtFileBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: browse button
bmtxtFilePath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This is the full path to the b matrix file
bmtxtFilePathTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: path to bmatrix file
bmtxtFileRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: b-matrix file option
bmv(int, double[][], double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bndind - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
bndptr - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
bNeedsRedraw - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Flag is set if one of the controls changed a value and the renderering needs to be redrawn when the mouse is released.
bodyPart - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to toggle borders around painted areas.
bogusShowPrivateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
boldBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: checkbox for bold style.
bolus - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
BOn - Variable in class gov.nih.mipav.model.structures.ModelRGB: Flag indicating whether the blue channel should be displayed.
BONE - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function to be yellow-ish orange which is supposed to make bones look good.
BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates a bone in the image.
BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates a bone in the image.
boneBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the bone.
bonePresetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: DOCUMENT ME!
BOOLEAN - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type Boolean (1 bit per voxel).
BOOLEAN - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
BOOLEAN - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type Boolean (1 bit per voxel).
BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
BOOLEAN_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type boolean.
booleanBox - Variable in class gov.nih.mipav.view.JPanelEditBoolean: DOCUMENT ME!
booleanGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
bootstrap() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
bootstrapWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacement() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
bootstrapWithoutReplacementWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
border - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
BORDER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox: This code is a port of the MATLAB Pyramid Toolbox =========================== matlabPyrTools ============================ This package contains some MatLab tools for multi-scale image processing.
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
border_widthText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
BORDER1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
BORDER2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
borderActiveImage - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
borderB - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: false if column radio button selected.
borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderClearAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Removes objects that touch (i.e., are connected to) the border
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Removes objects that touch (i.e., are connected to) the border
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Removes objects that touch (i.e., are connected to) the border
borderCol - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
borderCol - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: z slice.
borderColor - Variable in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
borderColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: color for the line border surrounding each image in the light-box.
borderColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Color for the line border surrounding each image in the light-box.
BorderedButton - Class in gov.nih.mipav.view: This class was created for use in the JDialogMultiPaint class.
BorderedButton(String) - Constructor for class gov.nih.mipav.view.BorderedButton: Creates a new BorderedButton object.
borderG - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
borderOn - Variable in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
borderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
borderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to toggle borders around painted areas.
borderR - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderSize - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: spacing for the line border surrounding each image in the light-box.
borderSize - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Spacing for the line border surrounding each image in the light-box.
bordersizeL - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
bordersizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderTitles - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
bot - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
BOTH - gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
BOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: This code is ported from MATLAB routines adjacency, affinity, afc, and irfc written by Joakim Lindblad References: 1.)
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: wake up condition for awt, component and mouse.
bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: wake up condition for awt, component and mouse.
bothPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
botPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
bottom - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
Bottom() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
BOTTOM - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
BOTTOM_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Bottom bounding edge of the canvas in world coordinates.
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
bottomFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
bottomLeftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
bottomPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
bottomPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
bottomPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
bottomRightBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
bottomsite - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
botX - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
botY - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
botZ - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
bound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
bound - Variable in class gov.nih.mipav.model.algorithms.Integration2: finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
bound - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
bound_list(GenericPolygonClipper.lmt_node[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
boundA - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower bound of the exclusion
boundariesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
boundariesImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
boundariesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge
boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
Boundary - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Boundary(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Boundary
BOUNDARY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: DOCUMENT ME!
BOUNDARY - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates only the boundary of the VOI should be displayed.
BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_DIRICHLET - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_PERIODIC - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_REFLECTING - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
boundary_mode_mirror - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will mirror the Img for out of bounds positions
boundary_mode_repeat_edge - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will repeat the edge of of an Img for out of bounds positions.
boundary_mode_repeat_image - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will repeat the Img for out of bounds positions.
boundary_mode_zero - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will return 0 for out of bounds positions.
boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
BoundaryEmphasis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: contribution of the boundary emphasis slider and therefor the contribution of the 2nd derivative of the data.
boundaryEmphasisSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Boundary emphasis slider slider.
boundaryFinding(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Dynamic narrow band tracing algorithm.
boundaryImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: boundary image.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Maximum iterations to generate new boundary.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Maximum number of snake iterations.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Maximum iterations to generate new boundary.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Maximum number of snake iterations.
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
boundB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper bound of the exclusion
boundingBox - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
boundingBox - Variable in class gov.nih.mipav.model.structures.VOI: If true the bounding box of the VOI should be displayed.
BoundingBoxColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
BoundingBoxEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render
BoundingBoxEffect(Vector3f, Vector3f, Vector3f, Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
boundingBoxField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Bounding box control panel.
boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Bounding box control panel.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check box for turning bounding boxes on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check box for turning bounding boxes on and off.
boundingCheckA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundingCheckY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundingCheckZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundLB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower blue bound of the exclusion
boundLG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower green bound of the exclusion
boundLR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower red bound of the exclusion
bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
bounds - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: A BoundingSphere that contains the entire scene.
bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes: DOCUMENT ME!
bounds_lower - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds_type - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds_upper - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
boundsConstrained() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
boundsForText(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas: Calls ContourPlot.CharacterAtlas.boundsForText(int, Font) with corresponding Ubuntu Mono font.
boundsForText(int, Font) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas: Calculates the bounding rectangle for a specific number of characters in the specified font.
boundUB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper blue bound of the exclusion
boundUG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper green bound of the exclusion
boundUR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper red bound of the exclusion
box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
box - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
box - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: image volume bounding box.
box() - Constructor for class gov.nih.mipav.model.file.libjpeg.box
Box(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Called by CreateBox.
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BOX_C0_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C0_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
box_x - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < vector of all patches, corresponding to loc.
box_y - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < bounding box (x) for patch locations (top-left corner).
box_z - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < bounding box (y) for patch locations.
Box3 - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Box3() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Box3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Point3, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Point3, Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3DFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Box3DFunction
boxA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
BoxBODCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.BoxBODCostFunction
BoxBODData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
BoxBODObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
boxBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
boxCount2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxCount3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxCountAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount: DOCUMENT ME!
boxCountBoundary2D(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
boxDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Dialog for recording and playing back mouse events.
boxdiv2(byte[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxdiv3(byte[][][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxes - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
boxfilter(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
boxFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The outside box frame.
boxHeight - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
boxHeight - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Width and height of zoom box
boxIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: DOCUMENT ME!
boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The frame around the AXIAL, CORONAL, SAGITTAL slices:
boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The frame around the AXIAL, CORONAL, SAGITTAL slices:
boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The transformed boxSlices frames used to sample the volume data along diagonal slices:
boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The transformed boxSlices frames used to sample the volume data along diagonal slices:
boxSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: The frame around the x slice.
boxStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
boxStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
BoxToIBox(Box3, Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
boxWidth - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
boxWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Width and height of zoom box
boxX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
boxY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: cropped image boundary info.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped image boundary.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: cropped image boundary info.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped image boundary.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: bounding box for crop the image.
boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: pointer to the present position in the buffer
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: pointer to the current position in the buffer
bpconv(double[], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
BPLIST_HEADER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
BplistReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: image depth in bits
bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: image depth in bits
bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
bpsconv(double[], int, double[], double[], int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
bpser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bPtr - Variable in class gov.nih.mipav.model.file.FileDicomBase: Buffer pointer (aka file pointer).
BQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
br - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
br - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
br - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The initial bracket size for first iteration of ELSUNC.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The initial bracket size for first iteration of Powell.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Sets minimum and maximum limits as initial guess -+ unit_tolerance[i]*bracketBound.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: The bracket size around the minimum in multiples of unit_tolerance in the first iteration of Powell's algorithm.
bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
BracketingPhase(CeresSolver.FunctionSample, double, CeresSolver.FunctionSample, CeresSolver.FunctionSample, boolean[], CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch
BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
BradleyInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
brainMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Denotes which pixels undergo SWI processing.
brainRegionSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size of the region we have identified as the brain.
brainRegionThresholdRatio - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The proportion of the total number of pixels in the volume that a region should be before we decide that it's probably the brain.
BRAINSURFACE_FLATTENER - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Rendering the brainsurfaceFlattener objects.
brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Rendering the brainsurfaceFlattener objects.
branchButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
branchingFactor - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Constructor.
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Constructor.
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Constructor.
bratio(double, double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
brcmp1(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
brcomp(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
breadth_first_search() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
breakDownArea - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2: Used in dqagpe This array must always be >= 2 in length.
breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Used in dqagpe This array must always be >= 2 in length.
breakSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Defaults to the maximum buffer size in streaming.
breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
brickFloatFacs - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickKeywordsString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickLabsString - Variable in class gov.nih.mipav.model.file.FileAfni: Sub-brick names
brickLabsString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: Name for each sub-brick
brickStatAux - Variable in class gov.nih.mipav.model.file.FileAfni: Each BLT is defined by a struct that contains two 3x3 matrices and four 3-vectors (2*3*3 + 4*3 = the 30 numbers).
brickStatAux - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
brickStats - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickTypeNumber - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
bright_on_dark - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
bright_on_dark - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
brightness - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.model.file.FileSVS
brightness - Variable in class gov.nih.mipav.model.file.FileTiff
brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: offset ranging from -255 to 255 add to each scaled red, green, and blue
brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightness() - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightness(int) - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightnessBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: buffer for storing the original maximum of the OpenCL buffer
brightnessContrastPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightnessLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: a pixel (no matter whether represented as a float or int), has a brightnessLevel, which is in the histogram as a value between 0 and totalBins.
brightnessSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
brightnessSlider - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightnessSlider - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
brightnessTable - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
brightOnDarkCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
brightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightPanel - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightSlider - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
brikDataType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brikFileName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
bringToFront(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Checks whether or not the dialog exists; if it does, it brings the dialog to front.
bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: checks whether or not the dialog exists; if it does, it brings the dialog to front.
bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: checks whether or not the dialog exists; if it does, it brings the dialog to front.
BriskDescriptorExtractor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
BriskLayer(AlgorithmBRISK.BriskLayer, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
BriskLayer(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
BriskLongPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
BriskPatternPoint() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
briskScaleSpace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
BriskShortPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NESolve
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BrownAndDennisFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownAndDennisFunction
BrownBadlyScaledFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownBadlyScaledFunction
BROWSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
BROWSE - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
browseDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
browseOutputButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
browser - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: File chooser for the user to select an existing file for attachment
brox_optic_flow(double[], double[], double[], double[], int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the optic flow with the Brox spatial method
brox_optic_flow(double[], double[], double[], double[], int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Multiscale approach for computing the optical flow
brox_optic_flow(double[], double[], double[], int, int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the optic flow with the Brox temporal method
brox_optic_flow(double[], double[], double[], int, int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Multiscale approach for computing the optical flow
broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BRUKER - Static variable in class gov.nih.mipav.model.file.FileUtility: Bruker file format.
bruteForceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: CheckBox to turn brute-force registration on or off:.
bruteForceDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Dialog to set the brute-force registration parameters:.
Bs - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
bs_size - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
Bs2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsGetint() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetInt32() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetIntVS(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetUChar() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bside - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
bsLive - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsLive - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BSPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bspline(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on black and white image data.
bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
Bspline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
BSPLINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
bSpline2D(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
bSpline2DC(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Cubic bspline interpolation.
BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Cubic bspline interpolation.
bSpline3D(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
bSpline3DC(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Quadratic bspline interpolation.
BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Quadratic bspline interpolation.
bspline4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on black and white image data in 4D image.
BSplineButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
bsplineC(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on color image data.
bsplineC4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on color image data in 4D image.
BSplineControlPointImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BsplineCurve(Vector3f[], int, int, int, Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Compute Bspline segment
BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
bSplineJet1D(byte, float, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXY(int, float, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXYZ(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXYZ_double(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
BSplineKernelFunction - Class in gov.nih.mipav.model.structures
BSplineKernelFunction() - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
BSplineKernelFunction(int) - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
BSplineKernelFunctionTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineLattice2Df - Class in gov.nih.mipav.model.structures: This class manages a 2D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice2Df(BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice2Df: Create 2D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice3Df - Class in gov.nih.mipav.model.structures: This class manages a 3D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice3Df(BSplineBasisDiscretef, BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice3Df: Create 3D lattice of control points given a discretized B-Spline basis for each axis.
BSplineRegistration2Df - Class in gov.nih.mipav.model.algorithms.registration: This class is used to register a 2D source image to a 2D target image.
BSplineRegistration2Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Create instance to be used for registration.
BSplineRegistration3Df - Class in gov.nih.mipav.model.algorithms.registration: This class is used to register a 3D source image to a 3D target image.
BSplineRegistration3Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Create instance to be used for registration.
BSplineRegistrationBasef - Class in gov.nih.mipav.model.algorithms.registration: This is a common base class for all BSpline-based registrations.
BSplineRegistrationBasef(ModelSimpleImage, ModelSimpleImage, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Create instance to be used for registration.
BSplineScatteredDataPointSetToImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineScatteredDataPointSetToImageFilterTest2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineShapeFunctions - Variable in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
bsPutint(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsPutIntVS(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsPutUChar(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsR(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsSetStream(InputStream) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsSetStream(OutputStream) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsStream - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsStream - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bstate - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
bSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Boolean flag set to true to indicate whether the registration is performed to a subsampled target image.
bsW(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bt - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
BT - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
bTableSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
btArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the array list of the texts on the buttons
BtB_method - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
btdtr(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BTDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
btnAdd - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
btnGpuComp - Variable in class gov.nih.mipav.view.ViewUserInterface: The button indicating that MIPAV is set to run OpenCL -- GPU based algorithms
btnInvisible - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
btnMoveDown - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
btnMoveUp - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
btnMultiCore - Variable in class gov.nih.mipav.view.ViewUserInterface: The button indicating that MIPAV is set to run in a threaded environment
btnRemove - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
btol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
btrack - Variable in class gov.nih.mipav.model.algorithms.NESolve
btrunc(int[], boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
btrunc(int[], boolean, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BucketSort(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
BucketSortCroiss(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
buf - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: temporary place where each byte is read or written
buf - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
buf - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: The line buffer.
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: The line buffer.
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The line buffer.
buf_size - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
buff - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Buffer for original source image.
buffer - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: buffer - not included in original class
buffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
buffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
buffer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
buffer_full - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer_gc - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
buffer_gc - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
buffer_layout - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Chunk
BUFFER_SIZE - Static variable in class gov.nih.mipav.model.file.FileDicomBase: The size of the buffer that contains the tags of the DICOM image.
buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
BufferBase - Class in gov.nih.mipav.model.structures: This is an abstract buffer class that indicates the required methods of the sub-classes.
BufferBase() - Constructor for class gov.nih.mipav.model.structures.BufferBase
bufferBitSet - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferBoolean - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferBoolean() - Constructor for class gov.nih.mipav.model.structures.BufferBoolean: Default constructor.
BufferBoolean(int) - Constructor for class gov.nih.mipav.model.structures.BufferBoolean: Constructor that allocates memory.
BufferBoundsException(int, int, long) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
BufferBoundsException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
bufferBrain(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Appends the given brainMaskTemp by mmToPad in pixels in all directions.
bufferBW - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
bufferByte - Variable in class gov.nih.mipav.model.file.FileNIFTI: A byte array of the size of the NIFTI header + 4 extension bytes.
bufferByte - Variable in class gov.nih.mipav.model.file.FilePackBit: Buffer used to store image of type byte.
bufferByte - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
bufferByte - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
BufferByte - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferByte() - Constructor for class gov.nih.mipav.model.structures.BufferByte: Default constructor.
BufferByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferByte: Constructor that allocates memory.
bufferByte2 - Variable in class gov.nih.mipav.model.file.FilePackBit: Second buffer used to store image of type byte.
bufferData - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
bufferDouble - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferDouble - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferDouble() - Constructor for class gov.nih.mipav.model.structures.BufferDouble: Default constructor.
BufferDouble(int) - Constructor for class gov.nih.mipav.model.structures.BufferDouble: Constructor that allocates memory.
buffered_image - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
BufferedImageFactory() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory
bufferFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Buffer factor, 1 usually, 4 for color images.
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: 1 for black and white, 4 for color.
bufferFloat - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferFloat - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferFloat() - Constructor for class gov.nih.mipav.model.structures.BufferFloat: Default constructor.
BufferFloat(int) - Constructor for class gov.nih.mipav.model.structures.BufferFloat: Constructor that allocates memory.
bufferImageHeader - Variable in class gov.nih.mipav.model.file.FileAnalyze: Storage buffer for the header.
bufferInt - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferInt - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferInt() - Constructor for class gov.nih.mipav.model.structures.BufferInt: Default constructor.
BufferInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferInt: Constructor that allocates memory.
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
bufferLong - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferLong - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferLong() - Constructor for class gov.nih.mipav.model.structures.BufferLong: Default constructor.
BufferLong(int) - Constructor for class gov.nih.mipav.model.structures.BufferLong: Constructor that allocates memory.
bufferReader - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
bufferShort - Variable in class gov.nih.mipav.model.file.FilePackBit: Buffer used to store image of type short or unsigned byte.
bufferShort - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferShort - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferShort() - Constructor for class gov.nih.mipav.model.structures.BufferShort: Default constructor.
BufferShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferShort: Constructor that allocates memory.
bufferSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: The total capacity of the buffer.
bufferSize - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FilePackBit: Size of buffer to be allocated.
bufferSize - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
bufferToInt16(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 2 byte array into a 16 bit integer of proper endianess.
bufferToInt32(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 4 byte array into a 32 bit integer of proper endianess.
bufferType - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Type of image buffer (i.e.
bufferTypeStr - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Deprecated.
should use enums directly
BufferUByte - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUByte() - Constructor for class gov.nih.mipav.model.structures.BufferUByte: Default constructor.
BufferUByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferUByte: Constructor that allocates memory for the buffer.
BufferUInt - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUInt() - Constructor for class gov.nih.mipav.model.structures.BufferUInt: Default constructor.
BufferUInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferUInt: Constructor that allocates memory.
BufferUShort - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUShort() - Constructor for class gov.nih.mipav.model.structures.BufferUShort: Default constructor.
BufferUShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferUShort: Constructor that allocates memory.
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
bufferWrite - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: maximum of the image buffer.
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: minimum of the image buffer.
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: DOCUMENT ME!
BUG_MAIL_URL - Static variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: URL of the page we use to actually send the bug report email.
BugType(String) - Constructor for enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
bugTypeComboBox - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
build - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
build_3D_group(Vector<Vector<double[][]>>, int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
build_bg_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build_dog(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
build_gpyr(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
build_intersection_table(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_lmt(GenericPolygonClipper.lmt_node[], GenericPolygonClipper.sb_tree[], int[], VOIBaseVector, int, GenericPolygonClipper.gpc_op) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_rgb_y_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build_sbt(int[], double[], GenericPolygonClipper.sb_tree) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build3DMousePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the clipping control panel for the surface render.
build3DVOIToolBar(JToolBar, int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Build advanced settings dialog.
buildAdvancedDialog(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Build advanced settings dialog.
buildAdvancedDialog(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Build advanced settings dialog.
BuildAllLevels(int, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Wrapper for automate model generation.
BuildAllLevels(int, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Driver method for model generation.
BuildAllLevels(int, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Driver method for model generation.
buildAlphaSlider() - Method in class gov.nih.mipav.view.ViewControlsImage: Builds the slider used to control the alpha blending.
buildAnchorPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Method to build the toolbar for the Animate frame.
buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Method to build the toolbar for the Animate frame.
buildAnnotationTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice: Creates the table that displays the annotation information.
buildAnnotationTable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations: Creates the table that displays the annotation information.
buildAnonDirectoryDialog() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the anonymize directory dialog and displays it.
buildApplyButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the cancel button.
buildApplyButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the cancel button.
buildBasicLUTToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds a toolbar with just the basic lut buttons on it.
buildBasicTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildBlendPanel() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the blend slider control panel.
buildBlendPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the blend slider control panel.
buildBlurringPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on blurring the original image.
buildBoneBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the bone ( yellow sphere ) branch group image scene graph.
buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Build the boudning box for X, Y, Z slices.
buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Build the boudning box for X, Y, Z slices.
buildBoundsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buildBrainsurfaceFlattener() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Brainsurface Flattener panel:
buildBrightContPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Initializes GUI components and displays dialog.
buildBrightContPanel() - Method in class gov.nih.mipav.view.ViewImageDirectory: Initializes GUI components and displays dialog.
buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Initializes GUI components and displays dialog.
buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildBruteForceDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Builds the bruteForceDialog so the user can set the brute-force registration parameters:
buildBurnPackingPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView: Build the image scene graph structure.
buildBurnSceneGraph(float, float, Color3f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Only used by the default burning point type to reset the image sence graph when the burning sphere radius and time changes.
buildBurnVisPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab containing the color, opac, picking, labels, etc for burns.
buildButton(CustomUIBuilder.UIParams) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates a JButton using a UIParams parameters
buildButton(String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar button.
buildButtonPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates an OK Button, which is relabeled "Save", an "Ignore" button, a "Cancel" and a "Help" button.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: creates the buttons, USE PREFERENCES, OKAY, CANCEL, and HELP.
buildButtons(GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the close button.
buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the camera snap shot panel.
buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the surface render.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the cancel button.
buildCancelButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
buildCenterPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildCheckBox(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new check box component.
buildCheckBox(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildCheckBox(String, boolean, ItemListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new check box component.
buildCheckBoxMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Builds a JCheckBox with the given parameters and adds it to the Vector of menu items.
buildCheckBoxMenuItem(String, String, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Static method for building JCheckBoxes with the given parameters.
buildCheckBoxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
buildCirclePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildClamping(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: controls the entire creation of the clamping panel and all controls related to the display of the clamping parameter. places the clamping panel into the holder panel.
buildClipPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the clipping control panel for the surface render.
buildClipPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the clipping control panel for the surface render.
buildClipPlanesTree() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build cliping planes tree structure.
buildCloseButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the close button.
buildCloseButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the close button.
buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Method to build the toolbar for the Animate frame.
buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Method to build the toolbar for the Animate frame.
buildColorMap() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Builds which cells to display as light blue and green.
buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the controls to set the color of the border the and color of the background.
buildColorTable(Vector<File>) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Attempted to find dependencies of used files after they were temporarily added to the class path (included unpacking jars)
buildColourPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: makes the panel to allow user selection of colour channels to filter. nothing editable when image not in ARGB or ARGB_USHORT or ARGB_UINTEGER or ARGB_FLOAT
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the ComboBox panel editing units of measure.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: buildComboBox.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Builds a list of images.
buildComboBox(String, Object[]) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildComboBox(String, Object[], int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Builds a list of images to concatenate to image A.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Builds a list of images to operate on from the template image.
buildComboBoxImage(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Builds a list of images to register to the template image.
buildConnections() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Builds a list of cross-references, so that connections[i] contains all the verticies that are connected to vertex at i.
buildConnections() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Builds a list of cross-references, so that connections[i] contains all the vertices that are connected to vertex at i.
buildContentPane(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: Builds the content pane for the dialog, making the text fields and labels.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Creates the mouse control panels.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the light control panel.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Panel that has a slider for the image.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Build the light control panel.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: panel that sets the at rest frame number and the desired frames per second.
buildControlPanel(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: panel that sets the at rest frame number and the desired frames per second.
buildControlPanel(ModelImage, boolean) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the interface panel.
buildConventionalTabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: This method builds the conventional tabs based on possibly pre-defined values.
buildConventionalTreT1Panel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Create the rotation control cubic box.
buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Create the rotation control cubic box.
buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Build the cubic branch under the objRootBG.
buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Build the cubic branch under the objRootBG.
buildCursors() - Static method in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
buildCurveTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves: Creates the table that displays the annotation information.
buildCustomBlendPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
buildDatePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that designed for inputing study duration information.
buildDecimalField(String, double) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildDefaultFonts() - Static method in class gov.nih.mipav.view.MipavUtil: This should only be called once when MIPAV starts, and then if the user changes the font options through Program Options to rebuild the fonts used in GUI building.
buildDefaultShortcuts() - Static method in class gov.nih.mipav.view.Preferences: Builds the default shortcut hashtable (not user modifiable).
buildDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: setup the lightbox's control dialog.
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Builds the dialog
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Builds the dialog
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Builds main dialog.
buildDICOMDIRFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildDicomSortOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Method for building DICOM tag/name sorting options.
buildDimensionNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: Creates the dimension node for files that are not Minc2.0
buildDimensionsPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildDimPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildDisabledTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a text button for the toolbar.
buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the display control panel for the surface render.
buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the display control panel for the surface render.
buildDistancePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildDivisionComboBoxes() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Creates the combo-box that allows user to select the number of divisions in the image when building the histogram.
buildDTIColorLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildDTIParametersPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
buildEditDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the edit dicom tag interface.
buildEntryPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Build the entry point image scene graph structure.
buildEntryPointBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the entry point ( green sphere ) branch group image scene graph.
buildEPIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildEValueLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildEVLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildExtentsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
buildFacesDescription(MetadataExtractor.Face[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
buildFALoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildFiberTrackingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, boolean, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFilePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildFilterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
buildFitFunctPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creates a panel to edit various fitted function features.
buildFittingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buildFlythroughPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the flythru move control panel.
buildFlythruMovePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the flythru move control panel.
buildFlythruPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the flythru control panel.
buildFlyThruToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the fly through toolbar.
buildFontPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: builds the panel that allows customization of font style/size/color.
BuildFromFiles(CAAMModel, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from text based file
BuildFromFiles(CAAMModel, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from text based file and AAM configuration file
BuildFromFiles(CAAMModel, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Diver method for model generation.
BuildFromFiles(CAAMModel, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Diver method for model generation.
BuildFromSACF(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Wrapper to build the sequential model from the given aam configuration files.
BuildFromSACF(String, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Driver method for model generation.
BuildFromSACF(String, Vector<String>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Diver method for model generation.
buildFunctionPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creates a panel where various features of the functions can be edited, such as showing the legend, and changing function names.
buildFuzzyCMeanPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildFuzzyPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
buildGaborPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildGeneralPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the "edit image name" panel.
buildGeneralToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the general image toolbar, with buttons for saving the image, the histogram, etc., and a slider for a 3D image.
buildGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Geodesic control panel.
buildGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the Geodesic control panel.
buildGrayTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildGrid(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Builds the grid, with or without a pre-loaded BitSet (from an on-disk paintbrush)
buildGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewSplashScreen: GUI initialization.
buildHaralickPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildHardThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod: No border
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the help button.
buildHelpText() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the helping manual in the help panel - one of the three panels in the tabbed panel.
buildHIFIPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildHIFITabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildHistogram() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: make histogram uses the class-global vars kernel and histogram.
buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The histogram control panel of the lookup table.
buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The histogram control panel of the lookup table.
buildHostPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the host panel by calling methods to build the server and storage panels.
buildHTMLMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildIconButton(String, String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build an icon button for the toolbar.
buildIconButton(Icon, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to build a icon button.
buildIgnoreButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates a button labelled "Ignore" and connects it to the action listener event list.
buildImage(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Opens preview of image in frame
buildImage(String, String) - Method in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
buildImageAlignToolBar() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
buildImageComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a list of images.
buildImageDependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Shows the 2D histogram image.
buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Shows the 2D histogram image.
buildImageDestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the destination panel which consists of the directory textline, the browse button, and a sub-panel to provide the name of the randomized image.
buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Builds a list of images.
buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Builds a list of images.
buildImageIndependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildImageList() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
buildImageNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: Builds the image node (done for all filetypes when writing to MINC2.0 HDF5
buildImageObject(int, int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Shows the image.
buildImageObject(int, String) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: For generating the display of 1 or 2 RGB images.
buildImageOriginPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
buildImagePanel() - Method in class gov.nih.mipav.view.ViewImageDirectory: Sets up the image panel and the table that will store basic header info, and returns the panel containing these.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Builds a list of images.
buildImportDataPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildInfoNode(ModelImage, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: builds the Info node for files that were not originally MINC 2.0 HDF5
buildIntegerField(String, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildInterface() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildIRSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildIRSPGRPanelGEInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildIRSPGRPanelSiemensInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildItem(JMenuItem, Object) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
BuildJacobianLayout(CeresSolver.Program, int, Vector<int[]>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
buildKernelPanel(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the panel that allow user to select the kernel size and shape of the image when building the histogram.
buildKernelShape(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the comboBox that allows user to define the way the neighboring pixels are chosen for the histogram.
buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the shape of the kernel (mask).
buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Creates the combo-box that allows user to select the shape of the kernel (mask).
buildKernelSize(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the editable text comboBox that allows user to define the number of neighboring pixels used for the histogram. the number given may only be odd, as this is the total number of pixels chosen on both sides.
buildKernelSizeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Build the panel.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildLabel(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a label with the proper font and font color.
buildLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: Build the label for the textField, try to standardize the label appearance in the GUI.
buildLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the label for the textField, try to standardize the label appearance in the GUI.
buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The label panel of the x, y, z slider position.
buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildLabelPanel() - Method in class gov.nih.mipav.view.ViewJFrameBase: The label panel of the x, y, z slider position.
buildLabels() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Convenience method created to simplify configureFrame().
buildLayout() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
buildLeftSubPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildLevelSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the level slider and places it in the slider panel.
buildLightPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the light control panel for the surface render.
buildLightPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the light control panel for the surface render.
buildList() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: DOCUMENT ME!
buildListingPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the listing panel.
buildListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the light list panel.
buildListPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Build the light list panel.
buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Instantiates and shows the "Load label file" dialog, which is used to load a text file containing the names of the colored labels.
buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String, JPanel) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
buildLocationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates a panel for the output log.
buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates a panel for the output log.
buildLUTPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Construct the panel LUT table viewing panel.
buildLUTs() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Convenience method created to simplify configureFrame().
buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.JPanelHistogram: Build the center part of the LUT toolbar.
buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.
buildLUTThresholdToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates the LUT thresholding toolbar.
buildLUTToolBarBottom() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the LUT toolbar, with buttons for quick-changing the LUT of the image.
buildLUTToolBarTop() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Build the top part of the LUT toolbar.
buildMagSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the image magnification slider.
buildMagSliderLabels(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds labels used by the magnification slider.
buildMagToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the image toolbar for zooming
buildMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildMainPanel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildMaskLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panel usd in the tabbed pane "transform" as appropriate for the number of dimensions of the image.
buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the matrixPanel.
buildMaximumSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the maximum size of the kernel (mask) when adaptive median filtering is selected.
buildMaxSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
buildMenu() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Builds the File menu for the HyperGraph interface.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Builds menu with load, save, and exit options.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Builds menus for the frame.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Builds menu.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a small menu with "New directory", "Refresh directory", "Reset file filter", and "Open image" options.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: This method builds a menu which contains the options Save image as and Close Animate.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: This method builds a menu which contains the options Save image as and Close Animate.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: This method builds a menu which contains the option Close Colocalization.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: This method builds a menu which contains the option Close ColocalizationRegression.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Builds the jmenubar and adds two options.. disregard series #s and exit/close
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Function that builds the menu of various tools to be used in conjunction with the graph. ie: opening / saving files, changing gridlines, title / axis labels, etc.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Creates the needed menus.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Creates the needed menus.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: this method builds a menu which contains the options Save image as and Close Registration.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: this method builds a menu which contains the options Save image as and Close Registration.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds menus for the User Interface.
buildMenu(String, int, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Static method for building a JMenu.
buildMenu(JFrame) - Method in class gov.nih.mipav.view.JFrameHistogram: This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenuBar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds a simple menubar for this frame (ViewJFrameLightBox).
buildMenuBar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds a simple menubar for this frame (ViewJFrameLightBox).
buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the menu bar for the dialog.
buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Builds a small menu with "Clear log" and "Overwrite" options.
buildMenuItem(CustomUIBuilder.UIParams, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Build a menu item using a pre-made UIParams
buildMenuItem(CustomUIBuilder.UIParams, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Creates a Menu Item using pre-packaged UIParams
buildMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildMenuItem(String, String, int, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
buildMessageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the message frame where user/program data can be displayed.
buildMessagePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Construct the Query retrieval message panel.
buildMinimumTickSpacing() - Method in class gov.nih.mipav.view.ViewJSlider: Sets values for minimum allowable tick spacing depending on size of GUI.
buildMinMaxImageStack(double[][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
buildMinMaxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
buildMinSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the min slider and places it in the slider panel.
buildModeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildModel(Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Build the model with the given model image and VOIs vector along
buildModel(Vector<ModelImage>, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Build the AAM model from the given image and VOIs vector
BuildModel(CAAMModel, Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from prostate images and VOIs
BuildModel(CAAMModel, Vector<ModelImage>, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model in supervised way, with given prostate images and VOIs.
buildModifyGraphPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creats a panel where various featuers of the graph can be edited, such as visbility of gridlines and minor tick marks, number of gridlines, background color, range, and labels for the title, x and y axiis.
buildMouseControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Creates the mouse control panels.
buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the mouse recorder panel.
buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the mouse control panel for the raycast render.
buildMousePanel(double) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the mouse panel.
buildMoviePanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Build the mouse recorder button panel.
buildName(String) - Method in class gov.nih.mipav.view.ViewVOIVector: Builds a new voi name by incrementing the given name.
buildNamedTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a text button for the toolbar.
buildNameSuggestionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates a name-suggestion panel.
buildNavigationModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the navigation mode control panel.
buildNewSourceTree(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates a new directory tree starting with directory as the root.
buildNoThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildNotResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the Cancel button.
buildOARButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: creates a JPanel to hold the Okay and Cancel buttons. in a FlowLayout; presets all the listeners to the buttons, the fonts and text colour.
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Uses the super method to create a standard OK Button, but then resets the button text to read "Save" leaving the action command string as normal: "OK".
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the OK button.
buildOKButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the OK button.
buildOKCancelButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds button panel consisting of OK, Cancel and Help buttons.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds panel for opacity control change on the triplanar X, Y, Z.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the volume opacity control panel for the surface render.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds panel for opacity control change on the triplanar X, Y, Z.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the volume opacity control panel for the surface render.
buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the OptionPanel.
buildOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildOrientPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the "orientation edit" panel.
buildOutputPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
buildOverlayStrings(FileInfoBase, String, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Builds the overlay Strings from the tag's value.
buildPadButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the Pad button for padding the blank images.
buildPage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds the panels for a page and adds them to the page.
buildPage() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds the panels for a page and adds them to the page.
buildPaintToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the paint toolbar
buildPaintToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the paint toolbar, with buttons for widths of paint brushes, color chooser, etc.
buildPanel() - Method in class gov.nih.mipav.view.JPanelHistogram: Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: builds each quadrant panel that has 4 buttons.
buildPanel(int, String, int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Build x slider control panel.
buildPanelA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the arbitrary clipping slider control panel.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelB() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelGM_A() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelGM_B() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelS() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build static clipping slider control panel.
buildPanelSInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build static inverse clipping slider control panel.
buildPanelX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build x slider control panel.
buildPanelXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build x negative clipping slider control panel.
buildPanelY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the y clipping slider control panel.
buildPanelYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the y negative clipping slider control panel.
buildPanelZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the z clipping slider control panel.
buildPanelZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the z negative clipping slider control panel.
buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
buildParSliceMap() - Method in class gov.nih.mipav.model.file.FilePARREC
buildParSliceMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildParVolMap() - Method in class gov.nih.mipav.model.file.FilePARREC
buildParVolMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildPasswordField() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to create a password field with the proper font and font color.
buildPasswordField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildPlugInsMenu(ActionListener) - Method in class gov.nih.mipav.view.ViewUserInterface: Called by either userInterface (this) or by another actionlistener (ViewJFrameImage) to build the plugins menu bar.
buildPluginsTree() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Starts process to build exact copy of installed plugin structure as tree nodes.
buildPreprocessingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Builds the preset panel to display the preset images and buttons.
buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Builds the preset panel to display the preset images and buttons.
buildPressedButtonBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new border of the type used when a toggle button is depressed.
buildProbeModelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab which allows the user to change the currently used probe model.
buildProbePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the adding surface control panel for the surface render.
buildProbePlacementPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab with controls / info used in probe placement before a burn.
buildProbes(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the three types of probe.
buildProbeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Setup the probe moving control panel that include x, y, z moving sliders.
buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Constructs progress bar.
buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Constructs progress bar.
buildPtInfoPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the patient information input panel.
BuildPyr(ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Builds an image pyramid (if its not cached beforehand).
buildQueryPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the DICOM Query panel, one of the three tabbed Panels in the DICOMQuery GUI.
buildQuickList() - Method in class gov.nih.mipav.view.ViewMenuBuilder: Builds the quicklist for the first time.
buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the radio button for fast input of study date range.
buildRadioButton(String, boolean, ButtonGroup) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new radio button component.
buildRadioButtonMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
buildRadioButtonMenuItem(String, String, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewMenuBuilder
buildRAM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
buildRandButtonPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
buildRandSelectionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: puts together the panel of recursive box and directory-randomization level radio button.
buildRawBuffer(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Fills the compData buffer from the vrBuffer.incomming buffers.
buildRayCastCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the raycast render.
buildRayCastOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the raycast render.
buildRayCastToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the raycast toolbar.
buildRegistrationToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: builds the first registration toolbar.
buildRegistrationToolBar(ActionListener, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: builds the first registration toolbar.
buildRenderModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the render mode control panel.
buildResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the OK button.
buildResamplePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the resample panel.
buildResampleStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Builds the Edit button.
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Builds the Edit button.
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Builds the reset button.
buildResetButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Build the reset button.
buildResetDefaultsButton() - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Builds the reset to defaults button.
BuildResidualLayout(CeresSolver.Program, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
buildResolutionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panels which is edited in the tabbed pane "resolutions".
buildRGBToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates the RGB histogram toolbar.
buildRGBToolBar(ActionListener) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method to build the toolbar for the RGB frame.
buildRowColPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: sets up the row and column panel.
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Instantiates and shows the "Save label file" dialog, which is used to save a text file containing the names of the colored labels.
buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildSaveGradBvalPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildScaleMax(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: define the possibilities of where the scale max comes from.
buildScriptToolBar(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the script toolbar, for quickly recording and playing back scripts.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Make a scroll frame and puts an image component into it.
buildScrollPane(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
buildScrollPane(JComponent) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Create a new scroll pane, containing a component.
buildScrollPane(JComponent, int, int) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Create a new scroll pane, containing a component.
buildScrollPanes() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Make a scroll frame and puts an image component into it.
buildScrollTextArea(Color) - Static method in class gov.nih.mipav.view.components.WidgetFactory
buildSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Sculpturing control panel.
buildSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the Sculpturing control panel.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the visual display in which to list all selected directories in the directory tree.
buildSelectOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
buildSendPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the host panel by calling methods to build the server and storage panels.
buildSeqGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildSequenceInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildSequencesPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildServerPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that contains the server table and four buttons.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Builds the set button.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Builds the set button.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Builds the set button.
buildSetButton(GuiBuilder, String) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildSettingsPanel(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildShearWarpCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the shearwarp render.
buildShearWarpOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the shearwarp render.
buildShearWarpToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the shearwarp toolbar.
buildShininessPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the shinness control panel.
buildShortcutTable() - Static method in class gov.nih.mipav.view.Preferences: Builds a hashtable of actioncommands (keys) with associated keystrokes from the Preferences file.
buildSimplePanel() - Method in class gov.nih.mipav.view.JPanelHistogram
buildSimpleToolBar() - Method in class gov.nih.mipav.view.ViewControlsImage: Creates the main toolbar without any of the pre-made additional bars (no VOI etc) for use with addCustomToolBar() to add custom-built bars to the main bar
buildSimpleToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram
buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the slices control panel for the surface render.
buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the slices control panel for the surface render.
buildSlicePickPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Build the slice pickable panel
buildSlider(String, int, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildSlider(JPanel) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
buildSliderLabels(int) - Method in class gov.nih.mipav.view.ViewJSlider: Builds the slider labels for the slider.
buildSmartThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildSourceListingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Creates the panel holding the directory tree.
buildSourcePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourceTreeListing(boolean) - Method in class gov.nih.mipav.view.ViewImageDirectory: Creates the tree that holds the image files and returns the panel containing the tree.
buildSourceTreeListing(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the panel holding the directory tree.
buildSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildSPGRPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildSpyr(Vector<double[][]>, Vector<int[]>, Vector<int[]>, Vector<double[][]>, double[][], int, String, int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
buildSpyrLevs(Vector<double[][]>, Vector<int[]>, double[][], int, double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
buildSquarePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildStartButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Builds the cancel button.
buildStartLocationsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panels which is edited in the tabbed pane "Dataset Origin".
buildStaticPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
buildStatusPanel() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Panel that builds the status display panel.
buildStopButton() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Builds the Stop button.
buildStoragePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that contains the storage table and four buttons.
buildSubsamplePanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildSurfaceBoxPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the options panel.
buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the adding surface control panel for the surface render.
buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the adding surface control panel for the surface render.
buildSurfaceTexturePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the Surface texture panel.
buildSurfaceViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The the top one volume view toolbar.
buildSurRenderToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the surface render toolbar.
buildSVMoptionsPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildT2LoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildTabbedPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
buildTable() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: Build the table to be used in the dialog (dicom or image attributes).
buildTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildTablePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTableScrollPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a JScrollPane out of tagsTable
buildTagInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTagSelectorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTagsModel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a ViewTableModel and fill in DICOM tag info
buildTagsTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a JTable out of a ViewTableModel
buildTagsTableListSelector() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build the tagsTable list selection method
buildTalairachPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the Talairach Transform scrollpane with all talairach related data.
buildTargetListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the target surface (tumor) control panel.
buildTargetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
buildTDistLUT(int, double, ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelLUT: Build LUT consisting of a student t-distribution at the specified level os significance for the given degrees of freedom.
buildTemplateList() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
buildTensorEstPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
buildTensorPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildText(int, String, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Attach some 3D text to a BranchGroup or TransformGroup.
buildTextArea(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new text area.
buildTextButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Helper method to build a text button for the toolbar.
buildTextButton(String, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to build a text button.
buildTextField(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to create a text field with the proper font and font color.
buildTextPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the panel that contains the query result table.
BuildTextureVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Samples all shapes in the training set and build the corresponding texture vectores.
BuildTextureVectorsFromImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Transform image to texture vector
buildThreshold(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the txt-box that allows user to insert the bottom-end pixels to skip.
buildThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Builds each threshold panel (red, green, and blue).
buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Builds each threshold panel (red, green, and blue).
buildTImageSliderLabels(int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the slider labels for the time slider.
buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds the time (4D) slider.
buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds the time (4D) slider.
buildTinvTable() - Static method in class gov.nih.mipav.model.algorithms.StatisticsTable: Builds the t-statistic table, first numerical row is list of significant values, subsequent rows are the t-statistic values for incremental degrees of freedom.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.MipavUtil: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the titled border for the panel.
buildTitledBorder(String, Color) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String, Border) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds a titled border with the given title, an etched border, and the proper font and color.
buildToggleButton(CustomUIBuilder.UIParams, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, int, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, String, String, String, ButtonGroup, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a toggle button for the toolbar.
buildToggleButton(String, String, String, String, ButtonGroup, JToolBar, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a toggle button for the toolbar.
buildToggleButton(String, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToolbar() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Build the toolbar, for now, only one save button.
buildToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds a simple toolbar for this frame (ViewJFrameLightBox).
buildToolbar() - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a toolbar with the same functionality as the menu.
buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Builds a toolbar with the same functionality as the menu.
buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds a simple toolbar for this frame (ViewJFrameLightBox).
buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage: Builds the toolbars.
buildToolBar() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Build the toolbar control.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Builds the toolbar for the mouse recorder.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Build the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Builds the toolbar for the mouse recorder.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Builds the toolbar for the volume render frame.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Builds the toolbar for the volume render frame.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the probe toolbar control.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Build the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Builds the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Builds the needed toolbar.
buildToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the toolbars.
buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: builds the second registration toolbar.
buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: builds the second registration toolbar.
buildToolbarBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new border of the type used by toolbars.
buildToolbarMenu(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
buildToolBarPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build the toolbar with various buttons to help in the editing of DICOM tags
buildToolbars() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Builds the toolbars for the tri-planar view.
buildToolbars() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the toolbars for the tri-planar view.
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buildTrainGroupPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildTransformStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
buildTransformTypePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildTreatmentPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
buildTreeDialog() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildTreT1HIFISpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1HIFISpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1LongPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1LongPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1SpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1SpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTriImage(ModelImage, ModelLUT, ModelRGB, ModelImage, ModelLUT, ModelRGB, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method creates an image from the two ModelImage objects and ModelLUT objects passed as parameters.
buildTSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the time (4th dimension) slider.
buildTSliderLabels(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds labels used by the time slider.
buildUndoTableModel(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildUnsharpPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildUserInterface() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildVasculatureBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the vasculature ( blue sphere ) branch group image scene graph.
buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the view control panel.
buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the surface render.
buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The the top one volume view toolbar.
buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The the top one volume view toolbar.
buildVisuzalizationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildVOIContourPane() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
buildVolumePositionPanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the volume position panel, which is the panel that sits in the plug-in area of the 2x2 tri-planar layout.
buildVolumeTriPlanarVOIToolBar(int, int, boolean, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the VOI toolbar, with buttons for creating various types of VOIs (elliptical, square, etc.), and for cut and paste operations.
BuildWarpTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Cache method, that caches triangle info.
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
buildWaveletPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWindowLevelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the slider Panel.
buildWindowSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the window slider and places it in the slider panel.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Builds 4x4 transformation matrix from R and T T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Builds 4x4 transformation matrix from R and T T=p2-R*p1.
buildXLATdestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the destination panel which consists of the directory textline, the browse button for the translation key file.
bundle - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
BUNDLE_HEAD - gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
bundle_state() - Constructor for enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
BUNDLE_TAIL - gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
BundledPlugInInfo - Interface in gov.nih.mipav.plugins: This interface binds a PlugIn to a PlugInBundle.
BUNIT - Variable in class gov.nih.mipav.model.file.FileInfoFits
bup(double, double, double, double, int, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
BurnAttributes - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Class that holds the information about each surface; the BranchGroup which holds the surface subtree, the name of the surface in the dialog, the color of the surface, the shininess of the surface, the level of detail (for clod meshes), the number of triangles (changes with level of detail), the polygon mode (fill, line, or point), and a flag indicating if this is a clod mesh.
BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Constructs new attributes structure to hold information needed for displaying each burn.
BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float, Point3f, boolean, boolean, boolean, BitSet, Point3f, Vector3f, Transform3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Constructs new attributes structure to hold information needed for displaying each surface.
burnBackFaceCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point back face culling check box.
burnBase - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burn base reference.
BurnBase - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: BurnBase
BurnBase(SurfaceRender, JPanelProbe) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Constructor.
BurnBaseView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnBaseView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Constructor.
BurnBaseView.Edge - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: A representation of an edge for the vertex-edge-triangle table.
BurnBaseView.UnorderedSetInt - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: DOCUMENT ME!
burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn subtree, holds all the Shape3D objects that make up the surface.
burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the probe burning geometry shape.
burnClipCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point clipping check box.
burnColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning point surface color.
BurnCoolTipView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnCoolTipView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView: Constructor.
BurnHeatView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnHeatView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView: Constructor.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Current burning point index.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Current burning point index.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Current burning point index being hightlighted.
burningBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning point branch group array, used to switch between different buring point.
burningPtTransVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point coordinate vector in world coordinate system.
burningTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burning time.
burnList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burn list that hold the burning point names.
burnMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: BitSet burning sphere or ellposoid mask.
burnPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Burn center coordinate.
BurnRegularView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnRegularView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView: Constructor.
burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: The root branch group of the burning point.
burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The root branch group the default burning point.
burns - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: List of burn attributes.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Burning type flag, default to the default burning point type.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning type.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning type, default, regular, heat, etc.
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
butterworthOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Button reference.
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
button_change_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_change_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_clear_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_clear_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_load_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_load_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_run_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_run_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_save_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_save_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
BUTTON0 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
BUTTON1 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
buttonArray - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
buttonAxial - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonCoronal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Choose button for each VOI and ply file.
buttonDilate - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonEnergyInput - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
buttonErode - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonExportToMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonExportToVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonFile - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
buttonFillBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonFillBackgrounds - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
buttonGrid - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Array of toggle buttons used to create the grid
buttonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonGroup - Variable in class gov.nih.mipav.view.ViewMenuBuilder
buttonGrowRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonImportFromMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonImportFromVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonInputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
buttonInputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
buttonMatchFile - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buttonMpFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
buttonnormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
buttonOutputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
buttonOutputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
buttonOutputFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogText: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Button panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Button Panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Button Panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Button panel to hold the OK button, Cancel button, and Help button.
buttonPly - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonPly - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Choose button for each VOI and ply file.
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
buttonPress - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
buttonRevert - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonRmObject - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonRmObjects - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonSagittal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonsIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
buttonSize - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Make sure the button size is always this dimension
buttonSVMModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonTextArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: this is the array list of texts for the mask number buttons.
buttonTimesFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buttonVOIFile2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
bVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
bvalGradAppButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
bvalGradFileLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
bValue - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bValueArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
bValueIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
bValuePos - Variable in class gov.nih.mipav.model.file.FilePARREC: bFactorIndex
bvalues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
bValues - Variable in class gov.nih.mipav.model.file.DTIParameters
bValues - Variable in class gov.nih.mipav.model.file.FileBRUKER
bValues - Variable in class gov.nih.mipav.model.file.FileImageXML
bValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
bValuesArrayList - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this is an array of b-values that for each volume
BValuesPerDirection - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
bValueTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
bw - Variable in class gov.nih.mipav.model.file.FileXML: Buffered writer for writing to XML file
bW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
bwAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
bwImageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
bwlabel4(int[][]) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
bwSegmentedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
bwSegmentedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
bx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
by - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
by2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
by4Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
by8Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
byArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
byContour - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI contour.
byContour - Variable in class gov.nih.mipav.view.JPanelStatisticsList: true if by contour or by slice and contour and show Totals is not selected
byContourSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI contour.
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI slice.
BYTE - gov.nih.mipav.model.file.FileSVS.Type: 8 bit unsigned
BYTE - gov.nih.mipav.model.file.FileTiff.Type: 8 bit unsigned
BYTE - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type signed byte (8 bits per voxel).
BYTE - Static variable in class gov.nih.mipav.model.file.FileLSM: TIFF Types.
BYTE - Static variable in class gov.nih.mipav.model.file.FileSTK: TIFF Types.
BYTE - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type signed byte (8 bits per voxel).
byte_order - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
BYTE_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: A string with VR "OB" is stored in the tag's value.
BYTE_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type byte.
byte2D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte2DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte3D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte3DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byteArray1 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: One byte array allocated once to speed process and reduced the need to reallocate memory.
byteArray2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Two byte array allocated once to speed process and reduced the need to reallocate memory.
byteArray4 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Four byte array allocated once to speed process and reduced the need to reallocate memory.
ByteArrayReader(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
ByteArrayReader(byte[], int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
ByteArrayReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteArrayReaderTest
byteBuffer - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileDicomBase: One byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ByteBuffer(int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Allocates the byte buffer of the given size.
byteBuffer2 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Two byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
byteBuffer4 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Four byte array used to read/write in data so that one doesn't need to be allocated with each read/write.
byteBuffer8 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Eight byte array used to read/write in data so that they don't need to be allocated with each read/write.
ByteConvert() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteConvert
ByteConvertTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteConvertTest
byteCount - Variable in class gov.nih.mipav.model.file.FileLSM.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileSTK.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileSVS.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileTiff.Index: DOCUMENT ME!
byteDoubleBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for double *
byteDoubleBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for double *
byteFloatBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: byte array for float *
byteFloatBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for float *
byteFormat - Variable in class gov.nih.mipav.model.file.FileBioRad: if 1 data is UBYTE, otherwise data is SHORT.
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for int *
byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for long *
byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for long *
byteLongBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for long *
byteOrder - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
bytePointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
bytes_read - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
byteShortBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for short *
byteShortBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for short *
bytesOut - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Number of bytes per pixel.
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
bytesPerPixelIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
bytesPerRow - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
bytesPerValue - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
bytesToDouble(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to double
bytesToFloat(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to float
bytesToInt(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to int
bytesToShort(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to short
bytesV - Variable in class gov.nih.mipav.model.file.FileDicom
ByteTrie() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie
ByteTrieNode() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode
ByteTrieTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteTrieTest
ByteUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
ByteUtilTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest
byteValue - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
byteValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as a byte.
byTotalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by total VOI.
bz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
bz2in - Variable in class gov.nih.mipav.model.file.FileNIFTI
BZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BZip2Constants - Interface in gov.nih.mipav.model.file: Base class for both the compress and decompress classes.

C

c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
c - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
c - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
c - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
c - Variable in class gov.nih.mipav.model.algorithms.curev
c - Variable in class gov.nih.mipav.model.algorithms.curfit
c - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
c - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input argument
c - Variable in class gov.nih.mipav.model.algorithms.Integration2: Parameter in the weight function, c !
c - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Parameter in the weight function, c !
c - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
c - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
c - Variable in class gov.nih.mipav.model.algorithms.splev
c - Variable in class gov.nih.mipav.model.algorithms.sproot
c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: temporary buffer where bits are coded or decoded
c - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
c - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The index of the component from where to get the data
c - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
c - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: model parameters.
c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
C - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
C - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
C - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < transition matrix
C - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
C() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: Returns the corresponding model parameters.
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
c_a(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
C_AAMBUILDER - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
C_AAMBUILDER() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMBUILDER
C_AAMMODEL - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
C_AAMMODEL() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMMODEL
c_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
C_MAX_BLOCKS_IN_MCU - Static variable in class gov.nih.mipav.model.file.libjpeg
c_next(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
c_prev(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
c_s(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
C_SVC - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
C_SVC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
c0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
C0 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: coefficents for DAUB4 wavelet filter.
C0_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c0max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c0min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE: Reference: Adaptive and integrated neighborhood-dependent approach for nonlinear enhancement of color images by Li Tao and Vijayan K.
c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c1 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
C1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C1 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: private double BIG = 3.0E137; // 3.0E37.
C1 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C1_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c12 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C1CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C1d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c1Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
c1max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c1min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c2 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
C2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
C2 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C2 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C2_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c20 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C2CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C2d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c2max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c2y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c2z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
c3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c3 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
C3 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C3d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c3Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
c3x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c4 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: coefficients for the PWT filter.
C4 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C4 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C4Q - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4Q - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4R - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4R - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
c5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
C5d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C6d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
ca - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
ca_bckpbCrt - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_ckpntData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_firstCVodeBcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_firstCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMfree - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMget - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMinterpSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMmalloc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMmallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMnewData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMstore - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMstoreSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMtype - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nbckpbs - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nckpnts - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_np - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nsteps - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_T - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tfinal - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tinitial - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tstopCVodeF - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tstopCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_Y - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_YS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_yStmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_ytmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
CAAMAnalyzeSynthesize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMAnalyzeSynthesize(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Constructor
CAAMAnalyzeSynthesizeSoftware - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMAnalyzeSynthesizeSoftware(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Constructor
CAAMAnalyzeSynthesizeSoftware.sWarpEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
CAAMBuilder - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMBuilder() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Constructor.
CAAMConsole - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsole(int, String[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Console interface to pass the augments to varies modes
CAAMConsoleMode - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleMode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: constructor
CAAMConsoleMode(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: Constructor
CAAMConsoleModeB - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeB() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Constructor
CAAMConsoleModeB(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Constructor
CAAMConsoleModeCM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeCM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeCM: Constructor
CAAMConsoleModeD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeD(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeD: Constructor, Debug/Test console mode, not used.
CAAMConsoleModeE - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeE() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Constructor.
CAAMConsoleModeE(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Constructor.
CAAMConsoleModeLOO - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeLOO(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeLOO: Constructor
CAAMConsoleModeM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeM: Constructor.
CAAMConsoleModeP - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeP(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeP: Constructor
CAAMConsoleModeR - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeR(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeR: Constructor.
CAAMConsoleModeREG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeREG(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeREG: Constructor.
CAAMConsoleModeS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeS(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeS: Constructor.
CAAMConsoleModeSM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeSM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeSM: Constructor.
CAAMConsoleModeT - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeT(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeT: Constructor.
CAAMConsoleModeU - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeU(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeU: Constructor.
CAAMConsoleModeW - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeW(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeW: Constructor.
CAAMDeform - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDeform() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
CAAMDeformPCA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDeformPCA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
CAAMDelaunay - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDelaunay() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDelaunay: constructor
CAAMEvalRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMEvalRes(CAAMShape, CAAMShape, double, CAAMOptRes) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: Constructor Compute the evaluation optimization results.
CAAMEvaluationResults - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMEvaluationResults() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults
CAAMInitCandidates(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: Allocates a pool with room for 'n' candidates.
CAAMInitEntry(double, CAAMShape, CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: Constructor
CAAMInitialize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMInitialize() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: Constructor.
CAAMInitialize(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: Copy constructor.
CAAMInitializeStegmann - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMInitializeStegmann(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Constructor.
CAAMInitializeStegmann(CAAMModel, ModelImage, ModelImage, CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: AAM initialization from given aam model, target imge, and sample image and VOI
CAAMInitializeStegmann.CAAMInitCandidates - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Initialization candidate containiner.
CAAMInitializeStegmann.CAAMInitEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Container for initialization results.
CAAMLinearReg - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMLinearReg() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: constructor
CAAMLowerBounds - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMLowerBounds() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Constructor.
CAAMLowerBounds(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Constructor
CAAMMathUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMMathUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil
CAAMMesh - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMMesh() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Constructor.
CAAMMesh(CAAMMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Copy constructor.
CAAMModel - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Constructor.
CAAMModel(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Copy constructor.
CAAMModelMS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModelMS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Default multi-scale constructor.
CAAMModelSeq - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModelSeq() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Default multi-scale constructor.
CAAMObject - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMObject() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMObject
CAAMOptimize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptimize(CAAMModel, CAAMShape, ModelSimpleImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: Constructor for the AAM optimizer.
CAAMOptRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptRes() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Constructor
CAAMOptRes(double, int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Constructor
CAAMOptState - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Constructor
CAAMOptState(double, CAAMShape, CDVector, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Constructor
CAAMPoint - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPoint() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Constructor
CAAMPoint(double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Constructor
CAAMPointInfo - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPointInfo() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Constructor
CAAMPointInfo(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Constructor
CAAMPropsReader - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPropsReader(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Constructor.
CAAMReferenceFrame - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMReferenceFrame() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Constructor.
CAAMReferenceFrame(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Copy constructor.
CAAMReferenceFrame.sScanLinePart - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: defines a sub-part of a horizontal line in an image
CAAMShape - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMShape() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Default constructor.
CAAMShape(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Constructs a shape with 'nbPoints' points.
CAAMShape(CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Copy contructor.
CAAMShape(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Constructs a shape from a vector.
CAAMShapeCollection - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMShapeCollection() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Constructor.
CAAMTest - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Constructor.
CAAMTFIdentity - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFIdentity() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity: Constructor
CAAMTFLookUp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFLookUp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Constructor.
CAAMTFUniformStretch - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFUniformStretch() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Constructor.
CAAMTransferFunction - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTransferFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: Contructor
CAAMTriangle - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTriangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Constructor
CAAMTriangle(int, int, int, Vector<CAAMPoint>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Constructor
CAAMUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
CAAMVisualizer - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMVisualizer(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Constructor.
CAAMWarp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMWarp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Constructor
CAAMWarpLinear - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMWarpLinear(boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: Constructor.
cache - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
Cache - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm: Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.
Cache(int, long) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Cache
Cache(int, long) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
cache_detMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: Kalman gain matrices [n x m x tau].
cache_dt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: inverse covariance matrix [m x m x tau].
cache_invMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: determinant term [1 x tau].
cache_Kt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
cache_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
cache_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
CACHE_SIZE - Variable in class gov.nih.mipav.model.algorithms.Fastfit
Cache.head_t - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
CACHED_MAX_DEBUG_LINES - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify the maximum number of lines in the debugging panel.
cachedClass - Variable in class gov.nih.mipav.plugins.JarClassLoader
cachedTab - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Cached value of selected tab
cacheRaster(WritableRaster) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
cadvise() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
caField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Range of calibration values.
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The cal_min and cal_max fields (if nonzero) are used for mapping (possibly scaled) dataset values to display colors: - Minimum display intensity (black) corresponds to dataset value cal_min. - Maximum display intensity (white) corresponds to dataset value cal_max. - Dataset values below cal_min should display as black also, and values above cal_max as white. - Colors "black" and "white", of course, may refer to any scalar display scheme (e.g., a color lookup table specified via aux_file). - cal_min and cal_max only make sense when applied to scalar-valued datasets (i.e., dim[0] < 5 or dim[5] = 1).
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Range of calibration values.
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
cal_units - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Specifies the name of the calibration unit.
cal_units - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Prepares the data and runs the algorithm for a 2D or 3D image.
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Find the midsagittal line and transform the source image to align it along that line vertically.
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Prepares the data and runs the algorithm for a 2D or 3D image.
calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Starts the Gaussian calculation.
calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Starts the Gaussian calculation.
calc(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Performs a AlgorithmImageCalculator calculation on the two input images.
calc_binomials(int, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_binomials(int, int, DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_clustering_acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
Calc_dD() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Cache function.
calc_entropy(int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_nls_nmf(Matrix, Matrix, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_nmi(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_powers(double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_powers(QuarticEquation.complex_t, int, QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_powers(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_powers(DoubleDouble, int, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_purity(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_shifted_coefs(double, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_shifted_coefs(QuarticEquation.complex_t, int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_shifted_coefs(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_shifted_coefs(DoubleDouble, int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_symmetry - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 3D image.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 3D image on a slice by slice basis.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc25D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc25D - calculates the diffused image and creates the new VOI for the original image.
calc25D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: calc2D - calculates the diffused image and creates the new VOI for the original image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc2D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc2D - calculates the diffused image and creates the new VOI for the original image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Calculates the watershed intialized by the VOI regions.
calc2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
calc2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
calc2DBWStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calc2DColorStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calc34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
Calc34D(VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
calc35D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: calc3D - calculates the diffused image and creates the new VOI for the original image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc3D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc3D - calculates the diffused image and creates the new VOI for the original image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Calculates the watershed intialized by the VOI regions.
calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
calcAsymmetryIndex(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
calcAvgIntenStdDev() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: computes the avg intensity got 2d and 3d greyscale and color images
calcAxisOrientation(int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Calculate the new image AxisOrientation, based on re-ordering the axes using axisOrder and axisFlip.
calcBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelLUT: Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
calcButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Performs statistics calculations
calcButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Calculat button.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorAStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorBStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
CalcConvexHull() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Calculates the convex hull of each path in the shape.
calcCropped() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
calcDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
calcEigenVectorFA() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Calculates the eigen vector data from the DTI.
calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.
calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Calls AlgorithmDTI2EGFA to create eigen vector and functional anisotropy images.
CalcElementVar(Vector<CDVector>, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Wrapper to calculate element variables.
CalcElementVar(Vector<CDVector>, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Calculates the variance of each component in a set of vectors.
calcEntropy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcEntropy(ModelSimpleImage, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcError(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcError(TransMatrixd) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcFFT(float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
calcFFT25D(float[][], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
calcGradMag() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
calcGroup - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: The top-level group of threads used for calculating.
calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Calculate GVF from image buffer.
calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Calculate GVF from image buffer.
calcGVF3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Calculate GVF from 3D image buffer.
calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Calculate GVF from 3D image buffer.
calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Calculate GVF from 3D image buffer.
calcHistogram() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
calcHistogram(int, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates histogram for the image(s).
calcHistogram(ModelImage, boolean, int) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates histogram for the image(s).
calcHistogram(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(ModelImage, int, int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Calculates histogram for the imageA, B.
calcHistogramGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calculates the histogram for the color images GM.
calcHistograms() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Calculates histogram for the imageA, B.
calcHistogramsGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Calculates histogram for the gradient magnitude imageA, B.
calcImageNormals() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Create array of normal vectors corresponding to the voxels in the volume.
calcImagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the individual image panel size based on the current magnification of the image.
calcImagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the individual image panel size based on the current magnification of the image.
calcInBuffer2D(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the laplacian medianess of a 2D image and returns it as a float buffer.
calcInBuffer2D(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
calcInBuffer2DUnnormalized(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Histogram matching of the source image to the base image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Histogram equalizing of slices to reference slice.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Calculates the VOI extraction.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Calculates the VOI extraction.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: Filters the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Filters the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Calculates the dicom ordered image and replaces the original image with the dicom ordered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Runs the calculation and stores the result into the same source buffer.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Forms the reversed order image and places the result in original image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates the final output and stores it in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Calculates the rotated image and replaces the source image with the rotated image.
calcInPlace(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Generates the flipped image and replaces the source image with the flippeded image.
calcInPlace2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: From text description in 4th edition Image Processing, Analysis, and Machine Vision International Edition by Milan Sonka, Vaclav Hlavac, and Roger Boyle, Algorithm 6.6 Inner Boundary Tracing, pp. 191-192.
calcInPlace25D(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25D(BitSet, float, int, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25DC(BitSet, Color, int, String, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the color source image with fill color.
calcInPlace25DCMask(BitSet, Color, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the color source image with fill color.
calcInPlace25DMask(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25DMask(BitSet, float, int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Histogram equalization on the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Histogram equalization on the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Calculate center of mass of 2D black and white image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Calculate red, green, and blue centers of mass for 2D color image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Replace 2D source image with the thresholded image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Replace 2D source image with the thresholded image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Mean filters the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function replaces the source image with the new type image and new data range.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function replaces the 2D source image with an image that has noise added to it.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the gradient image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and replaces the source image with the diffused image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Calculates the Morphological Filter image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Calculates the non-maximum suppression image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: calculates the blurred image and replaces the source image with the blurred image.
calcInPlace2DBuffer(int, float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace2DBuffer(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and returns a float buffer with the new values.
calcInPlace2DBufferUnnormalized(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and returns a float buffer with the new values.
calcInPlace2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Replace 3D or 4D source image with the thresholded image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Replace 3D or 4D source image with the thresholded image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude image and replaces the source image with the new image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function replaces the source image with the new type image and new data range.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function replaces the 3D or 4D source image with an image that has noise added to it.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Histogram Equalization on the source image and replaces the source image with the processed image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Histogram Equalization on the source image and replaces the source image with the processed image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Calculate center of mass of 3D black and white image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Calculates red, green, and blue centers of mass in 3D color image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and replaces the source image with the diffused image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Calculates the Laplacian and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Mean filters the source image and replaces the source image with the mean filtered image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image and replaces the source image with the median filtered image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Calculates the Morphological Filter and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Calculates the non-maximum suppression and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: calculates the UnsharpMask and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace3DBuffer(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Replaces the original image with the Median filtered image.
calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 2D source image.
calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Mode filters the source image and replaces the source image with the mode filtered image.
calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 3D source image and replaces it with the mode filtered image.
calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in the source image.
calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
calcInPlaceComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in the source image.
calcIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculated the total intensity contained within this contour.
calcIntensity(ModelImage, Vector3f, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds values contained within this contour, based on the rangeFlag, ignorMin and ignoreMax.
calcIntensityThreshold(ModelImage, float, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour, equal to of greater than the threshold.
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
calcjTest(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcLargestDistance(BitSet, int[], float[]) - Method in class gov.nih.mipav.model.structures.VOI: Calculate the distance of the largest line segment contained entirely within the VOI
calcLargestDistance(BitSet, int[], float, float, float, float[], float[], float[], Vector3f, Vector3f) - Static method in class gov.nih.mipav.model.structures.VOI
calcLargestSliceDistance(int[], float[], Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.VOIContour: Calculate the distance of the largest line segment contained entirely within the slice of the VOI
calcLevelSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcLineMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcLineMinimization() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcLowerResol() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method calculates the lower X, lower Y, and lower Z coordinates(millimeters) for the CROP VOI region.
calcLSBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
CalcMaskImage(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Calculates a reference mask image.
CalcMaxAperture(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
calcMaxNormColors(ModelImage, int) - Method in class gov.nih.mipav.view.PatientSlice: calculates the color normalization factors.
calcMaxNormColors(ModelImage, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: calculates the color normalization factors
calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Calculate the maximum and minimum valuse to setup the window and level sliders.
calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the maximum and minimum valuse to setup the window and level sliders.
calcMinMax(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
calcMinMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the image range bounds for transfer function determination.
CalcMinMaxEdgeLength(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
calcMinMaxMag(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max magnitude values for the image array.
calcMinMaxNonZero() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max nonzero values for the image array.
calcMinMaxSlice(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Calculates the min and max values for the image array, so that the image is displayed properly.
calcMinMaxSlope(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcMIPBuffer(int, int, int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Generates a MIP image from the volume.
calcMSE() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
calcNormals() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: Calculates the volume normals from the input source ModelImage.
CalcNParam(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Calulates the needed number of parameters to retain 'retained_variance'.
calcNumPages() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the number of pages.
calcObjX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the world X coordinates from input MouseEvent coordinates.
calcObjY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the world Y coordinates from input MouseEvent coordinates.
calcOriginalMarker(int) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
calcPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the size of the page Panel.
calcPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the size of the page Panel.
calcPaintedVolume(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Calculates the volume of the painted voxels.
CalcPixel2ShapeWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Calculates the pixel-to-shape weights used in the combined PCA.
calcQuadSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Calculates quad surface.
calcQuadSurface(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Calculates quad surface.
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel: Fit to function - a1 + (1 - a1)*[1 - 1/sqrt(1 + 4*PI*a0*x)].
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel: Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
calcRBSpline(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslice data is Cubic Bspline where.
calcRCUBIC(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslice using cubic convolution reslice where.
calcRGBBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelRGB: Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
calcRGBIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour for the input color channel.
calcRGBIntensity(ModelImage, ColorRGB, ColorRGB, ColorRGB, float, float, float, float, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds values contained within this contour, based on the rangeFlag, ignoreMinR, ignoreMaxR, ignoreMinG, ignoreMaxG, ignoreMinB, and ignoreMaxB.
calcRGBIntensityThreshold(ModelImage, int, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour for the input color channel, that is greater than or equal to the input threshold value.
calcrTest(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcSalScale1D(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale1DAA(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale1DParzen(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale2D(short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale3D(short[], short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
CalcScanLines() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Calculates the scanlines of the mask image.
calcScreenSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the screen size in pixels.
calcScreenSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the screen size in pixels.
calcScreenX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the screen X coordinates from input world coordinates.
calcScreenY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the screen Y coordinates from input world coordinates.
calcSelectedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: The VOI being used just for this calculation (may be a single curve of a single slice or entire VOI
CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Calculates optimization results.
CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates optimization results.
calcShearWarpImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Transform the image into shear warp image, which has the same resolution.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType: Calculates the PDU item type size.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUType: Calculates the size of this PDU type.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: These methods must be implemented by each class that extends this class.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: Calculates the PDU item type size.
calcSlopeAndB() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
calcStartLocations(float[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates the new start locations based on image orientation.
calcStats - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
calcStatsPerContour(FileInfoBase, VOIBase, int, String, String, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates statistics for a single contour.
calcStatsPerContourRGB(FileInfoBase, VOIBase, int, String, String, float, float, float, float, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates statistics for a single contour.
calcStatsTotal(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the statistics for the VOI as a whole (across all contours within the VOI).
calcStatsTotalRGB(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: This function produces a new image that has had itself histogram matched to the base image. places filtered image in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: This function produces a new image that has had all slices histogram equalized to reference slice. places filtered image in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in a new (destination) image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: This function produces a color edged image into a ModelImage that does not replace the original image-data.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: This function produces a new image that has had edge extraction by FIRE operators
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: This function produces a new image that has had fuzzy minimization filtering
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: This function produces a new image that has had fuzzy minimization filtering
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: This function produces a local-normalized image into a ModelImage that does not replace the original image-data.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: This function produces a new image that has had rule based contrast enhancement
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Adds image margins and stores result in destImage.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Concatenate the image and store the results in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Calculates the gray scale image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: DOCUMENT ME!
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Runs the calculation and stores it in a new ModelImage.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in a new (destination) image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates the final output and puts it in a destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Replace the values and store into a new image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Concatenate the image and store the results in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Calculates the gray scale image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Calculates the new images.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Calculates the new images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Stores the thresholded image into the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Stores the thresholded image into the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: This function produces a new image that has been mean filtered and places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This function produces a new image that has been median filtered and places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function produces a new image with the new data type and new data range.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped!
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function produces a new 2D image that is the sum of the source image and noise.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: This function produces the Laplacian of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and stores the resultant diffused image in the destination image model.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: This function produces a new image that has been blurred.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: This function produces the gradient magnitude of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: This function produces the Laplacian of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: This function produces the Morphological Filter of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: This function produces the non-maximum suppression of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: this function produces a new image that has been blurred.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: This function produces the EdgeLap of input image.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: This function produces the EdgeLap of input image.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: This function produces the EdgeNMSup of input image.
calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Stores the thresholded image into the destination image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Stores the thresholded image into the destination image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: This function produces the gradient magnitude of input image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function produces a new image with the new data type and new data range.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function produces a new 3D or 4D image that is the sum of the source image and noise.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: This function produces a new volume image that has been histogram equalized.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: This function produces a new volume image that has been histogram equalized.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: This function produces the Laplacian of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and stores the resultant diffused image in the destination image model.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Produces a new image that has been blurred.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: This function produces the Laplacian of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: This function produces a new volume image that has been mean filtered.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This function produces a new volume image that has been median filtered.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: This function produces the Morphological Filter of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: This function produces the Non-maximum suppression of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: this function produces the UnsharpMask of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: This function produces the Laplacian of input image.
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: This function produces the EdgeLap of input image.
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: This function produces the Non-maximum suppression of input image.
calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Produces a new image that has been blurred.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This method produces a new image that has been mode filtered and places filtered image in the destination image.
calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: This function produces a new image that has been mode filtered and places filtered image in the destination image.
calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image and replaces the source image with the mode filtered image.
calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 3D source image and makes a new image for the mode filtered image.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in a new (destination) image.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
calcStoreInDestComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in a new (destination) image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Edge extraction by FIRE operators of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Fuzzy minimization filtering of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Fuzzy minimization filtering of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Rule based contrast enhancement of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Adds image margins and stores result in srcImage Must use getSrcImage after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Concatenate the image Must run getImageR after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Calculates the gray scale image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Replace the values in place.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Concatenate the image Must run getImageR after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Calculates the gray scale image.
calcStoreInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcStoreInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcStoreInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcTCoordX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the X Texture Coordinates from world coordinates.
calcTCoordY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the Y Texture Coordinates from world coordinates.
calcTensor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
calcTensor(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
calcThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the thresholded image based on the parameters of the threshold transfer function.
calcThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the thresholded image based on the parameters of the threshold transfer function.
calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
calcThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
calcTotalVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Calculate the burning points total volume.
calcTracts(VOIBaseVector[], int, int, int, int, int, int, int, ModelImage, ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
calcTriSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Calculates triangulated surface.
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: DOCUMENT ME!
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: DOCUMENT ME!
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: DOCUMENT ME!
calculate(libdt.CovMatrix, libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
calculate2PResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateB0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateBestToWorst(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateBin(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
calculateBin(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
calculateBoundingBox() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
calculateBoundingBox(ModelImage, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
calculateCenterOfMass2D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the center of mass (gravity) of a 2D image using the intensity of each pixel as a weighting value.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass3D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitExponential
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLine
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Calculates chi squared
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: From the cropped images, apply Coherence Enhanced Diffusion filter to each 2D slices.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Calculate the CED image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Apply the coherence enhancing diffusion filter to the croppred MR image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Apply the coherence enhancing diffusion filter to the croppred MR image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
calculateConformal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
calculateConformal() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
calculateConvergenceMeasurement(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
calculateCustomDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
calculateCustomRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Calculates the range and domain (according to min and max y values). and expands range if necessary.
calculateDefaultRangeDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Calculates the default range and domain (according to min and max x and y values).
calculateDerivativeImage(float[], int[], boolean, float[][], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateDTI(int, int, float[], float[][][], Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateDTIVoxel(float[], float[][], float[][][], int, int, int, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateDTIVoxel2(float[], float[][], float[][][], int, int, int, Matrix, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitExponential
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLine
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Calculates yDataFitted
calculateFreeRangeThreshold(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calculateFuzzyCMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate Gabor filter.
calculateGaborFilter() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: generate the gaussian filter.
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: generate the gradient magnitude image.
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: DOCUMENT ME!
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Genernate Haralick images.
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate hurst index image.
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateImageSize(int[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Calculate the size of the image.
calculateIntercept(double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Calculates rescale intercept given a min and a slope value.
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the invert image.
calculateLaws() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: DOCUMENT ME!
calculateM0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateMatrix(Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateMaxAndMinVals() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate mean image.
calculateMedian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the median image.
calculateMinMaxValues(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateNewOrigin(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Calculates the origin values for the modified image, based on the current origin values and the added margins.
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Calculate number of features being saved.
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
calculateOutput() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
calculatePixelHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: DOCUMENT ME!
calculatePrincipleAxis(ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Working ...
calculateProgressRatios(int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Calculates the progress ratios for different algorithms.
calculateProgressValueBoundary(int, float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Calculates the boundary of progress value which is assigned to the indexth algorithm.
calculateRadii() - Method in class gov.nih.mipav.view.ColorWheel: calculates radii of the interior circles using Lambertian equal areas equation used: r = 2 |sin(theta/2)|
calculateREG(byte[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateRelativeTime(double) - Method in class gov.nih.mipav.model.file.FileZVI
calculateRescaleIntercept(double[], double[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc: In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
calculateRescaleIntercept(double[], double[], double[], double[], double[], boolean) - Static method in class gov.nih.mipav.model.file.FileInfoMincHDF: In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: CalculateResiduals.
calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: CalculateResiduals.
calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calculates the residuals of the least squares fit.
calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calculates the residuals of the least squares fit.
calculateResiduals(double[], double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateSliceHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
calculateSliceTamuraTexture() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
calculateSlope(double, double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Calculates rescale slope given a min and a max value.
CalculateT(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
calculateT1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateT1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1: The list of possible maps that can be calculated
CalculateT1(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1
calculateT1UsingConventionalTreT1() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
CalculateT1UsingConventionalTreT1Inner(ModelImage, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner
calculateT1UsingTreT1HIFI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateT2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateT2with0Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2with180Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2withApproximateModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2withFullModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateTagOffset(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader: Determine the offset of a given tag within the specified IFD.
calculateThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
calculateThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
calculateThreshold(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
calculateThreshold(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
calculateThreshold(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Extract the theshold from grount truth label.
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
calculateThreshold(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT: Performs smart thresholding for the given image at at certain slice k
calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
calculateTimeInSeconds() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
calculateTimeStampString(long) - Method in class gov.nih.mipav.model.file.FileZVI
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
calculateTransform(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
calculateTransform(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
calculateTwoPResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateValidEndZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateValidStartZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateVOIHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Compute the VOIs binary mask based volumes.
calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Compute the VOIs binary mask based volumes.
calculateVTDateTimeString(double) - Method in class gov.nih.mipav.model.file.FileZVI
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the wavelet image
calculator - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: DOCUMENT ME!
CalculteT1UsingTreT1HIFIInner(ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner
calcVolume(ModelImage, ModelTriangleMesh[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
calcVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Calculate the current burning point volume.
calcVolumeMask(BitSet, ModelImage, Vector3f[], int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
calcVoxels() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Identify all voxels that are inside or on the mesh that represents the brain surface.
calcWindowSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcWinLevTransferFunction(ModelImage, float, float, float[], float[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the x and y components of the transfer function, given the active image and the desired window and level.
calcXProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the X Projection for color or black and white images.
calcYProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the Y Projection for color or black and white images.
calcZeroX(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
calcZProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the Z Projection for color or black and white images.
calFldStr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 388 Calibrated Field Strength (x10 uGauss).
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
CALIBRATED_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
CalibrationDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
call(Vertex, Point3, float[], Point3) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointDistanceFunctor
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Once all the necessary variables are set, call the Image Margins algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Once all the necessary variables are set, call the AGCIE algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Once all the necessary variables are set, call the local AHE algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Once all the necessary variables are set, call the AINDANE algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Construct and run the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Once all the necessary variables are set, call the Color Saturation Adjustment algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Once all the necessary variables are set, call the contrast enhancement using exposure fusion algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Once all the necessary variables are set, call the convergence field algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Call Algorithm.....calls the RGBConcat algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Call algorithm to copy appropriate images from original, and double where necessary.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: Calls the CumulativeHistogram Algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for calling the Dicom to AVI algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Resample images to power of 2.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Once all the necessary variables are set, call the Edge Preserving Smoothing algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Once all the necessary variables are set, call the Efficient Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Run the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Once all the necessary variables are set, call the Extract Surface algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: When OK button is clicked, this method is invoked.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Not used.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Once all the necessary variables are set, call AlgorithmFRETBleedThrough.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Once all the necessary variables are set, call AlgorithmFRETEfficiency.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Once all the necessary variables are set, call the Gradient Magnitude algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Once all the necessary variables are set, call the Harris corner detector algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Once all the necessary variables are set, call the HillClimbing Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Once all the necessary variables are set, call the Histogram algorithm based on whehter the image is color or not.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Once all the necessary variables are set, call the Hurst Index algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Once all the necessary variables are set, call the IAGCWD contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Once all the necessary variables are set, call the IDObjects algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Once all the necessary variables are set, call the IHN3 Correction algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Once all the necessary variables are set, call the Image Math algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Once all the necessary variables are set, call the Insert Volume algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Once all the necessary variables are set, call the Isophote Curvature algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Once all the necessary variables are set, call the Kernel Regression algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Once all the necessary variables are set, call the Laws feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Once all the necessary variables are set, call the locally linear embedding algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Once all the necessary variables are set, call the local variance algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Once all the necessary variables are set, call the Lower Completion algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Once all the necessary variables are set, call the LuminanceAdaptation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Once all the necessary variables are set, call the Markov Smooth algorithm based on whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Once all the necessary variables are set, call the Mask algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Once all the necessary variables are set, call the Match Images algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Once all the necessary variables are set, call the Sizeian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Once all the necessary variables are set, call the gray scale morphology algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Once all the necessary variables are set, call the N4 MRI Bias Field Correction algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Once all the necessary variables are set, call the NLAlgo
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: run.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Once all the necessary variables are set, call the quantify mask algorithm using the previously set file name.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: Locks the images, then runs the inverse slice order algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Once all the necessary variables are set, call the region merging via boundary melting
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Once all the necessary variables are set, call the regions from partial borders
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Calls the algorithm, assuming the variables are already set up.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Calls the algorithm using the mode.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Once all the necessary variables are set, call the RGBConcat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Starts the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Once all the necessary variables are set, call the SequentialScanning Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Once all the necessary variables are set, call the ShortestPath Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Once all the necessary variables are set, call the Split And Merge Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for calling the Subsample algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Once all the necessary variables are set, call the Swap Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Once all the necessary variables are set, call the kidney segmentation algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Once all the necessary variables are set, call the Symmetric Nearest Neighbor algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Once all the necessary variables are set, call the Tamura Texture algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Once all the necessary variables are set, call the texture segmentation algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Once all the necessary variables are set, call the tilt correction algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Once all the necessary variables are set, call the Union Find Component Labelling algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Once all the necessary variables are set, call the UnionFind Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Once all the necessary variables are set, call the VOI Props algorithm to run the statistic calculation.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Driver to do automatic feature extraction.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Method for calling various cost algorithms, should only be called after registered image is created.
callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: DOCUMENT ME!
callAlgorithm(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Single thread based segmentation, which takes up to 40 minutes.
callAlgorithm2() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithmFrequencyFilter() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithmNonInteractive(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: method is meant to be used when the algorithm needs to be performed non-interactively, hence the hardcoding of the variables.
callAlgorithmRun() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Mouse behavior callback reference.
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: DOCUMENT ME!
callback_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
CallbackReturnType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callDialog(int[], int, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO: Calls GUI dialogs based on what type of image this is and the number of dimensions.
calledAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: The called application entity name, must be 16 or less characters.
callExtractAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: call the ExractSlices algorithm, building the dest image based on the type of the src image.
callFrameDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with frame deletion.
callFrameDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with frame deletion.
callFrameToFrontButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Button for bringing frame to front
callGCbutton - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
callGCButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Button for dealing with garbage collection
callImageDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with image deletions
callImageDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with image deletions
callingAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: The calling application entity name, must be 16 or less characters.
callReg35Algorithm(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Calls the algorithm with the set-up parameters.
callRemoveAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: call the RemoveSlices algorithm, building the dest image based on the type of the src image.
calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback
calls_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
CallStatistics() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
callT2Algorithm(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Calls the algorithm with the set-up parameters.
callTalAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
callVOIAlgo(ViewVOIVector, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
calPtArr() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
camera - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
camera - Variable in class gov.nih.mipav.model.file.FileInfoZVI
camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
Camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
cameraAdapterMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraBinning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameHeight - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameImageOrientation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFramePixelDistance - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameStartLeft - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameStartTop - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameWidth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime - Variable in class gov.nih.mipav.model.file.FileZVI
cameraImageAcquisitionTime0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraLiveScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
CameraLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
cameraMake - Variable in class gov.nih.mipav.model.file.FileInfoBase
cameraMakeBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraMakeTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModel - Variable in class gov.nih.mipav.model.file.FileInfoBase
cameraModelBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModelList - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModelTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraNearPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Slider for moving the camera near-plane in/out from the eye position.
cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
cameraPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: camera rotation degree label
cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: camera rotation degree label
cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: camera rotation degree slider
cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: camera rotation degree slider
CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings
CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings
cameraShadingCorrection - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraShutterLiveEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraViewRotationDegree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
cameraXLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cameraXTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera turn parameter labels
cameraYLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cameraYTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera turn parameter labels
cameraZLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cancel - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cancel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
CANCEL - gov.nih.mipav.view.dialogs.ExitStatus: Cancel button pressed
CANCEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
CANCEL - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
cancelACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Calls the super.cancelAction.
cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Calls setVisible(false) to close the dialog.
CancelAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Resets current slice's brightness and contrast to original.
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Resets current slice's brightness and contrast to original.
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Resets current slice's brightness and contrast to original.
cancelButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBar: Cancel button, if applicable.
cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
cancelCellEditing() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
CancelColorListener() - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener
cancelFlag - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: If true then the DICOM query is cancelled.
cancelFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Flag indicating if the dialog had been cancelled or not.
cancelFlag - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Flag indicating if the dialog had been cancelled or not.
cancelFlag - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
cancelled - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Flag to indicate if the receive process should be cancelled.
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.CancelListener
cancelPendingMoves() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Cancels pending moves.
cancelPendingQuery() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Cancels pending query.
cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
cancelQ - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
cancelSorting() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
canCloseImageBAfterLoad() - Method in class gov.nih.mipav.view.ViewJFrameBase: Returns whether or not the close image B option should appear after loading.
canContainMetadata - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
canContainMetadataTypes - Static variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
Candidate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
candidate_x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
canImport(TransferHandler.TransferSupport) - Method in class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
CANNY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CANNY - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cannyAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: DOCUMENT ME!
CannyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CannyPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CANONICAL_VIEWS - gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType
CanonicalViewsClustering() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
CanonicalViewsClusteringOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions
CanonicalViewsTestComputeCanonicalViewsTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestSimilarityPenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestSizePenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestViewScoreTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonMakernoteDescriptor(MetadataExtractor.CanonMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
CanonMakernoteDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.CanonMakernoteDescriptorTest
CanonMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory
canProcessMouseClick - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
canReadImages() - Method in interface gov.nih.mipav.plugins.PlugInFile: Returns whether this plugin supports reading of images in its format.
canSetTypeAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the ambient type.
canSetTypeDirectional() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the directional type.
canSetTypeNonAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to any non-ambient type.
canSetTypePoint() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the point type.
canSetTypeSpot() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the spot type.
canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
canvas - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The Canvas3D object on which the surfaces are drawn and where the picking happens.
canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas boundary.
canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas boundary.
canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas center.
canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas center.
canWeHandleTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Determines wheather or not this transfer syntax is support by MIPAV.
canWriteImages() - Method in interface gov.nih.mipav.plugins.PlugInFile: Returns whether this plugin supports writing of images in its format.
capacity - Variable in class gov.nih.mipav.model.structures.IntVector: The initial number of elements to have space for in the vector.
capacity - Variable in class gov.nih.mipav.model.structures.TransferFunction: The total capacity of the 2D point array.
caps - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
capScreenHeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
capScreenWidth - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
captureFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Camera snapshot frame.
captureImage - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The resulting ModelImage of the camera snapshot.
captureImage() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
captureImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
captureImageButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: buttons *
captureImageButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: Captures the canvas.
captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: Captures the canvas.
captureTime - Variable in class gov.nih.mipav.model.file.FileAvi
captureVersion - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
captureVersion - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
Cardiac - Static variable in class gov.nih.mipav.model.structures.ModelLUT
cardiacFrequency - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
cardiacFrequency - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacFrequencyIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacFrequencyPos - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacPhaseNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacPhaseNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
CARDIOLOGY - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type CARDIOLOGY, special VOI for specific tasks needed in cardiology.
caret - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
caretArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
cArray - Variable in class gov.nih.mipav.model.file.FileZVI
CArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
cart2bary(SIFT3D.Cvec, SIFT3D.Tri, SIFT3D.Cvec, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CartesianToPolar2D(ModelImage, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate.
CartesianToPolar2D(Vector2f, Vector2f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate, point based.
CartesianToPolar2D(Vector2f, Vector2f, Vector3f) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate, point based.
cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t
case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
case_weights_file - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
CASE0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE10 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE11 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE12 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE13 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE14 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE15 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CasioType1MakernoteDescriptor(MetadataExtractor.CasioType1MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
CasioType1MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory
CasioType2MakernoteDescriptor(MetadataExtractor.CasioType2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
CasioType2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory
cat2D_2D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat2D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_3D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: cat.
cat4D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: cat.
categorizeByShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Shape based similarity measure.
categorizeByTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Texture bases similarity measure.
category - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
category - Variable in class gov.nih.mipav.model.file.FileMetaImage
Category - Static variable in interface gov.nih.mipav.plugins.PlugIn
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInAlgorithm
CATEGORY - Static variable in class gov.nih.mipav.plugins.PlugInBundle
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFile
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFileTransfer
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInGeneric
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInView
CATFileName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CATPH4(int, double[][], double[][], int, int, int, int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double, double[], double[][], double[], double[], double[][], double[][], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cauchy(int, double[], double[], double[], int[], double[], int[], int[], double[], double[], double[], int, double[][], double[][], double[][], double[][], double, int, int, double[], double[], double[], double[], int[], int, double, int[], double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
CauchyLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
CB(double, double, double, double[]) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Binary interpolation call
Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CBackForward: Creates a new CBackForward object.
CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CBackForward: Creates a new CBackForward object.
cbCount() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
cbCount() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
cbf_csvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_csvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd_OI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_svd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_svd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cbfStop: Creates a new cbfStop object.
cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cbfStop: Creates a new cbfStop object.
cbgEdgeDetect_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cbgImage_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-blocks height
cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-blocks height
cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-block coding style
cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-block coding style
cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-blocks width
cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-blocks width
cBoxRemap - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileSVS
CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileTiff
CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileSVS
CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileTiff
CBRHostName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CBRImageDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CBRProjectionDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
cbuf - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: The cbuf.
cbv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbv_lc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
CBZip2InputStream - Class in gov.nih.mipav.model.file: An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
CBZip2InputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2InputStream
CBZip2OutputStream - Class in gov.nih.mipav.model.file: An output stream that compresses into the BZip2 format (without the file header chars) into another stream.
CBZip2OutputStream(OutputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
CBZip2OutputStream(OutputStream, int) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
CBZip2OutputStream.StackElem - Class in gov.nih.mipav.model.file
cc - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
cc - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
cca - Variable in class gov.nih.mipav.model.algorithms.Cephes
CCIR601_sampling - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
CCJACS(double[], int, double[], double[], double, double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Vertex connection array.
cconvert - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
ccorder - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
ccw - Variable in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
ccw - Variable in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
ccw(double[][], int, int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
ccw_rotate_about_source() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
ccw_rotate_about_target() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
cd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cd - Static variable in class gov.nih.mipav.model.algorithms.Cephes
CD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
CDCI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cdf() - Method in class gov.nih.mipav.model.algorithms.Gamma
CDF - Static variable in class gov.nih.mipav.model.algorithms.Gamma
CDF_type - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
CDF_type - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Use serialVersionUID for interoperability.
CDFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
cdff(int, double[], double[], double[], double[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
CDFLIB - Class in gov.nih.mipav.model.algorithms: Legalities ========== We place our efforts in writing this package in the public domain.
CDFLIB() - Constructor for class gov.nih.mipav.model.algorithms.CDFLIB
cdft(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CDFT_4THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cdft_arg_t() - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
CDFT_THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform: -------- DST (Discrete Sine Transform) / Inverse of DST -------- [definition] IDST (excluding scale) S[k] = sum_j=1^n A[j]*sin(pi*j*(k+1/2)/n), 0<=k DST S[k] = sum_j=0^n-1 a[j]*sin(pi*(j+1/2)*k/n), 0 ip[0] = 0; // first time only ddst(n, 1, a, ip, w); ip[0] = 0; // first time only ddst(n, -1, a, ip, w); [parameters] n :data length (int) n >= 2, n = power of 2 a[0...n-1] :input/output data (double *) input data a[j] = A[j], 0 output data a[k] = S[k], 0= 2+sqrt(n/2) strictly, length of ip >= 2+(1<<(int)(log(n/2+0.5)/log(2))/2).
cdft2(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft3(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CDFWavelets() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
cdiv(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdivi - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdivr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdjpeg_progress_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
CDMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Constructors
CDMatrix(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(int, int, double[][]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(CDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDOptimizeBase - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Constructor
CDOptimizeBFGS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeBFGS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Constructor
CDOptimizeCG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeCG() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: Constructor
CDOptimizeFuncBase - Interface in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizePS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizePS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: Constructor
CDOptimizeSA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeSA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: constructor.
CDOptimizeSD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeSD() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: constructor
CDVector - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: constructor
CDVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(CVisDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cEchoRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Echo request object.
cEchoRSP - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Echo response object.
ced_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
cedHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
ceil() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the smallest (closest to negative infinity) value that is not less than the argument and is equal to a mathematical integer.
Ceil() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes ceil() of each element.
cel12(double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Routine cel12 only calculates complete integrals of the first and second kind with complex arguments Based on the arithmetic-geometric mean procedure Ported from Tohru Morita article.
Cell() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
Cell(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
CELL - Static variable in class gov.nih.mipav.model.file.FileNRRD: The location of the sample is located in the interior of the grid element.
cell_infos_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
cell_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
cellData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: support for vtk
cellEditor - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
CellInfo() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
CellInfo(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
CellLessThan() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellLessThan
cellRenderer - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
cells - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
cellSpace - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 54 Cell spacing.
celltype(boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
celltype(boolean, boolean, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
cen_index(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cenFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 296 Center frequency method.
cenMassPt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the black and white center of mass of the contour of a VOI.
cenMassPtB - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the blue center of mass of the contour of a VOI.
cenMassPtG - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the green center of mass of the contour of a VOI.
cenMassPtR - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the red center of mass of the contour of a VOI.
censoring - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
CENSY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
center - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
center - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
center - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn center.
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point coordinate.
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning center coordinate.
center - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
center() - Method in class gov.nih.mipav.view.PatientSlice: Calculate the volume center in PatientCoordinates and set the z-value for this slice.
center() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Calculates and returns the center point of the Mesh:
center() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
center(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2: Centers the FFT for display purposes.
center(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Centers the FFT for display purposes.
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Centers the FFT for display purposes.
center(SchwarzChristoffelMapping.scmap, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Widget Center:
Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
center_fix_mt - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center_fix_quadnum - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
CENTER_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
centerAndWidth(Point3D, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CenterAndWidth(int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CenterAndWidth(int, int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CenterAndWidth(long, Point3D, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
centerBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
centerButtonSelected - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
centerCenter - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
CenterCount(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
centered_gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the gradient with centered differences
CENTERED1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
CENTERED2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
centerid - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: id of rotation center
centerInComponent(Component, JDialog) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the dialog to the center of the parent component.
centerIndex(int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CenterIndex(int, int[], int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CenterIndex(OctNode, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CenterIndex(OctNode, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
centerInWindow(Window, Window) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the window to the center of the parent window.
CENTERJSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
centerLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point center label.
centerLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
CenterOfGravity(double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
centerOfMass - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The volume's center of mass computed from computeCenter(ModelImage, int, boolean)
centerOfRotation - Variable in class gov.nih.mipav.model.file.FileInfoMetaImage: Use serialVersionUID for interoperability.
centerOnScreen(Window) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the window to the center of the screen.
CenterPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns the center point of the triangle.
CenterPointX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CenterPointY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CenterPointZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
centerPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
centerPtLocation - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration: location of the center pt VOI (for registration rotation).
centerRB - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
centerRootNode() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Centers the root node in the display.
centerRootNodeButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
centers - Variable in class gov.nih.mipav.model.file.FileNRRD: May remain null or may be created as NONE, CELL, or NODE.
centers_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
centerSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
centerTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning center tranform.
centerVOI - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: center rotation VOI
centerWeightContribution - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData
centerX - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
centerX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Canvas center coordinate.
centerY - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
centerY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Canvas center coordinate.
centerZ - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
CENTIMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement centimeters.
CENTIMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement centimeters.
CENTIMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - centimeters.
CENTR - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
CENTRAL - gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
central_frequency(PyWavelets.ContinuousWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
central_frequency(PyWavelets.DiscreteWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
centralBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
CentralDifference - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
Cephes - Class in gov.nih.mipav.model.algorithms: Correct values for ndtri are taken from scipy-main/scipy/special/tests/test_ndtr.py under the BSD-3 license: Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.
Cephes() - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double[], int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
CERES_CURVE_FITTING - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
CERES_NO_CXSPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CERES_NO_SUITESPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CERES_USE_EIGEN_SPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CeresSolver - Class in gov.nih.mipav.model.algorithms: This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
CeresSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver
CeresSolver.ArctanLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.ArmijoLineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver.AutoDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
CeresSolver.BadTestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.BFGS - Class in gov.nih.mipav.model.algorithms
CeresSolver.Block - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessDenseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessDiagonalMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.CallbackReturnType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.CallStatistics - Class in gov.nih.mipav.model.algorithms
CeresSolver.CauchyLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.Cell - Class in gov.nih.mipav.model.algorithms
CeresSolver.CellInfo - Class in gov.nih.mipav.model.algorithms
CeresSolver.CellLessThan - Class in gov.nih.mipav.model.algorithms
CeresSolver.CgnrLinearOperator - Class in gov.nih.mipav.model.algorithms
CeresSolver.CgnrSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.Chunk - Class in gov.nih.mipav.model.algorithms
CeresSolver.ComposedLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedList - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowBlockStructure - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter.indexintintComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter.indexintintItem - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.ConjugateGradientsSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.Context - Class in gov.nih.mipav.model.algorithms
CeresSolver.CoordinateDescentMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.Corrector - Class in gov.nih.mipav.model.algorithms
CeresSolver.CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.CostFunctorExample - Class in gov.nih.mipav.model.algorithms
CeresSolver.CovarianceAlgorithmType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.CRSMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.CurveFittingFunctorExample - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DenseNormalCholeskySolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseQRSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.DoglegStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.DoglegType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DumpFormatType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCompressedRowJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicNumericDiffCostFunction<T> - Class in gov.nih.mipav.model.algorithms
CeresSolver.EasyCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.EasyFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.EigenQuaternionParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluateOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluateScratch - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.Evaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluatorOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.EventLogger - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExecutionSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExponentialCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExponentialFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.FirstOrderFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.FunctionSample - Class in gov.nih.mipav.model.algorithms
CeresSolver.GoodTestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientChecker - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientCheckingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientCheckingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemEvaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverStateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.Graph<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.HomogeneousVectorParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.HuberLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.IdentityParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.ImplicitSchurComplement - Class in gov.nih.mipav.model.algorithms
CeresSolver.indexValueItem<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterationSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterativeSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.LBFGS - Class in gov.nih.mipav.model.algorithms
CeresSolver.LevenbergMarquardtStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearCostFunction - Class in gov.nih.mipav.model.algorithms: Helper cost function that multiplies the parameters by the given jacobians and adds a constant offset.
CeresSolver.LinearLeastSquaresProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearOperator - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverPerSolveOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverTerminationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirection - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirectionOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirectionType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchInterpolationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchMinimizer.State - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchPreprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LocalParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.LoggingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.LoggingType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LossFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.LossFunctionWrapper - Class in gov.nih.mipav.model.algorithms
CeresSolver.LowRankInverseHessian - Class in gov.nih.mipav.model.algorithms
CeresSolver.Minimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.MinimizerOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.MinimizerType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.MyCostFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.MyThreeParameterCostFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.NonlinearConjugateGradient - Class in gov.nih.mipav.model.algorithms
CeresSolver.NonlinearConjugateGradientType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.NormalPrior - Class in gov.nih.mipav.model.algorithms
CeresSolver.NullJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffMethodType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.OnlyFillsOneOutputFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.OrderedGroups<T> - Class in gov.nih.mipav.model.algorithms
CeresSolver.Ownership - Enum in gov.nih.mipav.model.algorithms
CeresSolver.Pair<T,U> - Class in gov.nih.mipav.model.algorithms
CeresSolver.ParameterBlock - Class in gov.nih.mipav.model.algorithms
CeresSolver.PartitionedMatrixView - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preconditioner.Options - Class in gov.nih.mipav.model.algorithms
CeresSolver.PreconditionerOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.PreconditionerType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.PreprocessedProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProbeResults - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProblemImpl - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProblemOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProductParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.Program - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProgramEvaluator<EvaluatePreparer,JacobianWriter,JacobianFinalizer> - Class in gov.nih.mipav.model.algorithms
CeresSolver.QuaternionParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.RandomizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.RandomizedFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.ResidualBlock - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScaledLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurEliminator - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurEliminatorBase - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScopedExecutionTimer - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScratchEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
CeresSolver.SizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.SizeTestingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.SoftLOneLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.Solver - Class in gov.nih.mipav.model.algorithms
CeresSolver.SolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.SolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.SparseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.SparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.SparseMatrixPreconditionerWrapper - Class in gov.nih.mipav.model.algorithms
CeresSolver.StateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.SteepestDescent - Class in gov.nih.mipav.model.algorithms
CeresSolver.SubsetParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.TerminationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.TestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.TolerantLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TranscendentalCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.TranscendentalFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.TripletSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.TripletSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrivialLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionPreprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStepEvaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyPerSolveOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategySummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.TukeyLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TypedLinearSolver<MatrixType> - Class in gov.nih.mipav.model.algorithms
CeresSolver.TypedPreconditioner<MatrixType> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VertexDegreeLessThan<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VertexTotalOrdering<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VisibilityClusteringType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.WeightedGraph<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.WolfeLineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver2 - Class in gov.nih.mipav.model.algorithms: This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
CeresSolver2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2
CeresSolver2.BiCubicInterpolator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.BlockRandomAccessSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CanonicalViewsClustering - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CanonicalViewsClusteringOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.ConditionedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CovarianceImpl - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CovarianceOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CubicInterpolator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.DynamicCompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver2.Grid1D - Class in gov.nih.mipav.model.algorithms
CeresSolver2.Grid2D - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexIntegerdoubleArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexIntegerdoubleArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexRowColItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.RowColLessThanComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.SingleLinkageClusteringOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.StorageType - Enum in gov.nih.mipav.model.algorithms
CeresSolver2.Triplet<T,U,V> - Class in gov.nih.mipav.model.algorithms
CeresSolver2.VertexTotalOrderingInteger - Class in gov.nih.mipav.model.algorithms
CeresSolver2.weighted_edgesComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.weighted_edgesItem - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
CeresSolverNISTTest.Bennett5CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.BoxBODCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Chiwrut1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Chiwrut2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.DanwoodCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Eckerle4CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.ENSOCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss3CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Hahn1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Kirby2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos3CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralaCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralbCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralcCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisraldCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.NelsonCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Rat42CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Rat43CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Roszman1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.ThurberCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest
CeresSolverTest.AbortingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadJacobianCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadLocalParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadResidualCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BardFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BealeFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BIGGS_EXP6Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BlockJacobiPreconditionerTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BlockSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Box3DFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BrownAndDennisFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BrownBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.CurveCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.CurveFittingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DenseSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DestructorCountingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipse - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseCorrectGaussNewtonStep - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseValidSubspaceBasis - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValley - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DynamicProblem - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.EvaluatorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.EvaluatorTestOptions - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ExpCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ExpectedEvaluation - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FailingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FakeIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Fixture - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FreudensteinAndRothFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FreudensteinAndRothJacobianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GaussianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GoodCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GulfResearchAndDevelopmentFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.HelicalValleyFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ImplicitSchurComplementTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.IterativeSchurComplementSolverTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.JennrichAndSampsonFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.KowalikAndOsborneFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LinearCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LinearSolverAndEvaluatorCreationTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LocallyParameterizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MatrixParameterization - Class in gov.nih.mipav.model.algorithms: Helper local parameterization that multiplies the delta vector by the given jacobian and adds it to the parameter.
CeresSolverTest.MeyerFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MockCostFunctionBase - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MockCostFunctionBase2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoJacobianUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoOpEvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoResidualUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NumParameterBlocksCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Osborne1Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Osborne2Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ParameterIgnoringCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ParameterSensitiveCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PartitionedMatrixViewTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PolynomialParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellEvaluator2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellSingularFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellSingularJacobianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ProductParameterizationTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticFirstOrderFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticTestFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.RegularizationCheckingLinearSolver - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.RememberingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Rosenbrock - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Rosenbrock2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SchurEliminatorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SchurOrderingTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SucceedingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TestParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ThreeParameterCostFunctorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryIdentityCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback.InnerClass - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WoodFunction - Class in gov.nih.mipav.model.algorithms
cerOff - Variable in class gov.nih.mipav.model.file.FileJP2
cerOn - Variable in class gov.nih.mipav.model.file.FileJP2
cf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
cfactor - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
cFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Buffer size adjustment for color images.
cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
cFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Used for construction of the preview.
Cfbf - gov.nih.mipav.model.file.MetadataExtractor.FileType
cFFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cfft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cFindRq - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: cFind request object.
cFindRsp - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: CResponse (Find response) object.
CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CForward: Creates a new CForward object.
CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CForward: Creates a new CForward object.
cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV2(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV3(double[][][], double, double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV3_precomp(double[][][], double[][][], int, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cfStop: Creates a new cfStop object.
cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cfStop: Creates a new cfStop object.
cftb040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftb1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftbsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf081(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf082(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf161(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf162(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftfsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftfx41(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftleaf(int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftmdl1(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftmdl2(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftrec1_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec1_th
cftrec2_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec2_th
cftrec4(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftrec4_th(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cfttree(int, int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftx020(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CG(double[][][][], int[], double[], int[], double[], boolean, double[][][][], double[][][][], double, int, double[][][][], boolean, double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CG(double[][][], int[], double[], int[], double[], double[][][], double, int, double[][][], boolean, double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma: This code is a port of the FORTRAN routine CGAMA from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 51-52.
CGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Gamma: Compute gamma function or log of gamma function for complex arguments
cgau(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
CGAU - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
cgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cgmo(double[][][][], double[], ModelImage, double[], int, int, double, double, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: cgmo for color Compute the color gradient at a single scale and multiple orientations
cgmo(double[][][][], double[], ModelImage, double[], int, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
cgmo(double[][][], double[], ModelImage, double, int, int, double, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: cgmo for black and white Compute the color gradient at a single scale and multiple orientations
cgmo(double[][][], double[], ModelImage, double, int, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CGNR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
CgnrLinearOperator(CeresSolver.LinearOperator, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
CgnrSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver
CGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
ch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
ch - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
ch - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader: The PNG spec states that ISO_8859_1 (Latin-1) encoding should be used for: "tEXt" and "zTXt" chunks, both for keys and values (https://www.w3.org/TR/PNG/#11tEXt) "iCCP" chunks, for the profile name (https://www.w3.org/TR/PNG/#11iCCP) "sPLT" chunks, for the palette name (https://www.w3.org/TR/PNG/#11sPLT) Note that "iTXt" chunks use UTF-8 encoding (https://www.w3.org/TR/PNG/#11iTXt).
ch - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest
ch - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
ch2 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
chamfer - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Algorithm this dialog will call.
chan - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
chan - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Use serialVersionUID for interoperability.
change_inner_max_epoch(Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Change2CNumbering(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
changeAll - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Whether or not to change all fileinfos/slices.
changeBounds(float, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: overrides and expands the min/max and or the window/level boundaries of an image based on the transfer function being applied
changeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the action button to change
changed - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
changeDicomFileSize(RandomAccessFile, long, long, int) - Method in class gov.nih.mipav.model.file.FileDicom
changedMode - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: flag to indicate current mode being changed.
changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: flag to indicate current mode being changed.
changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: flag to indicate current mode being changed.
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
changedValues - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
changedValuesBitmap - Variable in class gov.nih.mipav.model.file.FileGESigna4X
changedValuesString - Variable in class gov.nih.mipav.model.file.FileGESigna4X
changeEvent - Variable in class gov.nih.mipav.view.ImageRegistryMonitor: DOCUMENT ME!
changeEvent - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
changeExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Changes the image dimensionality or extents.
changeFilenameBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
changeIcon(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
changeImageName(String, String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Finds an image name in the table and changes it to a new value with the same variable placeholder (does nothing if the value is not in the table).
changeItoJ(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
changeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the text in the Dialog
changeLAF(String) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
changeMaskNumberDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Ref to JDialogChangeMaskNumber
changeMenuEnables() - Method in class gov.nih.mipav.view.ViewJFrameImage: Routine to enable some menu items and disable othter menu items when the dimensionality or type of the image is changed.
ChangeNameDialog(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Constructor of change name dialog.
ChangeNameDialog(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Constructor of change name dialog.
changeOrientationOrigin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Whether orientation and origin should change with flipping.
changeOrientationOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip
changePolyMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
changePolyMode(WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
changeRecordingStatus(int) - Method in interface gov.nih.mipav.model.scripting.ScriptRecordingListener: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRecordingStatus(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRecordingStatus(int) - Method in class gov.nih.mipav.view.ViewUserInterface: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
changeResolutions(ModelImage, float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Changes the resolutions of the input image.
changeSaturation(int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations: Changes the saturation of a color.
changeScriptEditingAbility(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Changes whether the current script can be edited by hand (which pauses the script recording while the editing is being done.
changeSize() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
changeToUnsignedInts - Variable in class gov.nih.mipav.model.file.FilePARREC
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!!
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
changeVOIOrder(boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
channel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
channelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
channelColorsComboBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: corresponding dropdown for each channel image
ChannelComponent(String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent: Creates a new ChannelComponent object.
channelComponentNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent
channelComponents - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
channelDataTypes - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channelDataTypes - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
channelDescription - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelImages - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
channelImages - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: extraced 3D Model Images from src image
channelImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
ChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: Creates a new ChannelInfo object.
channelInfos - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
channelMap - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
channelName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelName0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNames - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channelNames - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
channelNumber - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
channelNumber - Variable in class gov.nih.mipav.model.file.FileZVI
channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: DOCUMENT ME!
channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
channels - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
channels - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileTiff
channels - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
channelsFound - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelWeight - Variable in class gov.nih.mipav.model.file.FileInfoCZI
CHAR - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
CHAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
CharacterAtlas() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
characterCode - Variable in class gov.nih.mipav.model.file.FileSVS
characterCode - Variable in class gov.nih.mipav.model.file.FileTiff
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: DOCUMENT ME!
CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters: Character set for instances of ContourPlot.SignedDistanceCharacters.
charField - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
charHeigth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
charLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
Charsets() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Charsets
chartHeight - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartWidth - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartXend - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartXstart - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartYend - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartYstart - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
charWidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
chbevl(double, double[], int) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHBEVL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chckbxfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxForwardsbackwards - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxLeftright - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxUpdown - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chder(double, int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
chder(DoubleDouble, int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
chdtr(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chdtrc(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chdtri(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2: array of dimension (maxp1,25) containing the chebyshev moments
chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: array of dimension (maxp1,25) containing the chebyshev moments
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NESolve
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebzeros(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CHECK - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
CHECK(double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
check_1() - Method in class gov.nih.mipav.model.algorithms.curfit
check_ans(CVODES.NVector, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
check_coefficients(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_coefficients_biorthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_coefficients_orthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_divergence(NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_gradients - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
check_level(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_momentum_setting(double[], NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_perm(String, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
check_reconstruction(PyWavelets.MODE, PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_repfnz(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
check_stop_condition(int[], String[], boolean[], NonnegativeMatrixFactorization.info, int, NonnegativeMatrixFactorization.info, NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_svd(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet
CHECK1(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
CHECK2(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
checkAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
CheckAllEvaluationCombinations(CeresSolverTest.ExpectedEvaluation) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Selects all the paths in the tree.
checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
checkAutosave - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
checkBlurring() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: check the variables of the unsharping-mask panel as they are translated from dialog inputs (ie., JTextFields) to more usable, native types.
checkbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
checkBox - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
checkBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
checkBox - Variable in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
checkBox - Variable in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
checkBoxArrList - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This is the ArrayList of JCheckBoxes
checkboxBoundingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display bounding box around VOI
checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
CheckBoxEditor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
checkboxEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
checkBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
checkBoxHardSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
checkboxIncludeForProcessing - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to include the selected VOI for statistics processing
checkboxLabels - Variable in class gov.nih.mipav.view.JPanelChecklist: must be same size as listLength.
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkboxNames - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This is a list of the checkbox names that is used for validation of user input to make sure there are no duplicates
checkboxOpacity - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display VOI with shading
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel holding statistics options.
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: A reference to the JDialogVOIStatistic or JDialogVOIStats check box panel.
CheckBoxRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
checkboxSaveStats - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to save statistics to a file
checkBoxShowLight - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Check box to show the light bulb or not.
checkboxVOIName - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display VOI name
checkBoxWienerSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
checkBSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: check border size of the frame, range (0,10).
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: To check if the date is a valid date in the calendar.
checkChildren - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
checkDate(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Checks the date to be sure the user didn't enter the start after the end.
checkDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
CheckDimensions(CeresSolver.ProbeResults, Vector<Integer>, Vector<Integer>, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CHECKED_EVEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
CHECKED_ODD - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkedFileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This a list is the list of checked check boxes that is populated when user hits apply
checkEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: From the target 2D slice, compare it with end slices based atlas.
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: From the target 2D slice, compare it with end slices based atlas.
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: From the target 2D slice, compare it with end slices based atlas.
checkEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
checkEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
checkerboardApplied - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
checkerBoardButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to enable checker board display of two images.
checkerboardTypesCB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
checkerboardTypesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
checkerDialog - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Dialog used to set properties of the checkerboard display:(Image A displayed in alternating squares with Image B.
CheckEvaluation(CeresSolver.CostFunction, boolean, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkFields() - Method in class gov.nih.mipav.view.JPanelEdit: Abstract method notifying the owner if the incorporated fields need to be re-entered.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditAxisOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditBoolean: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditChar: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditDate: Because DICOM requires 4-digit years, we must check the year field.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditDefault: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditImageOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditModality: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditRace: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditSetOrParam: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditSex: method does nothing in this class.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditTime: If owner were to check, this panel always checks out fine.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditValueType: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
checkForActiveVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
checkForActiveVOIs() - Method in class gov.nih.mipav.view.ViewJFrameImage
CheckForDuplicates(Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
CheckForPairDuplicates(Vector<CeresSolver.Pair<double[], double[]>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
checkFrontEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
checkGSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: checks the settings of grid size controls.
checkHeapMaxAgainstPreferences() - Method in class gov.nih.mipav.view.ViewUserInterface: Test for VM memory sizes being the same as last run in preferences: displays a user-warning that the preferences & VM config files disagree and presents the JDialogMemoryAllocation dialog with "use preference" buttons to quicken the matching process.
checkIfNeedCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Checks the dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Checks that the two input images match extents, units of measure and resolutions.
checkImages - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: DOCUMENT ME!
checkIncrementTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: check border size of the frame, range (0,10).
checkInput(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CheckIntPairToLong(int, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: boolean array mirroring checkbox panel's selection.
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: VOI properties check list.
checkListExtract - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkListInsert - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Array of length totalSlices, false where slice is already present, true where slice must be inserted.
checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
CheckLongToIntPair(String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkMagicNumber() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
CheckManifold() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
checkMaxSlice(FileDicomTagTable, int, TreeSet<Integer>) - Method in class gov.nih.mipav.model.file.FileDicom: Helper method for enhanced dicom which finds the maximum slice number in the dataset.
checkMeshPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Check that the currently loaded proxy geometry is the default cube, if it is not reload it onto the GPU.
checkMinimum(AlgorithmConstrainedELSUNCOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Check if the given minimum is within the translation and rotation bounds.
checkMinimum(AlgorithmConstrainedOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Check if the given minimum is within the translation and rotation bounds.
checkName(String, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkOnEdge(ModelTriangleMesh, Point3f, int[], Vector3f, TexCoord3f, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
checkOnEdge(TriMesh, Vector3f, int[], Vector3f, Vector3f, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
checkOnFrameClose - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
checkOptionInStr(String, String) - Method in class gov.nih.mipav.model.algorithms.libdt
checkOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
CheckParams(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
checkParentDir(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
checkParentDir(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData: Creates the parent directory for the output images and data created by worm segmentation and untwisting:
checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Checks whether the popup should be called
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
checkPositiveIntegers(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
checkPrefDirCommand(String[], int) - Static method in class gov.nih.mipav.view.ViewUserInterface: If the preferences name command is about to be performed before an existing preferences directory command, this guarantees that the directory command will be executed first.
checkPreference(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This method does the check with the preferencesFileTypes array to determine if the checkbox should be checked initalially
checkProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Check to see if the position of the mouse is close to one of the points in the LUT transfer function or the line drawn in between the points.
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Check to see if the position of the mouse is close to one of the points in the LUT transfer function or the line drawn in between the points.
checkRCTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: checks the settings of light box row/column controls.
CheckRotationMatrixToAngleAxisRoundTrip(double, double, double, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkSave - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
checkSeamCells(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
checkShow - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Check box for whether to display files that are not likely sources of MIPAV plugins
checkSide(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
checkSiemens - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
checkSiemens3d() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
checkSize() - Method in class gov.nih.mipav.model.structures.TransferFunction: Checks the size of the point array to make sure it is big enough.
checkStatus() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
checkstop(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
checkstop(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
checkSum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 54 - 16 bit end around carry sum of pixels **** (read as unsigned short).
checkTag(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Checks the text field data for the proper format.
checkText(JTextField, double, double) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: verify that the numeric value of the text of the submitted JTextField is between a and b.
checkText(JTextField, float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: verify that the numeric value of the text of the submitted JTextField is between a and b.
checkThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: handling of intensity threshold.
checkTree - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: The checkbox tree version of the tree in the panel.
checkTree - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags
CheckTreeCellRenderer(TreeCellRenderer, CheckTreeManager.CheckTreeSelectionModel) - Constructor for class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
CheckTreeManager - Class in gov.nih.mipav.view
CheckTreeManager(JTree) - Constructor for class gov.nih.mipav.view.CheckTreeManager
CheckTreeManager.CheckTreeCellRenderer - Class in gov.nih.mipav.view
CheckTreeManager.CheckTreeSelectionModel - Class in gov.nih.mipav.view
CheckTreeSelectionModel(TreeModel) - Constructor for class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
checkUnorderedVariables(StochasticForests.Data, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
checkUnpack - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Check box for unpacking container files
checkUnsharping() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: check the variables of the unsharping-mask panel as they are translated from dialog inputs (ie., JTextFields) to more usable, native types.
CheckValueAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction
CheckValueAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction
checkValues() - Method in class gov.nih.mipav.model.algorithms.libdt.PatchOptions
CheckViewIntersection(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: The volume data is rendered with a fragment (pixel) shader on the GPU.
CHESHIRE - Static variable in class gov.nih.mipav.model.file.FileUtility: Cheshire file type (a kind of Analyze). extension: .imc Can also have .img extension
CHESHIRE_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileUtility: Cheshire overlay file type.
chf - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
chgubi(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chguit(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chgul(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chgus(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chi - Variable in class gov.nih.mipav.model.algorithms.Cephes
CHI - Variable in class gov.nih.mipav.model.algorithms.NelderMead
CHI_SQUARED_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
CHI_SQUARED_INVERSE_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
CHI_SQUARED_PROBABILITY_DENSITY_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
chi2_cutoff(int, double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
child_nodeIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
childDir(File) - Method in class gov.nih.mipav.model.file.FileBRUKER: Returns an ArrayList of all the names of subdirectories of the directory denoted by currentDir.
ChildOverlap(int, int, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
children - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
children - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
children() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
childTagTables - Variable in class gov.nih.mipav.model.file.FileDicomTagTable: A list of tag tables which point to this as their reference tag table.
chInterpType - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
chInterpType - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
ChirpZ(double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ChirpZTransform - Class in gov.nih.mipav.model.algorithms.filters
ChirpZTransform() - Constructor for class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
ChirpZTransform(double[][], double[][], int, double[], double[], boolean, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
chisq - Variable in class gov.nih.mipav.model.algorithms.NLFittedFunction: Total error as X^2
chiSquared - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
chiSquared - Variable in class gov.nih.mipav.model.algorithms.NESolve
chiSquaredCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
chiSquaredInverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
chiSquaredProbabilityDensityFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
Chiwrut1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut1CostFunction
Chiwrut1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut2CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut2CostFunction
Chiwrut2Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut2Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
chkForceUBYTE - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
chkMultiFile(int, boolean) - Static method in class gov.nih.mipav.model.file.FileIO: Sets specific types to be multifile based on the input argument.
chkSave - Variable in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
chkShowTalairachGrid - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: "Show talairach grid" checkbox.
chkShowTalairachGridMarkers - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: "Show talairach gridmarkers" checkbox.
chkUnchkPanel - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
CHKXER(String, int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
choiceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
cholproj(double[][], boolean[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
choose(double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
choose(DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
chooseDirectory(String) - Method in class gov.nih.mipav.view.ViewDirectoryChooser: Shows the file dialogs with the given directory as the default.
chooseGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
choosePoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
choosePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
chooser - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
chooser - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
chooser - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
chooser - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
chooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
chooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
chooser - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
chosenFile - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
chPrev - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
cHRM - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
chunk - Variable in class gov.nih.mipav.model.structures.IntVector: The number of elements to add to the total number allocated when more space is needed to store the data in the vector.
chunk - Variable in class gov.nih.mipav.model.structures.PointStack: DOCUMENT ME!
Chunk() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Chunk
chunk_outer_product_buffer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
ChunkDiagonalBlockAndGradient(CeresSolver.Chunk, CeresSolver.BlockSparseMatrix, double[], int, double[][], double[], double[], CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
ChunkOuterProduct(int, CeresSolver.CompressedRowBlockStructure, double[][], double[], HashMap<Integer, Integer>, CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
chunks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
chunky - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ci - Variable in class gov.nih.mipav.model.algorithms.Cephes
Ci() - Method in class gov.nih.mipav.util.DoubleDouble
CIELabButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
CIELabButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
cieLabImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
CIELABSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
CIELABtoRGB(float[]) - Method in class gov.nih.mipav.model.file.FileSVS
CIELABtoRGB(float[]) - Method in class gov.nih.mipav.model.file.FileTiff
cimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
cimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
cImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
cine(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Loops through the images and displays them.
cineRate - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
cinfo - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
cinfo - Variable in class gov.nih.mipav.model.file.libjpeg
CINRAD(int, int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Circle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
Circle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Current three types of widget:
CIRCLE - gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode
CIRCLE - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
CIRCLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CIRCLE - Static variable in class gov.nih.mipav.model.structures.VOIBase
CIRCLE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
CIRCLE_2D - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
CIRCLE_2D - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
Circle2f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Circle2f
circleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
circleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Buttons for selecting magnifying shape.
CircleClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: Creates the circle widget for the multi-histogram interface.
CircleClassificationWidget(int, int, Vector2f, Vector2f, Texture, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: kernel diameter.
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: kernel diameter.
circleDiameterErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Erosion kernel diameter.
circleDiameterErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Erosion kernel diameter.
circleImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
circleRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
CircleUtil - Class in gov.nih.mipav.util: Public utility class for generating approximations to circles and spheres.
CircleUtil() - Constructor for class gov.nih.mipav.util.CircleUtil
circshift(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
circularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
circularity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
circularityDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
cisia(DoubleDouble, DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: This is a port of subroutine CISIA which computes cosine and sine integrals from Computation of Special Functions by Shanjie Zhang and Jianming Jin.
city - Variable in class gov.nih.mipav.model.file.FileInfoCZI
CITY_BLOCK - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
CITY_BLOCK - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
cityBlock - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
cityBlock() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
CJACSU(double[], int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ck_eta - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_etamax - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_gammap - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_h - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_hprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_hscale - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_l - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_L - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ck_next - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_Ns - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_nst - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_qprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_quadr - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_quadr_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_qwait - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_saved_tq5 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_t0 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_t1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tau - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tq - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tretlast - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_zn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_zqm - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
cki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
CkpntMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ckr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
ckr2allRegular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Second order classic kernel regression function for regularly sampled data
ckr2Irregular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2IrregularCIELab() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2L1Regular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Second order classic kernel regression function with L1-norm for regularly sampled data
ckr2Regular(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2RegularCIELab(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckrinfo - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
ckrinfo_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
cl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cl - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cl - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
cl - Variable in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode
CL_data() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
cl_image - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
cl_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cl_valid - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
cLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
CLag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
clamp - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clamp - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clamp(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(float, float, float) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
clamp(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ExtentionMath
clamp(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
Clamp(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Clamps the vector to [min,max].
CLAMP(int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
clamp_0_1(double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Clamps a value to the range [0.0, 1.0].
clamp_0_255(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot: Clamps a value to the range [0,255].
clampCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clamped - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Perform a "contrast limited" AHE.
clampImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampingIsNecessary - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: perform a "contrast limited" AHE.
clampingValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Clamp the input normalized path distance to the range [0,1].
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Clamp the input normalized path distance to the range [0,1].
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
clampValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clampValueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampValueText - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
CLASS - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Class Files (*.class).
CLASS(int, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
class_id - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
class_id - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
class_max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
class_min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
class_number - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
class_number - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Use serialVersionUID for interoperability.
class_state - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
classAdd(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
classAdd(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
classConsistencyCheck(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
ClassData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData
classes - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
classicStepSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
classicStepSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
classification(C_AAMMODEL, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Classification testing routine.
classification(C_AAMMODEL, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Classification testing routine.
classification_table - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: classification image to hold the SVM readable features.
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
ClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This is the base class for the Multi-histogram widgets.
ClassificationWidget() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Default Constructor
ClassificationWidget(ClassificationWidget) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Copy Constructor.
ClassificationWidget(Vector2f, Vector2f, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Create a new ClassificationWidget.
ClassificationWidgetEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This class sets up and communicates with the GLSL shader program used to render the interior of the widget in the multi-histogram panel.
ClassificationWidgetEffect(Texture, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Creates a new ClassificationWidgetEffect with the texture specified.
ClassificationWidgetState - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This class stores the information needed for calculating how the multi-histogram is applied to the volume to create the rendered image.
ClassificationWidgetState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Default Constructor:
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Feature
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
classify() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
classLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
ClassLogLikelihood(double[], double[], AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ClassLogLikelihood_init(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
className - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
classnum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
classNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
classNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
ClassSelectorPanel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
ClassSig() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
ClassStateStruct() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.ClassStateStruct
classText - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
ClassType() - Constructor for enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType
ClassType() - Constructor for enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType
classUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Class UID.
CLEAN_FAX_DATA - Static variable in class gov.nih.mipav.model.file.FileSVS
CLEAN_FAX_DATA - Static variable in class gov.nih.mipav.model.file.FileTiff
cleanBuffer(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
cleanData() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
cleanFaxData - Variable in class gov.nih.mipav.model.file.FileSVS
cleanFaxData - Variable in class gov.nih.mipav.model.file.FileTiff
cleanImageB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
cleanImageBufferA - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to store ARGB images of the image presently being displayed.
cleanImageBufferB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
cleanImageBufferB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to store ARGB images of the image presently being displayed.
cleanLine(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Removes points (vectors) that form sharp angles (i.e. smoothes boudnary) Also adds points separated by some distance and removes adjacent points
cleanLine(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Removes points (vectors) that form sharp angles (i.e. smoothes boudnary) Also adds points separated by some distance and removes adjacent points
cleanLine(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
cleanLine(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
cleanMouseRecorder() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Clean mouse recorder for any existing event items.
cleanMouseRecorder() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Clean mouse recorder for any existing event items.
cleanPrunedModes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
cleanSelected() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
cleanup() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Sets structures to null.
cleanup() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Sets the structures to null.
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: cleanup
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: cleanup
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: cleanup
cleanup() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
cleanup() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Cleans up the memory usage.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Prepares this class for destruction.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Dispose of temporary images after the deconvolution process is completed:
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: Cleans up the memory usage.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
cleanUp() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Delete all member variables needed for the mesh segmentation, but not needed for getTriangleArrayIndices.
cleanUp() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: cleanUp deletes the data stuctures used for the Dijkstra's search, but does not delete the array of points on the Geodesic curve.
cleanUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: cleanUp deletes the data stuctures used for the Dijkstra's search, but does not delete the array of points on the Geodesic curve.
cleanUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
cleanup_Affine(SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Gauss_filter(SIFT3D.Gauss_filter) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_GSS_filters(SIFT3D.GSS_filters) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Keypoint_store(SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Mat_rm(SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Mesh(SIFT3D.Mesh) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Pyramid(SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Reg_SIFT3D(SIFT3D.Reg_SIFT3D) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Sep_FIR_filter(SIFT3D.Sep_FIR_filter) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_SIFT3D(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_SIFT3D_Descriptor_store(SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Slab(SIFT3D.Slab) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanupAndExit() - Method in class gov.nih.mipav.view.ViewUserInterface
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
cleanVolumePositionPanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Clears the volumePositionPanel, so it can be recreated when the volumePositionFrame is closed:.
clear() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
clear() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
clear() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.Homology
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.Loop
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
clear() - Method in class gov.nih.mipav.model.algorithms.LSCM.Parser
clear() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Removes all VRs from hash table.
clear() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Removes all parameters from the table.
clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors
clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors2
clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
clear(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Clear all geodesics curves drawn on the surface.
clear(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Clear all geodesics curves drawn on the surface.
clear(int) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Clears the text area.
clear(int) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Clears the text area.
clear(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
Clear() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
Clear() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Deletes all points and triangles.
clear_all() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
clear_all() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
clear_mark(int, int, int, int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
clear_rec(KDTree.kdnode) - Static method in class gov.nih.mipav.model.algorithms.KDTree
clear_results(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
CLEAR_TAGS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For removing all tags from the main dialog
clear3DSelection() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
clear3DSelection() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
clear3DSelection() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
clear3DSelection() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Clears the selected VOI or Annotation point.
clearACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
clearAdditionalSets() - Method in class gov.nih.mipav.model.file.FileImageXML: Convenience method to clear any additional sets of the enumerated list that might be written into the header file.
clearAddLeftRightMarkers() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Enables user to start editing the lattice.
clearAllContexts() - Method in class gov.nih.mipav.plugins.JarClassLoader
clearAllCuts() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Undoes all cuts and replaces the cut mesh with the original mesh.
clearAllCuts() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Undoes all cuts and replaces the cut mesh with the original mesh.
clearAllDataText() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to clear all of data frame.
clearAllStartEnd() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: clears the all the points added in livewire mode when clear all is called from the user interface.
clearAllStartEnd() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: clears the all the points added in livewire mode when clear all is called from the user interface.
clearAllWidgets() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
clearArrays() - Method in class gov.nih.mipav.model.algorithms.ODE
clearArrays() - Method in class gov.nih.mipav.model.algorithms.ODEEP
clearB() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearB(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
clearByteArray(byte[]) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Simple routine to fill a byte array with ' '
clearChanged() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
clearChanged() - Method in interface gov.nih.mipav.model.util.Observable: Marks this object as no longer having been changed.
clearClippedVOIs() - Method in class gov.nih.mipav.view.ViewUserInterface: Deprecated.
clearCurves(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Resets the natural spline curves when the lattice changes.
clearCut(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Clear the current geodesics curve drawn on the surface.
clearCut(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Clear the current geodesics curve drawn on the surface.
clearD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
ClearDataItems() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
ClearDataItems() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Deletes the data matrix.
clearDataMask(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
clearDotTables(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
clearDWITableButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
clearedPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
clearedPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
ClearFF(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearFlags() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearFlags() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: clearGeodesic: called when the "Clear Geodesic" Button is pressed.
clearGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: clearGeodesic: called when the "Clear Geodesic" Button is pressed.
clearInflectionPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
clearInflectionPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
clearInflectionPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian
clearLastCut() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Undoes the last cut operation.
clearLastCut() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Undoes the last cut operation.
clearLastStartEnd() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: clears the last points added in livewire mode when clear last point is called from the user interface.
clearLastStartEnd() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: clears the last points added in livewire mode when clear last point is called from the user interface.
clearList() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
clearList(Vector<VOISaveState>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
clearMask() - Method in class gov.nih.mipav.model.structures.ModelImage: Sets the entire mask object to false.
CLEARMASK - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream
clearMatrices() - Method in class gov.nih.mipav.model.structures.MatrixHolder: Removes all matrices from the map.
clearPath() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
clearPath() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Clear the annotated path
clearPathButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: cleaning the planned path button.
clearPicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Clears the current picked widget.
clearPointsBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian
clearPresentationContexts() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Removes all elements from the presentation contexts vector list.
clearProtractor() - Method in class gov.nih.mipav.view.ViewJComponentTriImage
clearR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearResampleOriginalValues() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
clearResampleStatusBox() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
ClearRows(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
clearS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: clearSculpt: called by ViewJFrameVolumeView when the user presses the "Clear Ouline" button, clearing the sculpt outline from the canvas image.
clearSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: clearSculpt: called by ViewJFrameVolumeView when the user presses the "Clear Ouline" button, clearing the sculpt outline from the canvas image.
clearSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: clearSculpt: called by ViewJFrameVolumeView when the user presses the "Clear Ouline" button, clearing the sculpt outline from the canvas image.
clearSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Clears the sculpt image.
clearSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Clear the sculpt region.
clearSculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: clearwSculptRegion: called when the "Clear Outline" Button is pressed.
clearSculptRegion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: clearwSculptRegion: called when the "Clear Outline" Button is pressed.
clearSortingState() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
clearTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
clearTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
clearTransformStatusBox() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
clearUndoRedo() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
clearUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clearV() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
clearValueTables() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
clearVoxelLabel() - Method in class gov.nih.mipav.view.JPanelHistogram: Resets the threshold volume and area labels.
clearVoxelLabel() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Clears (blanks out) the threshold voxel information (when RGB mode or not thresholding).
clearVoxelLabel() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
clearW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
ClearW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
clength - Variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream: Length of codestream
CLFFTDataFormat() - Constructor for enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDataFormat
CLFFTDim3(int[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDim3
CLFFTDirection() - Constructor for enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection
CLFFTKernelDir() - Constructor for enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir
CLFFTKernelInfo() - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
CLFFTPlan - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan(CLContext, int[], CLFFTPlan.CLFFTDataFormat) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan: Create a new FFT plan.
CLFFTPlan.CLFFTDataFormat - Enum in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.CLFFTDim3 - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.CLFFTDirection - Enum in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.CLFFTKernelDir - Enum in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.CLFFTKernelInfo - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.fftPadding - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.InvalidContextException - Exception in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLFFTPlan.WorkDimensions - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
CLGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
CLICK_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The mode where the user picks an arbitrary point to start a paint grow from.
clickPoints - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
clickTimer - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
climb(AlgorithmMSER.VlMserReg[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER: Climb the region forest to reach a root The function climbs the regions' forest r[] starting from the node idx to the corresponding root.
clindex - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
clindex - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
clip - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys
clip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
clip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
clip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
clip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
clip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
clip - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
clip(int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: after generating a histogram, clip will reduce the number of pixels attributed to that brightness level.
clip(int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: after generating a histogram, clip will reduce the number of pixels attributed to that brightness level.
Clip - Static variable in class gov.nih.mipav.model.file.FileLIFF
Clip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
CLIP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
CLIP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
CLIP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
CLIP - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
CLIP_A - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_A - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_A - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_A_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
clip_component(FileJPEG2000.opj_image_comp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
CLIP_EYE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_EYE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_EYE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_EYE_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_EYE_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_EYE_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
clip_line(delaunay.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
CLIP_X - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_X - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_X - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_X_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_X_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_X_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_Y - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_Y - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_Y - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_Y_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_Y_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_Y_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_Z - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_Z - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_Z - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
CLIP_Z_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
CLIP_Z_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
CLIP_Z_INV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
clipAEParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipAEParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipAESetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipAESetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipAnisotropyBuffer() - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: clipAnisotropyBuffer
clipAnnotations(VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
clipArb - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
clipBox - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
clipButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to invoke all the six clipping planes.
clipButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to invoke all the six clipping planes.
clipCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
clipColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
ClipColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
clipContributingStatus - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
clipCount - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Counters show the event number in the mouse recorder.
clipDisableButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to disable all the six clipping planes.
clipDisableButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to disable all the six clipping planes.
ClipDisplayed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
clipDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
clipEllipsoidSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipEllipsoidSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
ClipEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
clipEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipEvents - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Mouse event vector that record the clipping plane sliders changes.
clipEye - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
clipEyeI - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
clipGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
clipGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Clipping user-interface panel:
clipI - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
clipLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
clipLattice - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
clipLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
clipLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
clipMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
clipMaskButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to crop the clip volume.
clipMaskButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to crop the clip volume.
clipMaskUndoButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to undo crop the clip volume.
clipMaskUndoButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to undo crop the clip volume.
clipMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Maximum clipping modes if data result value exceeds the capacity of image's data type.
clipMax - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Minimum and maximum clipping modes.
clipMax - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Maximum clipping modes if data result value exceeds the capacity of image's data type.
clipMaxC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
clipMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Minimum clipping modes if data result value exceeds the capacity of image's data type.
clipMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Minimum and maximum clipping modes.
clipMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Minimum clipping modes if data result value exceeds the capacity of image's data type.
clipMinC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
clipMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Clipping mode.
clipMode - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Clipping mode.
clipMode - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Clipping mode.
clipMode - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: clip mode
clipMode - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
clipMode - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
clipMode - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
clipOBBParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipOBBParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipOBBSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipOBBSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
clipPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dialog to turn the clipping palne box on and off.
clipPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dialog to turn the clipping palne box on and off.
clipPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
clipPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
clipParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipped(float, float, float[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Support for clipping line segments against coordinate planes.
clippedBuffer - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy file data buffer *
clippedMatrix - Variable in class gov.nih.mipav.view.ViewUserInterface: Matrix for copy/paste actions in image's or between image's matrix edit panel.
clippedPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
clippedScannerVectors - Variable in class gov.nih.mipav.view.ViewUserInterface: DOCUMENT ME!
clippedVOIs - Variable in class gov.nih.mipav.view.ViewUserInterface: Vector to hold clipped VOIs (multiple).
clipping - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn surface clipped or not.
clipping - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning surface being clipped or not.
clipPlaneButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to invoke clipping planes.
clipPlaneButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to invoke clipping planes.
clipRegionXNeg - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The clip plane position in the box.
clipRegionXPos - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The clip plane position in the box.
clipRegionYNeg - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
clipRegionYPos - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
clipRegionZNeg - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
clipRegionZPos - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
clipSaveButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button to save clipped region.
clipSaveButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Button to save clipped region.
clipSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipSliceA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane yellow boundary indicator box.
clipSliceA - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z, arbitrary.
clipSliceA_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping branch group.
clipSliceAIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane yellow boundary indicator box.
clipSliceAIndicator_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping branch group.
clipSliceStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping plane boundary box.
clipSliceStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping plane boundary box.
clipSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The bounding box frame around the clipping planes.
clipSliceX - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z, arbitrary.
clipSliceXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X, Y, Z inverse clipping slice boundary box.
clipSliceXNeg - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z negative.
clipSliceY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The bounding box frame around the clipping planes.
clipSliceY - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z, arbitrary.
clipSliceYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X, Y, Z inverse clipping slice boundary box.
clipSliceYNeg - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z negative.
clipSliceZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The bounding box frame around the clipping planes.
clipSliceZ - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z, arbitrary.
clipSliceZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X, Y, Z inverse clipping slice boundary box.
clipSliceZNeg - Variable in class gov.nih.mipav.view.renderer.SceneState: Clipping slider values for the triplanar clipping slider x, y, z negative.
clipSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
clipSliderStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static, static inverse and arbitrary clipping plane boundary box.
clipSliderStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static, static inverse and arbitrary clipping plane boundary box.
clipSliderX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders for the image planes.
clipSliderY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders for the image planes.
clipSliderZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders for the image planes.
clipSphereParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipSphereParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipSphereSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
clipSphereSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
clipText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
ClipTree() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
clipValue - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
ClipValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
clipVOIButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
clipVOIIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
clone() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
clone() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
clone() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
clone() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D
clone() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
clone() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D
clone() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
clone() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
clone() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
clone() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Perform a deep copy of this tag table.
clone() - Method in class gov.nih.mipav.model.file.FileMincAttElem: Creates a new MincAttElem with the same parameters and values as this one.
clone() - Method in class gov.nih.mipav.model.file.FileMincDimElem: Returns a new MincDimElem with the same values as this one.
clone() - Method in class gov.nih.mipav.model.file.FileMincVarElem: Creates a new version of this variable, copying all the important information.
clone() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry: Copies the object.
clone() - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Copies the object.
clone() - Method in class gov.nih.mipav.model.structures.MatrixHolder: Copies the object.
clone() - Method in class gov.nih.mipav.model.structures.ModelImage: Copies the image and all data associated with the image (i.e.
clone() - Method in class gov.nih.mipav.model.structures.ModelSerialCloneable: Copies the object that extends this class through use of Serialization.
clone() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Copies the object.
clone() - Method in class gov.nih.mipav.model.structures.TransferFunction: Copies the object that extends this class.
clone() - Method in class gov.nih.mipav.model.structures.TransMatrix
clone() - Method in class gov.nih.mipav.model.structures.TransMatrixd
clone() - Method in class gov.nih.mipav.model.structures.VOI: Clone function that calls the super (modelserializable) clone and then manually copies references to the transient VOIListeners (eventlistenerlist)
clone() - Method in class gov.nih.mipav.model.structures.VOIBase
clone() - Method in class gov.nih.mipav.model.structures.VOIContour
clone() - Method in class gov.nih.mipav.model.structures.VOILine
clone() - Method in class gov.nih.mipav.model.structures.VOIPoint
clone() - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
clone() - Method in class gov.nih.mipav.model.structures.VOIProtractor
clone() - Method in class gov.nih.mipav.model.structures.VOIText
clone() - Method in class gov.nih.mipav.util.DoubleDouble: Creates and returns a copy of this value.
clone() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Clone the current branch state.
clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Clone the current branch state.
clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Clone the current branch state.
clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
clone() - Method in class gov.nih.mipav.view.ViewTableModel: Copies the object that extends this class.
clone(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
clone(String) - Method in class gov.nih.mipav.model.structures.ModelImage: Copies the image and all data associated with the image (i.e.
Clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity: Clone this instance
Clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Clone this instance.
Clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Clone function (conveys type info).
Clone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction
Clone(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Anyalyze/Synthesize object clone
Clone(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Clones itself.
clonedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: Model Images
clonedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark
clonedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: image and cloned image
cloneElementsAt(int, int) - Method in class gov.nih.mipav.model.structures.HQueue: cloneElementsAt();
cloneFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess: This method gives clo the file info of orig.
close() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text: disposes of the GL resources of this text object, i.e deletes the vertex array.
close() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: Closes both the input and output streams if not null.
close() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Disconnect socket and free up memory.
close() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Closes the socket.
close() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
close() - Method in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
close() - Method in class gov.nih.mipav.model.file.FileDicom: Closes random access file associated with this object.
close() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Closes random access file.
close() - Method in class gov.nih.mipav.model.file.FileRaw: Closes random access file associated with this object.
close() - Method in class gov.nih.mipav.model.file.FileRawChunk: Closes the file.
close() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Closes the underlying RandomAccessFile from where the image data is being read.
close() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Closes the underlying RandomAccessFile from where the image data is being read.
close() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Closes the underlying file or netwrok connection to where the data is written.
close() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Closes the frame.
close() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Closes the image.
close() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Closes the image.
close() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Closes the frame and calls disposeLocal and dispose.
close() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Closes the frame.
close() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter: Close.
close() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Closes the frame.
close() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Closes both image A and image B (if it exists).
close() - Method in class gov.nih.mipav.view.ViewJFrameBase: Closes both image A and image B (if it exists).
close() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
close() - Method in class gov.nih.mipav.view.ViewJFrameImage: Closes window and disposes of frame and component.
close() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Closes the frame.
close() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Closes window and disposes of frame and component.
close() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Disposes of components and frame.
close() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Disposes of components and frame.
close(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: Closes both image A and image B (if it exists).
close(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: Closes window and disposes of frame and component.
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
CLOSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Closes the dialog
CLOSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
close_backing_store(libjpeg.backing_store_info) - Method in class gov.nih.mipav.model.file.libjpeg
close_backing_store(libjpeg.jpeg_decompress_struct, libjpeg.backing_store_info) - Method in class gov.nih.mipav.model.file.libjpeg
close_length - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
close_length - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
close_to_1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv
closeAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
closeAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
closeAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
closeAllImages() - Method in class gov.nih.mipav.view.ViewUserInterface: this method closes all registered images
closeAllImages(boolean) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: closeAllImages -- clears the scenegraph of all displayed images and deletes references to the images:
closeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Close button is used to close the dialog.
closeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
closeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
closeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
closeButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Close button is used to close the dialog.
closed - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
closed - Variable in class gov.nih.mipav.model.structures.VOIBase: True when this is a closed contour.
CLOSED_BEZIER - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
CLOSED_BEZIER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CLOSED_BEZIER - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
CLOSED_POLYLINE - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
CLOSED_POLYLINE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CLOSED_POLYLINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
closeDimension - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
closeDimension - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
closedOkay - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
closedTag(String, String) - Method in class gov.nih.mipav.model.file.FileXML: Simple function to write an xml formatted closed tag including the tag value.
closedTag(String, String, Vector<FileXML.XMLAttributes>) - Method in class gov.nih.mipav.model.file.FileXML: Writes a closed tag (tag, end tag) with the addition of attributes (name="value") from within a Vector (can do any number of XMLAttributes ...class included below)
closedTag(String, Vector<FileXML.XMLAttributes>) - Method in class gov.nih.mipav.model.file.FileXML: Writes a closed tag where no value is specified, only attributes.
closedTagGifti(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Simple function to write an xml formatted closed tag including the tag value.
closedTagWithCDATA(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Simple function to write an xml formatted closed tag including the tag value.
closeEyeTrackingLogfile() - Static method in class gov.nih.mipav.view.MipavUtil: close the eye tracking log.
closeFiberTractGroup() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Called after a mouse drag on mouse release, when the user has drawn tracks interactively and then finishes.
closeFrame() - Method in class gov.nih.mipav.view.JFrameHistogram: Closes the stand-alone interface frame.
closeImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Closes image and updates display.
closeImageA() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Closes image A.
closeImageB() - Method in class gov.nih.mipav.view.JFrameHistogram: Closes imageB and removes the tabbed-pane interface, replacing it with a single interface panel.
closeImageB() - Method in class gov.nih.mipav.view.ViewJFrameBase: Removes image B from the frame and resets image A to be the active frame for all image controls.
closeImageB() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Closes image B.
closeImageB() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Closes the image B and performs cleanup.
closeIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The number of closings to perform.
closeIterations - Static variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Number of closing operations to perform.
closeKernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Use the sized circle kernel for the closing.
closeKernelPixels - Static variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: The nuber of pixels to include in the initial closing kernel diameter.
closeKernelSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size of the kernel to use in closings.
closeKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Size of the kernel used in the closing operations.
closeKernelSizeTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Text field used to enter the number of closings to perform.
closeLabel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: The associated label to close the bar
closeList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List to determine which progress bar to close
closePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
closeQuietly(Closeable) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
CLOSERT - Variable in class gov.nih.mipav.model.algorithms.CVODES
closest_power_of_2(int[], int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
ClosestIterator - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
ClosestIterator(StaticGrid, PointDistanceFunctor) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
closestPlanePointIndex(Point3f, int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: For the plane, all vertices have z-value set to zero.
closestPlanePointIndex(PickRecord) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: For the plane, all vertices have z-value set to zero.
closeVOI() - Method in class gov.nih.mipav.view.ViewJPopupVOI: Sets a POLYLINE VOI to closed CONTOUR(changes from polyline to polygon).
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
CLOSING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
closingByReconstructionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
clr - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
clr_const - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
clr_noise - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
clrBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
clrBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
clust() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
clust_invert(double[][], int, double[], int[], int[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
CLUSTER_DIAG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
CLUSTER_FULL - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
CLUSTER_JACOBI - gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType
cluster_null - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
cluster_null_nodes(int[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck: ------------------------------------------------------------------ Null nodes are nodes with null probability and are not merged by AIB.
CLUSTER_TRIDIAGONAL - gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType
clusterHierarchical(double[][], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
clusterImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
clustering_accuracy - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
clustering_classnum - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
clustering_eval_num - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
clustering_gnd - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
clusterMessageVerboseLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
clw_rotate_about_source() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
clw_rotate_about_target() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
cm - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
cm - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
cm2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
cmap - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
cmap - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
cmaskn(double[], double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
cMassX - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: X coordinate value of the center of mass for the image.
cMassY - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Y coordinate value of the center of mass for the image.
cMassZ - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Z coordinate value of the center of mass for the image.
cmbFilter - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
cmd - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams
cmdLineArguments - Variable in class gov.nih.mipav.view.ViewUserInterface: String holding the command line arguments for data provenance usage.
cmdLineFloat - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
cmdLineFloat() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineFloat
cmdLineFloat(float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineFloat
cmdLineInt - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
cmdLineInt() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineInt
cmdLineInt(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineInt
cmdLineParse(int, String[], String[], int, cmdLineReadable[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
cmdLineParse(int, String[], String[], int, cmdLineReadable[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
cmdLinePoint3D - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
cmdLinePoint3D() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLinePoint3D
cmdLinePoint3D(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLinePoint3D
cmdLinePoint3D(Point3D) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLinePoint3D
cmdLineReadable - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
cmdLineReadable() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineReadable
cmdlines - Variable in class gov.nih.mipav.model.file.FileInfoMGH
cmdlines - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
cmdLineString - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
cmdLineString() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineString
cMeans2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
cMeans2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
cMeans3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: cMeans3.
cMeans3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
cmop - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
cmor(double[], double[], double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
CMOR - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
cMoveRq - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: Move request object.
cMoveRsp - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: Move response object.
CMP - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: View Mode Composite Constant:
CMP_CUBE_GT(SIFT3D.Image, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_CUBE_LT(SIFT3D.Image, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_CUR_GT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_CUR_LT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_NEXT_GT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_NEXT_LT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_PREV_GT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_PREV_LT(SIFT3D.Image, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CMP_SUR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: View Mode Composite-Surface Constant:
cmpadd(double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Takes two arrays representing one real and one imaginary part, and adds two arrays representing another complex number and returns two arrays holding the complex sum.
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
cmplx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
CMPMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Invoke the composite rendering mode.
CMPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Display the volume in Composite mode.
CMPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Change to the Composite mode pixel shader program.
CMPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
CMPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Display the volume in Composite mode.
cmpmul(double[], double[], double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Takes 2 arrays, ar and ai representing one real and one imaginary part, and multiplies it with br and bi, representing a complex number and returns the complex product
cmprlb(int, int, double[], double[], double[][], double[][], double[][], double[][], double[], double[], double[], double[], int[], double, int, int, int, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
CMTimeEpoch - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
CMTimeFlags - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
CMTimeScale - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
CMTimeValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
cmyk_yk_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
cmyk_yk_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
CMYK_YK_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
cn - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Cn - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
Cn - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
CN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
CN - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
cnbr_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.cnbr_t
cnbrpool - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
CNCI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
CNDPLT(boolean[], double[], double[], double[], double, String[], String[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
cnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Cnorm - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
cnst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
cNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
cNum - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: or if the source image is to be replaced.
co - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cO2Percent - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
COARG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
coarse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value text field.
coarse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
coarseAngle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: The coarse angle step to use in each dimension when registering the original image against the flipped image.
coarseCostFunction(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarseCostFunctionCommit(double, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarseGradient(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarseGradientParameters() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarseLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value label.
coarseLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
coarseLocalRegionCenter - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarsenessCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
coarsenessThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: coarsenessThreshold must be <= 1.0.
coarsenessThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: coarsenessThreshold must be <= 1.0.
CoarsenTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
CoarsenTo - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
coarseNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
coarseNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
coarseNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
coarseNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
coarseNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
coarseNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
coarseNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
coarseNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
coarseOptimize(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
coarsePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
coarsePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarsePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarsePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
coarsePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarsePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarsePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
coarsePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarsePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarser - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
coarseRate - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Coarse and fine sampling parameters.
coarseRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
coarseRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
coarseRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
coarseRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
coarseRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
coarseRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
coarseRateTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
coarseRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Coarse and fine sampling parameters.
coarseRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Coarse and fine sampling parameters.
coarseRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Coarse and fine sampling parameters.
coarseRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Coarse and fine sampling parameters.
coarseRateX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
coarseRateY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
coarseRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
coarseRateZ - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
coarseRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
coarseRateZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
coarseValue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value.
coarseValue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
cod - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: If cod == 1 --> there was a COD marker for the present tile
cod_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: output file format 0: PGX, 1: PxM, 2: BMP
cod_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: output file format 0: PGX, 1: PxM, 2: BMP
code - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
code - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
code - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
code - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
CODE_DOUBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT16_S - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT16_U - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT32_S - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT32_U - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT8_S - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_INT8_U - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_RATIONAL_S - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_RATIONAL_U - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_SINGLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_STRING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
CODE_UNDEFINED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
codeline - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
codeline - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
codes - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable
codes - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable
codestream_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: codestream's size
codeStrInfoOff - Variable in class gov.nih.mipav.model.file.FileJP2
codeStrInfoOn - Variable in class gov.nih.mipav.model.file.FileJP2
coef - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
coef - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
COEF_APPROX - gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient
coef_arrays - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_d_coef_controller
coef_arrays - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
coef_bits - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
coef_bits_latch - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
COEF_DETAIL - gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient
coef_limit - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
coef0 - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
coef0 - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
coef0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
coef0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
coeff - Variable in class gov.nih.mipav.model.structures.RealPolynomial
coeff(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix
Coefficient(int) - Constructor for enum gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient
coefficientCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
coefficients - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Number of coefficients.
coefficients - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
coeffs_ok13or23(HashMap<String, double[][][]>) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coeffs_ok2(HashMap<String, double[][]>) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coeffs_ok3(HashMap<String, double[][][]>) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coff - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < coordinates of top-left of each patch.
coff - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < value of curz that will form a new patch.
coff - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
cog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Center of Gravity :
COG() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Calculates the center of gravity of the shape (actually it's the center of the centroid).
COG(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Calculates the center of gravity of the shape (actually it's the center of the centroid).
coherenceEnhancingDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
coherenceEnhancingDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
coherenceEnhancingDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
coherenceEnhancingDiffusionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Coherence Enhancing Diffusion filter.
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
coherenceEnhancingDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
coherenceEnhancingDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
coherenceEnhancingDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
coherenceEnhancingDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
COIF - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
coif_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif10_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif11_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif12_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif13_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif14_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif15_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif16_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif17_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
coif9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
CoilIDField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
coilName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
coilName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
coilName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 362 17 characters.
coilType - Variable in class gov.nih.mipav.model.file.FileGESigna4X
coilType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
coilType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 360.
col - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
col - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
col - Static variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
col(libdt.Mat, int) - Method in class gov.nih.mipav.model.algorithms.libdt
Col(int, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Return the i-th column of the matrix.
COL - gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
col_begin_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
col_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
col_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
col_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
col_end_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
col_sum(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
col_to_sup - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
col_to_sup - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
col1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
col2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
col3 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
col4 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
COLAMD - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
COLAMD_AGGRESSIVE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_C(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Colamd_Col() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col
colamd_debug - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_DEFRAG_COUNT - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_DENSE_COL - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_DENSE_ROW - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_A_not_present - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_A_too_small - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_col_length_negative - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_internal_error - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_ncol_negative - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_nnz_negative - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_nrow_negative - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_out_of_memory - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_p_not_present - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_p0_nonzero - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_ERROR_row_index_out_of_bounds - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_INFO1 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_INFO2 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_INFO3 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_KNOBS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_MAIN(int, int, int, int[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_OK - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_OK_BUT_JUMBLED - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_R(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_recommended(int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Colamd_Row() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Row
COLAMD_set_defaults(double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_STATS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
COLAMD_STATUS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
colbeg - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
colEMFrame - Variable in class gov.nih.mipav.view.JFrameHistogram: reference to the colocalization frame for updatng the image.
colEMFrame - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
colend - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
colind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
colind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
colLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
COLLAPSE_COLUMNS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
COLLAPSE_ROWS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
collapseAlltoSinglePaint(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: This method is provided for the user to convert a masked area back to a painted area.
collapseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Button that allows user to collapse masks/paint to single value
collapseCausesFolding(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: A look-ahead test to determine if the requested edge collapse will cause the mesh to fold over itself.
collapseEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: The internal edge collapse function.
collapseImage - Variable in class gov.nih.mipav.model.file.FileGESigna4X
collapseImage - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
collapsePhiLattice(double[], int[], double[], int[], double, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
collapsePhiLattice(double[], int[], double[], int[], double, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
collectFileInfos(int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Gets the fileInfos from the specified position.
collide(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
colNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
colocalizationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
colocalizationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
colocalizationEMFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
colocalizationRegFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
colocCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
colocIntensity1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
colocIntensity1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
colocIntensity1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
colocIntensity2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
colocIntensity2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
colocIntensity2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
colocSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: for all pixels with values either below color1 for buffer or below a*color1 + b for secondBuffer.
colocSize - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
colocSize - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
COLON - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
color - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
color - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
color - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.GlyphLabel
color - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel
color - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
color - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
color - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
color - Variable in class gov.nih.mipav.model.file.FileInfoCZI
color - Variable in class gov.nih.mipav.model.structures.VOI: Indicates the color or the VOI.
color - Variable in class gov.nih.mipav.view.ColorIcon: DOCUMENT ME!
color - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: re f to Color array
color - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
color - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: array of colors to use for the labels.
color - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Color of burn.
color - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
color - Variable in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
color - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Color of the paint.
Color - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Default color for the color transfer function is white:
COLOR - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
color_buf8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
color_buf9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
color_cmyk_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
color_convert - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
color_esycc_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
COLOR_FLOW_DOPPLER - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality color flow doppler.
COLOR_FLOW_DOPPLER - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality color flow doppler.
COLOR_MAP - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
COLOR_MAP - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
COLOR_MAP - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
COLOR_MAP - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
COLOR_PRESENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
COLOR_PRESENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
color_quantize - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
color_quantize - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
color_quantize(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
color_quantize(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
COLOR_QUANTIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
color_quantize3(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
color_quantize3(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
COLOR_QUANTIZE3 - Static variable in class gov.nih.mipav.model.file.libjpeg
color_space - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t: color space: sRGB, Greyscale or YUV
color_standard_weights(ModelImage, int[], int[][], Vector<Integer>, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
color_standard_weights_PW(ModelImage, int[], int[][], Vector<Integer>, int, int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
color_sycc_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
color_transform - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
color0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
color1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
color1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
color1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
color1 - Variable in class gov.nih.mipav.model.file.FileBioRad: LUT1 color status.
color1 - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
color2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
color2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
color2 - Variable in class gov.nih.mipav.model.file.FileBioRad: LUT2 color status.
color2 - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
color3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
color3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
color4 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
colorAnnotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
colorAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Counts the annotations and colors them based on the number of annotations.
colorAnnotations(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
colorAnnotations(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
colorArray - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
colorBackground - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
colorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: button to bring up color chooser.
colorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
colorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
colorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Allows VOI color to be selected
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Color button, checkBox On/Off.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Color button for changing bounding box color.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The color button, which calls a color chooser.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point color button.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Color button, checkBox On/Off.
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Color button for changing color.
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Color button for changing bounding box color.
colorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The color button, which calls a color chooser.
colorButtonA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for the arbitrary clipping plane frame.
colorButtonBackground - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Color button for changing z color.
colorButtonBackground - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Color button for changing z color.
colorButtonBackground - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Color button for changing z color.
colorButtonBackground - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Color button for changing z color.
colorButtonBackground - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Color button for changing z color.
colorButtonStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for the static clipping plane frame.
colorButtonStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for the static clipping plane frame.
colorButtonX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for X clipping plane frame.
colorButtonXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for X clipping plane frame.
colorButtonY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for Y clipping plane frame.
colorButtonYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for Y clipping plane frame.
colorButtonZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for Z clipping plane frame.
colorButtonZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color button for Z clipping plane frame.
colorChanged(Color) - Method in interface gov.nih.mipav.model.structures.event.VOIListener
colorChanged(Color) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter
colorChanged(Color) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter
colorChanged(Color) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter
colorChanged(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
colorChannelPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: for processing color images
colorChannelPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: DOCUMENT ME!
colorChannelPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: color chooser to select text color.
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
colorChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Internal dialog box for selecting VOI color
colorChooser - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: ColorChooser for changing graph colors.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Color choose dialog reference.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Color chooser for when the user wants to change the color of the surface.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Color chooser when the user changes the color of the surface.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Color chooser dialog.
colorChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Reference to the color chooser.
colorChooser - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
colorChooser - Variable in class gov.nih.mipav.view.ViewJFrameImage: Reference to the color chooser.
colorChooser - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Color chooser to use when selecting paint color.
colorChooser - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The LUT color chooser.
colorcount - Variable in class gov.nih.mipav.model.file.libjpeg.box
colorData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation
colorDialog - Variable in class gov.nih.mipav.view.ViewJColorChooser: Main color dialog for display
colorDialog - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
colorDomain - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent
ColorEncoding(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorEncoding
colorFactor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: 1 for black and white, 4 for color.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: 1 for black and white, 4 for color.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: 1 for black and white, 4 for color.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: 1 for black and white, 4 for color.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: 1 for black and white, 4 for color.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: When the image is a color image, the colorFactor is set to 4, otherwise it defaults to 1.
colorFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: DOCUMENT ME!
colorFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
colorFilterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Either COMPONENT_FILTER, VECTOR_MAGNITUDE_FILTER, VECTOR_DIRECTION_FILTER, or ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER For a vector filter the new red, green, and blue will all come from the same pixel.
colorFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
colorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
colorGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
colorHistogramBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
ColorIcon - Class in gov.nih.mipav.view: This is an icon which is a block of color with bounds specified in the constructor.
ColorIcon() - Constructor for class gov.nih.mipav.view.ColorIcon: Constructor Makes a color icon with the default color of gray and default width and height values of 50 and 15, respectively.
ColorIcon(Color, int, int) - Constructor for class gov.nih.mipav.view.ColorIcon: Constructor Makes a color icon with the specified color, width, and height.
colorIm_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
colorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Flag to indicate if the source image is color.
colorindex8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
colorindex9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
colorInter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
ColorInterpolation(double[][][][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation
colorization - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
colorLabel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Color label.
colorLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The color button label.
colorLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point color label.
colorLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Color label.
colorLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The color button label.
ColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.ColorListener
colormap8 - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
colormap9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
colorMapA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
colorMapB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
colorMapGMA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
colorMapGMB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
ColorMapImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
ColormapLabel(String, ContourPlot.ColorMap, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
ColormapLabel(String, ContourPlot.ColorMap, boolean, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
ColormapLabel(String, ContourPlot.ColorMap, boolean, int, double[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
colormapLabels - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
colorMask - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Color flags.
colorMask - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Color flags.
colorMask - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase: Color flags.
colorMask(libdt.Mat[], libdt.Mat[], libdt.Mat, int) - Method in class gov.nih.mipav.model.algorithms.libdt
colorMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
colorNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Current Node to color.
colorOf(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Compute the contribution of color from this light on the specified material with specified vertex properties.
colorOf(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightAmbient: Compute the contribution of color from this light on the specified material with specified vertex properties.
colorOf(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: Compute the contribution of color from this light on the specified material with specified vertex properties.
colorOf(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Compute the contribution of color from this light on the specified material with specified vertex properties.
colorOf(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Compute the contribution of color from this light on the specified material with specified vertex properties.
ColorOperations() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations
colorPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Button for changing the color of the paint.
colorPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to select the color of the paint used.
colorPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
colorPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
colorPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
colorParametersA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
colorParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
colorRangePanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
colorRangePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
colorRangeSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
colorRangeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
colorRangeTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
colorRangeTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
colors - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
colors - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
colors - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxFrame: Save the colors (typically the same for all vertices )of the bounding box.
colors - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: Color - can change if user chooses different one.
colors - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
colors - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
colors3f - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Holds colors for vertices.
colorScheme - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
colorScheme - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
ColorScheme(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme: Constructor for defining a new color scheme.
ColorScheme(Color, Color, Color, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme: Constructor for defining a new color scheme.
colorSegmentInRGB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
colorSegmentInRGB - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
colorSpace - Variable in class gov.nih.mipav.model.file.FileSVS
colorSpace - Variable in class gov.nih.mipav.model.file.FileTiff
colorSpaceGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
ColorSpaceType(long) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType
colorSpacing - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
colorsPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
colorsPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
colorsPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
colorsPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
colorsPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Number of colors present.
colorTable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
colorText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
colorToString(Color) - Method in class gov.nih.mipav.view.ShortCutted: Converts color to string.
colorTrigger - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
colorUsed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
colorVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: The current color of the selected VOI
colorWeighting - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
colorWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
colorWheel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Color Wheels *
colorWheel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Color Wheels *
ColorWheel - Class in gov.nih.mipav.view
ColorWheel(String, int) - Constructor for class gov.nih.mipav.view.ColorWheel: constructor
colorWheelChoicesPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
colorWheelChoicesPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
colorWheelComboBox - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: color wheel choices combo box *
colorWheelComboBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: color wheel choices combo box *
colorWheelPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
colorWheelPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
colPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
ColPerm - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
COLPERM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
colperm_t(int) - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
colpermNum - Variable in enum gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
colpermNum() - Method in enum gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
COLPR - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
colproj - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
colptr - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
colRegFrame - Variable in class gov.nih.mipav.view.JFrameHistogram: reference to the colocalization frame for updatng the image.
colRegFrame - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowBlockStructure
cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix
cols - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
cols - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
COLSC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
colSpliterator() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a Spliterator that guarantees that each split will at least cover an entire column of the Img.
ColSpliterator(int, int, int, int, Supplier) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator: Creates a new RowSpliterator for iterating the pixels in the specified area.
colText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
column - Variable in class gov.nih.mipav.model.structures.TableSorter.Directive: DOCUMENT ME!
Column(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
column_bounds_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
columnButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
columnComparators - Variable in class gov.nih.mipav.model.structures.TableSorter
columnDerivativeMask5By5(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
columnDerivativeMask7By7(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
columnKeyTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
columnNames - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
columnNames - Variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
columnNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
columns - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
columns - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
columns - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
Columns() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
ColumnVectorX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ColumnVectorY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ColumnVectorZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
COM - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: JPEG comment segment identifier for comments.
COM - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
COM - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
comAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: DOCUMENT ME!
comAlgoRGB - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: DOCUMENT ME!
combine(Point3f[], Point3f[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
combined2D3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
combined2D3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
Combined2ShapeParam(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Converts combined model parameters to shape parameters.
Combined2TexParam(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Converts combined model parameters to texture parameters.
combinedCRC - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
CombinedMovie(String, int, double, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Generates movies files showing each mode of combined shape and texture variation by adjusting the each mode of variation to: +/- 'range' times in 2*'step'+1 steps.
CombinedPCA() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the combined PCA.
comboBox2or3D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: GUI components.
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
comboBoxCostFunct - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
comboBoxDOF - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
comboBoxDTI_Algorithm - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: menu for selecting dti algorithm:
comboBoxEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
comboBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
comboBoxFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
comboBoxFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
comboBoxFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
comboBoxHeightDiv - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
comboBoxHigh - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Combo box with image names for choosing test image.
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Combo box with image names for choosing test image.
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Combo box with image names for choosing base image.
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Combo box with image names for choosing base image.
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: DOCUMENT ME!
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVABRA: drop-down box for selecting available images
comboBoxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
comboBoxImage - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
comboBoxImageA - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
comboBoxImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
comboBoxImageBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
comboBoxImageGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
comboBoxImageRed - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogReslice: Used for choosing interpolation.
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: DOCUMENT ME!
comboBoxInterp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
comboBoxInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
comboBoxInterpolation - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
comboBoxKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
comboBoxKernelClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
comboBoxKernelErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
comboBoxKernelOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
comboBoxKernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
comboBoxKernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
comboBoxKernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
comboBoxKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel
comboBoxLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
comboBoxLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
comboBoxLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxLow - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
comboBoxMaximumSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
comboBoxModeX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxModeY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxModeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxName - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
comboBoxName - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
comboBoxName - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
comboBoxNameX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxNameY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxNameZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxOperator - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: combo box of operations
comboBoxOperator - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: operator combo box
comboBoxOperator - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
comboBoxOperator - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
comboBoxOpt - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
comboBoxOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
comboBoxOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
comboBoxOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
comboBoxOrderX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxOrderY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxOrderZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxOrientX - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
comboBoxOrientY - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
comboBoxOrientZ - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
comboBoxOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
ComboBoxRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer: Creates a new ComboBoxRenderer object.
ComboBoxRenderer2() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer2: Creates a new ComboBoxRenderer2 object.
comboBoxSaveImgMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Whether to save .img files as selected by dialog or always as analyze, interfile, or nifti.
comboBoxSaveMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Whether to save as selected by dialog or always as analyze, interfile, or nifti.
comboBoxSaveMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Whether to save as selected by dialog or always as analyze, interfile, or nifti.
comboBoxSaveMncMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Whether to save .mnc files as selected by dialog or always as minc1 or minc2.
comboBoxScaleMax - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
comboBoxSearchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
comboBoxSearchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
comboBoxSearchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
comboBoxSearchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
comboBoxSearchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
comboBoxStartLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
comboBoxSuppression - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
comboBoxTalTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
comboBoxTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
comboBoxUnitOfMeasure1 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
comboBoxUnitOfMeasure1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
comboBoxUnitOfMeasure2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
comboBoxUnitOfMeasure3 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
comboBoxUnitOfMeasure3 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
comboBoxUnitOfMeasure3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
comboBoxUnitOfMeasure4 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
comboBoxUnitOfMeasure4 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
comboBoxUnitOfMeasure4 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
comboBoxUnitOfMeasure5 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
comboBoxUnitOfMeasure5 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
comboBoxWidthDiv - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
comboConnectType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
comboDilateDimType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
comboErodeDimType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
comboInterpType - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
comboLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The polygon mode combo box label.
comboLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The polygon mode combo box label.
comboOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
comboRegType - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
comboResType - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
comboStructureType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
comboTarget - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
comboTemplate - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
comboX - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
comboY - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
comboZ - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
CombVert(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Composes the matrix of Top and Bottom (on top of each other).
comelp(double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Ported from Computation of Special Functions by Shanjie Zhang and Jianming Jin Computes complete first and second elliptic integrals with a real modulus 0 <= mod <= 1, mod is the modulus.
COMM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
COMM_DIAG - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
COMM_DOWN - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
COMM_RIGHT - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
commaButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
command - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument: The case-independent form of the command
command - Variable in enum gov.nih.mipav.view.Argument.StaticArgument: The case-independent form of the command
COMMAND - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: This field distinguishes the DIMSE-C operation conveyed by this message.
COMMAND_BOGUS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CEchoRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CEchoRSP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CFindCancelRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CFindRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CFindRSP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CMoveCancelRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CMoveRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CMoveRSP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CStoreRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
COMMAND_CStoreRSP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
CommandLineParser - Interface in gov.nih.mipav.view: A MIPAV command line parser reads the arguments provided to MIPAV at the command line.
comment - Variable in class gov.nih.mipav.model.file.FileInfoCZI
comment - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: comment
comment(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
comment(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
COMMENT_CHAR - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
comments - Variable in class gov.nih.mipav.model.file.FileInfoZVI
comments - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
comments - Variable in class gov.nih.mipav.model.structures.VOI
comments - Variable in class gov.nih.mipav.model.structures.VOIText
commentStr - Variable in class gov.nih.mipav.model.file.FileInfoTMG: DOCUMENT ME!
commitCount - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
commitGrow(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Tells the dialog to commit the current set of region grows and prepare for another set region grows, or the closing of the dialog.
commitMask(int, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Replace intensities in the image using painted mask.
commitMask(int, boolean, boolean, Vector<Integer>, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Replace intensities in the image using painted mask.
commitMask(int, boolean, boolean, Vector<Integer>, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Replace intensities in the image using painted mask.
commitMask(ModelImage, boolean, boolean, Vector<Integer>, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Replace intensities in the image using painted mask.
commitPaintToMask() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Creates a new short image from the paint mask.
commitPaintToMask(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Converts the paint to a mask.
commitPaintToUbyteMask() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Creates a new ubyte image from the paint mask.
common - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem
CommonEdge(OctNode, int, OctNode, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
commonMapping - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: If true, map all colors based on image min and max.
commonMapping - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: If true, map all colors based on image min and max.
commonMapping - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
commonMapping - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
CommonOptionsAreValid(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
commonSet(String, String) - Static method in class gov.nih.mipav.model.file.FilenameSorter: This method determines whether two String objects have the same characters up to the beginning index of the last numerical sequence of numerals.
comp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
comp - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
comp - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: DOCUMENT ME!
comp - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay
COMP_A - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
COMP_A - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
COMP_B - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
COMP_B - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
COMP_GM_A - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
COMP_GM_A - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
COMP_GM_B - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
COMP_GM_B - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
comp_info - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
comp_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Temporary values for Tile parts, initialised in pi_create_encode
COMPACT - gov.nih.mipav.model.algorithms.libdt.Verbose_mode
compact_support - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
compactify() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Use exactly the amount of array storage for the current elements in the set.
compactify() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Use exactly the amount of array storage for the current elements in the set.
compactify() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Use exactly the amount of array storage for the current elements in the set.
compactify() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Use exactly the amount of array storage for the current elements in the set.
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
compactness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
COMPARABLE_COMPARATOR - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
compare(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
compare(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NoiseLevel.rowComparator: DOCUMENT ME!
compare(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT.ikeysComparator: DOCUMENT ME!
compare(AlgorithmEfficientWatershed.indexValueItem, AlgorithmEfficientWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueComparator: DOCUMENT ME!
compare(AlgorithmFRAP.distanceIntensityItem, AlgorithmFRAP.distanceIntensityItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityComparator: DOCUMENT ME!
compare(AlgorithmGraphBasedSegmentation.edge, AlgorithmGraphBasedSegmentation.edge) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edgeComparator: DOCUMENT ME!
compare(AlgorithmHillClimbingWatershed.indexValueItem, AlgorithmHillClimbingWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueComparator: DOCUMENT ME!
compare(AlgorithmKMeans.positionWeightItem, AlgorithmKMeans.positionWeightItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightComparator: DOCUMENT ME!
compare(AlgorithmLLE.distanceIndexItem, AlgorithmLLE.distanceIndexItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexComparator: DOCUMENT ME!
compare(AlgorithmScaleSaliency.sixItems, AlgorithmScaleSaliency.sixItems) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItemsComparator: DOCUMENT ME!
compare(AlgorithmSequentialScanningWatershed.indexValueItem, AlgorithmSequentialScanningWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueComparator: DOCUMENT ME!
compare(AlgorithmShortestPathWatershed.indexValueItem, AlgorithmShortestPathWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueComparator: DOCUMENT ME!
compare(AlgorithmSplitAndMergeWatershed.indexValueItem, AlgorithmSplitAndMergeWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueComparator: DOCUMENT ME!
compare(AlgorithmUnionFindWatershed.indexValueItem, AlgorithmUnionFindWatershed.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueComparator: DOCUMENT ME!
compare(CeresSolver.Cell, CeresSolver.Cell) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CellLessThan
compare(CeresSolver.CompressedRowJacobianWriter.indexintintItem, CeresSolver.CompressedRowJacobianWriter.indexintintItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintComparator
compare(CeresSolver.indexValueItem<Vertex>, CeresSolver.indexValueItem<Vertex>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.VertexTotalOrdering
compare(CeresSolver2.indexArrayArrayItem, CeresSolver2.indexArrayArrayItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayComparator
compare(CeresSolver2.indexArrayItem, CeresSolver2.indexArrayItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayComparator
compare(CeresSolver2.indexIntegerdoubleArrayItem, CeresSolver2.indexIntegerdoubleArrayItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayComparator
compare(CeresSolver2.indexRowColItem, CeresSolver2.indexRowColItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.RowColLessThanComparator
compare(CeresSolver2.weighted_edgesItem, CeresSolver2.weighted_edgesItem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesComparator
compare(CopyMoveAttackDetection2.Block, CopyMoveAttackDetection2.Block) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.BlockComparator
compare(AlgorithmHurstIndex.DistanceIntensity, AlgorithmHurstIndex.DistanceIntensity) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensityComparator
compare(AlgorithmRiceWaveletTools.EigenvalueComplex, AlgorithmRiceWaveletTools.EigenvalueComplex) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplexComparator
compare(BiorthogonalWavelets.realImaginaryItem, BiorthogonalWavelets.realImaginaryItem) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryComparator: DOCUMENT ME!
compare(BM3D.indexValueItem, BM3D.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueComparator: DOCUMENT ME!
compare(PseudoPolarFourierTransform.indexValueItem, PseudoPolarFourierTransform.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueComparator: DOCUMENT ME!
compare(indexValue, indexValue) - Method in class gov.nih.mipav.model.algorithms.indexValueComparator: DOCUMENT ME!
compare(libdt.indexValueItem, libdt.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.libdt.indexValueComparator: Sorts in descending order
compare(NelderMead.point_t, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead.pointComparator: DOCUMENT ME!
compare(NonnegativeMatrixFactorization.indexRowItem, NonnegativeMatrixFactorization.indexRowItem) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowComparator: DOCUMENT ME!
compare(NonnegativeMatrixFactorization.indexValueItem, NonnegativeMatrixFactorization.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueAscendingComparator
compare(NonnegativeMatrixFactorization.indexValueItem, NonnegativeMatrixFactorization.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueComparator: DOCUMENT ME!
compare(NonnegativeMatrixFactorization.indexValueItem, NonnegativeMatrixFactorization.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueDescendingComparator
compare(SchwarzChristoffelMapping.indexValueItem, SchwarzChristoffelMapping.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueComparator: DOCUMENT ME!
compare(SIFTImageSimilarity.DMatch, SIFTImageSimilarity.DMatch) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatchComparator
compare(SIFTImageSimilarity.KeyPoint, SIFTImageSimilarity.KeyPoint) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeypointComparator
compare(StochasticForests.indexValueItem, StochasticForests.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueComparator
compare(StochasticForests.indexValueItem, StochasticForests.indexValueItem) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueDescendingComparator
compare(FileDicomKey, FileDicomKey) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CompareGroup
compare(FileDicomKey, FileDicomKey) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
compare(FileIO.LinkedNum, FileIO.LinkedNum) - Method in class gov.nih.mipav.model.file.FileIO.LinkedComparator
compare(FileUtility.nameSliceItem, FileUtility.nameSliceItem) - Method in class gov.nih.mipav.model.file.FileUtility.nameSliceComparator: DOCUMENT ME!
compare(FileVOI.VOISortItem, FileVOI.VOISortItem) - Method in class gov.nih.mipav.model.file.FileVOI.VOIComparator: DOCUMENT ME!
compare(VOIContour.positionItem, VOIContour.positionItem) - Method in class gov.nih.mipav.model.structures.VOIContour.positionLowerComparator: DOCUMENT ME!
compare(VOIContour.positionItem, VOIContour.positionItem) - Method in class gov.nih.mipav.model.structures.VOIContour.positionUpperComparator: DOCUMENT ME!
compare(JDialogFuzzyConnectednessSegmentation.labelIndexItem, JDialogFuzzyConnectednessSegmentation.labelIndexItem) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexComparator: DOCUMENT ME!
compare(JDialogPowerWatershed.labelIndexItem, JDialogPowerWatershed.labelIndexItem) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexComparator: DOCUMENT ME!
compare(Object, Object) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile.InstanceNumberComparator
compare(Object, Object) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile.InstanceNumberVolComparator
compare(Object, Object) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
compare(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Site
compare(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
compare(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial
compare(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
compare(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
compare(String, String) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject.KeyComparator
compare(String, String) - Method in class gov.nih.mipav.model.file.FilenameSorter
compare(String, String) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.StringUtil
compare(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.NumberComparator
compare(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: DOCUMENT ME!
compare(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.StringVecComparator: DOCUMENT ME!
compare(String, String) - Method in class gov.nih.mipav.view.ViewImageDirectory.ImageNameComparator: DOCUMENT ME!
compare(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.VertexDegreeLessThan
COMPARE_NAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
COMPARE_NAME_REV - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
COMPARE_TAG - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
COMPARE_TAG_REV - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
CompareBackwardDepths(Object, Object) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CompareBackwardPointerDepths(Object, Object) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
compareCutRes(int[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
compareDimensions(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Compares the dimensionality of two images.
compareDimensions(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Compares the dimensionality of two images.
CompareEulerToAngleAxis(double[], double[], String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompareEvaluations(int, int, double, double[], double[], double[][], double, double[], double[], double[][], String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompareEvaluations(int, int, double, double[], double[], double[], double, double[], double[], double[], String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompareForwardDepths(Object, Object) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CompareForwardPointerDepths(Object, Object) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CompareGroup() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CompareGroup
CompareMatrices(CeresSolver.SparseMatrix, CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
CompareMatrices(CeresSolver.SparseMatrix, CeresSolver.SparseMatrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
comparePolygon(poly, poly, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
compareTo(AlgorithmConstrainedELSUNCOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Necessary to implement so that list may be sorted.
compareTo(AlgorithmConstrainedOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Necessary to implement so that list may be sorted.
compareTo(AlgorithmRegELSUNCOAR35D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem: Necessary to implement so that list may be sorted.
compareTo(AlgorithmRegOAR35D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem: Necessary to implement so that list may be sorted.
compareTo(MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Necessary to implement so that list may be sorted.
compareTo(RegistrationUtilities.IndexedFloat) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.IndexedFloat
compareTo(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomKey
compareTo(FileDicomKey) - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey
compareTo(FileDicomTag) - Method in class gov.nih.mipav.model.file.FileDicomTag
compareTo(MetadataExtractor.Rational) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Compares two MetadataExtractor.Rational instances, returning true if they are mathematically equivalent (in consistence with MetadataExtractor.Rational.equals(Object) method).
compareTo(SliceSet) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet
compareTo(Object) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
compareTo(Object) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
compareTo(Object) - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Implementation required by the Comparable interface.
compareTo(Object) - Method in class gov.nih.mipav.model.structures.TableSorter.Row: DOCUMENT ME!
compareTo(Object) - Method in class gov.nih.mipav.util.DoubleDouble: Compares two DoubleDouble objects numerically.
compareTo(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
compareTo(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
compareTo(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
compareTo(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
compareTo(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
compareToLastNumericalSequence(String, String) - Static method in class gov.nih.mipav.model.file.FilenameSorter: The purpose of this method is to compare two filename strings on the basis of their last numerical sequence.
compareType - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
compC(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
compD(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
compData - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Buffer used to hold image data.
compE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: End value, initialised in pi_initialise_encode
compileReport(String, String, String, String, String, String, String) - Static method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Pulls system specifications from the user's computer and then compiles all appropriate fields together into a text document
compilerVersion - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: java's version
compImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
compins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
compins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
complementaryModulusUsed - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: k is the modulus k', the complementary modulus = sqrt(1 - k*k).
complete - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
complete - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane: When we're done drawing the rectangle, change the color.
complete() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
completed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: This flag will be set to true when the algorithm has completed.
completed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
completed_extra_passes - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
completed_passes - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
completed_passes - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_progress_mgr
CompleteRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
COMPLEX - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type complex type floats (2 x 64 bits per voxel).
COMPLEX - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of complex type floats (2 x 64 bits per voxel).
complex_add(QuarticEquation.complex_t, QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_add(QuarticEquationEP.complex_t, QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_cwt - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
complex_div(QuarticEquation.complex_t, QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_div(QuarticEquationEP.complex_t, QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_eq(QuarticEquation.complex_t, QuarticEquation.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_eq(QuarticEquationEP.complex_t, QuarticEquationEP.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_from_real(double) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_from_real(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_inverse(QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_inverse(QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_mult(QuarticEquation.complex_t, QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_mult(QuarticEquationEP.complex_t, QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_mult_real(double, QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_mult_real(DoubleDouble, QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_negate(QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_negate(QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_pow_real(QuarticEquation.complex_t, double) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_pow_real(QuarticEquationEP.complex_t, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
COMPLEX_ROOTS - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
COMPLEX_ROOTS - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_sqr_norm(QuarticEquation.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_sqr_norm(QuarticEquationEP.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
complex_sqrt(QuarticEquation.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
complex_sqrt(QuarticEquationEP.complex_t) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
COMPLEX_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type complex (float).
complex_t() - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquation.complex_t
complex_t() - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquationEP.complex_t
COMPLEX_VERSION - Static variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
COMPLEX_VERSION - Static variable in class gov.nih.mipav.model.algorithms.Hypergeometric
COMPLEX_VERSION - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
COMPLEX_VERSION - Static variable in class gov.nih.mipav.model.algorithms.Psi
complexArgument() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric: This is a port of subroutine HYGFZ from Computation of Special Functions by Shanjie Zhang and Jianming Jin, pp. 380-385.
complexArgument() - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic: From Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables edited by Milton Abramowitz and Irene A.
ComplexDisplay(String, int) - Constructor for enum gov.nih.mipav.view.Preferences.ComplexDisplay
complexDisplayChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: The available choices for displaying the numerical values of complex data
complexFactor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: 1 for real images, 2 for complex.
complexInverse - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
complexInverse - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
complexInverse - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
complexInverse - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: Whether a complex inverse FFT should be computed
complexInverseCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: Whether the inverse FFT should return a complex image (appropriate when only when source image is complex)
ComplexLinearEquations - Class in gov.nih.mipav.model.structures.jama
ComplexLinearEquations() - Constructor for class gov.nih.mipav.model.structures.jama.ComplexLinearEquations: Creates a new ComplexLinearEquations object.
complexPsi() - Method in class gov.nih.mipav.model.algorithms.Psi: This code is a port of the FORTRAN routine CPSI from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 59-60.
complexTestFirstKind() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
compLUT - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Lookup table of image.
compno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: component that identify the packet
compno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: component index
compno0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Resolution num start, Component num start, given by POC
compno1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num end,Resolution num end, Component num end, given by POC
component - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
component - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
COMPONENT_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
COMPONENT_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
component_id - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
component_index - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
component_needed - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
component0Precision - Variable in class gov.nih.mipav.model.file.FileJPEG2000
component1Precision - Variable in class gov.nih.mipav.model.file.FileJPEG2000
component2Precision - Variable in class gov.nih.mipav.model.file.FileJPEG2000
componentButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
componentDim - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The outer dimension of the histogram component we will be drawing.
componentDim - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The outer dimension of the histogram component we will be drawing.
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: componentHidden.
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Unchanged.
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Does nothing.
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
componentHidden(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJSlider.ViewJSliderResizeTool
componentHistogram - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Histogram component reference inside the JPanelHistoLUT.
componentHistogram - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The histogram LUT of the image.
componentId - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Needed for color images.
componentImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: component image *
componentImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: ViewJComponentDTIImage *
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Component image which this dialog belongs to.
componentImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: component image *
componentImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: ViewJComponentDTIImage *
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: with complex images.
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: with complex images.
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameImage: Object where DICOM image, ... is converted and displayed as a Java image
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Display of the MIP image.
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
componentImage - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: for both images displayed together.
componentImage1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
componentImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
componentImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
componentImageA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: for images to be displayed separately.
componentImageB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
componentImageColEM - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
componentImageColReg - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
componentImageDicom - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
componentImageVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
componentImageXY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Main component found in this frame.
componentImageXY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Component holding the texture of the XY plane image.
componentIndex - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Needed for color images.
componentLUT - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: Lookup table of image.
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Moves the currentRectangle to the location of the window on the screen to maintain the correct image
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: componentMoved.
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Unchanged.
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Does nothing.
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
componentMoved(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJSlider.ViewJSliderResizeTool
componentOpacityA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Reference to component opacity control A.
componentOpacityA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Reference to compoment opacity control A.
componentOpacityB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Reference to component opacity control B.
componentOpacityB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Reference to compoment opacity control B.
componentOpacityGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Reference to component opacity control A GM Rescale.
componentOpacityGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Reference to compoment opacity control A GM Rescale.
componentOpacityGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Reference to component opacity control B GM Rescale.
componentOpacityGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Reference to compoment opacity control B GM Rescale.
componentPostImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Resizes the currentRectangle to the dimensions of the changed window
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: componentResized.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Method called when a component resize event is generated.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Method called when a component resize event is generated.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Method called when a component resize event is generated.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Tells the component image that the size of the image panel has changed, then repaints the component image.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Does nothing.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Does not allow component to be smaller than MINIMUM_SIZE.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Resets the bounds of component graph if the window is resized.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Method called when a component resize event is generated.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Resizes frame and all components.
componentResized(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJSlider.ViewJSliderResizeTool
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: componentShown.
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Unchanged.
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Does nothing.
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
componentShown(ComponentEvent) - Method in class gov.nih.mipav.view.ViewJSlider.ViewJSliderResizeTool
componentsRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
componentsRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
componentVolImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Volume image object.
componentY - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
componentY - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
componentY - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
componentY - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
componentY - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ComposedLoss(CeresSolver.LossFunction, CeresSolver.Ownership, CeresSolver.LossFunction, CeresSolver.Ownership) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
composeString(byte[], byte) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Append newString to the end of oldString.
composite(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: The top level rendering call.
compositeMatrix - Variable in class gov.nih.mipav.model.structures.MatrixHolder: The composite matrix formed by multiplying (in reverse order) all stored matrices.
compositeMIP_DRR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
compound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Panel Border view.
compound - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
CompoundException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
CompoundException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
CompoundException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
CompoundExceptionTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.CompoundExceptionTest
compRanks(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
compress - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 120 image compression type for allocation.
compress - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
compressed - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Indicates if compression is used.
compressed - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Indicates if compression is used.
compressed - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
CompressedColumnScalarMatrixToBlockMatrix(int[], int[], Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
compressedData - Variable in class gov.nih.mipav.model.file.FileMetaImage
compressedDataSize - Variable in class gov.nih.mipav.model.file.FileMetaImage
compressedFile - Variable in class gov.nih.mipav.model.file.FileJPEG2000
CompressedList() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
CompressedList(int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
CompressedRowBlockStructure() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowBlockStructure
CompressedRowJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
CompressedRowSparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
CompressedRowSparseMatrix(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
CompressedRowSparseMatrix(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
CompressedRowSparseMatrixCreateBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixFromTripletSparseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixFromTripletSparseMatrixTransposed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixRandomMatrixOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
CompressedRowSparseMatrixSetUp(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestColumnNorm() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestDeleteRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestLeftMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestRightMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestScale() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestToCRSMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTestToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CompressedRowSparseMatrixTranspose() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
compressedStreamEOF() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
compressedTransformImage - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
compressedTransformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
CompressGraph(METIS.ctrl_t, int, int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
compression - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: DOCUMENT ME!
compression - Variable in class gov.nih.mipav.model.file.FileAvi: 0 for RGB 24 bit per pixel uncompressed 1 for RLE 8 bit per pixel compressed 1296126531 for Microsoft video 1 compression.
compression - Variable in class gov.nih.mipav.model.file.FileGESigna4X
compression - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
compression - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
compression - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 20 0 as is 1 retangular 2 packed 3 compressed 4 compressed and packed.
compression - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal
compression - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal
compression - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
compression - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
compression - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
Compression(int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
COMPRESSION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
COMPRESSION - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
COMPRESSION - Static variable in class gov.nih.mipav.model.file.FileSVS: Compression: 1 = no compression 2 = modified huffman 3 = CCITT-T4(FAX3) 4 = CCITT-T6(FAX4) 5 = LZW 6 = old JPEG 7 = JPEG 8 or 32946 = zlib 32773 = packbits 32809 = thunderscan RLE. 34676 = SGI Log Luminance RLE 34677 = SGI Log 24-bit packed
COMPRESSION - Static variable in class gov.nih.mipav.model.file.FileTiff: Compression: 1 = no compression 2 = modified huffman 3 = CCITT-T4(FAX3) 4 = CCITT-T6(FAX4) 5 = LZW 6 = old JPEG 7 = JPEG 8 or 32946 = zlib 32773 = packbits 32809 = thunderscan RLE. 34676 = SGI Log Luminance RLE 34677 = SGI Log 24-bit packed
COMPRESSION_BZIP2 - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates bzip2 compression of an image.
COMPRESSION_GZIP - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates gzip compression of an image.
COMPRESSION_NONE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates no compression.
COMPRESSION_ZIP - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates zip compression of an image.
compressionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Combo box to select compression.
compressionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
compressionBox - Variable in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Combo box to select compression.
compressionFactor - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
compressionFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
compressionQuality - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
compressionText - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
compressionType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
compressionType - Variable in class gov.nih.mipav.model.file.FileInfoBase: Used to indicate if the raw data was also compression (0 = no, 1 = zip).
compressionType - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
compressionType - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t: image components
comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: Components
comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
comps - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
compS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start value, initialised in pi_initialise_encode
comps_in_scan - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
compsInScan - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Number of components in scan; 1 for black and white, 4 for color.
compute() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
compute() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
compute(double) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
compute(double) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
Compute(Vector<double[]>, CeresSolver.ProblemImpl) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
compute_bar(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
compute_basis() - Method in class gov.nih.mipav.model.algorithms.LSCM.Homology
compute_block() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
compute_characteristic_features() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
compute_color(libjpeg.jpeg_decompress_struct, libjpeg.box, int) - Method in class gov.nih.mipav.model.file.libjpeg
compute_constants(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
compute_constants_col - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
compute_constants_first - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
compute_constants_indx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
compute_constants_y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
compute_edges(int[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
compute_f(double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
compute_input_derivatives(double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
compute_pca() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
compute_residual2D(double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
compute_residual3D(double[], double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
computeACPC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
computeAdvection(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Override this function to implement the desired advection for your level-set evolver.
computeAdvection(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: Compute the advection at pixel (x,y).
computeAdvection(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Override this function to implement the desired advection for your level-set evolver.
computeAdvection(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: Compute the advection at voxel (x,y,z).
computeAggregateStats(libdt.Estats, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
computeAlphaCircle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL computeAlpha function definition for the circle widgets:
computeAlphaSquare - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL computeAlpha function definition for the square widgets:
computeAlphaTriangle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL computeAlpha function definition for the triangle widgets:
ComputeAndCompareCovarianceBlocks(CeresSolver2.CovarianceOptions, double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ComputeAndCompareCovarianceBlocksInTangentOrAmbientSpace(CeresSolver2.CovarianceOptions, boolean, double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ComputeAndCompareCovarianceBlocksInTangentSpace(CeresSolver2.CovarianceOptions, double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
computeAttenuation(float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Compute the attenuation factor as an inverse quadratic polynomial.
computeAucSplit(double, double, double, double, double, double, int, Vector<Double>, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
computeBoundingBoxes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
computeBSplineImage(float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ComputeCandidatePointAndEvaluateCost() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
ComputeCanonicalViewsClustering(CeresSolver2.CanonicalViewsClusteringOptions, CeresSolver.WeightedGraph<Integer>, Vector<Integer>, HashMap<Integer, Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
ComputeCauchyPoint(CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
computeCenter(ModelImage, int, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Calculate the center of the sphere / ellipsoid.
ComputeCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the center of the surface.
computeCentroids2D(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Determines the centroids of each cluster given fuzzy membership values.
ComputeCentroids2D(float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: ComputeCentroids2D - Determine the centroids of each cluster given fuzzy membership values.
computeCentroids3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Determines the centroids of each cluster given fuzzy membership values.
ComputeCentroids3D(float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: ComputeCentroids3D - Determine the centroids of each cluster given fuzzy membership values.
computeChildDeathCounts(int, int, Vector<Double>, int[], int[], int[], int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
computeClosestPoint - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL support function definition for the triangle widgets:
ComputeClustering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ComputeClustering(CeresSolver2.CanonicalViewsClusteringOptions, CeresSolver.WeightedGraph<Integer>, Vector<Integer>, HashMap<Integer, Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
ComputeClusteringQualityDifference(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
ComputeClusterMembership(Vector<Integer>, HashMap<Integer, Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
computeConcordanceIndex(StochasticForests.Data, Vector<Double>, int, int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
computeConformalMapping() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: conformal mapping of mesh to plane and sphere, projection to cylinder.
computeConformalMapping() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: conformal mapping of mesh to plane and sphere, projection to cylinder.
computeContourBands(double[][], double[][], double[][], double, double, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Computes the contour bands from the grid samples of a bivariate function z(x,y).
computeContourBands(double[][], double, double, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Computes the contour bands from the grid samples of a bivariate function z(x,y)
with implicit integer valued (x,y) = (i,j).
The resulting triangles are solutions to the equation { (x,y) | iso1 < z(x,y) < iso2 } within the grid.
computeContourLines(double[][], double[][], double[][], double, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Computes the contour lines from the grid samples of a bivariate function z(x,y).
computeContourLines(double[][], double, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Computes the contour lines from the grid samples of a bivariate function z(x,y)
with implicit integer valued (x,y) = (i,j).
The resulting line segments are solutions to the equation { (x,y) | z(x,y)=iso } within the grid.
ComputeCovarianceSparsity(Vector<CeresSolver.Pair<double[], double[]>>, CeresSolver.ProblemImpl) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
ComputeCovarianceValues() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
ComputeCovarianceValuesUsingDenseSVD() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
computeCubicLagrangian(float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
computeCurvature(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Compute the product of length and curvature at the pixel (x,y).
computeCurvature(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Compute the product of length and mean curvature at the voxel (x,y,z).
computeCurvatures() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Compute the curvatures at each vertex.
computeCurvatureSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Override this function to implement the desired curvature speed for your level-set evolver.
computeCurvatureSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: Compute the curvature speed at pixel (x,y).
computeCurvatureSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection2: Compute the curvature speed at pixel (x,y).
computeCurvatureSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: Compute the curvature speed at pixel (x,y).
computeCurvatureSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Override this function to implement the desired curvature speed for your level-set evolver.
computeCurvatureSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: Compute the curvature speed at voxel (x,y,z).
computeCurvatureSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection3: Compute the curvature speed at voxel (x,y,z).
computeCurvatureSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: Compute the curvature speed at voxel (x,y,z).
COMPUTED_RADIOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality CR.
COMPUTED_RADIOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality CR.
COMPUTED_TOMOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality CT.
COMPUTED_TOMOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality CT.
computeDataSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Computes the datasize based on the type of buffer.
computeDataThreads - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
computedBlockCRC - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
computedCombinedCRC - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
computeDeathCounts(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
computeDefFieldCommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
computeDeformationFieldButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: button for computing the deformation field:
computeDimAndVoxel() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
computeDistance(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: compute distances within specified neighborhood size (size >= 1).
computeDistance(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: compute distances within specified neighborhood size (size >= 1).
computeDistances(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Computes the distances of vertex pairs for which an edge-path exists with at most iSize edges.
computeDistances(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Computes the distances of vertex pairs for which an edge-path exists with at most iSize edges.
computeDx(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
computeDx3D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
computeDy(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
computeDy3D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
computeDz(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
computeEdgeStrengths() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
computeElapsedTime() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Computes the elapased time as the difference between the start time and the current time (both of which are in milliseconds).
computeElapsedTime() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer: Computes the elapased time as the difference between the start time and the current time (both of which are in milliseconds).
computeElapsedTime(long) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Computes the elapased time as the difference between the start time and the current time (both of which are in milliseconds).
computeEll(libdt.Estats) - Method in class gov.nih.mipav.model.algorithms.libdt
computeEncode(int, int, int, byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Calculate the encoding table for the specified permutation.
computeEpiCommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
computeEpiCorrectionButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: button for applying the deformation field to the input 4D image
computeEpsilon() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
computeEpsilon(int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil
computeEpsilonX(int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil
computeEpsilonXY(int, int, int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil
computeEpsilonY(int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil
computeExtremes() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
computeExtremes() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
ComputeFilters() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
ComputeFrequencyResponse() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
computeFunction(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Evolution support.
computeFunction(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Evolution support.
computeGaussian2D(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Compute the value of the 2D gaussian at a point.
computeGaussian3D(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Computes the gaussian weights for a particular point.
ComputeGaussNewtonStep(CeresSolver.TrustRegionStrategyPerSolveOptions, CeresSolver.SparseMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
computeGeodesic(float, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Compute the Geodesic curve.
computeGeodesic(float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Compute the Geodesic curve.
computeGradient(float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: With given x, y, z point coordinate, compute the gradient magnitude and gradient direction
computeGradient(float, float, float, double[], double[], double[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
computeGradient(float, float, float, double[], double[], double[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
computeGradient(float, float, float, double[], double[], double[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
computeGradient(float, float, float, double[], double[], double[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
computeGradient(float, float, float, double[], double[], double[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
computeGradient(ModelImage, float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
computeGradient(ModelImage, float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
computeGradient(ModelImage, float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
computeGradient(ModelImage, float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
computeGradient(ModelImage, float, float, float, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
ComputeGradient(CeresSolver.SparseMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
computeGradientAtCenterPixel(double[][][]) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
computeGradients(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
computeHepticLagrangian(float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
computeHessianAtCenterPixel(double[][][]) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
ComputeHouseholderVector(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
computeIdealWindowSize() - Method in class gov.nih.mipav.view.ViewJFrameImage: private void computeIdealWindowSize() This method will enlarge or shrink the window size in response to the componentImage being zoomed.
computeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
computeImageBytes(float[], ModelRGB, RendererMapColor, JPanelVolumeOpacity) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData
computeImageBytes(float[], ModelRGB, RendererMapColor, JPanelVolOpacityRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Deprecated.
computeImageBytes(float[], TransferFunction) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Given an intensity volume and opacity map, fill in the byte and alpha values for each voxel.
computeImageBytes(float[], TransferFunction, ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Given an intensity volume, opacity map, and color map, fill in the byte red, green, blue, and alpha values for each voxel.
computeImpl(ModelImage, Vector<AlgorithmBRISK.KeyPoint>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
computeIntegralNormalizationFactor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: In order to map line integrals of image intensity to RGB colors where each color channel is 8 bits, it is necessary to make sure that the integrals are in [0,255].
computeIntegralNormalizationFactor(byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: In order to map line integrals of image intensity to RGB colors where each color channel is 8 bits, it is necessary to make sure that the integrals are in [0,255].
computeIntersect(Vector3f, Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Computes the intersection between two lines.
computeIntersections() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Compute the cube-plane intersection.
computeJ1(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
ComputeJacobian(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
ComputeJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
ComputeJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
ComputeJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
ComputeJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
ComputeJacobian(double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
ComputeJacobian(double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
ComputeJacobian(double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
computeKeypointsAndDescriptors(ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
computeKeypointsWithOrientations(SIFTImageSimilarity.KeyPoint, int, ModelImage, double, int, double, double) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
computeLaplacianSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Override this function to implement the desired Laplacian speed for your level-set evolver.
computeLaplacianSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Override this function to implement the desired Laplacian speed for your level-set evolver.
computeMagnitude(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
computeMaximum - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: When true, computes the maximum intensity projection.
computeMeanCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: mean curvature.
computeMeanCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: mean curvature.
computeMeanEdgeLength() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the average length of all the edges in the triangle mesh.
computeMeanEdgeLength() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Compute the average length of all the edges in the triangle mesh.
computeMeanEdgeLength() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Compute the average length of all the edges in the triangle mesh.
computeMeanEdgeLength(HashMap) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the average length of all the edges in the triangle mesh.
computeMedianIntensity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the median intensity of those voxels inside the initial ellipsoid.
computeMedianIntensityInitial() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the median intensity of those voxels inside the initial ellipsoid.
computeMemberships2D(float[], float[], float[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Determines the membership of each feature vector in each cluster.
ComputeMemberships2D(float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: ComputerMemberships2D - Determine membership of each feature vector in each cluster.
computeMemberships3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Determines the membership of each feature vector in each cluster.
ComputeMemberships3D(float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: ComputerMemberships3D - Determine membership of each feature vector in each cluster.
computeMinimum - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: When true, computes the minimum intensity projection.
computeNearestImage(double[], float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Transforms and resamples volume using nearest neighbor interpolation.
computeNewCenter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
computeNewExtents() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates and returns the new extents based on the source image and the list of slices to be removed.
computeNormalizedNormal(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
computeNormalLine(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, float, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: When the line segment is drawn, take the mid point, create the normal line across the mid point.
computeNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: A normal vector at a vertex is computed by averaging the triangle normals for all triangles sharing the vertex.
computeNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A normal vector at a vertex is computed by averaging the triangle normals for all triangles sharing the vertex.
computeNormals() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: compute vertex normals as averages of triangle normals.
computeNormals() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: compute vertex normals as averages of triangle normals.
computeNumberOfOctaves(int[]) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
computeParam() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: Compute the average gradient magnitude squared for the current image u(x,y,t).
computeParam() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: Compute the average gradient magnitude squared for the current image u(x,y,t).
computePermutationImportance() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
computePermutationImportance(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
computePilot(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_cut[][], String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
computePositions(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Compute the vertex positions for the four voxels in the current slice to be bilinearly interpolated.
computePrecisionRecall() - Method in class gov.nih.mipav.model.algorithms.libdt
computePredictionAccuracyInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
computePredictionAccuracyInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
computePredictionAccuracyInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
computePredictionAccuracyInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
computePredictionAccuracyInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
computePredictionError() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
computePredictionErrorInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
computePredictionErrorInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
computePredictionErrorInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
computePredictionErrorInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
computePredictionErrorInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
computeProcessors() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
computeProcessors() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
computeProcessors() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
computePropagationSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Override this function to implement the desired propagation speed for your level-set evolver.
computePropagationSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: Compute the propagation speed at pixel (x,y).
computePropagationSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection2: Compute the propagation speed at pixel (x,y).
computePropagationSpeed(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: Compute the propagation speed at pixel (x,y).
computePropagationSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Override this function to implement the desired propagation speed for your level-set evolver.
computePropagationSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: Compute the propagation speed at voxel (x,y,z).
computePropagationSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection3: Compute the propagation speed at voxel (x,y,z).
computePropagationSpeed(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: Compute the propagation speed at voxel (x,y,z).
computeQuinticLagrangian(float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
computeRadius(MjVector2f, MjVector2f, MjVector2f, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
computeRatios() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Computes the image scaling ratios.
computeRealBandwidths(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
computeRecords() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: All collapse information is known when this is called.
ComputeRecursiveIndependentSetOrdering(CeresSolver.Program, CeresSolver.OrderedGroups<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
ComputeReferenceSolution(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
computeRoots() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
ComputeSchurOrdering(CeresSolver.Program, Vector<CeresSolver.ParameterBlock>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
computeScores(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_cut[][], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
computeShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Compute the shape descriptor with roundness, compactness, aspectRatio, and eccentricity.
computeShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Compute the shape descriptor with roundness, compactness, aspectRatio, and eccentricity.
computeShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Compute VOI shape descriptors.
ComputeSingleLinkageClustering(CeresSolver2.SingleLinkageClusteringOptions, CeresSolver.WeightedGraph<Integer>, HashMap<Integer, Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
computeSpot(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Compute the attenuation due to the spot cone geometry.
ComputeStableSchurOrdering(CeresSolver.Program, Vector<CeresSolver.ParameterBlock>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
ComputeStep(CeresSolver.TrustRegionStrategyPerSolveOptions, CeresSolver.SparseMatrix, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
ComputeStep(CeresSolver.TrustRegionStrategyPerSolveOptions, CeresSolver.SparseMatrix, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
ComputeStep(CeresSolver.TrustRegionStrategyPerSolveOptions, CeresSolver.SparseMatrix, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy
ComputeSubspaceDoglegStep(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
ComputeSubspaceModel(CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
ComputeSubspaceStepFromRoot(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
computeSurfaceArea() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: surface area of the mesh (input mesh is closed, manifold).
computeSurfaceArea() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: surface area of the mesh (input mesh is closed, manifold).
ComputeSurfaceArea() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Calculate the surface mesh area.
ComputeSurfaceArea(TriMesh) - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Calculate the surface mesh area.
computeSurfaceImage(TriMesh, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
computeSurfaceImage(TriMesh, ModelImage, float, Vector3f, Vector3f) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
computeSurfaceMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Computes a volume mask of the triangle mesh surface.
computeSurfaceMask(BitSet, TriMesh, ModelImage, float, Vector3f, Vector3f, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
computeSurfaceMask(TriMesh) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Computes a volume mask of the triangle mesh surface.
computeSurfaceMask(TriMesh, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
computeSurfaceMask(TriMesh, ModelImage, float, Vector3f, Vector3f) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
computeSurvival(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
computeTalairachVoxelPosition(int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Computes the talairach grid voxel from a screen coordinate.
computeTextureWeights(double[][], double[][], double[][], int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
computeTImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
computeTime(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Compute the visitation time for an image element.
computeTime(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Compute the visitation time for an image element.
computeTimeExtremes() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Compute the minimum and maximum visitation times for the image elements.
computeTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Compute the time step for the next PDE solver update.
computeTLRC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
ComputeTraditionalDoglegStep(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
computeTreePermutationImportanceInThread(int, Vector<Double>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest.computeTreePermutationImportanceInThread
computeTriangleNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Compute the normal vector for each triangle as the normal vector to the plane containing the vertices associated with the triangle and considering the vertices to be counterclockwise ordered for a RH rule oriented normal vector.
computeTrilinearImage(double[], float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Transforms and resamples volume using trilinear interpolation.
computeTrilinearImage(float[], float, float, float, int, int, int, float[], int, int, int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: Transforms and resamples volume using trilinear interpolation
ComputeTrustRegionStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
computeUniformVariables() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Computes the input parameters to the GLSL shader program based on the ClassificationWidgetState and passes them to the program to render the widget in the multi-histogram panel.
computeVariance3dDouble(libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
computeVertexInformation() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Let V[i] be a vertex in the triangle mesh.
computeVertexInformation() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Let V[i] be a vertex in the triangle mesh.
computeVertexInformation() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Let V[i] be a vertex in the triangle mesh.
computeVertexInformation(float[], float, Vector3f[], Vector3f[], UnorderedSetInt[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Let V[i] be a vertex in the triangle mesh.
computeVertexNormals() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the vertex normals of the triangle mesh.
computeVertexNormals() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Compute the vertex normals of the triangle mesh.
computeVertexNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Compute the vertex normals of the triangle mesh.
computeVertexNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Compute the normal vector for each vertex as the normalized average normal vector of all the triangles of which the vertex belongs.
computeVertexNormals(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the vertex normals of the triangle mesh.
ComputeVisibility(CeresSolver.CompressedRowBlockStructure, int, Vector<HashSet<Integer>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
ComputeVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Calculates volume of triangle mesh.
computeVolumeBoundaryDist(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Compute the Euclidean distance from each sample "inside" the volume to the nearest point on the surface surrounding the volume.
computeWSincImage(float, float, float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
concatenate - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true, form only 1 result image by concatenating the original source to each of the calculated features.
concatenate - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true, form only 1 result image by concatenating the original source to each of the calculated features.
concatenate - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: If true, only one result image with the original source concatenated with the calculated features.
concatenateCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
concatenatedSATSelection - Variable in class gov.nih.mipav.model.file.FileGESigna4X
concatenatedSATSelection - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
concatenateMatrix(TransMatrix[], int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Concatenates the matrices.
CONCENTRATION - gov.nih.mipav.model.file.FileInfoBase.UnitType
cond() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Two norm condition number
condenserContrast - Variable in class gov.nih.mipav.model.file.FileInfoCZI
condenserContrast - Variable in class gov.nih.mipav.model.file.FileInfoZVI
condenserNumericalAperture - Variable in class gov.nih.mipav.model.file.FileInfoZVI
condenseVOI(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
condenseVOI(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
condenseVOI(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
condenseVOI(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
condenseVOI(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
condition_variable - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
ConditionedCostFunction(CeresSolver.CostFunction, Vector<CeresSolver.CostFunction>, CeresSolver.Ownership) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction
conditioners_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction
ConditionNumber - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
coneDefault - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Cone shape part of the probe.
coneHeadBottom - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadBottomIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadBottomIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadBottomTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadTop - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadTopIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadTopIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneHeadTopTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
coneIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Indicator probe cone shape.
coneIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Indicator probe cone shape.
coneIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Indicator probe cone shape.
coneIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Tranformgroup of the indicator cone shape.
coneIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Transform group of the indicator cone shape.
coneIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Tranformgroup of the indicator cone shape.
coneTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Transform group of the cone shape.
coneTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Cone geometry shape part of the CoolTip probe.
coneTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Cone geometry shape part of the regular probe.
coneTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe geometry shapes.
coneTipIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Indicator probe geometry shapes.
coneTipIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Indicator probe geometry shapes' transform groups.
coneTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: The probe tip cone geometry shape.
coneTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: The probe tip cone geometry shape.
coneTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe geometry shapes' transform groups.
conf - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
conf - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
CONF_H - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
CONF_H - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
CONF_L - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
CONF_L - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
CONF_NMX - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
CONF_NMX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
confidence - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
confidenceImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
confidenceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
config - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The config used to extends the Canvas3D class.
config - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Configuration param, which will pass down to each render's constructor.
config - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Configuration param, which will pass down to each render's constructor.
CONFIG - gov.nih.mipav.view.Preferences.LogLevel
config_name - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
ConfigFile(String) - Constructor for class gov.nih.mipav.model.algorithms.libdt.ConfigFile
configuration - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
configuration - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
Configuration() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
Configuration(int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
configure(GraphPanel, Edge) - Method in class gov.nih.mipav.view.graphVisualization.MipavEdgeRenderer
configure(GraphPanel, ModelPoint, Node) - Method in class gov.nih.mipav.view.graphVisualization.MipavNodeRenderer
CONFIGURE_CHANNELS - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
configured - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
configuredListener - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
configureFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Constructs main frame structures for the surface.
configureFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Constructs main frame structures for 3 images.
configureFrame() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Constructs main frame structures for image canvas.
configureFrame() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Constructs main frame structures for 3 image planes.
configureFrame() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Constructs main frame structures for image canvas.
configureFrame() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Constructs main frame structures for 3 images (image A only) or 9 images (image A and image B).
configureListPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
configureSliceFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Constructs main frame structures for 3 image planes.
configureSliceFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Constructs main frame structures for 3 image planes.
configureVolumeFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Constructs main frame structures for 3 image planes.
configureVolumeFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Constructs main frame structures for 3 image planes.
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Configure the mid, apex and base VOIs, sort them in order.
configVOIsNumbers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Configure the mid, apex and base VOIs, sort them in order.
confirmFileType() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Checks that the RandomAccessIO begins with 'P5'
CONFLUENT_HYPERGEOMETRIC_FIRST_KIND - Static variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Confluent Hypergeometric Function of the First Kind.
CONFLUENT_HYPERGEOMETRIC_SECOND_KIND - Static variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Confluent Hypergeometric Function of the Second Kind
ConfluentHypergeometric - Class in gov.nih.mipav.model.algorithms: This code calculates the confluent hypergeometric function of the first and second kinds For the confluent hypergeometric function of the first kind a typical usage for the routine requiring real parameters and a real argument would be:
ConfluentHypergeometric() - Constructor for class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
ConfluentHypergeometric(double, double, double, double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
ConfluentHypergeometric(double, double, double, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
ConfluentHypergeometric(double, double, double, double, double, double, int, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
ConfluentHypergeometric(int, double, double, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
confTr_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
CONJ - gov.nih.mipav.model.structures.jama.SuperLU.trans_t
conjugate_lossFunction(int, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM
ConjugateGradient - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2018 Komahan Boopathy Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
ConjugateGradient(double[][], double[], int, double, double[], int[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.ConjugateGradient
ConjugateGradientsSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ConjugateGradientsSolver
ConjugateGradientTest - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2018 Komahan Boopathy Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
ConjugateGradientTest() - Constructor for class gov.nih.mipav.model.algorithms.ConjugateGradientTest
ConjugateGradientTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
conjugateLossFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
conlim - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
connect - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Holds how vertices are connected.
connect() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
connect() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: DOCUMENT ME!
connect() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
connectClientToServer(String, boolean, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: This is a simple interface to establish an association over a socket from the client (i.e.
connected - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
connected - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Flag indicating whether of not the socket is connected.
CONNECTED12 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
CONNECTED12 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
CONNECTED12 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
CONNECTED12 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
connected18Object3D(boolean[][][], int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: 3D images: 18-neighborhood.
CONNECTED24 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
CONNECTED24 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
CONNECTED26 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
CONNECTED26 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
connected26Object3D(boolean[][][], int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: 3D images: 26-neighborhood.
CONNECTED4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
CONNECTED4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
CONNECTED4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
CONNECTED4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
connected4Object2D(boolean[][], int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: 2D images: 4-connectivity.
CONNECTED6 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
CONNECTED6 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
connected6Object3D(boolean[][][], int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: 3D images: 6-neighborhood.
CONNECTED8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
CONNECTED8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
CONNECTED8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
CONNECTED8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
CONNECTED80 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
connected8Object2D(boolean[][], int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: 2D images: 8-neighborhood.
Connection(Backpropagation.Neuron) - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation.Connection
Connectioncounter - Variable in class gov.nih.mipav.model.algorithms.Backpropagation
connectionLookup - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
connections - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
connections - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: used in smoothing.
connectivity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Vector to hold the connection index.
connectNearNeighbors(int, BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility: Set elements of the returned BitSet meet at least one of the following criteria: Element is set in connectingRegion. Walking up, down, right, and/or left from loc to this element requires less than or equal to maxNeighborDistance steps.
connectNearNeighbors(int, BitSet, BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility: A helper method for connectNearNeighbors(int, BitSet, int) that allows faster copies
connectNearNeighborsUtil(int, BitSet, BitSet, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
connectToServer(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move: connects to server with the supplied Application entity title.
connectToServer(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query: Connects to the server with an Application Entity title provided.
connectType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
connectTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
CONSECUTIVE_BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileSVS
CONSECUTIVE_BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileTiff
consecutiveBadFaxLines - Variable in class gov.nih.mipav.model.file.FileSVS
consecutiveBadFaxLines - Variable in class gov.nih.mipav.model.file.FileTiff
consecutiveNegativeNeeded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
Consistency(int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
ConsistencyCheck() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Tests if any interior points has gone outside outer path of the shape.
CONSOLE - gov.nih.mipav.model.algorithms.CeresSolver.DumpFormatType
CONST_BITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
CONST_BITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
CONST_BITS - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
CONST_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
constancy_mask_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
constant - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
CONSTANT - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
CONSTANT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
constant_parameter_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
CONSTANT_RADIUS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
CONSTANT_TISSUE - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
constantButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
constantColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Randomly add group color.
constantFOV - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: We use the constant to preserve the FOV.
constantFOVradio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Radio button for constant FOV interpolation.
ConstantFunction() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
ConstantFunction(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
ConstantPolynomial(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
constantRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Radius of uniform poriton of the initial bleach
constantTissueRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
constrainBoundsCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
constrainBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
CONSTRAINED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
CONSTRAINED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
CONSTRAINED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
constrainedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
constrainedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
constrainedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
ConstrainSearchParameters(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Constrain the pose and model parameters to be within some reasonable limits.
constraintAct - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Number of active constraints.
constraintAct - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Number of active constraints.
constraints(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Applies constraints to the input image kImage and writes the constrained values into the m_kPSFImage.
construct(ModelStorageBase.DataType, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Allocates buffer memory of the specified type.
constructDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

Creates a dialog to choose if histogram should be over all of image or just VOI regions.
constructDialog(boolean) - Method in class gov.nih.mipav.view.JFrameHistogram: Creates a dialog to choose if histogram should be over all of image or just VOI regions.
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
CONSTRUCTION_NONE - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
constructionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
constructionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
constructionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
constructionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
constructionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
constructionMethod - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
constructionMethod - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
constructionMethod - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
constructionMethod - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
constructionMethod - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
constructionMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
constructionMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
constructionMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
constructionMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
constructionMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
constructionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
constructionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
constructionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
constructionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
constructionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
constructPoint(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Construct a full 7-dimension transformation vector from the partial transformation vector.
constructPoint(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Construct a full 12-dimension transformation vector from the partial transformation vector.
constructPoint(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Construct a full 7-dimension transformation vector from the partial transformation vector.
constructPoint(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Construct a full 12-dimension transformation vector from the partial transformation vector.
constructPoint(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Construct a full transformation vector from the partial transformation vector.
constructProblem(List<Double>, List<svm_node[]>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
constructProblem(List<Integer>, List<FeatureNode[]>, int, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
constructPyramid(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
constructRenderers() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Construct the volume rendering methods based on the choices made from the resample dialog.
constructRenderers(ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Construct the volume rendering methods based on the choices made from the resample dialog.
constructRenderers(ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Construct the volume rendering methods based on the choices made from the resample dialog.
constructUserInformation() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Fills the with MIPAV information.
consume_data - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
consume_data(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
CONSUME_DATA - Static variable in class gov.nih.mipav.model.file.libjpeg
consume_input - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
consume_markers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
CONSUME_MARKERS - Static variable in class gov.nih.mipav.model.file.libjpeg
contactEmail - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactExperimenterRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactFirstName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactInstitution - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactIsPerson - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactLastName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
contactPerson - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
contain(float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: This is used by SVM boundary training to identify the prostate boundary VOI landmark points.
container - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: main container for this object:
container - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: main container for this object, contains the scroll pane and the depth slider:
Container() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
containingFrame - Variable in class gov.nih.mipav.view.JFrameHistogram: frame containing the lut interface (if display in a stand-alone window)
containingPanel - Variable in class gov.nih.mipav.view.JFrameHistogram: panel containing the lut interface (used in the stand-alone frame or in an outside frame)
contains(float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if the input iX, iY is contained within this contour.
contains(float, float) - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns true if the input iX, iY is contained within this contour.
contains(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if the input iX,iY,iZ is contained within this contour.
contains(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns true if the input iX,iY,iZ is contained within this contour.
contains(int, int, boolean) - Method in class gov.nih.mipav.model.structures.VOIBase
contains(int, int, VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Determines if the supplied point can be found within the points that define the contour.
contains(Point3D) - Method in class gov.nih.mipav.model.structures.CubeBounds: method tests seedPt parameter for inclusion inside this logical cube.
contains(VOIBase, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Used to determine which contour is selected.
contains(LinkedList, Point3i) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Contains determines if the linked list kTriList contains the input triangle, which is specified by three vertex indices.
contains(LinkedList, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Contains determines if the linked list kTriList contains the input triangle, which is specified by three vertex indices.
contains(Point2f[], Point2f) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: support for point-in-triangle tests; The akVertex array must have length 3.
contains(Vector2f[], Vector2f) - Static method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: support for point-in-triangle tests; The akVertex array must have length 3.
contains3D(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIContour
containsAnnotation(VOI, VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
containsDICM - Variable in class gov.nih.mipav.model.file.FileInfoDicom: True if the DICOM file has the ID DICM at beginning at file pointer 128.
containsDirectoryOfType(Class<? extends MetadataExtractor.Directory>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Indicates whether an instance of the given directory type exists in this Metadata instance.
containsKey(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Determines if the set contains a parameter with the given name.
containsMesh(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: containsMesh returns the SurfaceAttributes[] containing the input ModelTriangleMesh parameter, where the SurfaceAttributes[] array is of length 1.
containsParameter(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Checks to see if there is an entry in the parameter table for a particular label.
ContainsPoint(int, int, ModelSimpleImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Check the point is inside the image or not
containsSegment(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Determines whether data is present for a given segment type.
containsSegment(MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Determines whether data is present for a given segment type.
containsSliceEntry(HashMap<Integer, int[]>, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Whether the slice is assigned to another slice elsewhere in the map
containsTag(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Indicates whether the specified tag type has been set.
containsTag(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Returns whether the dicom dictionary contains a tag with the given key identifier.
containsTag(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns whether the tag table contains a tag with the given key identifier, either in the reference tag table or the slice-specific table
containsTag(PrivateFileDicomKey) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Returns whether the dicom dictionary contains a tag with the given key identifier.
containsTag(String) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns whether the tag table contains a tag with the given key identifier, either in the reference tag table or the slice-specific table
containsType(int) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Determines if the map contains a matrix of the given type (checks for String.contains()).
containsUniqueTag(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns whether this specific tag table contains a tag with the given key identifier, does not check the reference tag table
containsUniqueTag(String) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns whether this specific tag table contains a tag with the given key identifier, does not check the reference tag table
containsVector(LinkedList<Vector3f>, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Return index of the Vector3f in the list.
containsX(int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
containsY(int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
containsZ(int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
contButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Continue play button.
contButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Continue play button.
contButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Continue play button.
content - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
content - Variable in class gov.nih.mipav.model.algorithms.CVODES.DtpntMemRec
contentBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Box layout for control panel.
contentBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Box layout for control panel.
contentPane - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
contents - Variable in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
contentString - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: Concise textual description of the information in the array
ContentTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
context - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
context - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
context - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
context - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
context - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
context - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
context() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
Context() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Context
context_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
context_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
CONTEXT_2_STYLE_2_TEXTUREREF - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
context_impl_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
context_impl_owned_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
context_state - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
contextStringToURL(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
contig - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 222 Continuous slices flag.
contig - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
contiguousSlices - Variable in class gov.nih.mipav.model.file.FileGESigna4X
contiguousSlices - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
continue_minimization(NelderMead.simplex_t, int, int) - Method in class gov.nih.mipav.model.algorithms.NelderMead
continueUpdate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Flag indicates to continue update the surface render and plane render or not.
continueUpdate - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Flag indicates to continue update the surface render and plane render or not.
continuous_wavelet(PyWavelets.WAVELET_NAME, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
continuousVOIBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
ContinuousWavelet() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
contour - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
contour - Variable in class gov.nih.mipav.view.RubberbandPolyline: DOCUMENT ME!
Contour - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
CONTOUR - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type CONTOUR.
contourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
contourColor - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
contourGraph - Variable in class gov.nih.mipav.model.structures.VOI: ViewJFrameGraph for graphing contours in this VOI
contourMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
contourMask - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
contourOrderSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
contourOrderSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
ContourPlot - Class in gov.nih.mipav.model.algorithms: The Contours class provides methods to compute contour lines and contour bands from a 2D regular grid of scalar values.
ContourPlot() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot
ContourPlot.AdaptableView - Interface in gov.nih.mipav.model.algorithms: The AdaptableView interface defines the ContourPlot.AdaptableView.setView(Rectangle2D) method.
ContourPlot.BarycentricGradientPaint - Class in gov.nih.mipav.model.algorithms: The BarycentricGradientPaint class provides a way to fill a Shape with a triangular color gradient.
ContourPlot.BarycentricGradientPaintContext - Class in gov.nih.mipav.model.algorithms: This class is implements the PaintContext for ContourPlot.BarycentricGradientPaint.
ContourPlot.BlankCanvasFallback - Class in gov.nih.mipav.model.algorithms: Fallback implementation for BlankCanvas for systems that do not support OpenGL 3 through org.lwjgl.opengl.awt.AWTGLCanvas (e.g. macOS).
ContourPlot.BufferedImageFactory - Class in gov.nih.mipav.model.algorithms: Class providing convenience methods for converting Images to BufferedImages.
ContourPlot.CharacterAtlas - Class in gov.nih.mipav.model.algorithms: The CharacterAtlas class is a texture atlas for looking up character textures.
ContourPlot.ColorMap - Interface in gov.nih.mipav.model.algorithms: The ColorMap interface defines discrete mapping from a fixed integer interval [0..N-1] to colors through the ContourPlot.ColorMap.getColor(int) method.
ContourPlot.ColorOperations - Class in gov.nih.mipav.model.algorithms: The ColorOperations class contains methods for manipulating 32bit ARGB color values.
ContourPlot.ColorScheme - Class in gov.nih.mipav.model.algorithms: The ColorScheme is responsible for storing and providing color information, which other components can use.
ContourPlot.CompleteRenderer - Class in gov.nih.mipav.model.algorithms: The ContourPlot.CompleteRenderer comprises a ContourPlot.LinesRenderer, a PointsRenderer, a ContourPlot.TextRenderer and a ContourPlot.TrianglesRenderer.
ContourPlot.CoordinateViewListener - Interface in gov.nih.mipav.model.algorithms: The CoordinateViewListener is a listener that listens on changes to a ContourPlot.CoordSysRenderer's coordinate view (i.e.
ContourPlot.CoordSysPanning - Class in gov.nih.mipav.model.algorithms: The CoordSysPanning class implements a MouseListener and MouseMotionListener that realize panning functionality for the coordinate view of the ContourPlot.CoordSysRenderer.
ContourPlot.CoordSysRenderer - Class in gov.nih.mipav.model.algorithms: The CoordSysRenderer is a ContourPlot.Renderer that displays a coordinate system.
ContourPlot.CoordSysScrollZoom - Class in gov.nih.mipav.model.algorithms: The CoordSysScrollZoom class implements a MouseWheelListener that realize zooming functionality for the coordinate view of the ContourPlot.CoordSysRenderer.
ContourPlot.DefaultColorMap - Enum in gov.nih.mipav.model.algorithms
ContourPlot.DefaultColorScheme - Enum in gov.nih.mipav.model.algorithms: Enum containing predefined ContourPlot.ColorSchemes, which can be accessed through ContourPlot.DefaultColorScheme.get().
ContourPlot.ExtendedWilkinson - Class in gov.nih.mipav.model.algorithms: Implementation of the extended Wilkinson algorithm for tick label positioning.
ContourPlot.FontProvider - Class in gov.nih.mipav.model.algorithms
ContourPlot.GenericKey - Class in gov.nih.mipav.model.algorithms: The GenericKey class can be used as key in HashMaps when multiple objects should be combined to a single key.
ContourPlot.GenericRenderer<T extends ContourPlot.Renderable> - Class in gov.nih.mipav.model.algorithms
ContourPlot.Glyph - Interface in gov.nih.mipav.model.algorithms: The Glyph interface has to be implemented by a class that realizes a graphical representation of a 2D point (e.g. a cross or a circle).
ContourPlot.ImageSaver - Class in gov.nih.mipav.model.algorithms: Class providing convenience methods for saving Images to file.
ContourPlot.ImageSaver.ImageSaverException - Exception in gov.nih.mipav.model.algorithms: RuntimeException class for Exceptions that occur during image saving.
ContourPlot.Img - Class in gov.nih.mipav.model.algorithms: Image class with data stored in an int array.
ContourPlot.ImgBase - Interface in gov.nih.mipav.model.algorithms: Base interface for imagingkit's Img classes.
ContourPlot.InteractionConstants - Interface in gov.nih.mipav.model.algorithms
ContourPlot.Iterators - Class in gov.nih.mipav.model.algorithms: Class holding all of the Iterator and Spliterator classes used in the ContourPlot.ImgBase interface.
ContourPlot.Iterators.ColSpliterator - Class in gov.nih.mipav.model.algorithms: Special Spliterator which guarantees that each split will cover at least an entire column of the image.
ContourPlot.Iterators.ImgAreaIterator - Class in gov.nih.mipav.model.algorithms: The standard iterator class for iterating over an area of an image.
ContourPlot.Iterators.ImgAreaSpliterator - Class in gov.nih.mipav.model.algorithms: Spliterator class for images bound to a specific area
ContourPlot.Iterators.ImgIterator - Class in gov.nih.mipav.model.algorithms: The standard Iterator class for images.
ContourPlot.Iterators.ImgSpliterator - Class in gov.nih.mipav.model.algorithms: The standard Spliterator class for images.
ContourPlot.Iterators.RowSpliterator - Class in gov.nih.mipav.model.algorithms: Special Spliterator for images which guarantees that each split will cover at least an entire row of the image.
ContourPlot.JPlotterCanvas - Interface in gov.nih.mipav.model.algorithms: This interface defines the methods required by an implementation of a canvas Component for use with JPlotter ContourPlot.Renderers such as BlankCanvas or ContourPlot.BlankCanvasFallback.
ContourPlot.Legend - Class in gov.nih.mipav.model.algorithms: The Legend class is ContourPlot.Renderable and its own ContourPlot.Renderer at once.
ContourPlot.Legend.ColormapLabel - Class in gov.nih.mipav.model.algorithms
ContourPlot.Legend.GlyphLabel - Class in gov.nih.mipav.model.algorithms
ContourPlot.Legend.LineLabel - Class in gov.nih.mipav.model.algorithms
ContourPlot.Lines - Class in gov.nih.mipav.model.algorithms: The Lines class is a collection of linear line segments.
ContourPlot.LinesRenderer - Class in gov.nih.mipav.model.algorithms: The LinesRenderer is an implementation of the ContourPlot.GenericRenderer for ContourPlot.Lines.
ContourPlot.Pair<T1,T2> - Class in gov.nih.mipav.model.algorithms: Pair class.
ContourPlot.ParallelForEachExecutor<T> - Class in gov.nih.mipav.model.algorithms: CountedCompleter class for multithreaded execution of a Consumer on a Spliterator.
ContourPlot.PDFRenderer - Interface in gov.nih.mipav.model.algorithms: The PDFRenderer interface defines the method ContourPlot.PDFRenderer.renderPDF(PDDocument, PDPage, int, int, int, int) which 'renders' the PDFRenderers's content as pdf objects in content streams, i.e. fills content streams with elements and appends them to the specified page.
ContourPlot.Pixel - Class in gov.nih.mipav.model.algorithms: Pixel class for retrieving a value from an ContourPlot.Img.
ContourPlot.PixelBase - Interface in gov.nih.mipav.model.algorithms: Basic interface for Pixel classes of ContourPlot.ImgBase implementations.
ContourPlot.PixelConvertingSpliterator - Class in gov.nih.mipav.model.algorithms: The PixelConvertingSpliterator enables iterating an ContourPlot.Img with a different datatype than ContourPlot.Pixel (ContourPlot.ImgBase.spliterator()).
ContourPlot.PixelConvertingSpliterator.PixelConverter - Interface in gov.nih.mipav.model.algorithms
ContourPlot.PixelManipulator - Interface in gov.nih.mipav.model.algorithms: The PixelManipulator interface defines an action to be performed on a pixel.
ContourPlot.PointDetails - Class in gov.nih.mipav.model.algorithms: Class for storing all the details of a single point to be rendered.
ContourPlot.PointeredPoint2D - Class in gov.nih.mipav.model.algorithms: The PointeredPoint2D class is an implementation of the Point2D class that uses two double arrays of size 1 to store its x and y coordinate.
ContourPlot.Points - Class in gov.nih.mipav.model.algorithms: The Points class is a collection of 2D points that are to be represented using the same ContourPlot.Glyph (the graphical representation of a point).
ContourPlot.Renderable - Interface in gov.nih.mipav.model.algorithms: Interface for an object that can be rendered by a ContourPlot.Renderer e.g. the ContourPlot.GenericRenderer.
ContourPlot.Renderer - Interface in gov.nih.mipav.model.algorithms: The Renderer interface defines methods to initialize the renderer, execute a rendering pass, close the renderer.
ContourPlot.SegmentDetails - Class in gov.nih.mipav.model.algorithms: Specification of a line segment which comprises vertex locations, colors, picking color, and thicknesses.
ContourPlot.SignedDistanceCharacters - Class in gov.nih.mipav.model.algorithms: The SignedDistanceCharacters class comprises signed distance fields of a set of characters.
ContourPlot.SimpleColorMap - Class in gov.nih.mipav.model.algorithms: Implementation of the ContourPlot.ColorMap interface.
ContourPlot.Text - Class in gov.nih.mipav.model.algorithms: Abstract class for ContourPlot.Renderables representing text that can be rendered using the ContourPlot.TextRenderer.
ContourPlot.TextRenderer - Class in gov.nih.mipav.model.algorithms: The TrianglesRenderer is an implementation of the ContourPlot.GenericRenderer for ContourPlot.Text.
ContourPlot.TickMarkGenerator - Interface in gov.nih.mipav.model.algorithms: The TickMarkGenerator interface provides the ContourPlot.TickMarkGenerator.genTicksAndLabels(double, double, int, boolean) method.
ContourPlot.TranslatedPoint2D - Class in gov.nih.mipav.model.algorithms: The TranslatedPoint2D is an implementation of Point2D that references another Point2D and has a certain fixed translation from that point.
ContourPlot.TriangleDetails - Class in gov.nih.mipav.model.algorithms: Specification of a triangle which comprises vertex locations, colors and picking color.
ContourPlot.Triangles - Class in gov.nih.mipav.model.algorithms: The Triangles class is a collection of 2D triangles.
ContourPlot.TrianglesRenderer - Class in gov.nih.mipav.model.algorithms: The TrianglesRenderer is an implementation of the ContourPlot.GenericRenderer for ContourPlot.Triangles.
ContourPlot.Utils - Class in gov.nih.mipav.model.algorithms: Class containing utility methods
contourPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
contourPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
contourPolygon - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
ContourStats() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
contourTextArea - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Displays points and name of selected VOI or contour
contourVector - Variable in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: The contours of the VOI we are building.
contourVector - Variable in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: The contours of the VOI we are building.
contourVector - Variable in class gov.nih.mipav.view.dialogs.MyXMLHandler: The contours of the VOI we are building.
contourVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: The contours of the VOI we are building.
CONTRACT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: DOCUMENT ME!
CONTRACT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
contractButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
ContractingSnake() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
ContractingSnakeNode() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
contraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
contraction - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
ContractTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
contrast - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate contrast, also known as sum of squares variance Sum over i,j of Probability(i,j) * (i-j) * (i-j).
contrast - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate contrast, also known as sum of squares variance Sum over i,j of Probability(i,j) * (i-j) * (i-j).
contrast - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Diffusion contrast parameter.
contrast - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.model.file.FileSVS
contrast - Variable in class gov.nih.mipav.model.file.FileTiff
contrast - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: scale factor ranging from 0.1 to 10.0 by which to multiply each red, green, and blue
contrast - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
contrast - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
contrast() - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
contrast(float) - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
CONTRAST - gov.nih.mipav.view.ViewJSlider.SliderType
CONTRAST - Static variable in class gov.nih.mipav.view.ViewJSlider
contrastAgent - Variable in class gov.nih.mipav.model.file.FileGESigna4X
contrastAgent - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
contrastAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
contrastAmount - Variable in class gov.nih.mipav.model.file.FileGESigna4X
contrastAmount - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
contrastBolusAgent - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusAgent - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusAgentIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusAgentPos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredient - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusIngredient - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredientConcentration - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusIngredientConcentration - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredientConcentrationIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredientConcentrationPos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredientIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusIngredientPos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusRoute - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusRoute - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusRouteIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusRoutePos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusStartTime - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusStartTime - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusStartTimeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusStartTimePos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusTotalDose - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusTotalDose - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusTotalDoseIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusTotalDosePos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusVolume - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastBolusVolume - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusVolumeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastBolusVolumePos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
contrastCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
contrastCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
contrastDescription - Variable in class gov.nih.mipav.model.file.FileGESigna4X
contrastDescription - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
contrastManagerMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
contrastMethod - Variable in class gov.nih.mipav.model.file.FileInfoCZI
contrastMethod - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
contrastMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 106.
contrastSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
contrastSlider - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
contrastSlider - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
contrastType - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
contrastType - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastTypeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastTypePos - Variable in class gov.nih.mipav.model.file.FilePARREC
contrastUsed - Variable in class gov.nih.mipav.model.file.FileGESigna4X
contrastUsed - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
contributor - Variable in class gov.nih.mipav.model.file.FileInfoJSON
controlFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
controlFrame - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
controlFrame - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
controlFrame - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
controller - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
controller - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
controllerUpdate(ControllerEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Controller Listener.
controllerUpdate(ControllerEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: Controller Listener.
controllerUpdate(ControllerEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Controller Listener.
controlMat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
controlMat - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
controlMat25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
controlMat25D - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
controlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Control panel.
controlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Main panel for sliders.
controlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: the control panel that hold the z slider.
controlPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Control panel.
controlPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Main panel for sliders.
controlPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
controlPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
controlPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
controlPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
controlPanelBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Control panel box that hold the control panel.
controlPanelBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Control panel box that hold the control panel.
controlPoints - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
controlPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
controls - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Controls affected by opacity changes.
controls - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameImage: Reference to the toolbars located in the controls object.
controls - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
controls - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Used to obtain initial paint opacity and color.
Controls(JDialogBase) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: Constructor which creates the controls.
contSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
contSlider - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
conv(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
conv(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
CONV_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
conv12(double, double, double[][]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Converts a real and imaginary number pair to a form of a 2x2 real array.
conv2(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
conv2(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
conv21(double[][]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Converts a number represented in a 2x2 real array to the form of a real and imaginary pair.
conv2ColVecSame(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
conv2RowVecSame(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
conv2Same(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
ConvAndLinear(double[], int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
conventionField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
converged - Variable in class gov.nih.mipav.model.algorithms.LsqFit
CONVERGENCE - gov.nih.mipav.model.algorithms.CeresSolver.TerminationType
convergenceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: DOCUMENT ME!
convergenceLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
convergenceThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Convert the SKI10 axial image to sagittal, coronal orientation image.
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
conversion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
conversionFactorCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: sigma conversion factor is by 1.0 / (2*Math.sqrt(2*Math.log(2)))
conversionProgram - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
conversionSpaceTimeUnits - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should use enum conversions
convert(int) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
convert(int) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
CONVERT_FLOAT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
convert_gray_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
convert_Mat_rm(SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Mat_rm_type) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
convert2D(ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelImageToImageJConversion: converts 2D
convert2D(ImageProcessor) - Static method in class gov.nih.mipav.model.structures.ImageJToModelImageConversion: Coverts 2D images
convert3D(ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelImageToImageJConversion: converts 3D
convert3D(ImageStack) - Static method in class gov.nih.mipav.model.structures.ImageJToModelImageConversion: converts 3D images
convert3Dto4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
convert3Dto4DAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
convert4Dto3D - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: If true convert the selected images to 3D datasets.
convert4Dto3D - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: DOCUMENT ME!
convert4Dto3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Converts the 4D image to a 3D image.
convert4Dto3DAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: DOCUMENT ME!
ConvertASFfromVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Convert ASF shape from VOI
convertButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE: DOCUMENT ME!
convertButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: DOCUMENT ME!
convertBytesToGBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of bytes) to a number indicating a quantity of gigabytes.
convertBytesToMBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of bytes) to a number indicating a quantity of megabytes.
convertBytesToVersionString(int[], int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor: Takes a series of 4 bytes from the specified offset, and converts these to a well-known version number, where possible.
convertCIELabtoRGB(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
convertCIELabtoRGB(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
convertCIELabtoRGB(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
convertCIELabtoRGB(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
convertCommandToString(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: Converts DICOM command from and int code to a string
convertCoordinate(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
convertDenseToSuperMatrix(double[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
convertDenseToSuperMatrix(SuperLU.doublecomplex[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
convertElementToPixel(T, P) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: converts the specified element back to the specified pixel (set pixel value according to element).
converter - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
convertFnPtToScreenSpaceX(float) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: This method converts a transfer function point value into screen space so that it can be displayed on the histogram.
convertFrom(double, FileInfoBase.Unit) - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit: Method converts the origValue that is currently in units of origUnit to the units specified by this unit.
convertFromGray(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Called after the deconvolution algorithm is run.
convertGBytesToBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of gigabytes) to a number indicating a quantity of bytes.
convertGBytesToMBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of gigabytes) to a number indicating a quantity of megabytes.
convertGraphToInt(int) - Method in class gov.nih.mipav.view.RubberbandLivewire: Takes a byte and gets appropriate addition from current position.
convertGraphToInt(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Takes a byte and gets appropriate addition from current position.
convertGroupElement(int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Converts the integer values of the group word and element word into a string that is the hexadecimal representation of group word and element word, separated by a comma.
convertIntoFloat(String[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Takes an array of strings and converts each entry into a float value.
convertISO2022CharsetToJavaCharset(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter: Converts the given ISO2022 char set to a Java charset name.
convertItemTypeToString(byte) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: Converts item type to a readable string.
convertKBytesToGBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of kilabytes) to a number indicating a quantity of gigabytes.
convertKBytesToMBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of kilabytes) to a number indicating a quantity of megabytes.
convertKeypointsToInputImageSize(Vector<SIFTImageSimilarity.KeyPoint>) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
convertMBytesToBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of megabytes) to a number indicating a quantity of bytes.
convertMBytesToGBytes(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: convert the number given by the string (assuming it is a number indicating a quantity of megabytes) to a number indicating a quantity of gigabytes.
convertmovie(libdt.Mat[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.libdt
convertNumbersToStr(String) - Method in class gov.nih.mipav.model.file.FileIO
convertPatientInfo(FileInfoImageXML) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Strips out the relevant patient info (if present) to insert into MIPAV's XML header
convertPixelToElement(P, T) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: converts the specified pixel to the specified element (initiliazation of previously allocated element).
convertRGBtoCIELab() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
convertRGBtoCIELab() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
convertRGBtoCIELab(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
convertRGBtoCIELab(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
convertRGBtoCIELab(float[], float[], float[], float[], float[], float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
convertScreenSpaceXToFnPt(int) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: This method converts a point in screen space into a transfer function point value.
convertSetToPoints(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
convertTagsToTable() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Returns all of the dicom-converted tags in the minc header as a tag-value hashtable.
convertTagsToTable() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Returns all of the dicom-converted tags in the minc header as a tag-value hashtable.
convertTo(double, FileInfoBase.Unit) - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit: Method converts the origValue quantity from the current units to the resultUnit.
convertTo4D(Matrix4f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
convertToACPC() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Converts image to AC-PC image.
convertToAlias(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil: Converts a transfer syntax UID to one of the three transfer syntaxes.
convertToARGB(ModelImage) - Static method in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
convertToASCII(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Simple utility to convert a number to ASCII.
convertToDICOMInfo(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
convertToDICOMInfo(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
convertToDPString(ImageVariableTable) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable
convertToFileDicomKey() - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey
convertToFileURL(String) - Static method in class gov.nih.mipav.view.MipavUtil: Convert from a filename to a file URL.
convertToFloat() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Disposes of old data and constructs a new buffer of the user specific type if the image in NOT locked.
convertToGray(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Convert the input image, kImage, to a grayscale image using the AlgorithmRGBtoGray.
convertToHex(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Simple utility to convert a number [0:15] to hex.
ConvertToInterpolationCoefficients(double[], int, double[], int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Helper method that converts a vector with certain values set to a matrix.
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Convert a transformation vector to a transformation matrix.
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Convert a transformation vector to a transformation matrix.
convertToMatrix(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Convert a transformation vector to a transformation matrix.
convertToMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Convert a transformation vector to a transformation matrix.
convertToMatrix(TransMatrixd, TransMatrixd, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Convert a 7-dimension transformation vector to a 3x3 transformation matrix.
convertToMatrix(TransMatrixd, TransMatrixd, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Convert a 12-dimension transformation vector to a 4x4 transformation matrix.
convertToMatrix(TransMatrixd, TransMatrixd, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Convert a 7-dimension transformation vector to a 3x3 transformation matrix.
convertToMatrix(TransMatrixd, TransMatrixd, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Convert a 12-dimension transformation vector to a 4x4 transformation matrix.
convertToMatrix(TransMatrixd, TransMatrixd, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Convert a transformation vector to a transformation matrix about the origin.
convertToMatrixHalf(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMatrixHalf(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMatrixMidsagittal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMatrixMidsagittal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Helper method to take the "point" we've been working with as a vector, and convert it into a transformation matrix.
convertToMidsagittal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Converts a full transformation vector into a midsagittal transformation vector.
convertToMidsagittal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Converts a full transformation vector into a midsagittal transformation vector.
ConvertToMIPAVConvention(TransMatrix) - Static method in class gov.nih.mipav.model.file.FilePARREC: Converts translation matrix to mipav specific format
convertTomm - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
convertTomm - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
convertToMultifile(ModelImage, ModelImage, int[], int) - Method in class gov.nih.mipav.model.file.FileIO
convertToReadableString(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil: Converts a transfer syntax UID (i.e. "1.2.840.10008.1.2.4.50") to a more understandable string form ( i.e.
convertToRPN(Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method that converts the tokens to RPN
convertToString() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Retrieves the String representation of this Parameter, suitable for inclusion in a script line (e.g., "label type value" (including the quotes)).
convertToString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Converts all of the parameters in the table into a comma delimited list of parameters, suitable for inclusion in a script.
convertToString() - Method in class gov.nih.mipav.model.scripting.ParsedActionLine: Returns this parsed action and its parameters in String form.
convertToTalairach() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach: Creates Talairach image based on points that were set in component images.
convertToTalairach() - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: Creates Talairach image based on points that were set in component images.
convertToUBYTE(ModelImage) - Static method in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
convertToWildKey(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Converts group numbers of 60xx or 50xx dicom key elements so that the dicom dictionary will be able to find them.
convertToWildKey(PrivateFileDicomKey) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Converts group numbers of 60xx or 50xx dicom key elements so that the dicom dictionary will be able to find them.
convertType(byte[], boolean, int) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Converts type.
convertUIDToString(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: Converts a transfer syntax UID (i.e. "1.2.840.10008.5.1.4.1.1.1") to a more understandable string form( i.e.
convertValueToText(Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.JTreeDICOM
convertVertex(ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Convert the vertex from display space to dicom space.
convertVOITBI() - Method in class gov.nih.mipav.view.ViewJFrameImage
convertVOIToDicomSpace(VOIVector, Vector<Vector3f>, ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Conver the VOIs from image space to Dicom space
convertVOIToDicomSpace(VOIVector, Vector<Vector3f>, ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Conver the VOIs from image space to Dicom space
convertVOItoMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
convertVOItoMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
convertVOItoMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
convertVOItoMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
convertWorldToModel(Tuple3f, Tuple3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Convert coordinates from world space to model space.
convexHull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Smooth button.
convexHull() - Method in class gov.nih.mipav.model.structures.VOIContour
convexHull(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
convexHull(TriMesh) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Compute the convex hull of the input mesh, return the convex hull.
convexHull(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
convFactor - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
convFAFieldAr - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
convimageComboAr - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
convolution_method - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
convolution_method - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
convolutionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
convolve(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
convolve(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox: Perform one-dimension convolution.
convolve(double[], float[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Perform one-dimension convolution.
convolve(ModelImage, ModelImage, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Convolves two image by computing the fast fourier transforms of each image, multiplying the ffts and then computing the inverse fft of the result:
convolve_sep(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
convolve_sep_gen(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
convolve_sep_sym(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
convolve2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2D(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
convolve2D3D(int, int, double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2D3D(int, int, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DBilateral(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DBilateral(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2DNMS(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DNMS(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2DNMSE(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DNMSE(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2DPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPt(Vector2d, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPt(Vector2f, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPt(Vector2f, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtMed(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtMed(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtNMS(int, int[], double[], int[], double[], double[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtNMS(int, int[], float[], int[], float[], float[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtNMSE(int, int[], double[], int[], double[], double[], double[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtNMSE(int, int[], float[], int[], float[], float[], float[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtSqrtXY(int, int[], double[], int[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve2DPtSqrtXY(int, int[], float[], int[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve2DRGBPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve2DRGBPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve2DRGBPtSqrtXY(int, int[], double[], int[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve2DRGBPtSqrtXY(int, int[], float[], int[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve2DSqrtXY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DSqrtXY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve2DXY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve2DXY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3D(int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3D(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve3D(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
convolve3DBilateral(int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3DBilateral(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve3DNMS(int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3DNMS(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve3DNMSE(int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3DNMSE(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolve3DPt(double[], int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPt(float[], int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPt(Vector3f, ModelImage, int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPt(Vector3f, ModelImage, int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtMed(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtMed(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtNMS(int, int[], double[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtNMS(int, int[], float[], int[], float[], float[], float[], float[], float[], float[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtNMSE(int, int[], double[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtNMSE(int, int[], float[], int[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtXYZ(int, int[], double[], int[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolve3DPtXYZ(int, int[], float[], int[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolve3DRGB(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
convolve3DRGBPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve3DRGBPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve3DRGBPtXYZ(int, int[], double[], int[], double[], double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve3DRGBPtXYZ(int, int[], float[], int[], float[], float[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an RGB image at a position.
convolve3DXYZ(int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolve3DXYZ(int, int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolveBilateral2DCIELabPt(int, int[], double[], int[], double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an CIELab image at a position.
convolveBilateral2DCIELabPt(int, int[], float[], int[], float[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an CIELab image at a position.
convolveBilateral2DPt(int, int[], double[], int[], double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolveBilateral2DPt(int, int[], float[], int[], float[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolveBilateral3DCIELabPt(int, int[], double[], int[], double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with a CIELab image at a position.
convolveBilateral3DCIELabPt(int, int[], float[], int[], float[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with a CIELab image at a position.
convolveBilateral3DPt(int, int[], double[], int[], double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolveBilateral3DPt(int, int[], float[], int[], float[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolveBlock3D(int, int, int, double[], int[], int[], double[], ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
convolveBlock3D(int, int, int, float[], int[], int[], float[], ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
convolveNoColor(double[], float[], double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Perform one-dimension convolution.
convolveSep2D(CLContext, CLDevice, CLBuffer<FloatBuffer>, boolean, CLBuffer<FloatBuffer>, int, int, int, int, Kernel, int, int[]) - Static method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmConvolver
convolveSep3D(CLContext, CLDevice, CLBuffer<FloatBuffer>, boolean, CLBuffer<FloatBuffer>, int, int, int, int, Kernel, int, int[], boolean) - Static method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmConvolver
convolveWhole2DPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position.
convolveWhole2DPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position.
convolveWhole3DPt(int, int[], double[], int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: A static function that convolves a kernel with an image at a position The convolution is performed only if the whole kernel fits inside the image.
convolveWhole3DPt(int, int[], float[], int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: A static function that convolves a kernel with an image at a position The convolution is performed only if the whole kernel fits inside the image.
convolveX(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
convolveY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
convolveZ(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
convRepTime - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
convrg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
convSpec - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
COOLHOT - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be cool-hot.
cooling - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
COOLTIP_PROBE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The cool-tip type probe, which trys to mimic the real CoolTip probe.
coolTipBurn - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: CoolTip burning point reference that represents the CoolTip probe ablation type.
COOLTIPBURN - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Define the CoolTip burn type value.
coolTipProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: The root transform group the the CoolTip probe.
coolTipProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Reference to the cool-tip probe geometry structures.
CoolTipProbe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The CoolTip probe has its own geometry and type of burning.
CoolTipProbe() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Constructor to build the CoolTip probe geometry shape.
coolTipProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: CoolTip probe branch group.
coord - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Site
coord - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: coordinate used to transform data point from image coordinate to dicom coordinate
coord_code - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: If qform_code > 0, coord_code = qform_code.
coord_code - Variable in class gov.nih.mipav.model.file.FileNIFTI: If qform_code > 0, coord_code = qform_code.
coord_code2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: If qform_code > 0 and sform_code > 0, coord_code = qform_code and coord_code2 = sform_code. coord_code has values for "Arbitrary X,Y,Z coordinate system", "Scanner based anatomical coordinates", "Coordinates aligned to another file's or to anatomical truth", "Talairach X,Y,Z coordinate system", and "MNI 152 normalized X,Y,Z coordinates".
coordA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
coordArray - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM
coordB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
coordinate - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
coordinate - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
coordinateChanged(int, int, int) - Method in interface gov.nih.mipav.view.CoordinateChangeListener: A change has occurred to the current coordinates of an image frame.
CoordinateChangeListener - Interface in gov.nih.mipav.view: This interface identifies a class which wants to know about changes to the current coordinates of another frame (such as ViewJFrameTriImage).
CoordinateDescentMinimizer(CeresSolver.Context) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
coordinateListeners - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: A list of CoordinateChangeListeners who want to know about changes to the coordinate currently pointed to by the tri-image frame's crosshairs.
coordinatePanel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
coordinates - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Vector to hold the 3D coordinate positions
CoordinateSystemTransformMatrixStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
coordinateView - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
coordinateViewChanged(ContourPlot.CoordSysRenderer, Rectangle2D) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.CoordinateViewListener: Method will be called when the source's coordinate view changed.
coords - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Point3D
coordsys - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
coordsys - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
coordsysAreaLB - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
coordsysAreaLT - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
coordsysAreaRB - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
coordsysAreaRT - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
CoordSysPanning(ContourPlot.JPlotterCanvas, ContourPlot.CoordSysRenderer) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning: Creates a new ContourPlot.CoordSysPanning for the specified canvas and corresponding coordinate system.
CoordSysRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Sets up a CoordSysRenderer with the default color scheme
CoordSysScrollZoom(ContourPlot.JPlotterCanvas, ContourPlot.CoordSysRenderer) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
coordVector - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: The contours of the VOI we are building.
coordviewListener - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
copiedFunct - Static variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
copiedName - Static variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
copiedXs - Static variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
copiedYs - Static variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
coplanar - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
copy - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Flag that indicates whether to copy capture to clipboard
copy - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
copy() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap
copy() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
copy() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Returns a deep copy of this image.
copy() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails: Returns a shallow copy of this point with deep copied ContourPlot.PointDetails.location.
copy() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails: Returns a shallow copy of this segment with deep copied positions ContourPlot.SegmentDetails.p0 and ContourPlot.SegmentDetails.p1.
copy() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails: Returns a shallow copy of this triangle.
copy() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Makes a deep copy of the DICOM_DataObject.
copy() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Returns a deep copy the VR.
copy() - Method in class gov.nih.mipav.model.structures.IntVector: Clones the integer vector.
copy() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Create a deep copy of this Light instance.
copy() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightAmbient: Create a deep copy of this Light instance.
copy() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: Create a deep copy of this Light instance.
copy() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Create a deep copy of this Light instance.
copy() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Create a deep copy of this Light instance.
copy() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
copy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
copy() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
copy(AlgorithmBrainExtractor.UnorderedSetInt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Make a deep copy of the input set.
copy(AlgorithmObjectExtractor.UnorderedSetInt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Make a deep copy of the input set.
copy(IntVector) - Method in class gov.nih.mipav.model.structures.IntVector: Copies this array into the array passed in as an argument.
copy(ModelTriangleMesh.UnorderedSetInt) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Make a deep copy of the input set.
copy(BurnBaseView.UnorderedSetInt) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Make a deep copy of the input set.
copy(VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
copy(Object) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.UnoptimizedDeepCopy: Returns a copy of the object, or null if the object cannot be serialized.
copy(T) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Copies the specified Point2D (calls clone) and casts the copy to the class of the original.
Copy(TransMatrix) - Method in class gov.nih.mipav.model.structures.TransMatrix: copy, overwrite this.
Copy(TransMatrixd) - Method in class gov.nih.mipav.model.structures.TransMatrixd: copy, overwrite this.
Copy(ClassificationWidgetState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Copies the input ClassificationWidgetState:
copy_Affine(SIFT3D.Affine, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
copy_and_downsample(float[], int, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet: ------------------------------------------------------------------
copy_and_downsample(float[], int, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT: ------------------------------------------------------------------
copy_and_upsample(float[], int, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet: ------------------------------------------------------------------
copy_and_upsample_rows(float[], int, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT: ------------------------------------------------------------------
copy_ClassSig(AlgorithmGaussianMixtureModelEM.ClassSig, AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
copy_discrete_wavelet(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
copy_Keypoint(SIFT3D.Keypoint, SIFT3D.Keypoint) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
copy_Mat_rm(SIFT3D.Mat_rm, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
copy_mem_double(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
copy_mem_doublecomplex(int, SuperLU.doublecomplex[], SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
copy_mem_int(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
copy_point(int, NelderMead.point_t, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead
copy_SubSig(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
copy2D(double[], int, int, int, double[], int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copy2D(float[], int, int, int, float[], int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copy2DSrcBufferToBdrBuffer(float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Method copies the data in srcBuffer centered in the border buffer That is, the src image is completely surrounded by a border.
copy2DSrcBufferToBdrBuffer(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Method copies the data in srcBuffer centered in the border buffer That is, the src image is completely surrounded by a border.
copy3D(double[], int, int, int, int, double[], int, int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copy3D(float[], int, int, int, int, float[], int, int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copy3DSrcBufferToBdrBuffer(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Method copies the data in srcBuffer so it is centered in the border buffer That is, the src image is completely surrounded by a border.
copy3DSrcBufferToBdrBuffer(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Method copies the data in srcBuffer centered in the border buffer That is, the src image is completely surrounded by a border.
copy4D(double[], int, int, int, int, double[], int, int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copy4D(float[], int, int, int, int, float[], int, int, int, int, boolean) - Static method in class gov.nih.mipav.util.ArrayUtil
copyAdjToRefButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
copyAlInfo - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D
copyAllInfo - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult: Whether to copy all file information
copyAllInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: Whether all info in the image's FileInfo is copied
copyAllInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: Whether all info in the image's FileInfo is copied
copyAllInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: Whether all info in the image's FileInfo is copied
copyAllInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Whether all info in the image's FileInfo is copied
copyAllInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Whether all info in the image's FileInfo is copied
copyAllInfoBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: Checkbox for representing whether FileInfo is copied
copyAllInfoBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: Checkbox for representing whether FileInfo is copied
copyAllInfoBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: Checkbox for representing whether FileInfo is copied
copyAllInfoBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Checkbox for representing whether to copy all file info
copyAllInfoBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Checkbox for representing whether to copy all file info
copyAllLights() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
copyAllToRight() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI
copyAllToRight() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI
copyArea(int, int, int, int, ContourPlot.Img, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Copies specified area of this Img to the specified destination Img at specified destination coordinates.
copyBaseInfo(FileInfoBase[], FileInfoBase, float[], float[], int[], int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult
copyBMatrixFile() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method copies the optional b matrix file that user provided, and copies it to proc dir and renames it to the correct naming syntax.
copyBuffers(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Copies all values from the srcbuffer to the destination buffer. the format is intended to envision the organisation of dest[i] := src[i] float dest destination array float src source array
copyBuffers(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Copies all values from the srcbuffer to the destination buffer. the format is intended to envision the Organization of dest[i] := src[i] float dest destination array float src source array
copyByteArray(byte[], byte[]) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Copies the source byte array into the destination byte array.
copyCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Button for selecting copy to clipboard.
copyClippedVOIs(ViewVOIVector) - Method in class gov.nih.mipav.view.ViewUserInterface: Deprecated.
copyCoreInfo(FileInfoBase[], FileInfoBase[]) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Helper method to copy important file info type to another file info type.
copyCoreInfo(FileInfoBase[], FileInfoBase[], boolean[]) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Helper method to copy core information from one fileinfo into another, this method also has a list of fileinfos NOT to copy (used by JDialogRemoveSlices).
CopyData(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
CopyData(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Copies all data from a shape to this.
copyDataUnit(byte[], int, int, int, int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
copyDataUnit(byte[], int, int, int, int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
copyDataUnit(int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
copyDataUnit(int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
copyDicomInfo(FileInfoBase[], FileInfoBase, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult: Most efficient way of creating DICOM tags for 4-D.
copyFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
copyFileInfoCommon() - Method in class gov.nih.mipav.model.file.FileMedVision: copyFileInfoCommon - copy common file info into new header Better must exist but this works.
copyFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
copyFileTypeInfo(ModelImage) - Method in class gov.nih.mipav.model.structures.ModelImage: Deep copies the file type info from the fromImage to the current image object.
copyFloatData(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
copyFloatData(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
copyFloatData(ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
copyFloatData(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
copyFromSrcColRange(libdt.Mat, libdt.Mat, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt
copyFunct(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Copies the indicated function's properties, to be pasted later as a new function.
copyFunctionSample(CeresSolver.FunctionSample, CeresSolver.FunctionSample) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
copyHist(int[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
copyHist(int[][]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
copyHist(int[][][]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
copyin(byte[], FileSVS.ModHuffmanInputStream, int, boolean) - Method in class gov.nih.mipav.model.file.FileSVS
copyin(byte[], FileTiff.ModHuffmanInputStream, int, boolean) - Method in class gov.nih.mipav.model.file.FileTiff
copyInfo(NonnegativeMatrixFactorization.info, NonnegativeMatrixFactorization.info) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.NoiseLevel
copyMakeBorder(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
copyMakeBorder2D(double[][], int, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
copyMaterial(Material) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes
copyMatrix(double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrix: Copies provided transformation matrix.
copyMatrix(double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Copies provided transformation matrix.
copyMenu - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
CopyMoveAttackDetection - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
CopyMoveAttackDetection(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
CopyMoveAttackDetection.yxBlockItem - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2 - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
CopyMoveAttackDetection2(ModelImage[], ModelImage, CopyMoveAttackDetection2.Configuration, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
CopyMoveAttackDetection2.Block - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.block_data_list - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.BlockComparator - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.Configuration - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.Container - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.fraud_pair_item - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.ImageObject - Class in gov.nih.mipav.model.algorithms
CopyMoveAttackDetection2.ImageObject.KeyComparator - Class in gov.nih.mipav.model.algorithms
CopyNormalFiles(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: When the ModelImage data is rendered as a solid surface, the Normal map is used in the rendering.
copyOf(double[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: Java5 'backport' of Arrays.copyOf
copyOf(int[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: Java5 'backport' of Arrays.copyOf
copyOfCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs and new class and copy the year, month, day paramenters.
CopyParameterBlockStateToUserState() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
copyPixel(byte[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
copyPixel(byte[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
copyPixel(int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
copyPixel(int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
copyPoint(double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Make a copy of the transformation vector
copyPoint(double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Make a copy of the transformation vector
copyRefToAdjButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
copyResolutions(ModelImage, ModelImage, int) - Static method in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
copyright - Variable in class gov.nih.mipav.model.file.FileSVS
copyright - Variable in class gov.nih.mipav.model.file.FileTiff
COPYRIGHT - Static variable in class gov.nih.mipav.model.file.FileSVS
COPYRIGHT - Static variable in class gov.nih.mipav.model.file.FileTiff
copySelected(JList, JList) - Method in class gov.nih.mipav.view.JPanelListController: Copies the selected items in list A and appends them to list B.
copySelected(JTree, JTree) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI
copySelected(JTree, JTree) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI
copySelected(JTree, JTree) - Method in class gov.nih.mipav.view.JPanelTreeController: Copies the selected items in tree A and appends them to tree B.
copyState(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer
copyTo(libdt.Mat[], libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
copyTo(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
copyToDstColRange(libdt.Mat, libdt.Mat, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt
copyVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
copyVOIList - Variable in class gov.nih.mipav.view.ViewUserInterface: Vector to hold clipped VOIs (multiple).
copyVOINameList - Variable in class gov.nih.mipav.view.ViewUserInterface: Vector to hold VOI names (multiple).
copyVOIs(Vector<VOIBase>) - Method in class gov.nih.mipav.view.ViewUserInterface
COR - Static variable in class gov.nih.mipav.model.file.FileUtility: Used by FreeSurfer software. extension: -.info or -.info~ for header file -.nnn for slice data file where nnn is the slice number
core - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: core library parameters
core - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
corecpos - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
CoredEdgeIndex - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
CoredEdgeIndex() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredEdgeIndex
CoredMeshData - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
CoredMeshData() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
CoredPointIndex - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
CoredPointIndex() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
CoredPointIndex(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
CoredVectorMeshData - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
CoredVectorMeshData() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
corEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
coresize - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
corner - Variable in class gov.nih.mipav.model.algorithms.RectangularConformalMap
corner(LSCM.Vertex, LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
CORNER_DETECTOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
CORNER_DETECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
corner_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
corner_thresh_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
cornerBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
cornerCropPt - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Crop Bounding Box Corners in Screen Coordinates:.
cornerDetector - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
cornerDetector() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
cornerEdgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cornerEdgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
cornerEdgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cornerEdgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
cornerEdgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
CornerEdgePattern - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
CornerEdgePattern() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
CornerEdgePatternTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
CornerEdgePatternTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePatternTest
cornerImage - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
CornerIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
CornerIndex(int, int[], int, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CornerIndex(int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
CornerIndex(int, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CornerIndex(Point3D, Point3D) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CornerIndex(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CornerIndex(OctNode, int, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CornerIndexPosition(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
cornerMap - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
cornerNeighbor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
cornerNeighbor(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
cornerPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
cornerRB - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
corners - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
corners - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
corners - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
corners(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CORNERS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
CORNERS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
cornerToCrop() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Creates the four corners of the crop bounding box, based on the two corner crop points:
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Coronal image type
Coronal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Coronal image type
CORONAL - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
CORONAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Coronal orientation.
CORONAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
CORONAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
CORONAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
CORONAL_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
CORONAL_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
coronal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
CORONAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient
CORONAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
CORONAL_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
CORONAL_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
coronalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
coronalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
coronalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
coronalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
coronalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
coronalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
CoronalVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Coronal VOI instance
CoronalVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
correct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables JPWL correction at the decoder
correctDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: check for 2-dimensionality.
correctedBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
correctedImage - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
correctGradTransCheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
correctionFactorCheckbox - Variable in class gov.nih.mipav.view.components.JPanelSigmas: gui
correctionFactorLabel - Variable in class gov.nih.mipav.view.components.JPanelSigmas: label
correctionLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
correctionText - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
CorrectJacobian(int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
CorrectJacobian(int, int, double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
Corrector(double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
CorrectorMultidimensionalGaussNewtonApproximation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorMultidimensionalGaussNewtonApproximationZeroResidual() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorNegativeGradientDeathTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorScalarCorrection() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorScalarCorrectionAlphaClamped() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorScalarCorrectionZeroResidual() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectorZeroGradientDeathTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CorrectResiduals(int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
correctSpaceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
correctSpaceLTthick(ModelImage, float) - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: This method corrects spacing for cases where the space is less than the thickness.
correlation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate glcm correlation Sum over i,j of Probability(i,j) * (i - glcm mean) * (j - glcm mean)/ glcm variance.
correlation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate glcm correlation Sum over i,j of Probability(i,j) * (i - glcm mean) * (j - glcm mean)/ glcm variance.
correlation - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
correlation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
CORRELATION_RATIO - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
CORRELATION_RATIO - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
CORRELATION_RATIO_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
CORRELATION_RATIO_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
CORRELATION_RATIO_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
CORRELATION_RATIO_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
correlationCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
correlationCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
correlationFilter(double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
correlationRatio(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function.
correlationRatio(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function.
correlationRatio(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function.
correlationRatio(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function.
correlationRatioSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
correlationRatioSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function.
correlationRatioSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function.
correlationRatioSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function.
correlationRatioSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function.
correlationRatioSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.
correlationRatioSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.
correlationRatioSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.
correlationRatioSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.
correspButton - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is a ref to the corresponding button becasue they need to be in sync
CORTES - Variable in class gov.nih.mipav.model.algorithms.CVODES
CorticalAnalysisRender - Class in gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM: Cortical analysis applet and viewer.
CorticalAnalysisRender(GLCanvas, VolumeTriPlanarInterface, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
CorticalAnalysisRender(VolumeTriPlanarInterface, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Construct the BrainSurfaceFlattener renderer.
cos() - Method in class gov.nih.mipav.util.DoubleDouble: For all real x, cos(x) = 1 - x**2/2!
cos(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
cos(double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cos_alpha - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
cos_theta - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
cos0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
cos22 - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform
cos45 - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform
cosButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
coscof - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cosh() - Method in class gov.nih.mipav.util.DoubleDouble: For all real x, cosh(x) = 1 + x**2/2!
cosh(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle
cosh(double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
cosines - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
cosm1(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
COSM1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State
cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
cost - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
cost - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
cost - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Cost of function at this minimum.
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Cost of function at this minimum.
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem: Cost of function at this minimum.
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
cost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem: Cost of function at this minimum.
cost - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Cost of function at this minimum.
cost - Variable in class gov.nih.mipav.model.algorithms.Vectornd: Cost value
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
cost - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet
cost - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode: Cost of position.
cost - Variable in class gov.nih.mipav.view.RubberbandLivewire.TreeNode: Cost of position.
cost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Not implemented in this class.
cost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Not implemented in this class.
cost(double[]) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmOptimizeFunctionBase: DOCUMENT ME!
cost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction: Calcuated the cost function for a given simplex vertex. cost = intensity sum of errors = sum_i(I[i] - I'[i])
cost(double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer.CostFunction: Calculated cost.
cost(double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction: Cost cost = intensity sum of errors = sum_i(I[i] - I'[i]) x[] = row of p[][].
cost(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
cost(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
cost(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.
cost(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.
cost(TransMatrix) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmOptimizeFunctionBase: DOCUMENT ME!
cost(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction: Deprecated.
DOCUMENT ME!
cost(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer.CostFunction: Filler to implement cost functions from AlgorithmOptimizeFunctionBase.
cost(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction: DOCUMENT ME!
cost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.
cost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.
cost(TransMatrixd) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmOptimizeFunctionBase
cost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction: Deprecated.
DOCUMENT ME!
cost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer.CostFunction: Filler to implement cost functions from AlgorithmOptimizeFunctionBase.
cost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction: DOCUMENT ME!
cost_best - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
cost_change - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
cost_CRS - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
cost_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
cost_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
cost_fun(int, NelderMead.point_t, NelderMead.param_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead
cost_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
cost_function() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
cost_function(int, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead
cost_function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
cost_function_ownership - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
cost_function_ref_count_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
COST_FUNCTOR_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
cost_MIS - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
cost_NMIS - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
cost_NXS - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
cost_reg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
cost_total - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
costCalled - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
costCalled - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Choice of which cost function to use.
costChoice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Choice of which cost function to use.
costFunc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: The cost function to use when registering the original image against the flipped image.
costFunc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Which cost function to use (MINDIFF or MAXSUM).
costFunc - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
costFunctID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
costFunctID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
costFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Cost function called to measure cost - 1D.
costFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Cost function called to measure cost - 1D.
costFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Cost function called to measure cost - 1D.
costFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Cost function called to measure cost - 1D.
costFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Cost function called to measure cost - 1D.
CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction: Empty constructor.
CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer.CostFunction: CostFunction constructor.
CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction: CostFunction constructor.
costFunctionScrollPane - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: Scroll Pane for the Text Area
costFunctionScrollPane - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Scroll Pane for the Text Area
CostFunctionTestConditionedCostFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
costFunctionTextArea - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
costFunctionTextArea - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
CostFunctorExample() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CostFunctorExample
costGraph - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
costGraph - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
costName - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
costName - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
costNum - Variable in class gov.nih.mipav.model.algorithms.NelderMead
costs - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Array of parents
costT2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
count - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
count - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
count - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
count - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
count - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
count - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
count - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
count - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
count - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
count - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
count - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
count - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear.GroupClassesReturn
count - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
count_contours(GenericPolygonClipper.polygon_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
count_occurrence(int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
count_optimal_vertices(GenericPolygonClipper.gpc_vertex_list) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
countArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
countArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice
countArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
countedByteRead() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns a byte read from the RandomAccessIO.
counter - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
counter - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
counter - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
counter - Variable in class gov.nih.mipav.model.file.FilePARREC: counter
counter_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
counter_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
counterClockwise(float[], float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Change the given VOI to counter clock wise order.
counterClockwise(float[], float[], float[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Change the VOI points to counter clock wise order.
counterClockwise(float[], float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
counterGC - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
counterLock - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
countMaskLabels() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Procedure that counts the number of labels in the mask image.
countNonZero(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
countnz(int, int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
countObservers() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
countObservers() - Method in interface gov.nih.mipav.model.util.Observable: Returns the number of the observers of this Observable object.
country - Variable in class gov.nih.mipav.model.file.FileInfoCZI
counts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
countSinceLastUpdate - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
countTable - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
countText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
countText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
countThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
countThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
countThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Number of counts required to find an ellipse
countThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Number of counts required to find a hyperbola
courier10 - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 10 point, plain, courier font.
courier10 - Static variable in class gov.nih.mipav.view.MipavUtil: A 10 point, plain, courier font.
courier12 - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 12 point, plain, courier font.
courier12 - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, plain, courier font.
courier12B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 12 point, bold, courier font.
courier12B - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, bold, courier font.
courier13 - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, plain, courier font.
courier13B - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, bold, courier font.
cov_code - Variable in enum gov.nih.mipav.model.algorithms.libdt.cov_type: < iid covariance matrix.
COV_DIAG - gov.nih.mipav.model.algorithms.libdt.cov_type: < Full covariance matrix.
COV_FULL - gov.nih.mipav.model.algorithms.libdt.cov_type
COV_IID - gov.nih.mipav.model.algorithms.libdt.cov_type: < diagonal covariance matrix.
COV_ILLEGAL - gov.nih.mipav.model.algorithms.libdt.cov_type
COV_REG_ADD - gov.nih.mipav.model.algorithms.libdt.cov_reg_type: < enforce a minimum eigenvalue of regval
cov_reg_code - Variable in enum gov.nih.mipav.model.algorithms.libdt.cov_reg_type
COV_REG_ILLEGAL - gov.nih.mipav.model.algorithms.libdt.cov_reg_type: < add a constant regval to the diagonal
COV_REG_MIN - gov.nih.mipav.model.algorithms.libdt.cov_reg_type: < no regularization
COV_REG_NONE - gov.nih.mipav.model.algorithms.libdt.cov_reg_type
cov_reg_type(int) - Constructor for enum gov.nih.mipav.model.algorithms.libdt.cov_reg_type
cov_type(int) - Constructor for enum gov.nih.mipav.model.algorithms.libdt.cov_type
covar - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
covar() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
covar() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
covar_callback_default(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
covar_callback_default_arr - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
COVAR_DYNAMIC_RANGE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
covariance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth: The known covariance of the Gaussian noise
covariance - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: The known covariance of the Gaussian noise
covariance_matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
covariance_matrix_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
CovarianceAlgorithmType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.CovarianceAlgorithmType
CovarianceImpl(CeresSolver2.CovarianceOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
CovarianceImplTestComputeCovarianceSparsity() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceImplTestComputeCovarianceSparsityWithConstantParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceImplTestComputeCovarianceSparsityWithFreeParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
CovarianceSetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestComputeCovarianceFailure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestConstantParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestDenseCovarianceMatrixFromSetOfParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestDenseCovarianceMatrixFromSetOfParametersInTangentSpace() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestLocalParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestLocalParameterizationInTangentSpace() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestLocalParameterizationInTangentSpaceWithConstantBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestNormalBehavior() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CovarianceTestTruncatedRank() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
covarMat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 2D array of doubles of dimension nPts by max(4,param) containing the main part of the covariance matrix (Jtranspose * J)inverse, where J is the Jacobian matrix computed at a.
covclc(int[], double[], int[], double[][], int, int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
Covdet - Class in gov.nih.mipav.model.algorithms: Copyright (C) 2013-14 Andrea Vedaldi.
Covdet() - Constructor for class gov.nih.mipav.model.algorithms.Covdet
covdet_detector(float[][], boolean, Covdet.VlCovDetMethod, boolean, int, int, double, int, double, double, double, boolean, double, Covdet.vlCovDetDescriptorType, int, double, double, float[], float[], double[][], boolean, boolean, boolean, Vector<float[][]>, int, int, float, float, boolean, Vector<Covdet.VlScaleSpace>, Vector<Covdet.VlScaleSpace>, Vector<Float>, Vector<Float>, Vector<Float>, Vector<Float>) - Method in class gov.nih.mipav.model.algorithms.Covdet
Covdet.VlCovDet - Class in gov.nih.mipav.model.algorithms
Covdet.vlCovDetDescriptorType - Enum in gov.nih.mipav.model.algorithms
Covdet.VlCovDetExtremum2 - Class in gov.nih.mipav.model.algorithms
Covdet.VlCovDetExtremum3 - Class in gov.nih.mipav.model.algorithms
Covdet.VlCovDetFeature - Class in gov.nih.mipav.model.algorithms
Covdet.VlCovDetFeatureLaplacianScale - Class in gov.nih.mipav.model.algorithms
Covdet.VlCovDetFeatureOrientation - Class in gov.nih.mipav.model.algorithms
Covdet.VlCovDetMethod - Enum in gov.nih.mipav.model.algorithms
Covdet.VlFrameDisc - Class in gov.nih.mipav.model.algorithms
Covdet.VlFrameEllipse - Class in gov.nih.mipav.model.algorithms
Covdet.VlFrameOrientedDisc - Class in gov.nih.mipav.model.algorithms
Covdet.VlFrameOrientedEllipse - Class in gov.nih.mipav.model.algorithms
Covdet.VlFrameType - Enum in gov.nih.mipav.model.algorithms
Covdet.VlScaleSpace - Class in gov.nih.mipav.model.algorithms
Covdet.VlScaleSpaceGeometry - Class in gov.nih.mipav.model.algorithms
Covdet.VlScaleSpaceOctaveGeometry - Class in gov.nih.mipav.model.algorithms
coverage(double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
coverage_max(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
CovMatrix() - Constructor for class gov.nih.mipav.model.algorithms.libdt.CovMatrix: cache the matrix square-root of the covariance matrix.
CovMatrix(int, libdt.cov_type) - Constructor for class gov.nih.mipav.model.algorithms.libdt.CovMatrix
covopt - Variable in class gov.nih.mipav.model.algorithms.libdt.CovMatrix: < storage for the covariance matrix. full matrix is [n x n]; diagonal matrix is [n x 1]; iid matrix is [1 x 1].
CoxDeBoorBSplineKernelFunction - Class in gov.nih.mipav.model.structures
CoxDeBoorBSplineKernelFunction() - Constructor for class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
CoxDeBoorBSplineKernelFunction(int) - Constructor for class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
CoxDeBoorBSplineKernelFunctionTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
CoxDeBoorBSplineKernelFunctionTest2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
cp - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot: Example from source ContourPlot.java draws contour plot of function surface correctly.
cp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t2_t: pointer to the image coding parameters
cp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: coding parameters
cP() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
cP(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
Cp - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
Cp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
cp_layer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Set the maximum number of quality layers to decode.
cp_reduce - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Set the number of highest resolution levels to be discarded.
cP0(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cP1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cP2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cpAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
CParamDispVectors(CDVector, Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Wrapper to generate damp displacement vectors
CParamDispVectors(CDVector, Vector<CDVector>, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Generates a set combined model parameter displacement vectors where each parameter is displaced at a time according to the values in vStdDisp.
cpField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
cpGBC - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cpGBC - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cpGBC - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
cpGBC - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
cpGBC - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
cpGBL - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cpGBL - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cpGBL - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
cpGBL - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
cpGBL - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
cPhase - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cPhase - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
cPhase - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 260 Total cardiac phase prescribed.
cPhaseNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 646 Cardiac phase number.
CPJAC3(int, int, int, int[], double[], double[], double[], double[], double[], int[], int[], int[], int[], int[], double[], double[], double[], double[][], boolean[], int[], int[], double, int[], boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cplxpair(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
CQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
CQT - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
CQT - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
CQT2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
CQT2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
cquantize - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
cquantize2 - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
cr - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
cr - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
CR - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
Cr_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cr_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
Cr_r_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cr_r_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
Cr2 - gov.nih.mipav.model.file.MetadataExtractor.FileType: Canon camera raw, version 2.
cradius - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
craffine(double[][], double[], double[], SchwarzChristoffelMapping.qlgraph, double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
craffine_aff - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
craffine_wn - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CRC - Class in gov.nih.mipav.model.file: A simple class the hold and calculate the CRC for sanity checking of the data.
CRC() - Constructor for class gov.nih.mipav.model.file.CRC
crc32Table - Static variable in class gov.nih.mipav.model.file.CRC
crcdt(double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crcError() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
crdiskAccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crdiskCenter(SchwarzChristoffelMapping.scmap, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crdiskevalinv(SchwarzChristoffelMapping.scmap, double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crdiskmap(SchwarzChristoffelMapping.polygon, double, double[][], SchwarzChristoffelMapping.qlgraph) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crdiskplot(SchwarzChristoffelMapping.scmap, double[], double[], int, int, boolean, double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CRDOWN - Variable in class gov.nih.mipav.model.algorithms.CVODES
creal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
creal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
create - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
create() - Static method in class gov.nih.mipav.view.ViewUserInterface: This method should only be called once, and it should only be called by MipavMain to during the initialization of MIPAV.
create(int, int[], int) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
create(int, int[], int, int) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
create(int, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
create(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt
create(ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
Create() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: A factory that is used for operations that create new meshes from the current one.
Create(CeresSolver.EvaluatorOptions, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.LinearSolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.LineSearchDirectionOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.LineSearchType, CeresSolver.LineSearchOptions, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.MinimizerType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.Program, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Create(CeresSolver.TrustRegionStrategyOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
create_colorindex(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_colorindex8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_colorindex9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_colormap8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_colormap9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_contour_bboxes(VOIBaseVector) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
create_edge(LSCM.Vertex, LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
create_face(LSCM.Vertex[], int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
create_odither_tables(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
create_vertex(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
create2DRandImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
create3DRandImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
create3DVOI(boolean) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
create3DVOI(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
create3DVOI(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage
create3DVOI(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
create3DVOI(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
create3DVOI(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
createActiveContourBinaryMask(BitSet, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Creates a binary mask at every slice.
createADC - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createAdOpDialog(ActionListener) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Builds the advanced function dialog - looks like a calculator.
createAllDownButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createAllDownButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createAllLeftButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createAllLeftButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createAllListAButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: creates a button with either the image of an arrow (leftarrowcollection.gif) or with the text "Send All left" or "Send All up".
createAllListBButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: creates a button with either the image of an arrow (rightarrowcollection.gif) or with the text "Send all right" or "Send all down".
createAllRightButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createAllRightButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createAllTreeAButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: creates a button with either the image of an arrow (leftarrowcollection.gif) or with the text "Send All left" or "Send All up".
createAllTreeBButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: creates a button with either the image of an arrow (rightarrowcollection.gif) or with the text "Send all right" or "Send all down".
createAllUpButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createAllUpButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createAndRedistributePoints(ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
createAndRedistributePoints(ArrayList<Point>, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
createAnnotatePoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Create a new Annotation point at the position specified.
createAnnotatePoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Create a new Annotation point at the position specified.
createArray(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
createBinaryImage(ModelImage, boolean, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Forms a binary representation of the VOI into the image.
createBinaryMask(int, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Creates a binary mask at a slice for that slice only.
createBinaryMask(int, int, int, VOIBase) - Method in class gov.nih.mipav.model.structures.VOI: Creates a binary mask at a slice for that slice and element only.
createBinaryMask(int, int, int, BitSet, boolean, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Creates a binary mask at a slice.
createBinaryMask3D(BitSet, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Creates a 3D binary mask.
createBlankImage(FileInfoBase) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a blank Image based on the information found in the fileInfo object and places it in a frame.
createBlankImage(FileInfoBase, boolean, boolean) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a blank Image based on the information found in the fileInfo object.
CreateBlockDiagonalEtE() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
CreateBlockDiagonalFtF() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
CreateBlockDiagonalMatrix(double[], Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
CreateBlockDiagonalMatrixLayout(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
createBlurKernel() - Method in class gov.nih.mipav.model.GaussianKernelFactory
createBMatrixFile() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: create b-matrix file
createBMatrixFileDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the b-matrix file.
createBMatrixFileParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the B-Matrix file
createBoldLabel(String) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Creates a label in the proper (bold) font and color.
createBoundariesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
CreateBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Creates the bounding frames for the planes.
CreateBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox: Creates the bounding box Polylines.
CreateBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Called by CreateScene.
createBoxFrame(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Creates a new box frame with the given dimensions.
CreateBracketMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createBrainMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
createBranch(JMenu) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Helper method for creating sub-menus of the plugin.
createBranchConnectGeometry(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Get the geometry to be used for rendering the connection of the specified branch to its parent branch.
createBranchConnectGeometryScaled(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Get the geometry to be used for rendering the connection of the specified branch to its parent branch.
createBranchPathGeometry(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Get the geometry to be used for rendering the path of the specified branch.
createBranchPathGeometryScaled(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Get the geometry to be used for rendering the path of the specified branch.
createBranchPathGeometryScaled(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Get the geometry to be used for rendering the path of the specified branch.
createBranchPathGeometryScaled(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Translate the path points from image coordinate to view volume coordinate.
createBuffers() - Method in class gov.nih.mipav.view.ViewJFrameImage: Create the buffers for imageA and imageB.
createButton(String, JButton) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Makes a button.
createButtonComponent() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates a display of the buttons (eg, OK, CANCEL, HELP) for the dialog.
createBVGradBMatFileTXT() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: This method creates the B-Value/Gradient file for DTI Tab
createCanvas(Node, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Creates a canvas containing the input Node object, with the input viewing transformation.
createCanvas(JPanel) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: createCanvas - Creates the Canvas3D for rendering the images.
createCanvas3D() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Creates the canvas.
CreateCircle(int, int, Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: Creates the circle widget and control point:
CreateClipPlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Creates the clipping planes.
createColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createColorFunctionA(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
createColorFunctionB(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
createComboBox(Container, String[], int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates a combo box and adds it to the panel.
createComboBoxX(GridBagLayout, GridBagConstraints, JPanel) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Creates a combo box and adds it to the panel.
createComboBoxY(GridBagLayout, GridBagConstraints, JPanel) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Creates a combo box and adds it to the panel.
createComboBoxZ(GridBagLayout, GridBagConstraints, JPanel) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Creates a combo box and adds it to the panel.
createContainer(GLCanvas) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Creates the containing JPanel that will display this object.
createContainer(GLCanvas) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Creates the containing JPanel that will display this object.
createContext(ColorModel, Rectangle, Rectangle2D, AffineTransform, RenderingHints) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
createCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Create a copy of this instance.
createCopy() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Create a copy of this instance.
createCopy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Create a copy of this instance.
CreateCube() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Creates the orientation cube.
createCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
createDataSink(Processor, MediaLocator) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Create the DataSink.
createDataSink(Processor, MediaLocator) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: Create the data sink with the give processor and output media file location.
createDataSink(Processor, MediaLocator) - Static method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Create the DataSink.
createDecGui() - Method in class gov.nih.mipav.model.file.FileJP2
CreateDefaultLinearSolverOrdering(CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
createDeleteButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: creates a button with either the image of an 'X' (delete.gif) or with the text "delete selection".
createDeleteButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: creates a button with either the image of an 'X' (delete.gif) or with the text "delete selection".
createDerivedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Creates the images derived from the tensor image.
CreateDiagonalMatrix(double[], Vector<CeresSolver.Block>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createDICOMFilesCommandLineHelp - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
createDimArray(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Constructs the dimension array with the specified length.
createDirectory() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Create flythru directory to save the captured images from AVI recorder.
createDoGOperator(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
createDownButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createDownButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createDTIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Creates the user-interface for the Diffusion Tensor Image dialog.
createDWI() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
createDWIImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Second step in processing the diffusion weighted images.
createDWIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Creates the user-interface for the Diffusion Tensor Image dialog.
createEdgeLists(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Create the edges list from the given surface triangle mesh.
createEdgeLists(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Create the edges list from the given surface triangle mesh.
createEfficiencyImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
createEigenPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Creates the user-interface for the EigenVector FA dialog.
createEmptyImage() - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Can be used by constructors to create an empty 3D image.
createEmptyImage(FileInfoBase) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a blank Image based on the information found in the default fileInfo object.
createEmptyNode() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
createEmptyNodeInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
createEmptyNodeInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
createEmptyNodeInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
createEmptyNodeInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
createEmptyNodeInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
createEntryField(String) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: Builds a new JTextField, with the given String, sets its font (to MipavUtil.font12), sets the foreground colour (to Color.black), sets column width to 7, then returns the newly made JTextField.
createEntryField(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Builds a new JTextField, with the given String, sets its font (to MipavUtil.font12), sets the foreground colour (to Color.black), sets column width to 7, then returns the newly made JTextField.
CreateEvaluatePreparers(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
CreateEvaluatePreparers(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
CreateEvaluatePreparers(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseJacobianWriter
CreateEvaluatePreparers(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicCompressedRowJacobianWriter
createEvaluateStringName() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CreateEvaluator(CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
CreateEvaluatorScratch(CeresSolver.Program, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createEvaluatorTestOptions() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
createEValue - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createEVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createFA - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createFDivAImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
createFDivDImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Create the feature image using the parameters set by the four parameter-setting functions defined above.
createField - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
createField - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
createFieldCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
createFieldCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
createFileInfo(File) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
createFileSelectorComponent() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates a single JPanelFileSelector which refers to the file "dicomsave.dictionary" in the user.home (specified by java's properties) directory by default.
createFileSelectorComponent() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the basic layout of the file selectors to be used in the dialog.
createFilteredImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
createFilters() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
createFrame() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Creates the JFrame.
createFrame() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createFrame() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Creates as stand-alone dialog with the interface:
createFreeRangeArrays() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
createGabor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
createGabor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
createGabor - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
createGaborCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
createGattArray(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Constructs the global attribute array with the specified length.
createGeometry(Point3f[], Color4f[], int[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
createGlobalFFTKernelString(int, int, CLFFTPlan.CLFFTKernelDir, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
createGM_Laplace(ModelImage, ModelImage, GraphicsImage, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
createGOperator(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
CreateGradientCheckingCostFunction(CeresSolver.CostFunction, Vector<CeresSolver.LocalParameterization>, double, double, String, CeresSolver.GradientCheckingIterationCallback) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateGradientCheckingProblemImpl(CeresSolver.ProblemImpl, double, double, CeresSolver.GradientCheckingIterationCallback) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateGraph() - Method in class gov.nih.mipav.model.structures.jama.METIS
createGraphics() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a Graphics2D, which can be used to draw into this image.
createHanningWindow() - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
createHashtable() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates static hashtable to use to fill the tags in the dialog.
CreateHessianGraph(CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateHistogramMesh(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createIdentityMapControlPoints(BSplineBasisDiscretef) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Create optimal placement of control points for each dimension which yields the identity mapping of the source image, i.e., identity in that the output value to the Bspline function is the same as the input value.
createiImage(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
createImage() - Method in class gov.nih.mipav.model.file.FilePARREC: DOCUMENT ME!
createImageBorder() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: This method creates the compound image border array for each image in the light box.
createImageBorder(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: This method creates the compound image border array for each image in the light box.
createImageDeformation() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Generate an image which contains the deformation value at each sample in the target image as it relates to how the source image is transformed as a result of the registration.
createImageDeformation() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Generate an image which contains the deformation value at each sample in the target image as it relates to how the source image is transformed as a result of the registration.
createImageDisplacement() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Generate an image which contains the magnitude of the displacement vector at each sample in the target image as it relates to how the source image is transformed as a result of the registration.
createImageDisplacement() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Generate an image which contains the magnitude of the displacement vector at each sample in the target image as it relates to how the source image is transformed as a result of the registration.
CreateImageFromTexture(GraphicsImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Read the current Volume Texture from the GPU and return a new ModelImage of that data.
CreateImageFromTexture(GraphicsImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Copy the data from the input GraphicsImage and return a new ModelImage of that data.
createImageMap(int, int) - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Create an image of the specified dimensions and fill it to contain a mapping of the coordinates based on the 2D lattice of B-spline control points.
createImageMap(int, int, int) - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Create an image of the specified dimensions and fill it to contain a mapping of the coordinates based on the 3D lattice of B-spline control points.
CreateImageMesh(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createImageNormals(float[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Create array of normal vectors corresponding to the voxels in the volume.
createImagePointTable(JDialogProstateSegmentationRegBSpline3D.Edge, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Convert each image pixel to polar coordinate system, saved them in a table.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behaviors to the scene, and a branch groups under the transform group for the texture-mapped polygon.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Creates the scene graph.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Build the root of the burning point branch group, and attached the root to the parent scene root transform group.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behavior and lights to the scene, and three branch groups under the transform group for each of the three image planes.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behavior and lights to the scene, and three branch groups under the transform group for each of the three image planes.
createImageSceneGraph() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behavior and lights to the scene, and three branch groups under the transform group for each of the three image planes.
createImageSceneGraph(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Create Java3D image scene graph structure.
createImageSourceMap() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Generate an image the size of the target image in which each sample contains the 2D interpolated point coordinates in the source image which "maps" or is registered with the corresponding point in the target image.
createImageSourceMap() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Generate an image the size of the target image in which each sample contains the 3D interpolated point coordinates in the source image which "maps" or is registered with the corresponding point in the target image.
CreateImageTextures() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createImg(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Creates the Java image to be displayed from the model image.
createImg(int) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Creates the Java image to be displayed from the model image.
createImg(int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Creates the Java image to be displayed from the model image.
createInputImageParameter(boolean) - Method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Creates a new image parameter for the action's input image, determining whether it needs to be externally-specified or will be generated from another script action.
createInputPanel(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: creates the main panel with all the inputs.. argument true includes preferences if available.
createInputParameters() - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in #setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.BlankJistHook
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialog3DMosaicTo4DSlices.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogActiveContoursWithoutEdges.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAdaptiveKuwaharaFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAGCIE.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAHE.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAHElocal.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAINDANE.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAntigradient2.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAutoCorrelation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAutoCovariance.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogAutoSeedWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBGAndFGDistanceMap.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBGDistanceMap.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBilateralFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBM3D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBorderClearing.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBottomHat.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBoxCount.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBrainSurfaceExtractor.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogBRISK.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogCannyEdgeDetection.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogClose.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogCoherenceEnhancingDiffusion.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogConcat.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogContrastEnhancementUsingExposureFusion.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogConvergenceField.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogConvert3Dto4D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogConvert4Dto3D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogCropBoundaryParam.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogCropPointParam.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogCyclicPermutation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDBSCANClusteringSegment.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDeconvolution.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDeleteObjects.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDemonsLite.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDilate.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogDistanceMap.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEdgeDetection3D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEdgeLaplacian.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEdgeNMSuppression.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEdgePreservingSmoothing.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEfficientWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEntropicEdgeDetection.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogEntropyMinimization.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogErode.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogExtractBrain.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFaceAnonymize.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFaceAnonymizerBET.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFacetModel.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFFT.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFillObjects.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFindEdges.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFIREEdgeExtraction.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFlip.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFrequencyFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFuzzMinDeAndChatterji.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFuzzyCMeans.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFuzzyConnectednessSegmentation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogFuzzyMinimization.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGaborFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGaussianBlur.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGenerateGrid.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGenerateIsolines.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGradientInverseWeightedSmoothing.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGradientMagnitude.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGraphBasedSegmentation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogGuidedFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHaralickTexture.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHarrisCornerDetector.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHarrisLaplace.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHillClimbingWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHistogramMatch.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHistogramSummary.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHomomorphicFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogHurstIndex.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogIAGCWD.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogIDObjects.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogIHN3Correction.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogImRegPOC.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogInsertMissingSlices.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogInvert.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogIsophoteCurvature.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogKernelRegression.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLaplacian.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLawsTexture.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLLE.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLocalVariance.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLowerCompletion.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogLuminanceAdaptation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMarkovSegment.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMarkovSmooth.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMean.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMedian.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMidsagittal.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMode.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMorphologicalFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMorphologicalGradient.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMorphologicalLaplacian.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMorphologicalReconstruction.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMosaicToSlices.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMultiResolutionBilateralFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogMultiResolutionGuidedFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogN4MRIBiasFieldCorrection.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNLMeans_filt2D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNLNoiseReduction.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNMSuppression.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNoise.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNoiseLevel.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogNonlocalMeansFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogOpen.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogParticleAnalysisNew.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogPbBoundaryDetection.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogPhasePreservingDenoising.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogPowerWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogPrincipalComponents.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRegistrationBSpline.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRegistrationOAR2D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRegistrationOAR3D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRegPatientPos.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRegularizedIsotropicDiffusion.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogReorient.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogReplaceBlankSlicesWithAverages.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogReplaceValue.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogReslice.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRotate.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogRuleBasedContrastEnhancement.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogScaleSaliency.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSCDSegmentation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogScriptableTransform.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSequentialScanningWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogShortestPathWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogShowCosts.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSimulatedExposureFusion.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSkeletonize.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSM2.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSobel.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSplitAndMergeWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSubsample.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSubset.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSwap34.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSwapDims.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSwapSlicesVolumes.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSWI.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogSymmetricNearestNeighbor.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTamuraTexture.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTextureSegmentation.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogThinning2D.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTiltCorrection.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTopHat.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTransformBSpline.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTreT1.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogTrilateralFilter.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogUnionFindComponentLabelling.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogUnionFindWatershed.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogUnsharpMask.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogVesselEnhancement.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogWaveletFuse.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogWaveletMultiscaleProducts.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in JDialogWaveletThreshold.setGUIFromParams()).
createInputParameters() - Method in class gov.nih.mipav.view.dialogs.MTryJistHook
createIntensityImage() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Create a new image with the same dimensions as this image which contains the intensity value from this image if it is a color image or which contains the same values if the image is already an intensity image.
createIntensityImage(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Create a new image with the same dimensions as this image which contains the intensity value from this image if it is a color image or which contains the same values if the image is already an intensity image.
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseJacobianWriter
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
CreateJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
CreateJacobianBlockSparsityTranspose() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
createJava3dLight() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Access Java3D light instance based on current type.
createJava3dLightDirection() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Create an instance which contains the normalized real space coordinates of the direction vector of the (Java3D) Light.
createJava3dLightPosition() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Create an instance which contains the normalized real space coordinates for the position of the (Java3D) Light.
createKCenterImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
createKernel() - Method in class gov.nih.mipav.model.GaussianKernelFactory
createKernel() - Method in interface gov.nih.mipav.model.KernelFactory
createKernelList() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
createkImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
createLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Helper method to create a label with the proper font and font color.
createLabel(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Creates a label in the proper font and color.
createLabel(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Creates a label in the proper font and color.
createLabel(String) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Creates a label in the proper font and color.
createLabel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Creates a label in the proper font and color.
createLabel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Creates a label in the proper font and color.
createLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Helper method to create a label with the proper font and font color.
createLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Helper method to create a label with the proper font and font color.
createLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Helper method to create a label with the proper font and font color.
createLabel(String) - Static method in class gov.nih.mipav.view.ViewJSlider: Helper method to create a label with the proper font and font color.
createLabel(String, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Creates a label in the proper font and color.
createLabel(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Creates a label in the proper font and color.
createLabel(String, Container, int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Makes a label and adds it to the panel.
createLabel(String, GridBagLayout, GridBagConstraints, JPanel) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Makes a label and adds it to the panel.
CreateLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Creates the TriMesh data structures for the axis arrows.
CreateLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Creates the TriMesh data structures for the axis arrows.
createLeftButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createLeftButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
CreateLinearLeastSquaresProblemFromId(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createListAButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: creates a button with either the image of an arrow (leftarrow.gif) or with the text "Send left" or "Send up".
createListBButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: creates a button with either the image of an arrow (rightarrow.gif) or with the text "Send right" or "Send down".
createListComponent() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the List Controller, and its associated lists, links them, and builds a horizontal display for all three using the default JPanelListController.createListControllerDisplay(JPanelListController) method.
createListControllerDisplay(JPanelListController) - Static method in class gov.nih.mipav.view.JPanelListController: Creates a simple List controller display. one with the the given controls and with the orientation defined by the control panel.
createListFile() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: create list file
createListFileDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the list file.
createListFileParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the list file.
createLocalMemfftKernelString() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
createLookTable() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
createLoops() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
createLUT() - Method in class gov.nih.mipav.model.file.FileAvi: Creates a LUT to write.
createLUTFromSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Creates a LUT for the surface, where the curvature values are used in the look-up table instead of the ModelImage values:
createLUTFromSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Creates a LUT for the surface, where the curvature values are used in the look-up table instead of the ModelImage values:
createManifestFile() - Method in class gov.nih.mipav.plugins.ManifestFile
createMappedImage2d(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Create a mapping of this image.
createMappedImage3d(ModelSimpleImage, ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Create a mapping of this image.
createMask(int) - Method in class gov.nih.mipav.model.structures.ModelImage: Creates mask and maskBU of new length.
createMask(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
createMask(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
createMask(Plane3f, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
createMask(TriMesh, boolean, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
createMaskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
createMaskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
createMaskImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Create the mask image.
createMatrixFromAfni(ArrayList<Float>) - Static method in class gov.nih.mipav.model.structures.TransMatrix
createMediaLocator(String) - Static method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: Create a media locator from the given string.
createMenu() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
createMesh(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
createMesh(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
createModel() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Creates a DefaultListModel and populates it with shortcuts read from a file in user's home directory.
createModelImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: create result model image
createModelImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: create result model image
createModifyDialog() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creates a dialog box in which the user can modify various features of the graph.
createMosaicOpenDialog(boolean) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: createMosaicOpenDialog - Creates a file open dialog for image files (.jpg, tiff, etc.).
createMouseControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Creates the mouse control panels.
createMultifile(FileInfoBase, ModelImage, String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO
createNeuriteSurface(VOIContour, ColorRGB, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
createNew() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Create a new instance of this measure.
createNew() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Create a new instance of this measure.
createNew() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Create a new instance of this measure.
createNew() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Create a new instance of this measure.
createNewLogModel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: This method resets the logModel in preparation for writing new statistics values
createNewMesh(ModelTriangleMesh, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: creates a new mesh after triangulation or when a mesh is cut along the geodesic.
createNewMesh(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: creates a new mesh after triangulation or when a mesh is cut along the geodesic.
createNewTracts() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
createNodes() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Creates nodes on the tree based on DICOMDIR
createOME() - Method in class gov.nih.mipav.model.file.FileInfoOME: DOCUMENT ME!
createOneContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
createOneContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
createOneContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
createOneContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
createOneContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
createOneElementBinaryMask3D(BitSet, int, int, boolean, boolean, int) - Method in class gov.nih.mipav.model.structures.VOI: Creates a 3D binary mask.
createOnePixelBorder(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
createOrderDialog() - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
CreateOrdering(CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createOutputParameters() - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.BlankJistHook
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
createOutputParameters() - Method in class gov.nih.mipav.view.dialogs.MTryJistHook
createOvalVOI(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
createPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Makes a panel with a grid layout with the parameters specified.
createPanel() - Method in class gov.nih.mipav.view.JFrameHistogram: Creates the display panel.
createPanel(boolean) - Method in class gov.nih.mipav.view.JFrameHistogram
createPartitionedMatrixView(CeresSolver.LinearSolverOptions, CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createPath(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: createPath starts with the results of Dijkstra's minimum path algorithm.
createPath(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: createPath starts with the results of Dijkstra's minimum path algorithm.
createPathButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: create path planning path button.
createPathFile() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: create path file
createPathFileDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the path file.
createPathFileForInterleavedDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the path file for interleaverd datasets
createPathFileParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method creates the path file
createPatientPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates the panel for the patient tab.
createPauseDialog(ActionListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
createPDFElement(PDPageContentStream) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph: Creates PDF elements that will be appended to the content stream.
CreatePlaneNode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
CreatePlaneNode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
CreatePlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Creates the scene graph.
createPNumberDialog(ActionListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
createPointVOI(int[], int[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
createPolygonVOI(int[], int[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
createPolyline(ModelImage, Vector<Vector3f>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: Create the polyline from the given polyline coordinates vector.
createPolyline(VertexBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
createPopup(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
createPossibleSplitVarSubset(Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
CreatePreconditioner(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver
CreatePreprocessor(CeresSolver.MinimizerType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createPrivateKeyTree(ModelImage, Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Method to populate the tree structure from the input image and provided sequence tags.
createProcDirAndImageSlicesDirParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this method creates the proc dir in which the list file, path file, and b-matrix file go.
createProcDirDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this method creates the proc dir in which the list file, path file, and b-matrix file go.
createProcessor(File, MovieMaker.ImageDataSource) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Create video processor from the given source image files and output file.
createProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect
createProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
createProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
createProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
createProgressBar(FileBase, String, String) - Method in class gov.nih.mipav.model.file.FileIO: Creates the progress bar and links (if not null) the progress bar to a FileBase for reading/writing if the progress bar should not be updated within the FileBase's readImage/writeImage, pass in null to the fBase and update within FileIO's read[ImageType] or write[ImageType] methods.
createProgressBar(String, AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Creates the progress bar that will listen to an algorithm's progress changes
createProgressBar(String, AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Creates the progress bar that will listen to an algorithm's progress changes
createProgressBar(String, String, AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Creates the progress bar (should be created within JDialog's callAlgorithm method
createProgressBar(String, String, AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Creates the progress bar (should be created within JDialog's callAlgorithm method
createPSet(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Creates a new parameter set with a description.
createPublicKeyTree(ModelImage, Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags: Method to populate the tree structure from the input image and provided sequence tags.
createRA - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
CreateRandomMatrix(CeresSolver.BlockSparseMatrixRandomMatrixOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateRandomMatrix(CeresSolver.TripletSparseMatrixRandomMatrixOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateRandomMatrix(CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
createRaster(int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteArrayReaderTest
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessStreamReaderTest
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialByteArrayReaderTest
createReader(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.StreamReaderTest
CreateReducedProgram(Vector<double[]>, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
createRegCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
createRegCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
createRegCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
createRegCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
createRegImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
createRemoteImg(BufferedImage) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates an Img sharing the specified BufferedImage's data.
CreateRenderTarget(GLAutoDrawable, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Creates the three render-to-texture targets for rendering semi-transparent surfaces.
CreateRenderTarget(GLAutoDrawable, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
CreateRenderTargetInit(GLAutoDrawable, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createRequiredPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates the panel of required tags.
createReverseCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Create a copy of this instance which has the same information except that the state of the moving forward is inverted.
createReverseCopy() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Create a copy of this instance which has the same information except that the state of the moving forward is inverted.
createReverseCopy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Create a copy of this instance which has the same information except that the state of the moving forward is inverted.
createRGBImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: test code for creating rgb image based on eigvev and anisot
createRightButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createRightButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createSameMapping(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Create a new registration with the same mapping as this one and which uses the same source image and the same BSpline basis degree and number of control points.
createSameMapping(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Create a new registration with the same mapping as this one and which uses the same source image and the same BSpline basis degree and number of control points.
createSameMapping(ModelSimpleImage, BSplineBasisf, BSplineBasisf) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Create a new registration with the same mapping as this one and which uses the same source image and a possibly resampled target image, however, this time the BSpline basis degree and/or the number of control points may be different.
createSameMapping(ModelSimpleImage, BSplineBasisf, BSplineBasisf, BSplineBasisf) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Create a new registration with the same mapping as this one and which uses the same source image and a possibly resampled target image, however, this time the BSpline basis degree and/or the number of control points may be different.
createSamplePlane(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
createScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Called by the init() function.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Called by the init() function.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Initializes the display parameters.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Initializes the display parameters.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay: Create the scene.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode: Creates the scene graph.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Called by the init() function.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Creates the scene graph.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Called by the init() function.
CreateScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called by the init() function.
CreateScene(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createSceneGraph(float, Material) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Creates the rendered spheres, setting the apprearance, material properties, and transparency.
CreateSchurComplementGraph(Vector<HashSet<Integer>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
createSchurEliminatorBase(CeresSolver.LinearSolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
createScriptTree(String[], String[], String[], int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
createScriptTree(Document) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
createSelectedIcon(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
createSeriesPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates the panel for the series tab.
createServerSocket() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Creates the initial server socket binded to the given port.
createShortImage(ModelImage, int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Creates a short image of the VOI.
createShortMask(short[], int, int, int, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Creates a short mask at a slice.
createSlices(OrderedGroup, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Create the z-axis aligned slices through the volume so that any rotation of the volume does not result in the slices getting clipped by the texture volume.
createSliderLabel(String) - Static method in class gov.nih.mipav.view.MipavUtil: Creates a label in the proper font and color.
createSliderLabel(String) - Static method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.
createSoftwareLight(Point3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Access software light instance based on current type.
createSoftwareLightModel() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Access current software light based on type.
createSoftwareLightWorld() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Access current software light based on type.
CreateSparseDiagonalMatrix(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
CreateSquare(int, int, Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget: Creates the square widget and control points:
createStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
createStructuringElement2D() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: make the structuring element for morphology.
createStructuringElement3D() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: make the structuring element for morphology.
createStudyPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates the panel for the study tab.
createSubDirsInRegisteredDir(File) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
createSurface(ModelTriangleMesh[], Color4f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Creates a surface in the scene graph from an array of triangle meshes.
createSurface(SurfaceAttributes, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Creates a surface in the scene graph from an array of triangle meshes.
createTargetDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: First time this dialog is called, init() will be called to create the GUI.
createTargetDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: First time this dialog is called, init() will be called to create the GUI.
createTargetDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: First time, the dialog is invoked, the init() method is called to create the GUI.
createTask(ModelImage, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Parallel processing the automatic segmentation algorithm to all the three images concurrently.
createTask(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Parallel processing the automatic segmentation algorithm to all the three images concurrently.
createTensorWeights() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Creates the weighted data for the tensor calculation from the diffusion weighted images.
createTerrain() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
createTerrain() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
createTerrain(double[], double, double, double, int, int, double, double, double, int, int, double, double, double, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
createTerrain(double, double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
createTerrain(float[], float, float, float, int, int, float, float, float, int, int, float, float, float, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
createTerrain(float, float, float, float, float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
CreateTest(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Tests if a file can be created for writing.
createTestImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
createTestingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
createTestingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
createTestingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
createTestingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
createTestingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
createTextField(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Helper method to create a text field with the proper font and font color.
createTexture() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Create a single 3D texture coordinate generation function.
createTexturedImage() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: createTexturedImage is added so that the size of the texture used to display the rendered image on the texture-mapped polygon can be changed dynamically.
createTexturedPolygon() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Creates the texture-mapped polygon displayed in the stereo canvas.
createTexturedPolygon(TransformGroup, BufferedImage, int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: createTexturedPolygon - Creates a texture-mapped polygon with the BufferedImage displayed as the texture.
createTextVOI(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Creates a new VOIText at the local point.
createTrace - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createTractDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Creates the user-interface for the Fiber Bundle Tract dialog.
createTractPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Creates the user-interface for the Fiber Bundle Tract panel.
createTrainingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
createTrainingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
createTrainingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
createTrainingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
createTrainingPatches() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
createTransferable(JComponent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
createTransferable(JComponent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
CreateTransformMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
createTreeAButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: creates a button with either the image of an arrow (leftarrow.gif) or with the text "Send left" or "Send up".
createTreeBButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: creates a button with either the image of an arrow (rightarrow.gif) or with the text "Send right" or "Send down".
createTreeControllerDisplay(JPanelTreeController) - Static method in class gov.nih.mipav.view.JPanelTreeController: Creates a simple Tree controller display. one with the the given controls and with the orientation defined by the control panel.
createTreeFromDictionary() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
CreateTriangle(int, int, Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Creates the triangle widget and control points:
createTriangleMesh(Point3f[], Vector3f[], Color4f[], int[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
createTube(VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
createTube(Polyline) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Generate the tube streamline from the given polyline.
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
createTwoContours(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
createUByteImage(ModelImage, int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Creates a short image of the VOI.
createUIComponents() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
createUpButton(boolean) - Method in class gov.nih.mipav.view.JPanelListController: convenience Method.
createUpButton(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController: convenience Method.
createVarArray(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Constructs the variable array with the specified length.
createVattArray(int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Creates a new variable attribute array.
createVOI(int, boolean, boolean, Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Creates a new VOI Contour based on the input type.
createVOI(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
createVOI(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Creates a new VOI Contour or adds a new point to the existing VOI Contour.
createVoiImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
createVOIPointTable(JDialogProstateSegmentationRegBSpline3D.Edge, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Create the VOI table in polar coodinate system.
createVolumeMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Creates a BitSet mask that is the volume enclosed by the triangle mesh.
createVolumePolyline(VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
createVolumeTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Creates a 3D Texture object for the ModelImage displayed in the SurfaceRender object.
CreateVolumeTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: The VolumeShaderEffect.CreateVolumeTexture() function constructs and initializes the vertex and pixel shader programs for volume rendering.
CreateVolumeTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic: The VolumeShaderEffect.CreateVolumeTexture() function constructs and initializes the vertex and pixel shader programs for volume rendering.
CreateVolumeTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages: The VolumeShaderEffect.CreateVolumeTexture() function constructs and initializes the vertex and pixel shader programs for volume rendering.
createVolumeVOI(VolumeImage, Vector3f) - Method in class gov.nih.mipav.model.structures.VOIBase: Creates the VolumeVOI data structure for rendering this contour in the GPU VolumeRenderer
createVR - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
createWatershedCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
createWatershedLines - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
createWatershedLines - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
createWMLight() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Access Java3D light instance based on current type.
createXDerivativeKernel() - Method in class gov.nih.mipav.model.GaussianKernelFactory
createYDerivativeKernel() - Method in class gov.nih.mipav.model.GaussianKernelFactory
createZDerivativeKernel() - Method in class gov.nih.mipav.model.GaussianKernelFactory
creationDate - Variable in class gov.nih.mipav.model.file.FileInfoCZI
creationDate - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: Elements.
creatorID - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
CreeLifoVide(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
CreeRbtVide(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
crembed(double[], SchwarzChristoffelMapping.qlgraph, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CReverse() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CReverse: Creates a new CReverse object.
CReverse() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CReverse: Creates a new CReverse object.
cReverseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cReverseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
crfixwc - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crfixwc(double[][], double[], double[], double[][][], SchwarzChristoffelMapping.qlgraph, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crfixwc_mt - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crfixwc_quadnum - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crgather(double[][], int[], int, double[], SchwarzChristoffelMapping.qlgraph, double[][][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crimap0(double[][], double[][], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crinvmap(double[][], double[][], double[], double[], double[][][], int, double[][], SchwarzChristoffelMapping.qlgraph, double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CRIRGBFilter - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
crit - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams
CRITCO(int, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
crmap(double[][], double[][], double[], double[], double[][][], int, double[][], SchwarzChristoffelMapping.qlgraph, double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crmap0(double[][], double[][], double[], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crNum - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Used to number XRay image file names so that they are numbered differently.
crop() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
crop() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
crop() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
cropAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
cropAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
cropAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
cropAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
cropAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
cropAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
cropAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: DOCUMENT ME!
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: crop image algorithm
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: crop margin algorithm.
cropAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: crop margin algorithm.
cropBackground - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
cropBackground - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
cropBackground - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
cropBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
cropBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
cropBackground - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
cropCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
cropCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
cropCheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
cropClipVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Crop the region of the clipped volume.
cropClipVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Crop the region of the clipped volume.
cropClipVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Crop the clipped volume.
cropColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Crop Bounding Box Colors:.
cropImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
cropImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: DOCUMENT ME!
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: result cropped image.
cropImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: result cropped image.
cropImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: When we to NMI based image similarity measure, we crop the prostate 2D slice image first, then apply the measure.
cropImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: When we to NMI based image similarity measure, we crop the prostate 2D slice image first, then apply the measure.
cropImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Crop image for SVM classification.
cropImage(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
cropImage(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cropImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cropImage_ext(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cropImage_ext(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cropImage_ext(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cropImage_ext(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cropImage_ext(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cropImage_randomSample(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
cropImage_randomSample(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
cropImage_randomSample_voi_region(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
cropImage_randomSample_voi_region(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
cropImage_slidingWindow(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
cropImage_slidingWindow(ModelImage, ModelImage, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped key image, crop from 512x512 to central prostate gland region.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: cropped key image vector.
cropKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: cropped key image vector.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Crop the central prostate gland region from the 512x512 slices.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Crop key images.
cropKeyImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Crop key images.
cropKeyImagesCE - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped CE image vector.
cropOrPad - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
cropPoints - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Crop Bounding Box in Screen Coordinates:.
cropRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
cropROI(ModelImage, int[], int[], int[], int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Crop MR image with specified X, Y, Z bounds Use the mid slice as the initial guidance to find the bounds.
cropROI(ModelImage, int[], int[], int[], int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Crop MR image with specified X, Y, Z bounds Use the mid slice as the initial guidance to find the bounds.
cropTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
cropTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cropTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cropTargetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
cropTargetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
cropTargetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
cropTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Crop the target image 2D slice to focus on central gland.
cropTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Crop the target image 2D slice to focus on central gland.
cropTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Crop target image for SVM classification.
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cropVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cropVolume() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Mask the clipped volume region with image min intensity value.
cross(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Cross(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
CROSS_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: cross (+).
CROSS_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: cross (2D only).
CROSS_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: cross (2D only).
cross_validation - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
cross_validation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
cross_validation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
crosshairButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
crosshairChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
crosshairCursor - Static variable in class gov.nih.mipav.view.MipavUtil: A crosshair cursor.
crosshairCursor - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Crosshair cursor that can be changed per user preference (in Mipav Options).
crosshairCursor - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
crosshairCursor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Crosshair mouse cursor.
crosshairNames - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
crosshairPixelGap - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: the gap (in one direction) between the center of the crosshair and the actual crosshair line
crosshairPt - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: The x and y coordinate of the cursor position in screen space of this component.
crosshairSpinner - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Spinner component for the crosshair gap size.
crossProduct(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni: Finds crossproduct of two vectors.
crossProduct(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Finds crossproduct of two vectors.
CrossProduct(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Forms the cross product of two vectors and store the result in this.
CrossProduct(Point3D, Point3D, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
CrossProduct(Point3D, Point3D, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
crossrat(double[][], SchwarzChristoffelMapping.qlgraph) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crossratio - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
CROSSRATIO_POLYGON_TO_CIRCLE - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CROSSRATIO_POLYGON_TO_CIRCLE - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
CROSSRATIO_POLYGON_TO_RECTANGLE - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CROSSRATIO_POLYGON_TO_RECTANGLE - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
crossRatioCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
crossRatioCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
crossVal - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: The crossover gray scale value at which u(crossVal) = 0.5
crossVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
crossVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
crossValidation(Problem, Parameter, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
crossValidationTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
crossValidationTestExtra() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
crossValidationTestExtra() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
crossValidationTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
CrossVector(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
CrossVector(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
crparam(double[][], double[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crparam_beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crparam_cr - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crparam_qdata - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crpfun(double[], int, double[], double[][], SchwarzChristoffelMapping.qlgraph, double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
crplot(double[][], double[], double[], double[][][], int, double[][], SchwarzChristoffelMapping.qlgraph, double[], double[], int, int, int, boolean, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crpsdist(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crpsgd(double[], double[], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crqgraph(double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crqgraph_Q - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crquad(double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrect(double[][], double[][][], double[][], double[], double[], double[][][], SchwarzChristoffelMapping.qlgraph, double[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrectmap(double[][], int[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrectplot(SchwarzChristoffelMapping.scmap, double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
CrReferenceBlack - Variable in class gov.nih.mipav.model.file.FileSVS
CrReferenceBlack - Variable in class gov.nih.mipav.model.file.FileTiff
CrReferenceWhite - Variable in class gov.nih.mipav.model.file.FileSVS
CrReferenceWhite - Variable in class gov.nih.mipav.model.file.FileTiff
crrmap(double[][][], int[][], double[][], double[][], double[], double[][], double[], double[], double[][][], double[][][], SchwarzChristoffelMapping.qlgraph, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrplot(double[][], double[], double[][], double[], double[], double[][][], double[][][], SchwarzChristoffelMapping.qlgraph, double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrplot0(String, double[], double, double, int, double, double[][], double[], double[][], double[], double[], double[][][], double[][][], SchwarzChristoffelMapping.qlgraph, double[][], double[][], double[], double, Vector<Double>[][], Vector<Double>[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crrsort(Vector<Double>[], Vector<Double>[], int[][], SchwarzChristoffelMapping.qlgraph) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
crRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
crsm - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
CRSMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix
crsplit(double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crsplit_neww - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crsplit_orig - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crspread(double[][][], double[][][], double[][], int, double[], SchwarzChristoffelMapping.qlgraph) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.crStop: Creates a new crStop object.
crStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.crStop: Creates a new crStop object.
crtarget - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
crtedge_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
crtriang(double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crtriang_edge - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crtriang_edgetri - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
crtriang_triedge - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
Crw - gov.nih.mipav.model.file.MetadataExtractor.FileType: Canon camera raw, version 1.
Crx - gov.nih.mipav.model.file.MetadataExtractor.FileType: Canon camera raw (version 3).
cs - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
CS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
CsaImageAcquisitionMatrixText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageBandwidthPerPixelPhaseEncode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageEchoColumnPosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageEchoLinePosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageEchoPartitionPosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageGSWDDataType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageICE_Dims - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageImaAbsTablePosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageImaCoilString - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageImaPATModeText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageImaRelTablePosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageMeasuredFourierLines - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageMosaicRefAcqTimes - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageMultistepIndex - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageNonPlanarImage - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageNumberOfImagesInMosaic - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImagePhaseEncodingDirectionPositive - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageProtocolSliceNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageRealDwellTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageRFSWDDataType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageSequenceMask - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageSliceMeasurementDuration - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageSliceNormalVector - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageSlicePosition_PCS - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageTimeAfterStart - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaImageUsedChannelMask - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
csAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: DOCUMENT ME!
CsaSeriesAbsTablePosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesB1rms - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesB1rmsSupervision - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesCoilForGradient - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesCoilForGradient2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesCoilId - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesCoilString - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesdBdt_limit - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesdBdt_max - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesdBdt_thresh - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesFlowCompensation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesGradientDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesGradientMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesIsocentered - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesLongModelName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMiscSequenceParam - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolacFlowComp0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoladFlipAngleDegree0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolalTE0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolalTR0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnbValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnflFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnlRxChannel - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlElementSelected - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlRxChannelConnected - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDlCoilCopy - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtCoilID - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtElement - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0iUsedRFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSauiNmbrOfNibbles - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSaulPlugId - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolasCoilSelectMeas0tNucleus - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoldAveragesDouble - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoldRefSNR - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoldRefSNR_VOI - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollAverages - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollCombinedEchoes - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollContrasts - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollParadigmPeriodicity - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollProtID - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollRepetitions - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollScanTimeSec - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollTOM - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocollTotalScanTimeSec - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedInPlaneRot - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedPhaseFOV - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedReadoutFOV - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreProtRelated - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjMDSMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjProtID - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjRFMapMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjShimMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjTableTolerance - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjVolumeValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAdjDatauiAdjWatSupMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAngiolDynamicReconMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAngiolTemporalInterpolation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAngioucPCFlowMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAngioucTOFInflow - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAslulMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsAutoAligndAAMatrix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsBladeParadBladeCoverage - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsBladeParaucMotionCorr - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsDiffusionulMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsDistortionCorrFilterucMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsEFISPECbEFIDataValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglEchoTrainDuration - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglEPIFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglSegments - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglShots - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglSliceTurboFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImaginglTurboFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsFastImagingucSegmentationMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbB0CompensationValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbCrossTermCompensationValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbDelayValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbEddyCompensationValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbOffsetValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbSensitivityValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECbShimCurrentValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECflGSWDMinRiseTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityX - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityY - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityZ - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClDelayX - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClDelayY - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClDelayZ - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClOffsetX - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClOffsetY - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPEClOffsetZ - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant4 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGRADSPECucMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGroupArrayanMember - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGroupArrayasGroup0nSize - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGroupArraylSize - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGroupArraysPSatdGap - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsGroupArraysPSatdThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacedAngioDynCentralRegionA - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacedAngioDynSamplingDensityB - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacedPhaseResolution - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacedSeqPhasePartialFourierForSNR - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacedSliceResolution - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelBaseResolution - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelImagesPerSlab - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelLinesPerShot - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelPartitions - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelPhaseEncodingLines - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelRadialInterleavesPerImage - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpacelRadialViews - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucAsymmetricEchoMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucAveragingMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucDimension - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucMultiSliceMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucPhasePartialFourier - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucPOCS - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucSlicePartialFourier - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucTrajectory - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceucViewSharing - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsKSpaceunReordering - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSdMdsRangeExtension - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSlmdsLinesPerSegment - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSlTableSpeedNumerator - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSsMdsEndPosSBCS_mmdTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSulMdsModeMask - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSulMdsReconMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsMDSulMdsVariableResolution - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsNavigatorParalBreathHoldMeas - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsNavigatorParalRespComp - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsParametricMappingucParametricMap - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatlAccelFact3D - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatlAccelFactPE - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatlRefLinesPE - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatucPATMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatucRefScanMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPatucTPatAverageAllFrames - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglMethod1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglMethod2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglPhases - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglRetroGatedImages - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglSignal1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImaginglSignal2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlArrhythmiaDetection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOffThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOnThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerIntervals - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerPulses - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerWindow - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlArrhythmiaDetection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOffThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOnThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerIntervals - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerPulses - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerWindow - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucFlowSenMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselArrhythmiaDetection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOffThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOnThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerIntervals - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerPulses - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerWindow - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioRespdGatingRatio - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGatePhase - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGateThreshold - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodFlipAngle - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesdIRPulseThicknessFactor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesdT2PrepDuration - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucFatSat - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucFatSatMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucInversion - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucSatRecovery - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucT2Prep - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucTIScout - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsPrepPulsesucWaterSat - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfoflGMax - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfoflNominalB0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfoflRiseTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfolMaximumNofRxReceiverChannels - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfotBaselineString - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsProtConsistencyInfotSystemType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRawFilterlSlope_256 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRawFilterucMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRawFilterucOn - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0dThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRSatArraylSize - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRXSPECalDwellTime0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRXSPECbGainValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsRXSPEClGain - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayanAsc - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayanPos - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdInPlaneRot - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdPhaseFOV - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdReadoutFOV - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondCor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondSag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondTra - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArraylConc - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArraylSize - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArraysTSatdThickness - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSliceArrayucMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalAutoRefScanNo - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalDecouplingType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalExcitationType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalNOEType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalPhaseCyclingType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalPhaseEncodingType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalRFExcitationBandwidth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalSpecAppl - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParalSpectralSuppression - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsSpecParaucRemoveOversampling - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnbAmplitudeValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnflAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEntName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bAmplitudeCorrectionValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bFrequencyValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bReferenceAmplitudeValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bRFPAIndexValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flAmplitudeCorrection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flReferenceAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0lFrequency - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0tNucleus - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bAmplitudeCorrectionValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bFrequencyValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bReferenceAmplitudeValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bRFPAIndexValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1flAmplitudeCorrection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1lRFPAIndex - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECbKDynValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipHigh - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipLow - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMax - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMin - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseClip - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseMax - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPEClBCExcitationMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPEClBCSeqExcitationMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPEClNoOfTraPulses - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECucBCExcitationModeValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECucExcitMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECucRFPulseType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsTXSPECucSimultaneousExcitation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsWiPMemBlockadFree - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsWiPMemBlockalFree - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolsWiPMemBlocktFree - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltdefaultEVAProt - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltProtocolName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltReferenceImage0 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltReferenceImage1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltReferenceImage2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocoltSequenceFileName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucAAMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucAARefMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucAARegionMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucAutoAlignInit - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucBold3dPace - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucBOLDParadigmArray - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucCineMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucCoilCombineMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucDisableChangeStoreImages - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucDixon - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucDixonSaveOriginal - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucEnableIntro - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucEnableNoiseAdjust - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucFlipAngleMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucForcePositioningOnNDIS - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucInteractiveRealtime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucInternalTablePosValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucOneSeriesForAllMeas - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucPHAPSMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucReadOutMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucReconstructionMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucScanRegionPosValid - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucSequenceType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucTablePositioningMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolucWaitForPrepareCompletion - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolulVersion - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrPhoenixProtocolWaitForUserStart - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesMrProtocolVersion - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesNumberOfPrescans - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesOperation_mode_flag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesPATModeText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesPatReinPattern - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesPhaseGradientAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesPositivePCSDirections - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesProtocolChangeHistory - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesReadoutGradientAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesReadoutOS - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesRelTablePosition - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesRFSWDMostCriticalAspect - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesRFSWDOperationMode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesRfWatchdogMask - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSARMostCriticalAspect - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSed - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSelectionGradientAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSequenceFileOwner - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSliceArrayConcatenations - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSliceResolution - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesStim_faktor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesStim_lim - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesStim_max_ges_norm_online - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesStim_max_online - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesStim_mon_mode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesSW_korr_faktor - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriest_puls_max - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesTablePositionOrigin - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesTalesReferencePower - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CsaSeriesTransmitterCalibration - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
CSB_LENGTH - Static variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream: Length of Colour Specification Box
CSCAL3(double[], int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
csfThresholdMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Cerebrospinal Fluid (CSF) maximum threshold :
csfThresholdMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Cerebrospinal Fluid (CSF) minimum threshold :
cSig - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SigSet
csIgnoreBox - Variable in class gov.nih.mipav.model.file.FileJP2
cSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
cSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
csMap - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Parses the inputstream to analyze the box structure of the JP2 file.
csMap - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Parses the inputstream to analyze the box structure of the JP2 file.
CSqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Poly
css - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < Gaussian scale space.
CSTATE_RAW_OK - Static variable in class gov.nih.mipav.model.file.libjpeg
CSTATE_SCANNING - Static variable in class gov.nih.mipav.model.file.libjpeg
CSTATE_START - Static variable in class gov.nih.mipav.model.file.libjpeg
CSTATE_WRCOEFS - Static variable in class gov.nih.mipav.model.file.libjpeg
cStoreRq - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_StdStorage: Store request object.
cStoreRsp - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_StdStorage: Store response object.
cstr_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: helper used to write the index file
csty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: coding style
csty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: coding style
csty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: coding style
csty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t: coding style
csvdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
ct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: coder : number of bits free to write. decoder : number of bits read
ct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
ct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: number of bits already read or free to write
ct - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
CT - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: CT predefined tranfer function.
ctButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button for presets used only for CT images.
ctDialog - Variable in class gov.nih.mipav.view.JPanelHistogram
ctDialogA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Reference to CT dialog.
ctDialogA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
ctDialogB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Reference to CT dialog.
ctDialogB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
CTEST(int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double, int, int, int, int, boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
cText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
ctf(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ctMode(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Sets mode to CT and sets range to CT presets.
ctMode(int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Sets mode to CT and sets range to CT presets.
ctMode(int, int) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Sets mode to CT and sets range to CT presets.
ctrl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: ctrl can have 3 different values on entry.
ctrl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: ctrl can have 3 different values on entry.
ctrl_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
ctrlBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
ctrlKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
ctrlKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
ctrlKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
ctrlMat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Wrapper for ctrl or lctrl communication with driver.
ctrlMat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Wrapper for ctrl or lctrl communication with driver.
CTX_POSTPONED_ROW - Variable in class gov.nih.mipav.model.file.libjpeg
CTX_PREPARE_FOR_IMCU - Variable in class gov.nih.mipav.model.file.libjpeg
CTX_PROCESS_IMCU - Variable in class gov.nih.mipav.model.file.libjpeg
ctxs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
ctype - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
CTYPE1 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CTYPE2 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CTYPE3 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CTYPE4 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CTYPE5 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CTZ - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Int denoting CTZ sequence
cu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cu2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
Cube - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes
Cube() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
CUBE_BOUNDS - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
CUBE_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: (3D only).
CUBE_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: (3D only).
CubeBounds - Class in gov.nih.mipav.model.structures: Title: CubeBounds
CubeBounds(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.structures.CubeBounds: Creates a new CubeBounds object.
cubePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Panel for the rotation cube.
cubePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Panel for the rotation cube.
cubePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Panel for the rotation cube.
cubic - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
cubic - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
cubic - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Radio buttons for interpolation methods.
CUBIC - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
CUBIC - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Cubic interpolation mode.
CUBIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Action command for cubic interpolation.
CUBIC_BSPLINE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Cubic b-spline interpolation mode.
CUBIC_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
cubic_interpolation_cell(double[], double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Cubic interpolation in one dimension
CUBIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Cubic lagrangian interpolation.
CUBIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Cubic lagrangian interpolation.
cubic_root(double) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
cubic_root(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
cubicBehaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The cubic roational behavior branch group.
cubicBehaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The cubic roational behavior branch group.
cubicBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Cubic branch group.
cubicBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Cubic branch group.
cubicButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
cubicCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Check box for cubic control.
cubicCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Check box for cubic control.
cubicCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Check box for cubic control.
cubicCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
CubicEquation - Class in gov.nih.mipav.model.algorithms: This is a port of code written by Gerolamo Cardano under the Code Project Open Licence.
CubicEquation() - Constructor for class gov.nih.mipav.model.algorithms.CubicEquation
CubicEquation(double, double, double, double, double[], double[], double[], double[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.CubicEquation
CubicHermiteSpline(int, double[], double[], double[], double[], double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
CubicInterpolator(CeresSolver2.Grid1D) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CubicInterpolator
CubicInterpolatorTestConstantFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CubicInterpolatorTestLinearFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CubicInterpolatorTestQuadraticFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
cubicLagrangian2D(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: 2D cubic Lagrangian function.
cubicLagrangian2DC(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: 2D cubic Lagrangian function for color.
cubicLagrangian3D(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: 3D cubic Lagrangian function.
cubicLagrangian3DC(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: 3D cubic Lagrangian function for color (3 channel images).
cubicReslice() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslices the data into isotropic voxels using one of two interpolation methods (cubic Bspline or cubic convolution).
cubicRotate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Cubic mouse rotation behavior.
cubicRotate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Cubic mouse rotation behavior.
cubicTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Cubic transform group.
cubicTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Cubic transform group.
CUBOID_EXTREMA - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
CUBOID_EXTREMA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
cuboidCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
cullBackBottomLeft() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the back bottom left corner is at position 0 in the reorderedList.
cullBackBottomRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the back bottom right corner is at position 0 in the reorderedList.
cullBackTopLeft() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the back top left corner is at position 0 in the reorderedList.
cullBackTopRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the back top right corner is at position 0 in the reorderedList.
cullFrontBottomLeft() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the front bottom left corner is at position 0 in the reorderedList.
cullFrontBottomRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the front bottom right corner is at position 0 in the reorderedList.
cullFrontTopLeft() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the front top left corner is at position 0 in the reorderedList.
cullFrontTopRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Creates a re-mapping of the cube corners so the front top right corner is at position 0 in the reorderedList.
culling - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Back face culling enabled or not.
culling - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning surface being culled ( back face bulling ) or not.
cullPoints(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: 1.
cumf(double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
CumSum(CDVector, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Cumulative sum of elements.
cumtrapz(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cumulative_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
CumulativeCenterCount(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CUNIT1 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CUNIT2 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CUNIT3 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CUNIT4 - Variable in class gov.nih.mipav.model.file.FileInfoFits
CUNIT5 - Variable in class gov.nih.mipav.model.file.FileInfoFits
cur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
cur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
CUR - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .cur.
cur_callocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
cur_comp_info - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
cur_hallocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
cur_marker - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
cur_method - Variable in class gov.nih.mipav.model.file.libjpeg.my_idct_controller
cur_pino - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: Current Packet iterator number
cur_start_row - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
cur_start_row - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
cur_totnum_tp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: Total number of tileparts of the current tile
cur_tp_num - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: Current tile part number
curAdjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
curAdjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
curctx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
curev - Class in gov.nih.mipav.model.algorithms
curev(int, double[], int, double[], int, int, double[], int, double[], int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.curev
curfit - Class in gov.nih.mipav.model.algorithms
curfit() - Constructor for class gov.nih.mipav.model.algorithms.curfit
curfit(int, int, double[], double[], double[], double, double, int, double, int, int[], double[], double[], double[], int, int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.curfit
curPercent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
currContourCost - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
currDir - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: current directory
currDir - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: current directory *
currDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: current directory *
currDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: current directory *
curRefMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
curRefMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
current - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
current - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
current - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
current - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Label that gives current value of slider.
current - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
current - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: index to the item list.
current - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Current event vector index.
current - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: index to the item list.
current - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Current event vector index.
current - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
current - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
current_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
current_nb_tps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: current nb of tile part (allocated)
current_tpsno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: current tile-part index
current_value - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
current_value - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
current2 - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
current2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
current2 - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
current2 - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
currentAbsolutePositionLabels - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: The current values of the absolute position labels.
currentAnnotationTableRow - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
currentButton - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: DOCUMENT ME!
currentCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState
currentChar - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
currentChar - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
currentColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Restores the VOI color button after QuickLUT.
currentColorWheelType - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: String indicating current color wheel type *
currentColorWheelType - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: String indicating current color wheel type *
currentCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Description of the cost function being performed
currentCostFunct - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: The current cost function
currentDataMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
currentDateL - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
currentDeformedSubject - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
currentDeformField - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
currentDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
currentDownSampleFactor - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
currentElem - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
currentElement - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
currentEntry - Variable in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: the current provenance entry (to be inserted into the holder)
currentEvent - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: DOCUMENT ME!
currentEvent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: DOCUMENT ME!
currentEventVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Current event vector used by the save AVI.
currentEventVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Current event vector used by the save AVI.
currentFrame - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
currentFrame - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
currentFuzzy - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
currentImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: The current DWI image in the pipeline
currentImageNumber - Variable in class gov.nih.mipav.model.scripting.ImageVariableTable: The number to use for the next image placeholder variable to be added to the table.
currentIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Current surface index being highlighted.
currentInputImageLabelNumber - Variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Counter used to track the number of input images stored (aka used) by an algorithm.
currentJointST - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
currentKey - Variable in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
currentKey - Variable in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.view.dialogs.MyXMLHandler: The current XML tag we are parsing.
currentKey - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Current XML keyword:.
currentKey - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Current XML keyword:.
currentKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Current XML keyword:.
currentKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Current XML keyword:.
currentKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: The current XML tag we are parsing.
currentLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Value of current slider number.
currentLength - Variable in class gov.nih.mipav.model.structures.IntVector: The number of valid data elements added to the vector.
currentLevel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
currentLevelIdx - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
currentLocation - Variable in class gov.nih.mipav.model.file.FileMetaImage
currentLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
currentMaskNumberIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this represents the current index of the btArrayList
currentMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
currentName - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: DOCUMENT ME!
currentName - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
currentNumberOfControlPoints - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
currentObject - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: current SceneState object being recorded by SaveAVI.
currentObject - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: current SceneState object being recorded by SaveAVI.
currentOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
currentOpacity - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: saved opacity parameter when hiding the paint
currentOpacity - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Displays current opacity level in slider
currentOrientation - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
currentPage - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Page information.
currentParameterName - Variable in class gov.nih.mipav.model.file.XMLPSet: Current parameter name.
currentPath - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
currentPSetDesc - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: String for the current PSet description (for key).
currentRecognizedCode - Variable in class gov.nih.mipav.model.file.FileSVS
currentRecognizedCode - Variable in class gov.nih.mipav.model.file.FileTiff
currentRectangle - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: rectangle for screen capture*
currentRectangle - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: The rectangle that will be captured from the screen to save to a file.
currentRectangle - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: The rectangle that will be captured from the screen to save to a file.
currentRectangle - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: rectangle for screen capture*
currentResolutionIdx - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
currentResultImageSlicesLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
currentResultImageSlicesLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
currentScriptComboBox - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The combo box containing the possible choices for the current script in the script toolbar.
currentScriptLineNumber - Variable in class gov.nih.mipav.model.scripting.ParserEngine: The number of the current (or last if not currently parsing) line being parsed (1-based).
currentSeconds - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
currentSelectedScript - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The script currently selected in the scripting toolbar (null if no script is selected).
currentSelectedSlice - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
currentSelectedSlice - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
currentShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: Keystroke built from shortcut editor dialog.
currentShortcut - Static variable in class gov.nih.mipav.view.Preferences: The current shortcut
currentSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
currentSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The slice number the VOI is in.
currentSlice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
currentSlice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Used for 3D loop control.
currentSlice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Used for 3D loop control.
currentSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens
currentSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
currentSlice - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: current info -- this slice info refers to the *real* slice number, not the page index for a slice on a page.
currentSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
currentSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet
currentSlice - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Current info -- this slice info refers to the *real* slice number, not the page index for a slice on a page.
currentSlice - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
currentState - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
currentSurfacePath - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: Used to keep track of the current surface.
currentText - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
currentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Current transform3D object used in Save AVI.
currentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Current transform3D object used in Save AVI.
currentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Current transform matrix.
currentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Current transform matrix.
currentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Current transform matrix.
currentTransformType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Current transform changes type.
currentTransformType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Current transform changes type.
currentTransType - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Current transform type.
currentTSlice - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
currentViewPort - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
currentVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState
currentVOIPath - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: Used to keep track of the current VOI.
currEventTime - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Current mouse press event time stamp.
currEventTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: current and previous key press time.
currEventTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Current mouse press event time stamp.
currEventTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: current and previous key press time.
currEventTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: current and previous key press time.
currImage - Static variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: The buffered image selected by the user
currXform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
curScriptFile - Variable in class gov.nih.mipav.model.scripting.ScriptRunner.ScriptThread: The file name of the script to execute in this thread.
cursorIndex - Variable in class gov.nih.mipav.view.JPanelHistogram: Active mouse cursor index of the imageA, B and GM image A, B.
cursorIndex - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Active mouse cursor index of the imageA, B and GM image A, B.
cursorIndex - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Active mouse cursor index of the imageA, B and GM image A, B.
cursorIndexB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Active mouse cursor index of the imageA, B and GM image A, B.
cursorIndexB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Active mouse cursor index of the imageA, B and GM image A, B.
cursorMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: curreent cursor nevigation mode.
cursorMode - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Used to describe the cursor mode.
curvature - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
curvatureNormals - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
curve - Variable in class gov.nih.mipav.model.structures.UpdateVOIEvent: DOCUMENT ME!
curve - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map.curvePair
curve - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair
curve - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
CURVE_FITTING_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
curveChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.CurveListener: CurveListener are updated whenever a curve changes in the LatticeModel.
curveChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
CurveCostFunction(int, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveCostFunction
CurveFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveFittingCostFunction
curveFittingData - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CurveFittingFunctorExample() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CurveFittingFunctorExample
curveFittingObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
curveIntersect(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
curveintersect_local(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
curveList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
CurveListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
curveListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
curvePair(VOIBase, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map.curvePair
curvePair(VOIBase, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair
curves - Variable in class gov.nih.mipav.model.structures.VOI: A vector array of curves per slice.
curvesList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
curvesPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
curvesTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
curveTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
curveType - Variable in class gov.nih.mipav.model.structures.VOI: Indicates the type of VOI (i.e.
curveVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
curX - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
curY - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
curz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < current z location of the patches (z of the first frame of the patch).
curZ - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
cushion - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Extra space around VOI in x and y dimensions.
CUSTOM - gov.nih.mipav.view.ViewJSlider.SliderType
CUSTOM - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
CUSTOM - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
CUSTOM - Static variable in class gov.nih.mipav.view.ViewJSlider
custom_padd(int[], double[][], int, int, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
CustomAlpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
customBlendGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Multihistogram panel:
CustomBlendMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
CustomCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.CustomCellRenderer: Creates a new CustomCellRenderer object.
CustomHashtable<V> - Class in gov.nih.mipav.model.structures: CustomHashtable extends the Hashtable class and adds some methods for generating keys for new elements to the Hashtable.
CustomHashtable() - Constructor for class gov.nih.mipav.model.structures.CustomHashtable: Constructs a new, empty hashtable with a default capacity and load factor, which is 0.75.
CustomHashtable(int) - Constructor for class gov.nih.mipav.model.structures.CustomHashtable: Constructs a new, empty hashtable with the specified initial capacity and default load factor, which is 0.75.
CustomHashtable(int, float) - Constructor for class gov.nih.mipav.model.structures.CustomHashtable: Constructs a new, empty hashtable with the specified initial capacity and the specified load factor.
CustomHashtable(Map<String, V>) - Constructor for class gov.nih.mipav.model.structures.CustomHashtable: Constructs a new hashtable with the same mappings as the given Map.
customLUTsLocation - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Opens and returns a buffered reader for a given custom LUT name.
customLUTsLocation - Static variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.
customProcessTag(int, Set<Integer>, int, MetadataExtractor.RandomAccessReader, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
customProcessTag(int, Set<Integer>, int, MetadataExtractor.RandomAccessReader, int, int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler
customRegionComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
customRegionEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
customRendered - Variable in class gov.nih.mipav.model.file.FileSVS
customRendered - Variable in class gov.nih.mipav.model.file.FileTiff
CustomUIBuilder - Class in gov.nih.mipav.view
CustomUIBuilder() - Constructor for class gov.nih.mipav.view.CustomUIBuilder
CustomUIBuilder.UIParams - Class in gov.nih.mipav.view: Class that holds the parameters for creating/catching common buttons and menu items
custx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
custy_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
cut() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Cut the m_kModified mesh.
cut() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Cut the m_kModified mesh.
cut() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
cutGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Calls the Geodesic cut function to cut the triangle mesh along the geodesic curves.
cutGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Calls the Geodesic cut function to cut the triangle mesh along the geodesic curves.
cutOff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
cutOffPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cutOffPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
cutOffPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cutOffPointInner - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cutOffPointInner - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
cutOffPointInner - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cutOffPointOuter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cutOffPointOuter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
cutOffPointOuter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
CV_64F - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_64FC - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_64FC1 - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_64FC3 - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_8U - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_8UC - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_8UC1 - Variable in class gov.nih.mipav.model.algorithms.libdt
cv_acnrm - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acnrmQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acnrmQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acnrmS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acor - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acorQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acorQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_acorS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ADAMS - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_adj - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_adj_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_adjMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ALLSENS - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BAD_DKY - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BAD_IS - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BAD_K - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BAD_T - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BAD_TB0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_BDF - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_CENTERED - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_CONV_FAILURE - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_convfail - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_crate - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_crateS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_DQrhomax - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_DQtype - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_e_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_EE - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_efun(CVODES.NVector, CVODES.NVector, CVODES.UserData, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cv_efun_select - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_eh_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ERR_FAILURE - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_errconQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_errconQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_errconS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_errfp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_est_parGV_peak1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cv_est_parGV_peak2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cv_eta - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_etamax - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_etaq - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_etaqm1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_etaqp1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ewt - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ewtQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ewtQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ewtS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_f - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_f - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_f_withSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
CV_FAIL_BAD_J - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FAIL_OTHER - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FIRST_QRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FIRST_QSRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FIRST_RHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FIRST_SRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_forceSetup - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_FORWARD - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_fQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_fQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fQ_withSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_fQS_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fQSDQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fS_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_fSDQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ftemp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ftempQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ftempS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_FUNCTIONAL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_FWD_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_gactive - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_gamma - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_gammap - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_gamrat - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_GETY_BADT - Static variable in class gov.nih.mipav.model.algorithms.CVODES
cv_gfun - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ghi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_glo - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_grout - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_h - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_h0u - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_HERMITE - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_hin - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_hmax_inv - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_hmin - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_hprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_hscale - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_hu - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ifS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ILL_INPUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_index - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_indx_acor - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_irfnd - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_iroots - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ism - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_iter - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_itol - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_itolQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_itolQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_itolS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_jcur - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_l - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_L - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lfree - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_lfree(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cv_lfree_select - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_linit(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CV_LINIT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_linit_select - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_liw - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_liw1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_liw1Q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lmem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_lmem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lmm - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lrw - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lrw1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lrw1Q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lsetup(CVODES.CVodeMemRec, int, CVODES.NVector, CVODES.NVector, boolean[], CVODES.NVector, CVODES.NVector, CVODES.NVector, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CV_LSETUP_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_lsetup_select - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_lsolve(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CV_LSOLVE_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_lsolve_select - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_MallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_maxcor - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_maxcorS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_maxncf - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_maxnef - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
CV_MEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_MEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_mnewt - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_mxgnull - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_mxhnil - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_mxstep - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ncfn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ncfnS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ncfnS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ncfS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_netf - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_netfQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_netfQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_netfS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_NEWTON - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_next - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_next_h - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_next_q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfe - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfeS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfQe - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfQeS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfQSe - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nfSe - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nge - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nhnil - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nlscoef - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_NN - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_nni - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nniS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nniS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_NO_ADJ - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_BCK - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_FAILURES - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_FWD - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_MALLOC - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_QUAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_QUADSENS - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_NO_SENS - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_nor - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_NORMAL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_nrtfn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_Ns - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nscon - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nsetups - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nsetupsS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nst - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_nstlp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ONE_STEP - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_ONESENS - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_p - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_pbar - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_plist - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_POLYNOMIAL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qmax - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qmax_alloc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qmax_allocQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qmax_allocQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qmax_allocS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_QRHSFUNC_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_QSRHSFUNC_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_qu - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_QuadMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_quadr - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_quadr_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_QuadSensMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_qwait - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_REDUCE_AVG - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_REDUCE_MAX - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_REDUCE_MIN - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_REDUCE_SUM - Variable in class gov.nih.mipav.model.algorithms.libdt
CV_REIFWD_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_reltol - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_reltolQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_reltolQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_reltolS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_REPTD_QRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_REPTD_QSRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_REPTD_RHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_REPTD_SRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_RHSFUNC_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_rl1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_ROOT_RETURN - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_rootdir - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_RTFUNC_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_Sabstol - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SabstolQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SabstolQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SabstolQSMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SabstolS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SabstolSMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_saved_tq5 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_SensMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_SIMULTANEOUS - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_sldeton - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_SRHSFUNC_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_SS - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_ssdat - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_STAGGERED - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_STAGGERED1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_stgr1alloc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_SUCCESS - Static variable in class gov.nih.mipav.model.algorithms.CVODES
CV_SV - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_t0 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_taskc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tau - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tempv - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tempvQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tempvQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tempvS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_thi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tlo - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tolsf - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_TOO_CLOSE - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_TOO_MUCH_ACC - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_TOO_MUCH_WORK - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_tout - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_toutc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tq - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tretlast - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_trout - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_tstop - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_TSTOP_RETURN - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_tstopset - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_ttol - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_UNREC_QRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_UNREC_QSRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_UNREC_RHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_UNREC_SRHSFUNC_ERR - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_uround - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_user_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_user_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_user_efun - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_Vabstol - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolQMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolQSMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_VabstolSMallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CV_WARNING - Variable in class gov.nih.mipav.model.algorithms.CVODES
CV_WF - Variable in class gov.nih.mipav.model.algorithms.CVODES
cv_y - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
cv_y - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_yQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_yQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_yS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_zn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_znQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_znQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cv_znS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
cV0(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cV1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cV2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
CVAbckpbDelete(CVODES.CVodeBMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAckpntDelete(CVODES.CkpntMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAckpntGet(CVODES.CVodeMemRec, CVODES.CkpntMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVAckpntInit(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVAckpntNew(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
cvAdamsFinish(CVODES.CVodeMemRec, double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvAdamsStart(CVODES.CVodeMemRec, double[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAdataStore(CVODES.CVodeMemRec, CVODES.CkpntMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVadjCheckPointRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec
CVadjMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
cvAdjustAdams(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvAdjustBDF(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvAdjustOrder(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvAdjustParams(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAfindIndex(CVODES.CVodeMemRec, double, long[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteFree_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteGetY(CVODES.CVodeMemRec, double, CVODES.NVector, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteGetY_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteMalloc(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVAhermiteMalloc_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVAhermiteStorePnt(CVODES.CVodeMemRec, CVODES.DtpntMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVAhermiteStorePnt_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvAllocVectors(CVODES.CVodeMemRec, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvAltSum(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialFree_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialGetY(CVODES.CVodeMemRec, double, CVODES.NVector, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialGetY_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialMalloc(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVApolynomialMalloc_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVApolynomialStorePnt(CVODES.CVodeMemRec, CVODES.DtpntMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVApolynomialStorePnt_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVArhs(double, CVODES.NVector, CVODES.NVector, CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVArhs_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVArhsQ(double, CVODES.NVector, CVODES.NVector, CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVArhsQ_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvB_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
cvBDFStab(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvChooseEta(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvCompleteStep(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvComputeEtaqm1(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvComputeEtaqp1(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVD_DGMAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVD_MSBJ - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDecreaseBDF(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_ILL_INPUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_JACFUNC_RECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_JACFUNC_UNRECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_LMEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_LMEMB_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_MEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_MEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_NO_ADJ - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_SUCCESS - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDLS_SUNMAT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsDenseDQJac(double, CVODES.NVector, CVODES.NVector, double[][], CVODES.CVodeMemRec, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsDQJac - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsFree_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsFreeB(CVODES.CVodeBMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsFreeB_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDlsGetWorkSpace(CVODES.CVodeMemRec, long[], long[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsInitialize(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsInitialize_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsInitializeCounters(CVODES.CVDlsMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsJacBWrapper(double, CVODES.NVector, CVODES.NVector, double[][], CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsJacBWrapper_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsLapackSetup_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsLapackSolve_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
CVDlsMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
CVDlsMemRecB() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRecB
CVDlsSetJacFn(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVDlsSetJacFnB(CVODES.CVodeMemRec, int, int) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVDlsSetLinearSolver(CVODES.CVodeMemRec, CVODES.SUNLinearSolver, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVDlsSetLinearSolverB(CVODES.CVodeMemRec, int, CVODES.SUNLinearSolver, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
cvDlsSetup(CVODES.CVodeMemRec, int, CVODES.NVector, CVODES.NVector, boolean[], CVODES.NVector, CVODES.NVector, CVODES.NVector, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsSetup_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDlsSolve(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvDlsSolve_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvDoErrorTest(CVODES.CVodeMemRec, int[], double, double, int[], long[], double[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
Cvec() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Cvec
Cvec_to_sbins(SIFT3D.Cvec, SIFT3D.Svec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cverberOff - Variable in class gov.nih.mipav.model.file.FileJP2
cverberOn - Variable in class gov.nih.mipav.model.file.FileJP2
cVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Vertex array.
CVertices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
cvEwtSet(CVODES.NVector, CVODES.NVector, CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvEwtSet_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvEwtSetSS(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvEwtSetSV(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvEwtUser_select1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
cVFp() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
cVFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cvFreeVectors(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvHandleFailure(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvHandleNFlag(CVODES.CVodeMemRec, int[], double, int[], long[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvHin(CVODES.CVodeMemRec, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvIncreaseBDF(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvInitialSetup(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVisDMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: * AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
CVisDMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
CVisDMatrix(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
CVisDMatrix(int, int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
CVisDMatrix(int, int, double[][]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
CVisDMatrix(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
CVisDVector - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: * AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
CVisDVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
CVisDVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
CVisDVector(int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
CVisDVector(CVisDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
CVisRect - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: CVisRect * AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
CVisRect() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
CVisRect(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
CVisRect(CVisRect) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
CVisRect(POINT, POINT) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
CVisRect(POINT, SIZE) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
CVisRGBA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: * AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
CVisRGBA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
CVisRGBA(byte) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
CVisRGBA(byte, byte, byte) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
CVisRGBA(byte, byte, byte, byte) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
CVisRGBA(CVisRGBA) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
CVisShape - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: INTERNAL EXTERNAL VISSHAPE Objects derived from which also contain a number of bands.
CVisShape() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
CVisShape(int, int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
CVisShape(CVisShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
CVisShape(POINT, SIZE, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
CVisShape(RECT, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
cvNewtonIteration(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvNls(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvNlsFunctional(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvNlsNewton(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVode(CVODES.CVodeMemRec, double, CVODES.NVector, double[], int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeAdjFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeAdjInit(CVODES.CVodeMemRec, int, int) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeB(CVODES.CVodeMemRec, double, int) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeBMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CVodeBMemRec
CVodeCreate(int, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeCreateB(CVODES.CVodeMemRec, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeF(CVODES.CVodeMemRec, double, CVODES.NVector, double[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeGetAdjCheckPointsInfo(CVODES.CVodeMemRec, CVODES_ASA.CVadjCheckPointRec[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetAdjCVodeBmem(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetAdjY(CVODES.CVodeMemRec, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetB(CVODES.CVodeMemRec, int, double[], CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetDky(CVODES.CVodeMemRec, double, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeGetNumSteps(CVODES.CVodeMemRec, long[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetQuad(CVODES.CVodeMemRec, double[], CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetQuadB(CVODES.CVodeMemRec, int, double[], CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetQuadDky(CVODES.CVodeMemRec, double, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeGetRootInfo(CVODES.CVodeMemRec, int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeGetSens(CVODES.CVodeMemRec, double[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeGetSensDky(CVODES.CVodeMemRec, double, int, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeGetSensDky1(CVODES.CVodeMemRec, double, int, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeInit(CVODES.CVodeMemRec, int, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeInitB(CVODES.CVodeMemRec, int, int, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CVodeMemRec
CVodeQuadFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeQuadInit(CVODES.CVodeMemRec, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadInitB(CVODES.CVodeMemRec, int, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadReInit(CVODES.CVodeMemRec, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadReInitB(CVODES.CVodeMemRec, int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadSensFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeQuadSensReInit(CVODES.CVodeMemRec, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadSStolerances(CVODES.CVodeMemRec, double, double) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeQuadSStolerancesB(CVODES.CVodeMemRec, int, double, double) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeReInit(CVODES.CVodeMemRec, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeReInit(CVODES.CVodeMemRec, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeReInitB(CVODES.CVodeMemRec, int, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeRootInit(CVODES.CVodeMemRec, int, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVODES - Class in gov.nih.mipav.model.algorithms
CVODES() - Constructor for class gov.nih.mipav.model.algorithms.CVODES
CVODES_ASA - Class in gov.nih.mipav.model.algorithms
CVODES_ASA() - Constructor for class gov.nih.mipav.model.algorithms.CVODES_ASA
CVODES_ASA.CVadjCheckPointRec - Class in gov.nih.mipav.model.algorithms
CVODES.CkpntMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.CVadjMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.CVDlsMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.CVDlsMemRecB - Class in gov.nih.mipav.model.algorithms
CVODES.CVodeBMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.CVodeMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.DtpntMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.HermiteDataMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.NVector - Class in gov.nih.mipav.model.algorithms
CVODES.PolynomialDataMemRec - Class in gov.nih.mipav.model.algorithms
CVODES.SUNLinearSolver - Class in gov.nih.mipav.model.algorithms
CVODES.SUNLinearSolver_Type - Enum in gov.nih.mipav.model.algorithms
CVODES.UserData - Class in gov.nih.mipav.model.algorithms
CVodeSensEEtolerances(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSensFree(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSensInit1(CVODES.CVodeMemRec, int, int, int, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSensReInit(CVODES.CVodeMemRec, int, CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSetIterType(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSetMaxErrTestFails(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSetMaxNumSteps(CVODES.CVodeMemRec, long) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSetQuadErrConB(CVODES.CVodeMemRec, int, boolean) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSetSensDQMethod(CVODES.CVodeMemRec, int, double) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSetSensParams(CVODES.CVodeMemRec, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSetStopTime(CVODES.CVodeMemRec, double) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSetUserDataB(CVODES.CVodeMemRec, int, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSStolerances(CVODES.CVodeMemRec, double, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeSStolerancesB(CVODES.CVodeMemRec, int, double, double) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
CVodeSVtolerances(CVODES.CVodeMemRec, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
CVodeWFtolerances(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvPredict(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvPrepareNextStep(CVODES.CVodeMemRec, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvProcessError(CVODES.CVodeMemRec, int, String, String, String, double...) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadAllocVectors(CVODES.CVodeMemRec, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
cvQuadEwtSet(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadEwtSetSS(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadEwtSetSV(CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadFreeVectors(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadNls(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensEwtSet(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensEwtSetEE(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensEwtSetSS(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensEwtSetSV(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensFreeVectors(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensNls(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensNorm(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensRhs1InternalDQ(CVODES.CVodeMemRec, int, double, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensRhsInternalDQ(int, double, CVODES.NVector, CVODES.NVector[], CVODES.NVector, CVODES.NVector[], CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadSensUpdateNorm(CVODES.CVodeMemRec, double, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvQuadUpdateNorm(CVODES.CVodeMemRec, double, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRcheck1(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRcheck2(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRcheck3(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRescale(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRestore(CVODES.CVodeMemRec, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvRootfind(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
Cvs - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < indicates am empty Dt
cvsAdvDiff_FSA_non - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvsDirectDemo_ls_Problem_1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvSensAllocVectors(CVODES.CVodeMemRec, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensEwtSet(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensEwtSetEE(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensEwtSetSS(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensEwtSetSV(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensFreeVectors(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensNorm(CVODES.CVodeMemRec, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhs1InternalDQ(int, double, CVODES.NVector, CVODES.NVector, int, CVODES.NVector, CVODES.NVector, CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhs1InternalDQ_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhs1Wrapper(CVODES.CVodeMemRec, double, CVODES.NVector, CVODES.NVector, int, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhsInternalDQ(int, double, CVODES.NVector, CVODES.NVector, CVODES.NVector[], CVODES.NVector[], CVODES.CVodeMemRec, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhsInternalDQ_select - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvSensRhsWrapper(CVODES.CVodeMemRec, double, CVODES.NVector, CVODES.NVector, CVODES.NVector[], CVODES.NVector[], CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSensUpdateNorm(CVODES.CVodeMemRec, double, CVODES.NVector[], CVODES.NVector[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSet(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSetAdams(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSetBDF(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSetEta(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSetTqBDF(CVODES.CVodeMemRec, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvSLdet(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvsRoberts_ASAi_dns - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvsRoberts_dns - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvsRoberts_dns_uw - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvsRoberts_dnsL - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvsRoberts_FSA_dns - Variable in class gov.nih.mipav.model.algorithms.CVODES
cvStep(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgr1NewtonIteration(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgr1Nls(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgr1NlsFunctional(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgr1NlsNewton(CVODES.CVodeMemRec, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgrNewtonIteration(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgrNls(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgrNlsFunctional(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvStgrNlsNewton(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvUpperBoundH0(CVODES.CVodeMemRec, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
cvYddNorm(CVODES.CVodeMemRec, double, double[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
cw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
cwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
cwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
cwt(double[], double[], PyWavelets.ContinuousWavelet, double, String) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
cwt_psi_single(double[], PyWavelets.ContinuousWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
cx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CX_SPARSE - gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType
cXdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
cXres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
cy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cyan - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
cyan - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Define the cyan color.
cycleActivePt(int) - Method in class gov.nih.mipav.model.structures.VOIBase: Cycles through the active points on the curve.
cycleTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cycleTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cYdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
cyi - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
cylinderBody - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderBodyIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderBodyIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderBodyTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderDefault - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Cylinder shape part of the probe.
cylinderHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderHeadIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderHeadIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderHeadTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Indicator probe cylinder shape.
cylinderIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Indicator is used by the default probe to switch color between cyan and green.
cylinderIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Indicator probe cylinder shape.
cylinderIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Transformgroup of the indicator cylinder shape.
cylinderIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Transform group of the indicator cylinder shape.
cylinderIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Transformgroup of the indicator cylinder shape.
cylinderReconstruction - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
Cylinders - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
cylinderTail - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTailIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTailIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTailTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Transform group of the cylinder shape.
cylinderTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Cylinder geometry shape part of the CoolTip probe.
cylinderTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Cylinder geometry shape part of the regular probe.
cylinderTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTipIndicator - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTipIndicatorTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: The probe tip cylinder geometry shape.
cylinderTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: The probe tip cylinder geometry shape.
cylinderTipTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
cylinderX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: X cylinder of the red target sign.
cylinderXTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: X cylinder transform group that hold the X cylinder translation.
cylinderY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Y cylinder of the red target sign.
cylinderYTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Y cylinder transform group that hold the Y cylinder translation.
cylinderZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Z cylinder of the red target sign.
cylinderZTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Z cylinder transform group that hold the Z cylinder translation.
cyr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
cyr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
cyr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
cyr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
cyr - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
cyr - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
cYres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
CZ_LSMINFO - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czChannels - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czDataType - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czDataType2 - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
cZdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
czDimT - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czDimX - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czDimY - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czDimZ - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CZI - Static variable in class gov.nih.mipav.model.file.FileUtility: Zeiss ZISRAW (CZI) file format extension .czi
cZres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
czScanType - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
czSpectralScan - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CZT - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Int denoting CZT sequence

D

d - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
d - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLLE
d - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
d - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
d - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
d - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
d - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Arrays for internal storage of eigenvalues.
d - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
D - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
D - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverPerSolveOptions
D - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
D - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
D - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
D - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
D - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
D - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
D_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
D_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
D_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
D_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
d_alpha - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
d_beta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
d_beta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
d_cnjg(SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
D_COOL_WARM - gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
d_derived_tbl() - Constructor for class gov.nih.mipav.model.file.libjpeg.d_derived_tbl
D_DOT_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
d_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
d_imag(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
D_MAX_BLOCKS_IN_MCU - Static variable in class gov.nih.mipav.model.file.libjpeg
d_sign(double, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
D_VALUE_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
D0 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
d1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
D1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
d1km1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
d1km1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
d1Spline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
d1sqs - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: scalar containing the predicted reduction in the objective function if gn-direction is used.
d1sqs - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: scalar containing the predicted reduction in the objective function if gn-direction is used.
d2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
d2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
D2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
D2_DOT_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
d2DotProduct(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
d2DotTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
d2norm(double, double) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
d3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
d7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
DA - gov.nih.mipav.model.file.FileDicomTagInfo.VR
DA_x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Decoding area left boundary
DA_x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Decoding area left boundary
DA_x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Decoding area right boundary
DA_x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Decoding area right boundary
DA_y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Decoding area up boundary
DA_y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Decoding area up boundary
DA_y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Decoding area bottom boundary
DA_y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Decoding area bottom boundary
dabsquad(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DAC - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Arithmetic Coding conditioning segment identifier.
DAC - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DAC - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
DAgostinosKsquaredTest - Class in gov.nih.mipav.model.algorithms: This code calculates the Ksquared statistic of an input array x[].
DAgostinosKsquaredTest() - Constructor for class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest
DAgostinosKsquaredTest(double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest
dallocateA(int, int, double[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dAMinAlpha - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dAMinBlue - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dAMinGreen - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dAMinRed - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
damps - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: number of dampings used in the iteration.
Dan_Ventura_sdca_linear_example() - Method in class gov.nih.mipav.model.algorithms.SVM
Dan_Ventura_sdca_nonlinear_example() - Method in class gov.nih.mipav.model.algorithms.SVM
Dan_Ventura_sgd_linear_example() - Method in class gov.nih.mipav.model.algorithms.SVM
Dan_Ventura_sgd_nonlinear_example() - Method in class gov.nih.mipav.model.algorithms.SVM
DanwoodCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.DanwoodCostFunction
DanwoodData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
DanwoodObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
DARK - gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme
dark_on_bright - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
dark_on_bright - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
darkHalftone - Variable in class gov.nih.mipav.model.file.FileSVS
darkHalftone - Variable in class gov.nih.mipav.model.file.FileTiff
darkObjectButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
darkObjectOnWhiteBackground - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders
darkObjectOnWhiteBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
darkOnBrightCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
DArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
dashSpheres - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Spheres hold the probe detetion starting and ending point geometry shapes.
dasType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 68 DAS type.
dasum_(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
data - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: data array of this Img containing a value for each pixel in row major order
data - Variable in class gov.nih.mipav.model.algorithms.CVODES.NVector
data - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdnode
data - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
data - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache.head_t
data - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
data - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
data - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Regularizer multiplier.
data - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset
data - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: The byte type data buffer.
data - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Actual data array of the the VR.
data - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail
data - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: image component data
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
data - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
data - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
data - Variable in class gov.nih.mipav.model.GaussianKernel
data - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Data buffer that is used to store the image.
data - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Storage location of image data.
data - Variable in class gov.nih.mipav.model.structures.VOIStatisticalProperties: The hashtable of statistics.
data - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: DOCUMENT ME!
data - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
data - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
data - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
data - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_TristripAux
data - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
data - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache.head_t
data(String) - Static method in class gov.nih.mipav.view.Preferences: Prints to data tab
Data - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage
Data() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Data
Data(String, String, Boolean) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data: Creates a new Data object.
Data(Vector<String>, int, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Data
Data() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: return the segmentation results
DATA - Static variable in class gov.nih.mipav.view.ViewJFrameMessage: Used to indicate which of the 2 JTextAreas the data (message) is to be displayed.
data_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
data_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
DATA_BOOLEAN - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
DATA_BYTE - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
DATA_COMPLEX - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_current_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
DATA_DCOMPLEX - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
DATA_DIMENSION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
DATA_DIMENSION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CubicInterpolator
DATA_DIMENSION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
DATA_DIMENSION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
data_double - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
DATA_DOUBLE - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_file_directory - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
data_file_name - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
data_file_name - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
data_file_name - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
data_float - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
DATA_FLOAT - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_generation_example() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
data_int - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
DATA_INTEGER - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_length - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
DATA_LONG - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_max_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
data_peak1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
data_precision - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
DATA_PROVENANCE - Static variable in class gov.nih.mipav.model.file.FileDataProvenance: The MIPAV XML header comment.
DATA_PROVENANCE - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: mipav data provenance (*.xmp) files
DATA_PROVENANCE_SCHEMA - Static variable in class gov.nih.mipav.view.Preferences: The schema for the data provenance xml files
data_sets - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
DATA_SHORT - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
data_size_needed - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
data_stride - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
data_type - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
data_type - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use 10 chars.
data_type - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use 10 chars.
data_type - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DATA_UBYTE - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
DATA_UINTEGER - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
DATA_USHORT - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
dataArray - Variable in class gov.nih.mipav.model.structures.BufferBoolean: 1D Data array of boolean stored in the BitSet object.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferByte: 1D Data array of bytes.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferDouble: 1D Data array of doubles.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferFloat: 1D Data array of floats.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferInt: 1D Data array of integers.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferLong: 1D Data array of longs.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferShort: 1D Data array of shorts.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferUByte: 1D Data array of unsigned bytes (bytes).
dataArray - Variable in class gov.nih.mipav.model.structures.BufferUInt: 1D Data array of unsigned integers.
dataArray - Variable in class gov.nih.mipav.model.structures.BufferUShort: 1D Data array of unsigned shorts.
DataArrayAttributes - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
DataArrayStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
dataBar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
dataByteOffset - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
DATACHANNEL_ENTRY_ACQUIRE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_BITSPERSAMPLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_COLOR - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_DYE_FOLDER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_DYE_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CHANNEL1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CHANNEL2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST3 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST4 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST5 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_CONST6 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_TRACK1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_TRACK2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_RATIO_TYPE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_SAMPLETYPE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATACHANNEL_ENTRY_SPECTRUM - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DataChar() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
DataChar(double[], Vector<String>, int, int, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
dataCompression - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
dataConversion(FileInfoBase, FileInfoBase) - Method in class gov.nih.mipav.model.file.FileIO: Provides a method of conversion from FileInfoDicom to FileInfoImageXML, by filling the FileInfoImageXML with sets of chosen image information (from the DICOM tags).
dataDescription - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
DataDouble() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
DataDouble(double[], Vector<String>, int, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
dataEncode - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
dataEnd - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: Location in xSeries where Gaussian data ends
dataEnd - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Location in xSeries where Gaussian data ends
dataEnd - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Location in xSeries where Gaussian data ends
dataEndianess - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
dataExtents - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dataFile - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
dataFile - Variable in class gov.nih.mipav.model.file.FileSPM
dataFileName - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
dataFileName - Variable in class gov.nih.mipav.model.file.FileImageXML
dataFileName - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
dataFileName - Variable in class gov.nih.mipav.model.file.FileIO: For multi file formats where data is saved in a set of files
dataFileName - Variable in class gov.nih.mipav.model.file.FileRaw
dataFileName - Variable in class gov.nih.mipav.model.file.FileSPM
DataFileV2Keys() - Constructor for enum gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys
DataFloat() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
DataFloat(double[], Vector<String>, int, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
dataFramesSent - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
dataFromRaster(WritableRaster) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
dataindex - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
dataLine1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
dataLine2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
dataOffset - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
dataOffsets - Variable in class gov.nih.mipav.model.file.FileLSM
dataOffsets - Variable in class gov.nih.mipav.model.file.FileSTK
dataOffsets - Variable in class gov.nih.mipav.model.file.FileSVS
dataOffsets - Variable in class gov.nih.mipav.model.file.FileTiff
dataOrient - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dataOutput - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Flag indicating whether or not histogram data is output to the data window.
dataPrecision - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Data precision.
DataProvenanceParameters - Class in gov.nih.mipav.view.dialogs: This class standardizes the parameter names given to many common parameters used in algorithms.
DataProvenanceParameters() - Constructor for class gov.nih.mipav.view.dialogs.DataProvenanceParameters: Creates a new DataProvenanceParameters object to be used to record the current parameters entered into the algorithm's GUI by the user.
Dataset(String, Integer, Boolean) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset: Creates a new Dataset object.
datasetAttributesStr - Static variable in class gov.nih.mipav.model.file.FileImageXML: array of strings representing the tags under in the xml schema.
dataSetFileName - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
dataSetFileName - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
datasetID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
datasetKeywordsString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
datasetName - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
datasetNameString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
datasetOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogOrder: Load image using dataset-specific ordering
datasetRefs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
datasets - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME
dataSignature - Variable in class gov.nih.mipav.model.file.FileAvi: globals needed for write.
dataSinkUpdate(DataSinkEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Event handler for the file writer.
dataSinkUpdate(DataSinkEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: Event handler for the file writer.
dataSinkUpdate(DataSinkEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Event handler for the file writer.
datasize - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
dataSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
dataSize - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
dataSize - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Size of the data buffer (number of pixels in image).
dataSize - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Total buffer length.
dataSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Reference to the image data of the slice presently displayed.
dataSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Reference to the image data of the slice presently displayed.
DataSpaceValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
DataSparse() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
DataSparse(StochasticForests.SparseMatrix, Vector<String>, int, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
dataStart - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: Location in xSeries where Gaussian data starts
dataStart - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Location in xSeries where Gaussian data starts
dataStart - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Location in xSeries where Gaussian data starts
dataStartingBlock - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
DataStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
dataStruct - Class in gov.nih.mipav.model.algorithms
dataStruct() - Constructor for class gov.nih.mipav.model.algorithms.dataStruct
dataToString(DICOM_VR, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Build a string reprsentation of the Data based on the VR type.
datatype - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Stores the image data type DT_NONE = 0; DT_UNKNOWN = 0; DT_BINARY = 1; DT_UNSIGNED_CHAR = 2; DT_SIGNED_SHORT = 4; DT_UNSIGNED_SHORT = 4; DT_SIGNED_INT = 8; DT_FLOAT = 16; DT_COMPLEX = 32; DT_DOUBLE = 64; DT_RGB = 128; DT_ALL = 255;
datatype - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Stores the image data type DT_NONE = 0; DT_UNKNOWN = 0; DT_BINARY = 1; DT_UNSIGNED_CHAR = 2; DT_SIGNED_SHORT = 4; DT_UNSIGNED_SHORT = 4; DT_SIGNED_INT = 8; DT_FLOAT = 16; DT_COMPLEX = 32; DT_DOUBLE = 64; DT_RGB = 128; DT_ALL = 255;
datatype - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: data type
dataType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT
dataType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT
dataType - Variable in class gov.nih.mipav.model.file.FileBase: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.file.FileInfoBase: The data type of the data (i.e. byte, short, float ...
dataType - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogBlankImage: The ModelStorageBase.DataType of the blank image.
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT for color image
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: If blank image is to be loaded...need the type (for non-color images).
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT for color image
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
dataType - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
DataType(int, String, Number, Number) - Constructor for enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
dataTypeArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
DataTypeValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
DatDescriptor() - Constructor for class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
date - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: par/rec date
date - Variable in class gov.nih.mipav.model.file.XMLParameter: Parameter date.
DATE - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: Date/time data
date_created - Variable in class gov.nih.mipav.model.file.FileInfoJSON
DATE_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DATE_TIME - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
DATE_TIME - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
DATE_TIME - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
dateAcquired - Variable in class gov.nih.mipav.model.file.FileInfoFits
dateField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
dateOfBirth - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
dateProcessed - Variable in class gov.nih.mipav.model.file.FileInfoFits
dateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 14 allocation date time.
dateTime - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
dateTime - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
dateTime - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
dateTime - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
dateTimeDigitized - Variable in class gov.nih.mipav.model.file.FileSVS
dateTimeDigitized - Variable in class gov.nih.mipav.model.file.FileTiff
dateTimeOriginal - Variable in class gov.nih.mipav.model.file.FileSVS
dateTimeOriginal - Variable in class gov.nih.mipav.model.file.FileTiff
DateUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.DateUtil
dateWritten - Variable in class gov.nih.mipav.model.file.FileInfoFits
dati_peak2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
daub4(float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
DAUB4 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: underlying wavelet filter For 4 coefficients the routine daub4 is considerably faster than pwt.
DAUB4 - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: underlying wavelet filter For 4 coefficients the routine daub4 is considerably faster than pwt.
daubcqf() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools: Function computes the Daubechies' scaling and wavelet filters (normalized to sqrt(2)).
dawsn(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
DAWSN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
daxpy(int, double, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of 12/3/93 linpack routine daxpy Original version written by Jack Dongarra vector dy = vector dy + da * vector dx.
daxpy_(int, double, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
day - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
dayCombobox - Variable in class gov.nih.mipav.view.JPanelEditDate: DOCUMENT ME!
dazzleProtection - Variable in class gov.nih.mipav.model.file.FileInfoZVI
db - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: A DataBlk, just used to avoid allocating a new one each time it is needed
DB - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
db_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db_name - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Name of file with a length of 18 chars.
db_name - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Name of file with a length of 18 chars.
db_name - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
db0 - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
db1 - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
db1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db10_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db11_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db12_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db13_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db14_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db15_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db16_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db17_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db18_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db19_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db2 - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
db2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db20_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db21_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db22_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db23_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db24_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db25_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db26_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db27_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db28_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db29_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db30_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db31_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db32_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db33_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db34_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db35_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db36_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db37_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db38_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
db9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dbAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
dBaseFunction - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
DBDSDC(char, char, int, double[], double[], double[][], int, double[][], int, double[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
dbdsqr(char, int, int, int, int, double[], double[], double[][], int, double[][], int, double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DBDSQR. -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- January 2007 ..
dbdt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 838 peak rate of change in gradient field, tesla/sec.
dBdt - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dbdt01(int, int, int, double[][], int, double[][], int, double[], double[], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DBDT01.
dbdt02(int, int, double[][], int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DBDT02.
dbdt03(char, int, int, double[], double[], double[][], int, double[], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DBDT03.
dbdtPer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 842 limit in units of percent of theoretical curve.
DBEG(boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dbglvl - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
DBL_EPSILON - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
DBL_EPSILON - Variable in class gov.nih.mipav.model.algorithms.CVODES
DBL_EPSILON - Variable in class gov.nih.mipav.model.algorithms.Lmmin
DBL_EPSILON - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
DBL_EPSILON - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
DBL_EPSILON - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper: Project: Generic Polygon Clipper A new algorithm for calculating the difference, intersection, exclusive-or or union of arbitrary polygon sets.
DBL_MAX - Variable in class gov.nih.mipav.model.algorithms.Lmmin
DBL_MIN - Variable in class gov.nih.mipav.model.algorithms.Lmmin: 2**-1022 = D1MACH(1).
dblat2() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dblat3() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dblSort3(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Poly
dBMinAlpha - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dBMinBlue - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dBMinGreen - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
dBMinRed - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
DBSCANClusteringSegment - Class in gov.nih.mipav.model.algorithms: % Copyright (c) 2013 Peter Kovesi % www.peterkovesi.com/matlabfns/ % % Permission is hereby granted, free of charge, to any person obtaining a copy % of this software and associated documentation files (the "Software"), to deal % in the Software without restriction, subject to the following conditions: % % The above copyright notice and this permission notice shall be included in % all copies or substantial portions of the Software. % % The Software is provided "as is", without warranty of any kind.
DBSCANClusteringSegment(ModelImage, ModelImage, int, double, double, int, int, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
DBSCANClusteringSegment.AmAl - Class in gov.nih.mipav.model.algorithms
DBSCANClusteringSegment.Renum - Class in gov.nih.mipav.model.algorithms
DBSCANClusteringSegment.SP - Class in gov.nih.mipav.model.algorithms
dc - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
dc - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
DC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
dc_context - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
dc_cur_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
dc_derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
dc_huff_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
DC_OFFSET - Static variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: DC offset value used when reading image
DC_OFFSET - Static variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: DC offset value used when reading image
DC_STAT_BINS - Static variable in class gov.nih.mipav.model.file.libjpeg
dc_stats - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
dc_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
dca_updateFunction(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM
dcalc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Starts the Gaussian calculation.
dcAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
dcaUpdateFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
dcheck_tempv(int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK1(String, double, double, boolean, boolean, boolean[], int, int[], int, double[], int, double[], int, double[][], double[], double[], double[][], double[], double[], double[][], double[], double[], double[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK1(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, double[], int, double[], int, int[], int, int, double[][], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK2(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, double[], int, double[], int, int[], int, int, double[][], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK3(String, double, double, boolean, boolean, boolean[], int, int[], int, double[], int, double[][], double[], double[], double[][], double[], double[], double[], double[], double[][], int[], boolean[], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK3(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, int[], int, int, double[][], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK4(String, double, double, int, boolean, boolean, boolean[], int, int[], int, double[], int, int[], int, int, double[][], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHK6(String, double, double, int, boolean, boolean, boolean[], int, int[], int, double[], int, int[], int, int, double[][], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dchkaa() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
dchkaa() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dchkbd(int, int[], int[], int, boolean[], int, int[], double, double[][], int, double[], double[], double[], double[], double[][], int, double[][], double[][], double[][], int, double[][], int, double[][], double[][], double[], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of most of version 3.1 LAPACK test routine DCHKBD.
dchkbd_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive dchkbd in order to run dchkbd to test the singular value decomposition routines, dgebrd, dorgbr, and dbdsqr.
DCHKE(int, String, int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCHKEQ() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dchkge(boolean[], int, int[], int, int[], int, int[], int, int[], double, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dchkgg(int, int[], int, boolean[], int[], double, boolean, double, double[][], int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], int, double[][], double[][], double[][], double[], double[], double[], double[], double[], double[], double[][], double[][], double[], int, boolean[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DCHKGG Original DCHKGG created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dchkgg checks the nonsymmetric generalized eigenvalue problem routines.
dchkgg_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive dchkgg in order to run dchkgg to test the nonsymmetric generalized eigenvalue problem.
dchkgk() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DCHKGK Original DCHKGK created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 Sample data values obtained from the file dgbak.in dchkgk tests dggbak, a routine for backward balancing of a matrix pair (A, B).
dchkgl() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DCHKGL Original DCHKGL created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 Sample data values obtained from the file dgbal.in
dchkgt(boolean[], int, int[], int, int[], double, double[], double[], double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dchkgt_test() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue: This dchkgt_test routine is a port of a portion of the version 3.4.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
dchklq(boolean[], int, int[], int, int[], int, int[], int[], int, double, boolean, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DCHKLQ.
dchklq_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This dchklq_test routine is a port of a portion of the version 3.1.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
dchkpo(boolean[], int, int[], int, int[], int, int[], double, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
dchkq3(boolean[], int, int[], int, int[], int, int[], int[], double, double[][], double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dchkq3_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2: This dchkqr_test routine is a port of a portion of the version 3.1.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
dchkql(boolean[], int, int[], int, int[], int, int[], int[], int, double, boolean, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dchkql_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This dchkql_test routine is a port of a portion of the version 3.1.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
dchkqr(boolean[], int, int[], int, int[], int, int[], int[], int, double, boolean, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DCHKQR Univ. of Tennessee, Univ. of California Berkeley and NAG Ltd..
dchkqr_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This dchkqr_test routine is a port of a portion of the version 3.1.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
dchkst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the porions of LAPACK version 3.1 test routine DCHKST used to test the symmetric eigenvalue routines dsytrd, dorgtr, dsteqr, dsterf, and dsteqr.
dchkst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of the portions of LAPACK version 3.4.0 test routine DCHKST used to test the symmetric eigenvalue routines dstebz and dstein.
dchkst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of the portions of LAPACK version 3.4.0 test routine DCHKST used to test the symmetric eigenvalue routine dstemr.
dchkst_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive dchkst, that tests routines used in symmetric generalized eigenvalue problem.
dchkst_test() - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive dchkst, that tests routines used in symmetric generalized eigenvalue problem.
dchkst_test() - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive dchkst, that tests routines used in symmetric generalized eigenvalue problem.
dcins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
dcins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
dcLength - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
dcm2q(double[][][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
dcmmeta_affine - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dcmmeta_reorient_transform - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dcmmeta_shape - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dcmmeta_slice_dim - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dcmmeta_version - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dcnDensity - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 74 Decon kernel density.
dcnLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 72 Number of elements in Decon kernel.
dcnShiftCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 78 Decon kernel shift count.
dcnStepSize - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 76 Decon kernel stepsize.
dcolumn_bmod(int, int, double[], double[], int[], int[], int, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dcolumn_dfs(int, int, int[], int[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DCOMPLEX - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type complex type of doubles (2 x 128 bits per voxel).
DCOMPLEX - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of complex type of doubles (2 x 128 bits per voxel).
DCOMPLEX_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type complex (double).
dCompRow_to_CompCol(int, int, int, double[], int[], int[], double[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dcopy(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.LSQR
DCOPY(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SVD
dcopy_(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCopy_CompCol_Matrix(SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCopy_Dense_Matrix(int, int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dcopy_to_ucol(int, int, int[], int[], int[], double[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCreate_CompCol_Matrix(SuperLU.SuperMatrix, int, int, int, double[], int[], int[], SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCreate_CompRow_Matrix(SuperLU.SuperMatrix, int, int, int, double[], int[], int[], SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCreate_Dense_Matrix(SuperLU.SuperMatrix, int, int, double[], int, SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dCreate_SuperNode_Matrix(SuperLU.SuperMatrix, int, int, int, double[], int[], int[], int[], int[], int[], SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dcrmPassed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
dcrsm - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
dcscAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
dcsrch(double[], double[], double[], double, double, double, double, double, String[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
dcstep(double[], double[], double[], double[], double[], double[], double[], double, double, boolean[], double, double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
DCT_h_scaled_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
dct_method - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
dct_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
DCT_v_scaled_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
DCTBlockSize - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DCTBlockSize - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
DCTSize - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DCTSize - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
DCTSIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
DCTSIZE2 - Static variable in class gov.nih.mipav.model.file.libjpeg
dd - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream.StackElem
dd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
DD_AccessionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionContextDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionContextSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionDeviceProcessingCode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionDeviceProcessingDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionMatrix - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionsInStudy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionStartCondition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionStartConditionData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionTerminationCondition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionTerminationConditionData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AcquisitionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ActionTypeID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ActiveSourceDiameter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ActiveSourceLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ActualFrameDuration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ActualHumanPerformersSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdditionalDrugSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdditionalPatientHistory - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdministrationRouteCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdmissionID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdmittingDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdmittingDiagnosesCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdmittingDiagnosesDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AdmittingTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AffectedSOPClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AffectedSOPInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AirKermaRateReferenceDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AirKermaRateReferenceTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnatomicRegionModifierSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnatomicRegionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnatomicStructureSpaceOrRegionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AngioFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AngularPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AngularStep - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AngularViewVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnnotationContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnnotationDisplayFormatID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnnotationFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnnotationGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnnotationPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AnodeTargetMaterial - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicableFrameRange - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupCheck - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupManufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicationSetupType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicatorDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicatorID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicatorSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApplicatorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ApprovalStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AttachedContours - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AttenuationCorrectionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AttributeIdentifierList - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AudioComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AudioSampleData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AudioSampleFormat - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AudioType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AveragePulseWidth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AxialAcceptance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AxialMash - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AxisLabels - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_AxisUnits - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BasicColorImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BasicGrayscaleImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamDoseSpecificationPoint - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceAngleTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceLeafPairsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDevicePositionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDevicePositionTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceRotationDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamLimitingDeviceToleranceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamStopperPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeamType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BeatRejectionFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BillingItemSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BillingProcedureStepSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BillingSuppliesAndDevicesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BiplaneAcquisitionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BitsAllocated - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BitsStored - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockDivergence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockNumberOfPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockTransmission - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockTrayID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BlockType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BluePaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BluePaletteColorLookupTableDescriptor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BodyPartExamined - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BodyPartThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BoneThermalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BorderDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceNominalThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceNominalTransmission - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyAccessoryDeviceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyApplicationSetupDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyApplicationSetupDoseSpecificationPoint - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyControlPointDeliveredSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyControlPointSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyReferencedDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyTreatmentTechnique - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BrachyTreatmentType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BranchOfService - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_BurnedInAnnotation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalculatedDoseReferenceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalculatedDoseReferenceDoseValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalculatedDoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalculatedDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalibrationDataSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalibrationGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CalibrationImage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CardiacNumberOfImages - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CassetteOrientation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CassetteSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CenterOfCircularCollimator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CenterOfCircularShutter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CenterOfRotationOffset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CertificateOfSigner - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CertificateType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CertifiedTimestamp - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CertifiedTimestampType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldNominalThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldNominalTransmission - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelShieldSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ChannelTotalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CineRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CodeMeaning - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CodeValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CodingSchemeDesignator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CoincidenceWindowWidth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollationFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorGridName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorLeftVerticalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorLowerHorizontalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorRightVerticalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorShape - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CollimatorUpperHorizontalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ColorImagePrintingFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ColumnAngulation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Columns - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CommandField - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CommentsOnPerformedProcedureStep - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CommentsOnRadiationDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CommentsOnScheduledProcedureStep - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorColumns - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorPixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorRows - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorThicknessData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorTransmissionData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompensatorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CompressionForce - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConceptCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConceptNameCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConfidentialityCode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConfidentialityConstraintOnPatientDataDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConfigurationInformation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConfigurationInformationDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConstraintWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContentDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContentTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourGeometricType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourOffsetVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContourSlabThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastAllergies - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusAdministrationRouteSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusAgent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusAgentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusIngredient - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusIngredientConcentration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusRoute - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusStopTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusTotalDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastBolusVolume - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastFlowDuration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastFlowRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ContrastFrameAveraging - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ControlPoint3DPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ControlPointDeliverySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ControlPointIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ControlPointRelativePosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ControlPointSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConversionType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ConvolutionKernel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CoordinateStartValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CoordinateStepValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CorrectedImage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CountRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CountryOfResidence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CountsAccumulated - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CountsIncluded - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CountsSource - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CranialThermalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CreationDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CreationTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CumulativeDoseReferenceCoefficient - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CumulativeDoseToDoseReference - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CumulativeMetersetWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CumulativeTimeWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurrentFractionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurrentPatientLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurrentTreatmentStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveDataDescriptor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveDimensions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveRange - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveReferencedOverlayGroup - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveReferencedOverlaySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_CurveTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataCollectionDiameter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataElementsSigned - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataSetTrailingPadding - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataSetType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DataValueRepresentation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Date - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DateOfLastCalibration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DateOfLastDetectorCalibration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DateOfSecondaryCapture - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_dBdt - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeadTimeCorrectionFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeadTimeFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DecayCorrection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DecayFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DecimateCropResult - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DefaultMagnificationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DefaultPrinterResolutionID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DefaultSmoothingType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredChannelTotalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredNumberOfPulses - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredPrimaryMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredPulseRepetitionInterval - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredSecondaryMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveredTreatmentTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveryMaximumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeliveryWarningDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DepthOfScanField - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DerivationDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DestinationAE - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorActivationOffsetFromExposure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorActiveDimensions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorActiveOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorActiveShape - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorActiveTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorBinning - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorConditionsNominalFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorConfiguration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorElementPhysicalSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorElementSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorElementSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorLinesOfResponseUsed - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorMode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorPrimaryAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorSecondaryAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorTemperature - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorTimeSinceLastExposure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DetectorVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceDiameter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceDiameterUnits - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceSerialNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DeviceVolume - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DiaphragmPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DigitalImageFormatAcquired - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DigitalSignatureDateTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DigitalSignaturesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DigitalSignatureUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DigitizingDeviceTransportDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DirectoryRecordSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DirectoryRecordType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DischargeDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DischargeDiagnosisCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DischargeDiagnosisDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DischargeTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DisplayWindowLabelVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistanceSourceToDetector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistanceSourceToEntrance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistanceSourceToPatient - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistanceSourceToSupport - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistributionAddress - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DistributionName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DopplerCorrectionAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DopplerSampleVolumeXPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DopplerSampleVolumeYPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseCalibrationFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseComment - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseGridScaling - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseRateDelivered - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseRateSet - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferenceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferencePointCoordinates - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferenceStructureType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseReferenceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseSummationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseUnits - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DoseValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHDoseScaling - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHMaximumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHMeanDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHMinimumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHNormalizationDoseValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHNormalizationPoint - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHNumberOfBins - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHReferencedROISequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHROIContributionType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_DVHVolumeUnits - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EchoNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EchoTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EchoTrainLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EffectiveSeriesDuration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EmptyImageDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EndCumulativeMetersetWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EndMessageSet - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EndMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowLowerLimit - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowRangeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowUpperLimit - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EnergyWindowVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EntranceDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EntranceDoseInmGy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ErrorComment - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ErrorID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EstimatedRadiographicMagnificationFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EthnicGroup - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EventElapsedTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EventTimerName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_EventTypeID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExecutionStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExecutionStatusInfo - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExpectedCompletionDateAndTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposedArea - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Exposure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureControlMode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureControlModeDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureDoseSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureInuAs - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposuresOnDetectorSinceLastCalibration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposuresOnDetectorSinceManufactured - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposuresOnPlate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ExposureTimeInuS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FailedSOPInstanceUIDList - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FailedSOPSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FailureReason - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FieldOfViewDimensions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FieldOfViewHorizontalFlip - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FieldOfViewOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FieldOfViewRotation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FieldOfViewShape - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileMetaInformationGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileMetaInformationVersion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileSetCharacterSet - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileSetConsistencyFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileSetDescriptorFileID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileSetGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FileSetID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FillerOrderNumberOfImagingServiceRequest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmBoxContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmBoxGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmConsumptionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmDestination - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmOrientation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmSessionGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmSessionLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilmSizeID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilterMaterial - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilterThicknessMaximum - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilterThicknessMinimum - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FilterType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FinalCumulativeMetersetWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FinalCumulativeTimeWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FirstTreatmentDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FixationDeviceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FixationDeviceLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FixationDevicePosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FixationDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FixationDeviceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FlipAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FocalDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FocalSpot - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FocusDepth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionGroupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionGroupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionGroupSummarySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionGroupType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionPattern - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FractionStatusSummarySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameDelay - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameIncrementPointer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameLabelVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameNumbersOfInterest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfInterestDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfReferenceRelationshipSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfReferenceTransformationComment - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfReferenceTransformationMatrix - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfReferenceTransformationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameOfReferenceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FramePrimaryAngleVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameReferenceTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameSecondaryAngleVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FrameTimeVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_FramingType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GantryAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GantryAngleTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GantryDetectorSlew - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GantryDetectorTilt - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GantryRotationDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GatedInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GeneralPurposePerformedProcedureStepStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GeneralPurposeScheduledProcedureStepPriority - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GeneralPurposeScheduledProcedureStepStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GeneratorPower - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GreenPaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GreenPaletteColorLookupTableDescriptor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Grid - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridAbsorbingMaterial - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridAspectRatio - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridFocalDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridFrameOffsetVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridPeriod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridPitch - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridSpacingMaterial - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GridThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_GroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HalfValueLayer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HardcopyCreationDeviceID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HardcopyDeviceManufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HardcopyDeviceManufacturerModelName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HardcopyDeviceSoftwareVersion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HeartRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HighBit - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HighDoseTechniqueType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HighRRValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramBinWidth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramExplanation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramFirstBinValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramLastBinValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramNumberOfBins - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HistogramSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HumanPerformerCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HumanPerformersName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_HumanPerformersOrganization - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IconImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IdentifyingGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Illumination - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageAreaDoseProduct - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageBoxContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageBoxGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageBoxPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageBoxPresentationLUTFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageDisplayFormat - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagedNucleus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageFrameOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageLaterality - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageOrientationPatient - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageOverlayBoxContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageOverlayFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagePlanePixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagePositionPatient - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagePresentationGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagerPixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagesInAcquisition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageTransformationMatrix - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageTranslationVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImageType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagingDeviceSpecificAcquisitionParameters - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagingFrequency - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImagingServiceRequestComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImplantPresent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImplementationClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ImplementationVersionName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Impressions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InPlanePhaseEncodingDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InputAvailabilityFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InputInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstanceAvailability - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstanceCreationDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstanceCreationTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstanceCreatorUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstanceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstitutionAddress - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstitutionalDepartmentName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstitutionCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InstitutionName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IntensifierSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterMarkerDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationApprovalDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationApprovalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationApproverSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationAuthor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationDiagnosisCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationDiagnosisDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationIDIssuer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationRecordedDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationRecordedTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationRecorder - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationStatusID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationText - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationTranscriber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationTranscriptionDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationTranscriptionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterpretationTypeID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IntervalsAcquired - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IntervalsRejected - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionDrugStopTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InterventionTherapySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_InversionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IsocenterPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IssueDateOfImagingServiceRequest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IssuerOfAdmissionID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IssuerOfPatientID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IssueTimeOfImagingServiceRequest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Item - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ItemDelimitationItem - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ItemNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IVUSAcquisition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IVUSGatedRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IVUSPullbackRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IVUSPullbackStartFrameNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_IVUSPullbackStopFrameNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_KVP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LargestImagePixelValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LargestPixelValueInPlane - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LargestPixelValueInSeries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LastMenstrualDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LASTSEARCHED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Laterality - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LeafJawPositions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LeafPositionBoundaries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LesionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LossyImageCompression - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LossyImageCompressionRatio - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LowerLevelDirectoryOffset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LowRRValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LUTData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LUTDescriptor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LUTExplanation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_LUTNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MACAlgorithm - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MACCalculationTransferSyntaxUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MACIDNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MACParametersSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MagneticFieldStrength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MagnificationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MagnifyToNumberOfColumns - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Manufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ManufacturerModelName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskFrameNumbers - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskOperation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskOperationExplanation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskPointer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskSubPixelShift - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaskSubtractionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaterialID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaxDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaximumCollatedFilms - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaximumCoordinateValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MaximumMemoryAllocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuredDoseDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuredDoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuredDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuredDoseType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuredDoseValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasurementUnitsCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MeasuringUnitsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MechanicalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MediaInstalledSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MediaStorageSOPClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MediaStorageSOPInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MedicalAlerts - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MedicalRecordLocator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MediumType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MemoryAllocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MemoryBitDepth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MessageID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MessageIDBeingRespondedTo - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MessageSetID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MetersetExposure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MilitaryRank - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MinDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MinimumCoordinateValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ModalitiesInStudy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Modality - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ModalityLUTSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ModalityLUTType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MostRecentTreatmentDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MoveDestination - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MoveOriginatorApplicationEntityTitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MoveOriginatorMessageID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MRAcquisitionType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MRDRDirectoryRecordOffset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_MultipleCopiesFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NamesOfIntendedRecipientsOfResults - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NextDirectoryRecordOffset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NominalBeamEnergy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NominalBeamEnergyUnit - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NominalInterval - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NominalPriorDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NominalScannedPixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NonDICOMOutputCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NormalizationPoint - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NuclearAcquisitionGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfAverages - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfBeams - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfBlocks - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfBoli - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfBrachyApplicationSetups - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfChannels - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfCompensators - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfCompletedSuboperations - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfContourPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfControlPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfCopies - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfDetectors - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfEnergyWindows - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfEventTimers - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFailedSuboperations - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFilms - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFractionPatternDigitsPerDay - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFractionsDelivered - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFractionsPlanned - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFrames - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFramesInOverlay - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFramesInPhase - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfFramesInRotation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfLeafJawPairs - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPatientRelatedInstances - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPatientRelatedSeries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPatientRelatedStudies - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPhaseEncodingSteps - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPhases - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfPulses - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfReferences - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfRemainingSuboperations - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfRotations - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfRRIntervals - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfSamples - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfSeriesRelatedInstances - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfSlices - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfStages - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfStudyRelatedInstances - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfStudyRelatedSeries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTableBreakPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTableEntries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTemporalPositions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTimeSlices - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTimeSlots - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTomosynthesisSourceImages - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfTriggersInPhase - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfViewsInStage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfWarningSuboperations - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumberOfWedges - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_NumericValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ObservationNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Occupation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OffendingElement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OperatorName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrderCallbackPhoneNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrderEnteredBy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrderEntererLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganAtRiskFullVolumeDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganAtRiskLimitDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganAtRiskMaximumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganAtRiskOverdoseVolumeFraction - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OrganExposed - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OriginalImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Originator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherMagnificationTypesAvailable - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherMediaAvailableSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherPatientID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherPatientName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherSmoothingTypesAvailable - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OtherStudyNumbers - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OutputInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OutputPower - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayBackgroundDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayBitPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayBitsAllocated - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayBlue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayBoxGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayColumns - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDescriptorBlue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDescriptorGray - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDescriptorGreen - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayDescriptorRed - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayForegroundDensity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayGray - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayGreen - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayMagnificationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayOrImageMagnification - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayPixelDataSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayPlanes - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayRed - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayRows - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlaySmoothingType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlaySubtype - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverlayType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverrideParameterPointer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverrideReason - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OverrideSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_OwnerID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PageNumberVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PaletteColorLookupTableUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PartialView - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PartialViewDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientAdditionalPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientAddress - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientAge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientBirthDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientBirthName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientBirthTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientGantryRelationshipCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientInstitutionResidence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientInsurancePlanCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientMotherBirthName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientOrientation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientOrientationCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientOrientationModifierCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientPrimaryLanguageCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientPrimaryLanguageModifierCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientReligiousPreference - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSetupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSetupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientState - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSupportAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSupportAngleTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientSupportRotationDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientTelephoneNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientTransportArrangements - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PatientWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PauseBetweenFrames - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PercentPhaseFieldOfView - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PercentSampling - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepDiscontinuationReasonCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepEndDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepEndTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepStartDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureStepStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcedureTypeDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProcessingApplicationsCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedProtocolCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedSeriesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedStationAETitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedStationClassCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedStationGeographicLocationCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedStationName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedStationNameCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformedWorkitemCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PerformingPhysicianName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PersonName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhaseDelay - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhaseInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhaseVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhosphorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhotometricInterpretation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhototimerSetting - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicalDeltaX - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicalDeltaY - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicalUnitsXDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicalUnitsYDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicianApprovingInterpretation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicianOfRecord - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PhysicianReadingStudy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelAspectRatio - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelBandwidth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentDataType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentMask - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentOrganization - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentPhysicalUnits - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentRangeStart - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelComponentRangeStop - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelDataGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelIntensityRelationship - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelIntensityRelationshipSign - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelPaddingValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelRepresentation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlacerOrderNumberOfImagingServiceRequest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlanarConfiguration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlaneOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Planes - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlannedVerificationImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlateID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PlateType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Polarity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerMotion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerPrimaryAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerPrimaryAngleIncrement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerSecondaryAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerSecondaryAngleIncrement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionerType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PositionReferenceIndicator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PostprocessingFunction - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PreferredPlaybackSequencing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PregnancyStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PreMedication - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrescriptionDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PresentationIntentType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PresentationLUTContentSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PresentationLUTFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PresentationLUTSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PresentationLUTShape - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrimaryAnatomicStructureModifierSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrimaryAnatomicStructureSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrimaryDosimeterUnit - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrimaryPromptsCountsAccumulated - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterCharacteristicsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterConfigurationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterPixelSpacing - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterResolutionID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrinterStatusInfo - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintingBitDepth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintJobDescriptionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintJobGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintJobID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintManagementCapabilitiesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintPriority - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrintQueueID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Priority - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrivateInformation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrivateInformationCreatorUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PrivateRecordUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ProcedureCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ProcessingFunction - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ProjectionEponymousNameCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ProposedStudySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ProtocolName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PulseRepetitionFrequency - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PulseRepetitionInterval - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PurposeOfReferenceCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_PVCRejection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_QualityControlImage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Quantity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_QuantitySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_QueryRetrieveLevel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_QueueStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadialPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationMachineName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationMachineSAD - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationMachineSSD - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationMode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationSetting - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadionuclideCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadionuclideHalfLife - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadionuclidePositronFraction - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadionuclideTotalDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Radiopharmaceutical - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalRoute - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalSpecificActivity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalStopTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiopharmaceuticalVolume - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiusOfCircularCollimator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RadiusOfCircularShutter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RandomsCorrectionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReasonForImagingServiceRequest - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReasonForRequestedProcedure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReasonForStudy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReceiveCoilName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecommendedDisplayFrameRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecommendedViewingMode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReconstructionDiameter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReconstructionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedBlockSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedBrachyAccessoryDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedChannelSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedChannelShieldSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedCompensatorSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedSourceApplicatorSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedSourceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordedWedgeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RecordInUseFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RectificationType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RedPaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RedPaletteColorLookupTableDescriptor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferenceAirKermaRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBasicAnnotationBoxSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBeamNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBeamSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBlockNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBolusSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBrachyAccessoryDeviceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBrachyApplicationSetupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedBrachyApplicationSetupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedCalculatedDoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedCalculatedDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedChannelShieldNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedCompensatorNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedControlPointIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedCurveSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedDoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedDoseSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFileID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFilmBoxSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFilmSessionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFractionGroupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFractionGroupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFractionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFrameNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFrameNumbers - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFrameOfReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedFrameOfReferenceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedGeneralPurposeScheduledProcedureStepSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedGeneralPurposeScheduledProcedureStepTransactionUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedImageBoxSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedInterpretationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedMeasuredDoseReferenceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedMeasuredDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedNonImageCompositeSOPInstanceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedOverlayPlaneGroups - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedOverlayPlaneSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedOverlaySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPatientAliasSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPatientSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPatientSetupNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPerformedProcedureStepSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPresentationLUTSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPrintJobSequencePull - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedPrintJobSequenceQueue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedProcedureStepSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedReferenceImageNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedReferenceImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedResultsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedROINumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedRTPlanSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSeriesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSOPClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSOPClassUIDInFile - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSOPInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSOPInstanceUIDInFile - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSOPSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSourceApplicatorNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedSourceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedStoredPrintSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedStructureSetSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedStudySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedToleranceTableNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedTransferSyntaxUIDInFile - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedTreatmentRecordSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedVerificationImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedVisitSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencedWedgeNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferenceImageNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencePixelPhysicalValueX - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencePixelPhysicalValueY - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencePixelX0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferencePixelY0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferenceToRecordedSound - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferringPhysicianAddress - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferringPhysicianName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReferringPhysicianTelephoneNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReflectedAmbientLight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionDataType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionFlags - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionLocationMaxX1 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionLocationMaxY1 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionLocationMinX0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionLocationMinY0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionOfResidence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RegionSpatialFormat - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RelatedFrameOfReferenceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RelatedRTROIObservationsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RelationshipGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RelativeXrayExposure - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RelevantInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RepeatFractionCycleLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RepetitionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReportedValuesOrigin - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReportingPriority - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RepresentativeFrameNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReprojectionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestAttributesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedContrastAgent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedDecimateCropBehavior - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedImageSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedImageSizeFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedureCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedureComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedureDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedureID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedureLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedProcedurePriority - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedResolutionID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedSOPClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedSOPInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestedSubsequentWorkitemCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestingPhysician - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RequestingService - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RescaleIntercept - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RescaleSlope - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RescaleType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResidualSyringeCounts - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultingGeneralPurposePerformedProcedureStepsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultsComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultsDistributionListSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultsGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultsID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ResultsIDIssuer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RetrieveAETitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReviewDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReviewerName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ReviewTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIArea - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIContourSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIDisplayColor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIGenerationAlgorithm - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIGenerationDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIInterpreter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIMean - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROINumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIObservationDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIObservationLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIPhysicalPropertiesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIPhysicalProperty - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIPhysicalPropertyValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIStandardDeviation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ROIVolume - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RootDirectoryFirstRecord - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RootDirectoryLastRecord - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RotationDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RotationInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RotationOfScannedFilm - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RotationVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RouteOfAdmissions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Rows - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RRIntervalVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTBeamLimitingDeviceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTDoseROISequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImageDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImageLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImageName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImageOrientation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImagePlane - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImagePosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTImageSID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanGeometry - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanRelationship - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTPlanTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTReferencedSeriesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTReferencedStudySequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTRelatedROISequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTROIIdentificationCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTROIInterpretedType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTROIObservationsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RTROIRelationship - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_RWavePointer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SafePositionExitDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SafePositionExitTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SafePositionReturnDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SafePositionReturnTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SampleRate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SamplesPerPixel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SAR - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScanArc - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScanLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScanningSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScanOptions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScanVelocity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScatterCorrectionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScatterFractionFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledAdmissionDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledAdmissionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledDischargeDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledDischargeTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledHumanPerformersSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledPatientInstitutionResidence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledPerformingPhysicianName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepEndDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepEndTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepStartDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepStartDateAndTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcedureStepStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProcessingApplicationsCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledProtocolCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStationAETitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStationClassCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStationGeographicLocationCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStationName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStationNameCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStepAttributesSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyLocationAETitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyStartDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyStartTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyStopDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledStudyStopTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ScheduledWorkitemCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCaptureDeviceID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCaptureDeviceManufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCaptureDeviceManufacturerModelName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCaptureDeviceSoftwareVersion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCountsAccumulated - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SecondaryCountsType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SegmentedBluePaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SegmentedGreenPaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SegmentedRedPaletteColorLookupTableData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Sensitivity - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SequenceDelimitationItem - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SequenceName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SequenceOfUltrasoundRegions - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SequenceVariant - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesInStudy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SeriesType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupDeviceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupDeviceLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupDeviceParameter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupDeviceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupReferenceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupTechnique - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SetupTechniqueDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShieldingDeviceDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShieldingDeviceLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShieldingDevicePosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShieldingDeviceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShieldingDeviceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShutterLeftVerticalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShutterLowerHorizontalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShutterRightVerticalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShutterShape - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ShutterUpperHorizontalEdge - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Signature - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SkipBeats - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SliceLocation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SliceLocationVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SliceSensitivityFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SliceThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SliceVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SlideIdentifier - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SmallestImagePixelValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SmallestPixelValueInPlane - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SmallestPixelValueInSeries - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SmokingStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SmoothingType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SoftTissueFocusThermalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SoftTissueSurfaceThermalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SoftTissueThermalIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SoftwareVersion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SOPClassesSupported - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SOPClassUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SOPInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicationEntityTitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorManufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorStepSize - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorWallNominalThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceApplicatorWallNominalTransmission - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceAxisDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceEncapsulationNominalThickness - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceEncapsulationNominalTransmission - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceImageSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceIsotopeHalfLife - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceIsotopeName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceManufacturer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceMovementType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceSerialNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToBeamLimitingDeviceDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToBlockTrayDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToCompensatorTrayDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToReferenceObjectDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToSurfaceDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceToWedgeTrayDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SourceType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpacingBetweenSlices - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpatialResolution - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecialNeeds - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecificCharacterSet - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedChannelTotalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedNumberOfPulses - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedPrimaryMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedPulseRepetitionInterval - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedSecondaryMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecifiedTreatmentTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecimenAccessionNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecimenIdentifier - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecimenSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SpecimenTypeCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StageCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StageName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StageNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StartAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StartCumulativeMetersetWeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StartMeterset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StartTrim - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StationName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Status - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SteeringAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StopTrim - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StorageGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StorageMediaFileSetID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StorageMediaFileSetUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetROISequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StructureSetTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyArrivalDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyArrivalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyCompletionDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyCompletionTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyComponentStatusID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyIDIssuer - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyInstanceUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyPriorityID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyReadDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyReadTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyStatusID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyVerifiedDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_StudyVerifiedTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SupportedImageDisplayFormatsSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SurfaceEntryPoint - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SynchronizationFrameOfReference - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_SyringeCounts - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableHeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableLateralIncrement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableLongitudinalIncrement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableMotion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableOfParameterValues - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableOfPixelValues - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableOfXBreakPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableOfYBreakPoints - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopEccentricAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopEccentricAngleTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopEccentricAxisDistance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopEccentricRotationDirection - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLateralPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLateralPositionTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLateralSetupDisplacement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLongitudinalPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLongitudinalPositionTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopLongitudinalSetupDisplacement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopVerticalPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopVerticalPositionTolerance - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTopVerticalSetupDisplacement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableTraverse - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TableVerticalIncrement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TargetMaximumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TargetMinimumDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TargetPrescriptionDose - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TargetUnderdoseVolumeFraction - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TemplateName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TemplateNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TemplateType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TemporalPositionIdentifier - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TemporalResolution - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TextString - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TextValue - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TherapyDescription - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TherapyType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TIDOffset - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Time - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeOfLastCalibration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeOfLastDetectorCalibration - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeOfSecondaryCapture - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeSliceVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeSlotInformationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeSlotTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimeSlotVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TimezoneOffsetFromUTC - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TMLinePositionX0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TMLinePositionX1 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TMLinePositionY0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TMLinePositionY1 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ToleranceTableLabel - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ToleranceTableNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ToleranceTableSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TomoAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TomoClass - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TomoLayerHeight - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TomoTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TomoType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TopicAuthor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TopicKeyWords - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TopicSubject - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TopicTitle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalBlockTrayFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalCompensatorTrayFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalNumberOfExposures - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalReferenceAirKerma - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TotalTimeOfFlouroscopy - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransactionUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerFrequency - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerOrientationModifierSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerOrientationSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerPositionModifierSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerPositionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransducerType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransferSyntaxUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransferTubeLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransferTubeNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransmitCoilName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TransverseMash - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentControlPointDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentControlPointTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentDate - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentDeliveryType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentIntent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentMachineName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentMachineSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentProtocols - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentSessionApplicationSetupSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentSessionBeamSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentSites - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentStatusComment - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentSummaryCalculatedDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentSummaryMeasuredDoseReferenceSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentTerminationCode - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentTerminationStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TreatmentVerificationStatus - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TriggerSourceOrType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TriggerTime - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TriggerVector - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TriggerWindow - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Trim - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
dd_type - Variable in class gov.nih.mipav.model.dicomcomm.RTCEntry: DOCUMENT ME!
DD_TypeOfData - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TypeOfDetectorMotion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_TypeOfFilters - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_UID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_UltrasoundColorDataPresent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_UNDEFINED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_Units - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VariableFlipAngleFlag - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VerticesOfPolygonalCollimator - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VerticesOfPolygonalShutter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VideoImageFormatAcquired - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ViewCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ViewModifierCodeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ViewName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ViewNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ViewPosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VisitComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VisitGroupLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VisitStatusID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_VOILUTSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeNumber - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeOrientation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgePosition - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgePositionSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeSequence - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WedgeType - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WholeBodyTechnique - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WindowCenter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WindowCenterWidthExplanation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_WindowWidth - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_XFocusCenter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_XRayImageReceptorAngle - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_XRayOutput - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_XrayTubeCurrent - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_XrayTubeCurrentInuA - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_YFocusCenter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ZoomCenter - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
DD_ZoomFactor - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
dderiv(double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
ddnormalv3d - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
ddo - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Move: DICOM data object.
ddo - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: The DICOM data object.
ddof - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ddot(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.LSQR
ddot(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of 12/3/93 linpack ddot routine Original version created by Jack Dongarra Forms the dot product of two vectors.
ddot_(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dDotProduct(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
dDotTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
ddrgev(int, int[], int, boolean[], int[], double, double[][], int, double[][], double[][], double[][], double[][], int, double[][], double[][], int, double[], double[], double[], double[], double[], double[], double[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DDRGEV Original DDRGEV created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2007 ddrgev checks the nonsymmetric generalized eigenvalue problem driver routine dggev.
ddrive(String, RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ddrvbd(int, int[], int[], int, boolean[], int[], double, double[][], int, double[][], int, double[][], int, double[][], double[][], double[][], double[], double[], double[], double[], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
ddrvbd_test() - Method in class gov.nih.mipav.model.structures.jama.SVD: This routine is an extraction from the FORTRAN program version 3.4.1 DCHKEE of the code needed to drive ddrvbd in order to run ddrvbd in order to test the singular value decomposition drivers dgesvd and dgesdd.
ddrvge(boolean[], int, int[], int, double, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
ddrvls(boolean[], int, int[], int, int[], int, int[], int, int[], int[], double, boolean, double[][], double[][], double[][], double[][], double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of that part of version 3.1.1 LAPACK test routine DDRVLS used for testing the least squares driver routine DGELSS.
ddrvls_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This ddrvls_test routine is a port of a portion of the version 3.1.1 LAPACK test routine DCHKAA by Univ. of Tennessee, Univ.
ddrvpo(boolean[], int, int[], int, double, int, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
ddrvsg(int, int[], int, boolean[], int[], double, double[][], int, double[][], int, double[], double[][], int, double[][], double[][], double[], double[], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of that portion of the version 3.1 LAPACK test routine DDRVSG that tests the DSYGV that computes all eigenvalues and, optionally, eigenvectors of a real symmetric-definite generalized eigenproblem.
ddrvst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the part of version 3.1 LAPACK test routine DDRVST used to test dsyev.
ddrvst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of the part of version 3.4.0 LAPACK test routine DDRVST used to test dsyevx.
ddrvst(int, int[], int, boolean[], int[], double, double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[][], int, double[][], double[], double[][], double[], int, int[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of the part of version 3.4.0 LAPACK test routine DDRVST used to test dsyevr.
ddrvst_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive ddrvst, that tests symmetric generalized eigenvalue drivers.
ddrvst_test() - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive ddrvst, that tests symmetric generalized eigenvalue drivers.
ddrvst_test() - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive ddrvst, that tests symmetric generalized eigenvalue drivers.
ddse - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
ddst(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
ddst2D(int, int, double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
ddType - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Inital DICOM type.
ddTypeIndexes - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
dDumpLine(RandomAccessFile) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
de - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
de() - Method in class gov.nih.mipav.model.algorithms.ODE
de() - Method in class gov.nih.mipav.model.algorithms.ODEEP
DEAD - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DEAD_NON_PRINCIPAL - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DEAD_PRINCIPAL - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
deadFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas rescale factor.
deadFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas rescale factor.
deads - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
deadXSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas resacled X size.
deadXSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas resacled X size.
deadYSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvs rescaled Y size.
deadYSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvs rescaled Y size.
debug - Variable in class gov.nih.mipav.model.algorithms.libdt
debug - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
debug - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
debug(String) - Static method in class gov.nih.mipav.view.Preferences: If at least one debug level is turned on, output the string.
debug(String, boolean, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, boolean, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, char, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, char, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, double, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, double, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, Object, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, Object, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String) - Static method in class gov.nih.mipav.view.Preferences: If at least one debug level is turned on, output the string.
debug(String, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String) - Static method in class gov.nih.mipav.view.Preferences: If at least one debug level is turned on, output the string.
debug(String, String, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String, String) - Static method in class gov.nih.mipav.view.Preferences: If at least one debug level is turned on, output the string.
debug(String, String, String, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String, String, String) - Static method in class gov.nih.mipav.view.Preferences: If at least one debug level is turned on, output the string.
debug(String, String, String, String, String, int) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
debug(String, String, String, String, String, int, Preferences.LogLevel) - Static method in class gov.nih.mipav.view.Preferences: If the debug is turned on for the given level, output to the messageFrame.
DEBUG - gov.nih.mipav.view.Preferences.LogLevel
DEBUG - Variable in class gov.nih.mipav.model.algorithms.Cephes
DEBUG - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Set this flag to allow the output of volume file which result as part of the computation.
DEBUG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
DEBUG - Static variable in class gov.nih.mipav.view.ViewJFrameMessage: Used to indicate which of the 2 JTextAreas the data (message) is to be displayed.
DEBUG_ALGORITHM - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify debugging category for general output by algorithms.
DEBUG_COMMS - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify debugging category for general output by communications.
debug_deg_lists(int, int, int[], int, int, int[], int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DEBUG_FILEIO - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify debugging category for general output by FileIO.
debug_mark(int, int[], int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
debug_matrix(int, int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DEBUG_MINOR - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify debugging category for general output.
DEBUG_OUTPUT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
DEBUG_SCRIPTING - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify debugging category for output of scripting system messages.
debug_structures(int, int, int, int, int[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
debugAlgorithmBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Box to select logging level for Algorithm category
debugArea - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
debugCommsBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Box to select logging level for Comms category
DebugDump() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Writes some of the class data to disk.
debugFileIOBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Box to select logging level for FileIO category
debugFlag - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Debug flag.
debugLauncherStr - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
debugLevel(int) - Static method in class gov.nih.mipav.view.Preferences: Indicates whether debug is turned on for the given level.
DEBUGlevel - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
debugMatrix - Variable in class gov.nih.mipav.model.algorithms.Lmmin
debugMessageFrameAppend(String) - Static method in class gov.nih.mipav.view.Preferences: Appends the specified message to the message frame.
debugMessages - Variable in class gov.nih.mipav.model.algorithms.Lmmin
debugMinorBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Box to select logging level for Minor category
debugPoint(double[], String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Method to display current point values.
debugScriptingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Box to select logging level for Scripting category
debugSPane - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
dec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
dec_a(double[], int, PyWavelets.DiscreteWavelet, double[], int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dec_d(double[], int, PyWavelets.DiscreteWavelet, double[], int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dec_hi - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
dec_len - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
dec_lo - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
DEC_TO_ZERO(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Convert deciam number to 0
decayCorrected - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
decCancelBut - Variable in class gov.nih.mipav.model.file.FileJP2
decDefBut - Variable in class gov.nih.mipav.model.file.FileJP2
DecFac() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: get decreasing factor.
decFrameEnd - Variable in class gov.nih.mipav.model.file.FileJP2
decFrameStart - Variable in class gov.nih.mipav.model.file.FileJP2
deciF - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
decim - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
decim - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
decImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: the eigvecSrcImage without the last 6 time volumes *
decImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: the eigvecSrcImage without the last 6 time volumes *
decimalButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
decimalToDegreesMinutesSeconds(double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation: Converts a decimal degree angle into its corresponding DMS (degrees-minutes-seconds) component values, as a double array.
decimalToDegreesMinutesSecondsString(double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation: Converts a decimal degree angle into its corresponding DMS (degrees-minutes-seconds) representation as a string, of format: -1Â° 23' 4.56"
decimate(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Decimate the selected surfaces.
decimate(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Decimate the surface.
decimate(Point3f[], int[], ViewJProgressBar, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: A triangle decimator for a triangle mesh.
Decimate(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
decimateButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Decimate button.
decimateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Decimate button.
Decimated(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
decimateFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: If true then the extracted surface is decimated into a continuous level of detail surface (clod).
decimateFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: If true then the extracted surface is decimated into a continuous level of detail surface (clod).
decimateFlag - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: If true then the extracted surface is decimated into a continuous level of detail surface (clod).
decimateFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
decimateSurfaceCB - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
Decimation(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
Decimation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
decimationPercentage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Decimation Percentage
decipherInPlace(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyEncodedDataDirectoryBase
decision_function() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
decision_function() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
decision_map(double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
deciV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
decod_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: input file format 0: J2K, 1: JP2, 2: JPT
decod_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: input file format 0: J2K, 1: JP2, 2: JPT
decode(byte[], byte[], int) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Method to decode LZW compressed data.
decode_mcu - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
decode_mcu - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
decode_mcu(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_AC_first(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU_AC_FIRST - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_AC_first_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decode_mcu_AC_refine(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU_AC_REFINE - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_AC_refine_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decode_mcu_DC_first(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU_DC_FIRST - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_DC_first_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decode_mcu_DC_refine(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU_DC_REFINE - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_DC_refine_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decode_mcu_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECODE_MCU_SUB - Static variable in class gov.nih.mipav.model.file.libjpeg
decode_mcu_sub_huff(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decodeCanonEv(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor: Canon hex-based EV (modulo 0x20) to real number.
decodeCfaPattern(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase: Decode raw CFAPattern value Converted from Exiftool version 10.33 created by Phil Harvey http://www.sno.phy.queensu.ca/~phil/exiftool/ lib\Image\ExifTool\Exif.pm The value consists of: - Two short, being the grid width and height of the repeated pattern
decodeFileHeader(boolean) - Method in class gov.nih.mipav.model.file.FileMedVision: readFileHeader - reader image file header that encodes info about image.
decodeFirstRow(FileDicomJPEG.HuffTable, short[][]) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Decode the first raster line of samples at the start of the scan and at the beginning of each restart interval.
decodeImage(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Decode the input stream.
decodeImageData(byte[], int) - Method in class gov.nih.mipav.model.file.FileJP2
decodeLine(RandomAccessFile, int, Matrix4d) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Decodes the line in the matrix file.
decodeLine(RandomAccessFile, int, Matrix4f) - Method in class gov.nih.mipav.model.structures.TransMatrix: Decodes the line in the matrix file.
decodeLine(RandomAccessFile, int, Matrix4f, int) - Static method in class gov.nih.mipav.model.structures.TransMatrix: Reads a row of the matrix from file
decodeLine(String, int, Matrix4f) - Method in class gov.nih.mipav.model.structures.TransMatrix: Decodes the line in the matrix file.
decodeLine(String, Vector2f) - Method in class gov.nih.mipav.model.file.FileVOI: Converts string point (x,y) to Vector2f point.
decodeMatrixString(String) - Method in class gov.nih.mipav.model.structures.TransMatrix: Decodes the matrix from a string into the matrix array.
decodeMatrixString(String) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Decodes the matrix from a string into the matrix array.
decodeResourceFooter(boolean) - Method in class gov.nih.mipav.model.file.FileMedVision: decodeResourceFooter - This is the tricky function that decodes the the resource footer at the end of the MAC file The data is coded is very odd manner.
decodeROI(byte[]) - Method in class gov.nih.mipav.model.file.FileSVS
decodeROI(byte[]) - Method in class gov.nih.mipav.model.file.FileTiff
DecoderRAW - Class in gov.nih.mipav.model.file.rawjp2: This class is the main class of JJ2000's decoder.
DecoderRAW(ParameterList) - Constructor for class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Instantiates a decoder object, with the ParameterList object given as argument.
DecoderRAW(ParameterList, ImgScrollPane) - Constructor for class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Instantiates a decoder object, with the ParameterList object given as argument and a component where to display the image if no output file is specified.
DecoderRAWColor - Class in gov.nih.mipav.model.file.rawjp2: This class is the main class of JJ2000's decoder.
DecoderRAWColor(ParameterList) - Constructor for class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Instantiates a decoder object, with the ParameterList object given as argument.
DecoderRAWColor(ParameterList, ImgScrollPane) - Constructor for class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Instantiates a decoder object, with the ParameterList object given as argument and a component where to display the image if no output file is specified.
decodeSliceHeader(long, FileInfoMedVision, boolean) - Method in class gov.nih.mipav.model.file.FileMedVision: decodeSliceHeader - reads image slice header that encodes info about specific image slice.
decodeStr(String) - Static method in class gov.nih.mipav.view.MipavUtil: Decode a URL string using UTF-8 character encoding.
decodingArea - Variable in class gov.nih.mipav.model.file.FileJPEG2000
decOkBut - Variable in class gov.nih.mipav.model.file.FileJP2
decomp - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
decompose1DSignal() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
decomposeMatrix(Vector3d, Vector3d, Vector3d, Vector3d) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Decomposing a matrix into simple transformations TransMatrixd transformation sequence: Scale(Sx, Sy, Sz)*ShearXY*ShearXZ*ShearYZ* RotateX*RotateY*RotateZ*Translate(tx, ty, tz) ( *Perspective(Px, Py, Pz, Pw), no longer supported)
decomposeMatrix(Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TransMatrix: Decomposing a matrix into simple transformations TransMatrix transformation sequence: Scale(Sx, Sy, Sz)*ShearXY*ShearXZ*ShearYZ* RotateX*RotateY*RotateZ*Translate(tx, ty, tz) ( *Perspective(Px, Py, Pz, Pw), no longer supported)
decompress_data - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
decompress_data(libjpeg.jpeg_decompress_struct, byte[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decompress_data(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECOMPRESS_DATA - Static variable in class gov.nih.mipav.model.file.libjpeg
decompress_onepass(libjpeg.jpeg_decompress_struct, byte[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decompress_onepass(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECOMPRESS_ONEPASS - Static variable in class gov.nih.mipav.model.file.libjpeg
decompress_smooth_data(libjpeg.jpeg_decompress_struct, byte[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
decompress_smooth_data(libjpeg.jpeg_decompress_struct, short[][][]) - Method in class gov.nih.mipav.model.file.libjpeg
DECOMPRESS_SMOOTH_DATA - Static variable in class gov.nih.mipav.model.file.libjpeg
decompressedFile - Variable in class gov.nih.mipav.model.file.FileJPEG2000
deconv(double[], double[], double[], Vector<Double>, Vector<Double>, Vector<Double>, double[], double, double[], double, boolean, double, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
deconv_cSVD_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_cSVD_threshold - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_example() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
deconv_maxit - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
deconv_maxit_final - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
deconv_method - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_method - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
deconv_oSVD_OIthres - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_oSVD_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_SS_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_SVD_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconv_SVD_threshold - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
deconvolution4D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Calls Deconvolution for each volume in the time series image.
deconvolutionSep3D_2(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Single - Image deconvolution
deconvolutionSep3D_Dual(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Dual image deconvolution.
decParsOff - Variable in class gov.nih.mipav.model.file.FileJP2
decParsOn - Variable in class gov.nih.mipav.model.file.FileJP2
decRateField - Variable in class gov.nih.mipav.model.file.FileJP2
decrease_factor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
decrease_threshold_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
decreaseFontButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
decResChkBox - Variable in class gov.nih.mipav.model.file.FileJP2
decResTf - Variable in class gov.nih.mipav.model.file.FileJP2
decSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: Decreases the slice to be displayed by one and updates title frame.
decSliceEyeTracker() - Method in class gov.nih.mipav.view.ViewJFrameImage
dederiv(double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DEEP_GREY_10 - Static variable in class gov.nih.mipav.model.file.FileLIFF
DEEP_GREY_16 - Static variable in class gov.nih.mipav.model.file.FileLIFF
DEEP_GREY_9 - Static variable in class gov.nih.mipav.model.file.FileLIFF
deepCNNConvert() - Method in class gov.nih.mipav.view.ViewJFrameImage
deepCNNMap() - Method in class gov.nih.mipav.view.ViewJFrameImage
deepCNNTest() - Method in class gov.nih.mipav.view.ViewJFrameImage
deepCNNTrain() - Method in class gov.nih.mipav.view.ViewJFrameImage
deepKneesAtlas() - Method in class gov.nih.mipav.view.ViewJFrameImage
deepKneesMap() - Method in class gov.nih.mipav.view.ViewJFrameImage
defaceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: The algorithm corresponding to this dialog box.
defaceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: The algorithm corresponding to this dialog box.
Default - gov.nih.mipav.view.Preferences.DefaultDisplay
DEFAULT - Static variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
DEFAULT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
DEFAULT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Different DTI algorithms:
DEFAULT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Used to describe cursor mode, this means no VOIs will be drawn.
DEFAULT_ALPHA - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_BIG_ENDIAN_BYTE_ORDER - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
DEFAULT_BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
DEFAULT_CHUNK_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
DEFAULT_COLUMN_HEADERS_IMAGE_TABLE - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
DEFAULT_COLUMN_HEADERS_SERIES_TABLE - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
DEFAULT_COLUMN_HEADERS_STUDY_TABLE - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
default_config() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur
DEFAULT_DATA_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
default_decompress_parms(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
DEFAULT_DEPENDENT_ROW - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: default row is dependent, and column independent.
DEFAULT_DEPENDENT_ROW - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Default row is dependent, and column independent.
DEFAULT_DICTIONARY - Static variable in class gov.nih.mipav.model.file.DicomDictionary: DOCUMENT ME!
DEFAULT_DICTIONARY - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary: DOCUMENT ME!
DEFAULT_DICTIONARY_FILENAME - Static variable in class gov.nih.mipav.model.file.DicomDictionary: default dictionary file name, "dicom_dictionary.txt".
DEFAULT_DICTIONARY_FILENAME - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary: default dictionary file name, "dicom_dictionary.txt".
DEFAULT_EXTENTS - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
DEFAULT_GAUSSIAN_WINDOW_SIZE - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
DEFAULT_GROW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The default growth value for reallocations of the array representing the set.
DEFAULT_GROW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The default growth value for reallocations of the array representing the set.
DEFAULT_GROW - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The default growth value for reallocations of the array representing the set.
DEFAULT_GROW - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The default growth value for reallocations of the array representing the set.
DEFAULT_ICON_HEIGHT - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
DEFAULT_ICON_WIDTH - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
DEFAULT_IMAGE_MAX - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
DEFAULT_IMAGE_MIN - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
DEFAULT_IMAGE_MIN - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
DEFAULT_IMAGE_SIZE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: default values indicating minimum, maximum sizes are in PIXELS on a side for a magnification. this is to fix the magnification problems of very small images for which the arbitrary limits of lightbox image sizes of 25%-75% of the full size of an image. in practice the default max will reference the side with greatest magnitude ...
DEFAULT_IMAGE_TYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
DEFAULT_IMPORTANCE_MODE - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_INTENSITY_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
DEFAULT_LOCALE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
DEFAULT_LOG_LEVEL - Static variable in class gov.nih.mipav.view.Preferences: The default log level
DEFAULT_MIN_NODE_SIZE_CLASSIFICATION - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_MIN_NODE_SIZE_PROBABILITY - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_MIN_NODE_SIZE_REGRESSION - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_MIN_NODE_SIZE_SURVIVAL - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_MIN_YEAR - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
DEFAULT_MINPROP - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_NON_HEADER_START_LOCATION - Static variable in class gov.nih.mipav.model.file.FileMinc: The location, in bytes, of the portion of the minc file being written directly after the header.
DEFAULT_NOTES - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Default notes section text
DEFAULT_NOTES - Static variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Default notes section text
DEFAULT_NUM_NEIGHBOURS - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
DEFAULT_NUM_RANDOM_SPLITS - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_NUM_SPATIAL_BINS - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
DEFAULT_NUM_THREADS - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_NUM_TREE - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_OPTIMAL_ZOOM - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Constant to determine how many pixels would be optimal for the image to be initially zoomed to.
DEFAULT_PARAM - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
DEFAULT_PARAM - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
DEFAULT_PREDICTIONTYPE - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_PROBE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The default probe type probe, which is in cyan color.
DEFAULT_RADIUS - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
DEFAULT_RANDOM_SEED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
default_relstep - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
default_relstep - Variable in class gov.nih.mipav.model.algorithms.LsqFit
DEFAULT_RES - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
default_RTC_name - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: Default output file name for the RTC source output, "DICOM_RTC.java".
DEFAULT_SIZE - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Static indicating the default size of the byte buffer.
DEFAULT_SIZE - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Describes the initial size of the textual display area when the dialog is created.
DEFAULT_SIZE - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Describes the initial size of the textual display area when the dialog is created.
DEFAULT_SIZE - Variable in class gov.nih.mipav.view.dialogs.JDialogText: Describes the initial size of the textual display area when the dialog is created.
DEFAULT_SPLITRULE - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
DEFAULT_TAG_VERSION - Static variable in class gov.nih.mipav.model.file.FileDicomTagInfo: The default DICOM version string to assign to tags.
DEFAULT_UNIT_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
DEFAULT_XSCREEN_SPACE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
DEFAULT_XSCREEN_SPACE - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
DEFAULT_YSCREEN_SPACE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
DEFAULT_YSCREEN_SPACE - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
defaultAcceleratorFont - Static variable in class gov.nih.mipav.view.MipavUtil: A 10 point, serif font.
defaultAxisOrient - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultBlueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
defaultBlueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
defaultBurn - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Default burning point reference that represents the default probe ablation type.
DEFAULTBURN - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Define the default burn type value.
defaultButtonColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
defaultButtonSize - Static variable in class gov.nih.mipav.view.MipavUtil: The default size that all buttons should be.
DefaultColorMap(int...) - Constructor for enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
DefaultColorMap(int[], double[]) - Constructor for enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
DefaultColorMap(ContourPlot.ColorMap) - Constructor for enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
DefaultColorScheme(ContourPlot.ColorScheme) - Constructor for enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme
defaultCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Standard cursor: default.
defaultCursor - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
defaultCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
defaultDirectory - Static variable in class gov.nih.mipav.view.JPanelFileSelection: Specifies the default directory for the panel editor, which is the "user.home" directory, with a separator character appended at the end.
defaultDirectory - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
DefaultDisplay(String) - Constructor for enum gov.nih.mipav.view.Preferences.DefaultDisplay
defaultDisplayChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Available choices for displaying brightness/color display correlations for pixel values.
defaultFileData - Variable in class gov.nih.mipav.model.file.FileMetaImage
defaultFileDataExists - Variable in class gov.nih.mipav.model.file.FileMetaImage
defaultFileDataName - Variable in class gov.nih.mipav.model.file.FileMetaImage
defaultGreenInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
defaultGreenInput - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
defaultImageSize - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
defaultImageSize - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
defaultImaginaryInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
defaultLevel - Variable in class gov.nih.mipav.model.file.FileGESigna4X
defaultLevel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
defaultLUTa - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to LUT for image A and to the default LUT for image A.
defaultLUTb - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to LUT for image B and to the default LUT for image B.
defaultMaxDomain - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
defaultMaxRange - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
defaultMenuFont - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, serif font.
defaultMinDomain - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
defaultMinRange - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
defaultModeButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
defaultModeButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
defaultOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Checks the axisOrder and axisFlip data members.
defaultPluginDir - Static variable in class gov.nih.mipav.plugins.PluginUtil: The default storage location of plugins
defaultPreferredHeight - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: The default hight of the window, if it cannot be calculated.
defaultProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: The root of the default probe.
defaultProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Reference to the default probe geometry structures.
DefaultProbe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: DefaultPorbe
DefaultProbe() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Constructor, initialize the probe shapes.
defaultProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: The root branch group of the cyan default robe.
defaultProps - Static variable in class gov.nih.mipav.view.Preferences: A default list of properties used if the mipav.preferences file cannot be found.
defaultPts - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
defaultPts - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
defaultPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
defaultRealInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
defaultRedInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
defaultRedInput - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
defaultRTCclassName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: Default classname for the generated file being used in the Run Time Class, which allows access to information in the DICOM data dictionary.
defaults - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
defaultSet - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultShortcutModel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
defaultShortcutTable - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
defaultShortcutTable - Static variable in class gov.nih.mipav.view.Preferences: Hashtable that holds the default shortcuts
defaultStorageDir - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
defaultThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
defaultThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
defaultThresholdDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
defaultTSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultTStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
defaultValueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
defaultValueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
defaultValueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
defaultVelocityRotational - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
defaultVelocityTranslational - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: 3D MOUSE MOTION CONSTANTS
defaultVoxelSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
defaultWindow - Variable in class gov.nih.mipav.model.file.FileGESigna4X
defaultWindow - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
defaultXSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultXStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Variables for holding default values.
defaultYSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultYStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultZSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defaultZStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
defFieldUpdateMode - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
DefHilite - Static variable in class gov.nih.mipav.model.file.FileLIFF
defineArithmeticConditioning(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineArithmeticConditioning(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
defineBoundaries() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
defineHierarchicalProgression(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineHierarchicalProgression(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
defineHuffmanTables(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineHuffmanTables(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
defineInitialRegion(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Defines an initial region for face de-identification.
defineInterestRegion() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Defines the bounding region for face de-identification.
defineLInput() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
defineNumberOfLines(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineNumberOfLines(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
defineQuantizationTables(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineQuantizationTables(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
defineRestartInterval(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
defineRestartInterval(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
DEFINITION_SEPARATOR - Static variable in class gov.nih.mipav.view.Preferences: The character that separates an item from its value in a definition or mapping (such as in the user file type definitions).
deflaterStream - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
DEFLATIONARY_ORTHOGONALIZATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
deflationaryOrthogonalization - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
DefLoadPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
DEFN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Deform(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
Deform(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Projects a set of PC scores to the original space.
deformationB0T2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: deformation field from registering the B0 volume to the resampled T2 volume with VABRA
deformationB0T2Text - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
deformationField - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm
DeformationFieldResample3DM(float[], float[], int, int, int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
deformedDWI - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: DWI image series after applying the list of deformation fields
deformedSubject - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
deformedSubjectBinned - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
deformedSubjectCopy - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
DeformImage3D(float[], float[], float[], int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
DeformImage3D(ModelImage, ModelImage, float[], int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
DeformImage3D(ModelImage, ModelImage, ModelImage, int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
defpl - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: The default parameter list (arguments)
defpl - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: The default parameter list (arguments)
defpl - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: The default parameter list (arguments)
defpl - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: The default parameter list (arguments)
defSTxMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSTxPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSTyMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSTyPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSTzMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSTzPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSxMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSxPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSyMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSyPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSzMinus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
defSzPlus - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
Deg2Rad(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Converts from degrees to radians.
degree - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
degree - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
degree - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
degree - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
degree - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
degree - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
Degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
Degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
Degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
Degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
Degree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial
Degree2MaximumSpanningForest(CeresSolver.WeightedGraph<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
Degree2MaximumSpanningForestPreserveWeights() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Degree2MaximumSpanningForestStarGraph() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
degreeArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
degreeIncrement - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
degreeIncrement - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
degreeIncrementButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
degreeIncrementButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
degreeLabel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Label of the rotation degree.
degreeOfFiltering - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Used only with Rician noise filter.
degreeOfFiltering - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
DEGREES - gov.nih.mipav.model.file.FileInfoBase.Unit: Degrees
DEGREES - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: used for setting rotation
DEGREES - Static variable in class gov.nih.mipav.model.file.FileInfoBase
DEGREES - Static variable in class gov.nih.mipav.model.structures.TransMatrix: used for setting rotation
DEGREES - Static variable in class gov.nih.mipav.model.structures.TransMatrixd: used for setting rotation
DEGREES_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - degrees.
degreesMinutesSecondsToDecimal(MetadataExtractor.Rational, MetadataExtractor.Rational, MetadataExtractor.Rational, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation: Converts DMS (degrees-minutes-seconds) rational values, as given in com.drew.metadata.exif.GpsDirectory, into a single value in degrees, as a double.
degreesWidthText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
degreesWidthText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
degreeText - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Textfield of the roation degree.
deinvmap(double[][], double[][], double[], double[][], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DEJAC7(double[][], int, double, double[], int, int, double[], double[], double, double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
delaunay - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Edgeset of Delaunay triangulation ( L2-norm).
delaunay() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
delaunay_swap_test(double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
delaunay.Edge - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
delaunay.Halfedge - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
delaunay.Point - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
delaunay.Site - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
delaunay.Triangle - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
delay - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: autosave elements.
DELAY - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
delayBetweenVolumes - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
DELEG7(double[][], int, double, double[], double[], boolean, int, int, double[], double[], double, double[][], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
delegate - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
delegate - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator: Spliterator<Pixel> acting as delegate of this spliterator
delegate - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
delete - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
delete() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
delete(int) - Method in class gov.nih.mipav.model.structures.VOIBase: Deletes the specified position on the curve.
delete(int) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
DELETE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
DELETE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
DELETE_INTENSITY_LINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: used in the popup menu when the user right-clicks over a voi intensity line.
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
DELETE_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
DELETE_POINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
deleteActiveVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
deleteAdjRotVOIs() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Deletes all ROTATIONCENTER and ADJMARK VOIs.
deleteAdjustableVOIs() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Deletes all ADJMARK VOIs.
deleteAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
deleteAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
deleteAllFiles(File) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
deleteAllVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
deleteAllVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
deleteAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
deleteAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
deleteBitFlag(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
DeleteBitFlag(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
DeleteBlock(CeresSolver.ParameterBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
DeleteBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
DeleteBlockInVector(Vector<CeresSolver.ParameterBlock>, CeresSolver.ParameterBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
DeleteBlockInVector(Vector<CeresSolver.ResidualBlock>, CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
deleteButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Delete the captured image button.
deleteButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
deleteButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
deleteButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
deleteButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
DELETED - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
DELETED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
DELETED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Debugger to test dir deletion.
deleteDir(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Debugger to test dir deletion.
deleteDirectory(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
deleteFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Cancel Button has been pressed: Copy the unaltered original data into the ModelImage.
deleteFrom(JList) - Method in class gov.nih.mipav.view.JPanelListController: Removes all selected items in the given list.
deleteFrom(JTree) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI
deleteFrom(JTree) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI
deleteFrom(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController: Removes all selected items in the given tree.
deleteFunct(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Deletes the indicated function.
deleteFunct(int) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Deletes the indicated function from the graph.
deleteImages() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
deleteItem(String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Deletes the item specified by name.
deleteItem(String, boolean, boolean) - Method in class gov.nih.mipav.view.ViewUserInterface: Deletes the item specified by name.
deleteMenu - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
deleteMenu(JMenu) - Method in class gov.nih.mipav.view.ViewUserInterface: Recursive deletion algorithm to delete JMenus which contain no JMenuItems exclusive of JMenus in any children.
deleteNode(Node) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Delete the input node and it's children nodes: Cannot delete the root node.
deleteNode(Node, Node, Node, Vector<Node>) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Recursively deletes children from the tree.
deleteObjects(int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Deletes objects larger than maximum size indicated and objects smaller than the indicated minimum size.
deleteObjects(int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Deletes objects larger than maximum size indicated and objects smaller than the indicated minimum size.
deleteObserver(Observer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
deleteObserver(Observer) - Method in interface gov.nih.mipav.model.util.Observable: Deletes an observer from the set of observers of this object.
deleteObservers() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
deleteObservers() - Method in interface gov.nih.mipav.model.util.Observable: Clears the observer list so that this object no longer has any observer.
deleteOrphans(File[]) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
deletePluginDependents(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
deletePluginFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
deletePoint(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: If a point is selected of the given type (reference or adjusted) delete the point and reset the.
deletePts() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
deleteReferenceVOIs() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Deletes all REFMARK VOIs.
deleteRefRotVOIs() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Deletes all REFMARK and ROTATIONCENTER VOIs.
DeleteRowBlocks(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
DeleteRows(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
deleteSelectedCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
deleteSelectedCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
deleteSelectedPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
deleteSelectedPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
deleteSelectedPoint(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Deletes the selected annotation or lattice point.
deleteSelectedVOI(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
deleteSelectedVOI(boolean) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Deprecated.
deleteSelection - Variable in class gov.nih.mipav.view.JPanelListController: 'X'.
deleteSelection - Variable in class gov.nih.mipav.view.JPanelTreeController: 'X'.
deleteSelection - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Delete menu icon item.
deleteSelection - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
deleteSlices() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Delete selected slices.
deleteStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
deleteTagButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
deleteTempFile() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest
deleteVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
deleteVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from ViewJComponentTriImage to delete the VOIProtractor.
deleteVOI(VOIBase, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Deletes the input VOIBase from the VOI.
deleteVOIActivePt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
deleteVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
deleteVOIs() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Deletes all VOIs.
deleteVOIs() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Delete all VOIs.
deleteVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
deleteVolumeVOI() - Method in class gov.nih.mipav.model.structures.VOIBase
delim - Variable in class gov.nih.mipav.model.file.DelimitedRandomAccessFile: The delimiter that separates each str chunk.
DELIM - Static variable in class gov.nih.mipav.model.structures.VOIStatisticalProperties
DelimitedRandomAccessFile - Class in gov.nih.mipav.model.file: This class is a random access file that has an internal delimiter for fast processing of text files.
DelimitedRandomAccessFile(File, String, char) - Constructor for class gov.nih.mipav.model.file.DelimitedRandomAccessFile: This constructor first performs the same actions as RandomAccessFile(File file, String mode), it then sets the file's delimiter to delim.
DelimitedRandomAccessFile(String, String, char) - Constructor for class gov.nih.mipav.model.file.DelimitedRandomAccessFile: This constructor first performs the same actions as RandomAccessFile(String name, String mode), it then sets the file's delimiter to delim.
DELIMITER - Static variable in class gov.nih.mipav.plugins.ManifestFile: Standard delimiter after manifest file.
DELIMITER - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
delinkProgressToAlgorithm(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Disconnect this algorithm with the progress bar which holds a reference to this algorithm.
delinkProgressToAlgorithmMulti(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
dellocate_edge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
dellocate_face_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
dellocate_halfedge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
dellocate_vertex_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
delsn - Variable in class gov.nih.mipav.model.algorithms.ODE
delsn - Variable in class gov.nih.mipav.model.algorithms.ODEEP
delta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
delta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
delta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
delta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Used in adaptive truncated vector median filter used on color images If the changes in the RGB components are all less than a threshold delta then the color image pixels are not changed, otherwise they are replaced by the ATVMF.
delta - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
delta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
delta - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
delta - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
delta - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
DELTA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
delta_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
delta_gradient_history_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
delta_offset() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
delta_offset_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
delta_tol - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
delta_x_dot_delta_gradient_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
delta_x_history_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
deltaBackward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
delTabButton - Variable in class gov.nih.mipav.view.ViewJFrameMessage: DOCUMENT ME!
deltaForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
deltaLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
deltaMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
deltaMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
deltap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
deltaSetFromField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Boolean which indicates that the seed point intensity bounds were changed from one of the text fields and not from one of the sliders.
deltat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
deltaT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Time step The defalut is 0.05 for 2D and 0.025 for 3D.
deltaT - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
deltaWeight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
deltax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
deltay - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
demap(double[][], double[][], double[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DeMap(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity
DeMap(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: The inverse of the lookup table transform.
DeMap(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Maps the vector into [0;255].
DeMap(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction
demo() - Method in class gov.nih.mipav.model.algorithms.Covdet
demoClassify() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
demoClustDiag() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
demoClustDiag5() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
demoClustFull() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
demoClustFull5() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
DemonsRegistrationLite - Class in gov.nih.mipav.model.algorithms.registration: This algorithm handles registration algorithms of images with the Demons algorithm and a simple multiscale technique (Demons variant from Tom Vercauteren's 2009 paper, "Diffeomorphic demons: Efficient non-parametric image registration by Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache, NeuroImage, 45, 2009, S61-S72.)
DemonsRegistrationLite(float[], float[], int, int, int, float, float, float, int, int, int, float, float, float, float, float, int, int, int, float[][]) - Constructor for class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: constructor note: the membership function mems_ must have sum = 0 on the masked areas
demoSplitClasses() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
demri3Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: DOCUMENT ME!
denoiseBW() - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
denoiseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
denoiseColor() - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
denom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
denom - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
denom - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: denominator of gaussian coeff.
denom - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: denominator of gaussian coeff.
denom - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
dense - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
dense_ata - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
DENSE_DEGREE(double, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DENSE_DQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
dense_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
dense_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
dense_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
DENSE_NORMAL_CHOLESKY - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
DENSE_QR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
dense_rotate - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
DENSE_SCHUR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
DENSE_SVD - gov.nih.mipav.model.algorithms.CeresSolver.CovarianceAlgorithmType
DENSE_USER - Variable in class gov.nih.mipav.model.algorithms.CVODES
denseGETRF(double[][], int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
denseGETRS(double[][], int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
DenseJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseJacobianWriter
DenseLinearAlgebraLibraryType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.DenseLinearAlgebraLibraryType
DenseLinearSolverTest1() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseLinearSolverTest2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseNormalCholeskySolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseNormalCholeskySolver
DenseQRSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver
DenseSchurComplementSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseSchurComplementSolver
DenseSize(int, float) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DenseSparseMatrix(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
DenseSparseMatrix(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
DenseSparseMatrix(CeresSolver.TripletSparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
DenseSparseMatrix(Matrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
DenseSparseMatrixTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestColumnNorm() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestColumnNorm() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseSparseMatrixTestLeftMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestLeftMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseSparseMatrixTestRightMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestRightMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseSparseMatrixTestScale() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestScale() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DenseSparseMatrixTestToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
DenseSparseMatrixTestToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
density - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean
density - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean2
density - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared
density - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared2
density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrixRandomMatrixOptions
density(double, double, double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
density_max(double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
density_unit - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
deparam(double[][], double[], double[][], double[][], double[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DEPENDENT_ENTRY - Static variable in class gov.nih.mipav.plugins.ManifestFile: Signifies manifest file lists a dependent after delimiter.
dependent_variable_name - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
dependent_varID - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
dependent_varID - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
depfun(double[], int, double[], double[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
deplot(double[][], double[], double[][], double[], double[], double[], int, int, int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DEPPJ8(double, double[], int, int, double[], double[], double, double[][], double[], double[], int, double, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DEPPJ9(double[][], int, double, double[], int, int, double[], double[], double, double[][], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DEPPL8(double, double[], double[], boolean, int, int, double[], double[], double, double[][], double[], double[], int, double, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DEPPL9(double[][], int, double, double[], double[], boolean, int, int, double[], double[], double, double[][], double[], double[], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
depth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
depth - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
depth - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
depth - Variable in class gov.nih.mipav.model.file.FileGESigna5X
depth - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 16 - number of bits.
depth - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
depth - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The maximum depth within the brain's surface to sample image intensities, by default set to 5.
depth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
depth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RefineFunction
depth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
depth() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Depth() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Used by AAM appearance model to get dimension
Depth(long) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
DEPTH_THRESH - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream
depthAndOffset(int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
DepthAndOffset(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
DepthAndOffset(long, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
DepthMask - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
DepthShift - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
depthTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Field for entering the maximum depth.
dequad(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
deref(delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
dereference() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
deRegister() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning: Removes this ContourPlot.CoordSysPanning from the associated canvas' mouse and mouse motion listeners.
deRegister() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom: Removes this ContourPlot.CoordSysScrollZoom from the associated canvas' mouse wheel listeners.
deregisterAllListeners() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
deRegisterListener(SpaceNavigatorListener) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
deriv_x_left(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
deriv_x_right(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
deriv_y_down(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
deriv_y_up(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
derivative - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
derivative() - Method in class gov.nih.mipav.model.structures.RealPolynomial
derivative() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
derivative() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
DerivativeGrayProfiles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
derivativeOrder - Variable in class gov.nih.mipav.model.algorithms.Bessel: order of derivative, 0 or 1.
derivativeOrder - Variable in class gov.nih.mipav.model.algorithms.BesselEP: order of derivative, 0 or 1.
derivativeOrder - Variable in class gov.nih.mipav.model.GaussianKernelFactory
derivativeScale - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Gaussian scale for derivative operations.
derivativeScale - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
derivedImage - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
deriveGains - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
derivOrder - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: derivative order in each dimension.
derivOrder - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: derivative order in each dimension.
derrbd() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of that portion of version 3.1 LAPACK test routine DERRBD used to test the error exits for dgebrd, dorgbr, dormbr, and dbdsqr.
derred() - Method in class gov.nih.mipav.model.structures.jama.SVD
derrge() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
derrlq() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of a portion of version 3.1 LAPACK routine DERRLQ
derrls() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of that portion of version 3.1 LAPACK test routine DERRLS used to test the error exits of the least squares driver routine DGELSS.
derrpo() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
derrqr() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of a portion of version 3.1 LAPACK routine DERRQR. * Univ. of Tennessee, Univ. of California Berkeley and NAG Ltd..
derrvx() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
derrvx() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
Desc() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: Get the console mode description
DESC_NUM_TOTAL_HIST - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
DESC_NUMEL - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
desc_rad_fctr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
desc_ref - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
desc_sig_fctr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
desc_src - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
DESCALE(int, int) - Method in class gov.nih.mipav.model.file.libjpeg
descending - Variable in class gov.nih.mipav.model.structures.TableSorter.Arrow: DOCUMENT ME!
DESCENDING - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
descrip - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: String with a max character length of 80 used to describe image.
descrip - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Any text you like
descrip - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: String with a max character length of 80 used to describe image.
descrip - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
description - Variable in class gov.nih.mipav.model.dicomcomm.RTCEntry: DOCUMENT ME!
description - Variable in class gov.nih.mipav.model.file.FileInfoCZI
description - Variable in class gov.nih.mipav.model.file.FileInfoJSON: Use serialVersionUID for interoperability.
description - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
description - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment: Elements.
description - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
description - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Project: Elements.
description - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Screen: Elements.
description - Variable in class gov.nih.mipav.model.file.FileTypeInfo
description - Variable in class gov.nih.mipav.model.file.XMLParameter: Parameter description.
description - Variable in class gov.nih.mipav.model.file.XMLPSet: Description of parameter.
description - Variable in enum gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
description - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: DOCUMENT ME!
description - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
description - Variable in enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
descriptionField - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text pane for user inputed bug description
descriptions - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: description strings for each filterType.
descriptorarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
descriptorarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
descriptors1 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
descriptors2 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
deselectMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Sets buttons to deselected, then calls refreshImagePaint to reset paint as mask.
desired - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
desired_number_of_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
desiredArraySize - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
desiredImageNumber - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
desiredPixelUnitsArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
destArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
destArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
destDirs - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
destExitStatusArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
destExitStatusArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
destExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: result image extents *
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: extents for extracted 3D subset
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
destExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
destExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: result image extents *
destFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Destination flag indicating if a destination (result) image is generated.
destFlag - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: DOCUMENT ME!
destFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
destFormatStr - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Destination image.
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Fuzzy images require 1 image for each class Hard images 1 image with assigned clusters.
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: Fuzzy images require 1 image with double values Hard images 1 image with class numbers.
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: Fuzzy images require 1 image for each class Hard images 1 image with assigned clusters.
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
destImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
destImage - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
destImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
destImage - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: images
destImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Destination image where results are to be stored.
destImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult: final image
destImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Destination image where results are to be stored.
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: images
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The attenuated image.
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: destination image
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: destination image
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: destination image
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
destImage - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
destImage - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: The image containing the 2D histogram.
destImage - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The image containing the 2D histogram.
destImageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: DOCUMENT ME!
destImageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
destImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Destination image (gray type) to store the Blue channel of the source image.
destImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Destination image (gray type) to store the Brightness channel of the source image.
destImageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: DOCUMENT ME!
destImageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
destImageG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Destination image (gray type) to store the Green channel of the source image.
destImageH - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Destination image (gray type) to store the Hue channel of the source image.
destImageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: DOCUMENT ME!
destImageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
destImageR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Destination image (gray type) to store the Red channel of the source image.
destImageS - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Destination image (gray type) to store the Saturation channel of the source image.
destImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: table
destImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: table
destImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: table
DESTINATION - Static variable in class gov.nih.mipav.view.DICOMDisplayer: A destination type message is the file directory to which the images are going.
DestinationBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: or if the source image is to be replaced.
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: use later.
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
destinationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: panel that hold the new image radio button.
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: panels
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
destinationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: DOCUMENT ME!
destinationRadioGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: radio groups
destMinExtent - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
destNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
destNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: DOCUMENT ME!
destNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
destResolutions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
Destroy_CompCol_Matrix(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Destroy_CompCol_Permuted(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Destroy_CompRow_Matrix(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Destroy_Dense_Matrix(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
destroy_parameters(FileJPEG2000.opj_decompress_parameters) - Method in class gov.nih.mipav.model.file.FileJPEG2000
Destroy_SuperMatrix_Store(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Destroy_SuperNode_Matrix(SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
destroyFileCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Toggles whether or not the plugin file should be deleted from MIPAV's class directory.
destroyOutput() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
destroyPreview() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
destroyRAM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
DestructorCountingCostFunction(int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DestructorCountingCostFunction
destStub - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
destTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: table model
destTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: table model
destTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: table model
destType - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
destuImage - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
destuImage - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
destuImage - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
destuImage - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
destuImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
destuImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
destuImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
destuImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
destuImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
destvImage - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
destvImage - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
destvImage - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
destvImage - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
destvImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
destvImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
destvImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
destvImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
destvImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
det(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
det(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.VOIContour
Det() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Calculates the determinant of a square matrix up to the 3rd order.
det2(double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet
det2MM(double[][], double[][], double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
detach(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
detachVolRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Detach volume render branch group.
detachVolRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Detach volume render branch group.
DetailBilateralFilter(double[][], double[][], double[][], double[][], double, double, int, double, double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
DetailBilateralFilterLUT(double[][], double[][], double[][], double[][], double, double, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
detailedDebugging - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
detailedSummaryPrinting - Variable in class gov.nih.mipav.model.algorithms.NL2sol
detailLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The level of detail slider label.
detailLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The level of detail slider label.
details - Variable in class gov.nih.mipav.model.algorithms.NESolve
detailSlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Level of detail slider.
detailSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Level of detail slider.
detailSliderLabels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The labels below the detail slider.
detailSliderLabels - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The labels below the detail slider.
detBG(double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
detBGTG(double[][][], double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
detCG(double[][][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
detCGTG(double[][][][], double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
DETCHANNEL_AMPLIFIER_GAIN_BC1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_AMPLIFIER_GAIN_BC2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_AMPLIFIER_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_AMPLIFIER_OFFSET_BC1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_AMPLIFIER_OFFSET_BC2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_DETECTION_CHANNEL_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_DETECTOR_GAIN_BC1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_DETECTOR_GAIN_BC2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_DYE_FOLDER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_DYE_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_ACQUIRE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_AMPLIFIER_GAIN_FIRST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_AMPLIFIER_GAIN_LAST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_AMPLIFIER_OFFS_FIRST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_AMPLIFIER_OFFS_LAST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_COUNTING_TRIGGER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_INTEGRATION_MODE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_PINHOLE_DIAMETER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_ENTRY_SPECIAL_MODE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_FILTER_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_FILTER_SET_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_INTEGRATOR_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_PINHOLE_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_POINT_DETECTOR_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_SPECTRAL_SCAN_CHANNELS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_SPI_WAVELENGTH_END - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DETCHANNEL_SPI_WAVELENGTH_START - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
detect - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 44 detector type.
detect(int[], Vector<Point2i>) - Method in class gov.nih.mipav.model.algorithms.OastDetector9_16
detect_extrema(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
detect_super_cols(int, int, int, int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
detectHoles(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern
detectImpl(ModelImage, Vector<AlgorithmBRISK.KeyPoint>, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
detectionWavelength - Variable in class gov.nih.mipav.model.file.FileInfoCZI
Detector(String, String, String, Float, Float, Float, Integer, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector: Creates a new Detector object.
detectorBinning - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorDigitalGain - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorEMGain - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorGain - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorHeadNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
detectorID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector
detectorOffset - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectOrphans() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
detectorReadOutRate - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorRefDetectorID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
detectorRefDocumentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DetectorRef.
detectorRefGain - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
detectorRefOffset - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
detectors - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
detectorUseBrightnessContrastCorrection - Variable in class gov.nih.mipav.model.file.FileInfoCZI
detectorVoltage - Variable in class gov.nih.mipav.model.file.FileInfoCZI
DetectStructure(CeresSolver.CompressedRowBlockStructure, int, int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
detectTissue() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Detect the body tissue component.
Determinant() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
Determinant(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
determineExtent(float) - Method in class gov.nih.mipav.model.GaussianKernelFactory
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Associate one side of the kernel size with selectBox choice.
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Associate one side of the kernel size with selectBox choice.
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Associate one side of the kernel size with selectBox choice.
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Associate one side of the kernel size with selectBox choice.
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Associate one side of the kernel size with selectBox choice.
determineKernelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Associate one side of the kernel size with selectBox choice.
determineMaxAvg(float, float, float, float[], float[], float[]) - Static method in class gov.nih.mipav.model.structures.VOI: Gathers max and average statistics to build guessing intervals
determineMaximumSize() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Associate one side of the maximum kernel size with selectBox choice when adaptive median filtering is selected.
determineNull() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
determineNull() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
determineNull() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
determineNull() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
determineNull(JTextField, JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
determineSOPClassUID(DICOM_Object, DICOM_Object) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Determines relevant SOP Class UID for a storage operation.
determineSOPClassUIDAndPush(String, DICOM_Object, DICOM_Object, DICOM_Object) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Puts the required SOP class UID into the DICOMObject (Command).
deterministic_varIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
deterministic_varIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
detGM(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
detTG(double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
deviationDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
DEVICE_DEPENDENT_CMYK - Static variable in class gov.nih.mipav.model.file.FileBMP
DEVICE_DEPENDENT_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
deviceField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
devices - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
deviceScalingName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
dexpand(int[], SuperLU.MemType, int, int, SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
df - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
df - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
df - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
df - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_cen_r
df - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_uncen
dfault(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
dfault(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
dfault(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
dfcapl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
dfgmr(int, SuperLU.SuperMatrix, double[], double[], double, int, int[], RandomAccessFile) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dfill(double[], int, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dfill_diag(int, SuperLU.NCformat) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dFillRHS(SuperLU.trans_t, int, double[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DFPintoAFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
DFPintoAFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
DFPintoFRET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
DFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
DFS(int[][], int, int, int, int, int[], int[], int[], int[], boolean[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
DFS(int, int, ModelImage, int[][], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
DFS(int, int, ModelImage, int[][], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
DFS(int, int, ModelImage, int[][], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
DFS(int, int, ModelImage, int[][], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
DFS(int, int, ModelImage, int[][], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
DFS_searchOnBottom(int[][], int, int, int, int, int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
DFS_searchOnLeft(int[][], int, int, int, int, int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
DFS_searchOnRight(int[][], int, int, int, int, int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
DFS_searchOnTop(int[][], int, int, int, int, int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
DFS_searchSingleIslandOnLeft(int[][], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal
DFS_searchSingleIslandOnRight(int[][], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int[], boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal
dg(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
dg_mean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.LandData
dgamln(double, int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel: DGAMLN COMPUTES THE NATURAL LOG OF THE GAMMA FUNCTION FOR Z.GT.0.
dgamln(DoubleDouble, int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP: DGAMLN COMPUTES THE NATURAL LOG OF THE GAMMA FUNCTION FOR Z.GT.0.
DGAMMA(double) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dgaussianData - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian
dgaussPt(int[]) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Calculates the Gaussian function at a point.
dgdA(double) - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Partial derivative of gaussian with respect to A.
dgdsigma(double) - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Partial derivative of gaussian with respect to sigma.
dgdx(double) - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Partial derivative of gaussian with respect to x.
dgebd2(int, int, double[][], int, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DGEBD2.
dgebrd(int, int, double[][], int, double[], double[], double[], double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dgecon(char, int, double[][], int, double, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgeequ(int, int, double[][], int, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgeequ(int, int, double[][], int, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgelq2(int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DGELQ2 -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- November 2006 ..
dgelqf(int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DGELQF -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- November 2006 ..
dgelqs(int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK routine DGELQS.
dgels(char, int, int, int, double[][], int, double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dgelss(int, int, int, double[][], int, double[][], int, double[], double, int[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
Dgelss(int, int, double[][], int, double[][], double[], int[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dgemm(char, char, int, int, int, double, double[][], int, double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 2/8/89 Blas routine Original version written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.
dgemm(char, char, int, int, int, double, double[][], int, double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU: This is a port of the 2/8/89 Blas routine Original version written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.
dgemv(char, int, int, double, double[][], int, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Routine ported from 10/22/86 blas dgemv subroutine Original version written by: Jack Dongarra, Argonne National Lab.
dgemv_(char, int, int, double, double[], int, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgennd(int, int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DGENND.
dGenXtrue(int, int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgeql2(int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dgeqlf(int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dgeqls(int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dgeqp3(int, int, double[][], int, int[], double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dgeqr2(int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK routine DGEQR2 Original DGEQR2 created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd.
dgeqrf(int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK routine DGEQRF Original DGEQRF created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dgeqrf computes a QR factorization of a real m by n matrix A: A = Q * R.
dgeqrs(int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DGEQRS.
dger(int, int, double, double[], int, double[], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 10/22/86 Blas routine DGER Original version written by: Jack Dongarra, Argonne National Lab.
dger_(int, int, double, double[], int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgerfs(char, int, int, double[][], int, double[][], int, int[], double[][], int, double[][], int, double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgesdd(char, int, int, double[][], int, double[], double[][], int, double[][], int, double[], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
dgesv(int, int, double[][], int, int[], double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
Dgesv(int, double[][], int, double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dgesvd(char, char, int, int, double[][], int, double[], double[][], int, double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
Dgesvd(int, int, double[][], char, char, double[][], double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dgesvx(char, char, int, int, double[][], int, double[][], int, int[], char[], double[], double[], double[][], int, double[][], int, double[], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dget01(int, int, double[][], int, double[][], int, int[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dget02(char, int, int, int, double[][], int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DGET02.
dget03(int, double[][], int, double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dget04(int, int, double[][], int, double[][], int, double, double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DGET04.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dget06(double, double) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DGET06.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dget07(char, int, int, double[][], int, double[][], int, double[][], int, double[][], int, double[], boolean, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dget51(int, int, double[][], int, double[][], int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DGET51 Original DGET51 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dget51 generally checks a decomposition of the form A = U B V' where ' means transpose and U and V are orthogonal.
dget52(boolean, int, double[][], int, double[][], int, double[][], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DGET52 Original DGET52 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dget52 does an eigenvector check for the generalized eigenvalue problem.
dgetf2(int, int, double[][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgetrf(int, int, double[][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
Dgetrf(int, double[][], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dgetri(int, double[][], int, int[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgetrs(char, int, int, double[][], int, int[], double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dgetv0(int[], String, int, boolean, int, int, double[][], int, double[], double[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_first - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_inits - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_iseed - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_iter - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_msglvl - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_orth - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgetv0_rnorm0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgfl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
dggbak(char, char, int, int, int, double[], double[], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DGGBAK Original DGGBAK created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dggbak forms the right or left eigenvectors of a real generalized eigenvalue problem A*x = lambda*B*x, by backward transformation on the computed eigenvectors of the balanced pair of matrices output by dggbal.
dggbal(char, int, double[][], int, double[][], int, int[], int[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DGGBAL Original DGGBAL created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dggbal balances a pair of general real matrices (A,B).
dggev(char, char, int, double[][], int, double[][], int, double[], double[], double[], double[][], int, double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK driver routine DGGEV Original DGGEV created by Univ. of Tennessee, Univ.
dggev_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive ddrgev in order to test DGGEV, that handles the nonsymmetric generalized eigenvalue problem.
dgghrd(char, char, int, int, int, double[][], int, double[][], int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DGGHRD Original DGGHRD created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dgghrd reduces a pair of real matrices (A,B) to generalized upper Hessenberg form using orthogonal transformations, where A is a general matrix and B is upper triangular.
DGMAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
DGPOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DGPOL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
dgride - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
dgridf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
dgscon(char, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double, double[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgsequ(SuperLU.SuperMatrix, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgsisx(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], int[], char[], double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], SuperLU.GlobalLU_t, SuperLU.mem_usage_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgsitrf(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int, int, int[], double[], int, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgsrfs(SuperLU.trans_t, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], char, double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgssv(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgssvx(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], int[], char[], double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], double[], double[], SuperLU.GlobalLU_t, SuperLU.mem_usage_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgst01(int, int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgst02(SuperLU.trans_t, int, int, int, SuperLU.SuperMatrix, double[], int, double[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgst04(int, int, double[], int, double[], int, double, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgst07(SuperLU.trans_t, int, int, SuperLU.SuperMatrix, double[], int, double[], int, double[], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgstrf(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int, int, int[], double[], int, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgstrs(SuperLU.trans_t, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dgtcon(char, int, double[], double[], double[], double[], int[], double, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgtrfs(char, int, int, double[], double[], double[], double[], double[], double[], double[], int[], double[][], int, double[][], int, double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgtsl(int, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the FORTRAN routine whose header is given below: c c dgtsl given a general tridiagonal matrix and a right hand c side will find the solution. c c on entry c c n integer c is the order of the tridiagonal matrix. c c c double precision(n) c is the subdiagonal of the tridiagonal matrix. c c(2) through c(n) should contain the subdiagonal. c on output c is destroyed. c c d double precision(n) c is the diagonal of the tridiagonal matrix. c on output d is destroyed. c c e double precision(n) c is the superdiagonal of the tridiagonal matrix. c e(1) through e(n-1) should contain the superdiagonal. c on output e is destroyed. c c b double precision(n) c is the right hand side vector. c c on return c c b is the solution vector. c c info integer c = 0 normal value. c = k if the k-th element of the diagonal becomes c exactly zero. the subroutine returns when c this is detected. c c linpack. this version dated 08/14/78 . c jack dongarra, argonne national laboratory.
dgtsl(int, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the FORTRAN routine whose header is given below: c c dgtsl given a general tridiagonal matrix and a right hand c side will find the solution. c c on entry c c n integer c is the order of the tridiagonal matrix. c c c double precision(n) c is the subdiagonal of the tridiagonal matrix. c c(2) through c(n) should contain the subdiagonal. c on output c is destroyed. c c d double precision(n) c is the diagonal of the tridiagonal matrix. c on output d is destroyed. c c e double precision(n) c is the superdiagonal of the tridiagonal matrix. c e(1) through e(n-1) should contain the superdiagonal. c on output e is destroyed. c c b double precision(n) c is the right hand side vector. c c on return c c b is the solution vector. c c info integer c = 0 normal value. c = k if the k-th element of the diagonal becomes c exactly zero. the subroutine returns when c this is detected. c c linpack. this version dated 08/14/78 . c jack dongarra, argonne national laboratory.
dgtt01(int, double[], double[], double[], double[], double[], double[], double[], int[], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgtt02(char, int, int, double[], double[], double[], double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgtt05(char, int, int, double[], double[], double[], double[][], int, double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgttrf(int, double[], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgttrs(char, int, int, double[], double[], double[], double[], int[], double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
DGTTS2(int, int, int, double[], double[], double[], double[], int[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dgxfac_gqtstp - Variable in class gov.nih.mipav.model.algorithms.NL2sol
dh(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
DHDVText - Static variable in class gov.nih.mipav.model.file.FileLIFF
dhgeqz(char, char, char, int, int, int, double[][], int, double[][], int, double[], double[], double[], double[][], int, double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DHGEQZ Original DHGEQZ created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dhgeqz computes the eigenvalues of a real matrix pair (H,T), where H is an upper Hessenberg matrix and T is upper triangular, using the double-shift QZ method.
DHP - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Hierarchical Progression segment identifier.
DHP - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DHP - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
dhs(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
DHT - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Huffman Table segment identifier.
DHT - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DHT - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
di - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
di_pochhammer(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
di_pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
diaedg(double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.Triangulation
diag - Variable in class gov.nih.mipav.model.algorithms.Lmmin: diag is an array of length n.
diag - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D double array of length param conatiaing the diagonal elements of the diagonal matrix D if internalScaling is true.
diag - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D double array of length param conatiaing the diagonal elements of the diagonal matrix D if internalScaling is true.
diag() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Diag(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Make the matrix a diagonal matrix containing 'vec'.
DIAG - Variable in class gov.nih.mipav.model.algorithms.CVODES
DIAG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DIAGN4(double[], double[], double[], double[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], boolean[], int[], int[], int[], int, int, int, int[], int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
diagnosis - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
diagnostic1 - Variable in class gov.nih.mipav.model.algorithms.SVM
diagnostic1(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM
diagnosticFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Optional owned dataset.
diagnosticFnData - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
diagnosticFrequency - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver
DiagonalizeMatrix(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
DiagPivotThresh - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
diagRad - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 245 - 33 bytes Diagnostician/Radiologist.
DiagScale_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
dialog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2: The dialog for accessing GUI specific information, also set during scripting.
dialog - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
dialog - Variable in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
dialog - Variable in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
DialogDefaultsInterface - Interface in gov.nih.mipav.view: Simple interface for loading and saving default settings for dialogs.
DialogDTIColorDisplay - Class in gov.nih.mipav.view.dialogs
DialogDTIColorDisplay(boolean) - Constructor for class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Constructor
DialogDTIColorDisplay(ModelImage, ModelImage, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
DialogThree() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
DialogTwo() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
dialogWidthAdd - Static variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
diameter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
DiameterBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
diameterField - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
diameterNeurite - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
DIAPHANOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality diaphanography.
DIAPHANOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality diaphanography.
DIAPHY(int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DIB - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .dib.
dichroic - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter
dicom - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: flag indicates to read dicom matrix or not.
DICOM - gov.nih.mipav.model.algorithms.SIFT3D.im_format
DICOM - Static variable in class gov.nih.mipav.model.file.FileUtility: Digital Imaging and COmmunications in Medicine file type.
DICOM_AAbortRQ - Class in gov.nih.mipav.model.dicomcomm: DICOM Association Abort PDU Type.
DICOM_AAbortRQ() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: Creates a new DICOM_AAbortRQ object.
DICOM_AAssociateAC - Class in gov.nih.mipav.model.dicomcomm: Implements a DICOM Association Acceptance PDU Type.
DICOM_AAssociateAC() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Creates a new DICOM_AAssociateAC object.
DICOM_AAssociateRJ - Class in gov.nih.mipav.model.dicomcomm: DICOM Association Rejection.
DICOM_AAssociateRJ() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ: Creates a new DICOM_AAssociateRJ object.
DICOM_AAssociateRQ - Class in gov.nih.mipav.model.dicomcomm: DICOM Association Request PDU Type class.
DICOM_AAssociateRQ() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Creates a new DICOM_AAssociateRQ object.
DICOM_AReleaseRQ - Class in gov.nih.mipav.model.dicomcomm: DICOM Association Release Request.
DICOM_AReleaseRQ() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRQ: Creates a new DICOM_AReleaseRQ object.
DICOM_AReleaseRSP - Class in gov.nih.mipav.model.dicomcomm: DICOM Association Release Response.
DICOM_AReleaseRSP() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRSP: Creates a new DICOM_AReleaseRSP object.
DICOM_AsyncOpWindowSubItem - Class in gov.nih.mipav.model.dicomcomm: DICOM AsyncOpWindowSubItem PDU Item Type - Not supported but we read it in.
DICOM_AsyncOpWindowSubItem() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem: DICOM SCP/SCU Role Selection PDU Item Type.
DICOM_Comms - Class in gov.nih.mipav.model.dicomcomm: This class is used as a base class for all DICOM file and network I/O.
DICOM_Comms() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Constructor for DICOM network I/O class.
DICOM_Comms.ByteBuffer - Class in gov.nih.mipav.model.dicomcomm: Simple inner class to facilitate the memory allocation of of a byte buffer used in DICOM_Comms to support I/O.
DICOM_CommsLink - Class in gov.nih.mipav.model.dicomcomm: It is a bit odd since it both extends DICOM_Comms and has a DICOM_Comms object.
DICOM_CommsLink() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink
DICOM_Constants - Class in gov.nih.mipav.model.dicomcomm: Useful DICOM constants.
DICOM_Constants() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Constants
DICOM_CRequest - Class in gov.nih.mipav.model.dicomcomm: DIMSE-C service implementations.
DICOM_CRequest(int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Creates a new DICOM_CRequest object.
DICOM_CResponse - Class in gov.nih.mipav.model.dicomcomm: This is the base class for DIMSE-C response messages.
DICOM_CResponse(int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_CResponse: Creates a new DICOM_CResponse object.
DICOM_ELEMENT_PREFIX - Static variable in class gov.nih.mipav.model.file.FileMincHDF
DICOM_Exception - Exception in gov.nih.mipav.model.dicomcomm: Used to for DICOM communication error handling.
DICOM_Exception() - Constructor for exception gov.nih.mipav.model.dicomcomm.DICOM_Exception: Creates a new DICOM_Exception object.
DICOM_Exception(String) - Constructor for exception gov.nih.mipav.model.dicomcomm.DICOM_Exception: Creates a new DICOM_Exception object.
DICOM_FileIO - Class in gov.nih.mipav.model.dicomcomm: DICOM communication package reads the data from the socket and saves the data to a file stream.
DICOM_FileIO() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_FileIO
DICOM_GROUP_PREFIX - Static variable in class gov.nih.mipav.model.file.FileMincHDF
DICOM_MaximumSubLength - Class in gov.nih.mipav.model.dicomcomm: Simple class that implements a Maximum SubLength PDU type.
DICOM_MaximumSubLength() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength: Simple class that implements a Maximum SubLength PDU type.
DICOM_Move - Class in gov.nih.mipav.model.dicomcomm: This is the DICOM move class that defines functions to compose and send move requests to the server found in the .preferences file.
DICOM_Move() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Move: Creates a new DICOM_Move object.
DICOM_Object - Class in gov.nih.mipav.model.dicomcomm: The DICOM data object for storing DICOM tags (i.e. groups, elements).
DICOM_Object() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Object
DICOM_Object.GroupElements - Class in gov.nih.mipav.model.dicomcomm: Simple extension of the Hastable for use a GroupElements object.
DICOM_ObjectList - Class in gov.nih.mipav.model.dicomcomm: Vector of DICOM_Objects.
DICOM_ObjectList() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_ObjectList
DICOM_PDataTF - Class in gov.nih.mipav.model.dicomcomm: Used to exchange application information (i.e.
DICOM_PDataTF() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Creates a new DICOM_PDataTF object.
DICOM_PDUItemType - Class in gov.nih.mipav.model.dicomcomm: This class implements a 2 byte item length (DICOM_PDUType implements 4 byte item length.
DICOM_PDUItemType(byte) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType: Creates a new DICOM_PDUItemType object.
DICOM_PDUService - Class in gov.nih.mipav.model.dicomcomm: The Protocol Data Units (PDU) - PDU_Service class is a wrapper of all the lower level DICOM messaging classes.
DICOM_PDUService() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: PDU_Service constructor.
DICOM_PDUType - Class in gov.nih.mipav.model.dicomcomm: This an abstract class implements a 4 byte item length (DICOM_PDUItemType implements 2 byte item length.
DICOM_PDUType() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PDUType
DICOM_PDUTypeBase - Class in gov.nih.mipav.model.dicomcomm: DICOMPDUTypeBase abstract base class that is extended by DICOMPDUType and DICOMPDUItemType.
DICOM_PDUTypeBase() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase
DICOM_PresentationContext - Class in gov.nih.mipav.model.dicomcomm: DICOM Presentation Context PDU Item Type.
DICOM_PresentationContext() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Creates a new DICOM_PresentationContext object.
DICOM_PresentationContextAccept - Class in gov.nih.mipav.model.dicomcomm: DICOM Presentation Context Acceptance PDU Item Type.
DICOM_PresentationContextAccept() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept: Creates a new DICOM_PresentationContextAccept object.
DICOM_Query - Class in gov.nih.mipav.model.dicomcomm: This is the DICOM query class that defines functions to compose and send a patient root, patient level DICOM query request to the image file server located in NIH's Clinical Center.
DICOM_Query() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Query: DICOM_Query constructor.
DICOM_Query(ViewJFrameDICOMQuery, int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Query: DICOMQuery constructor.
DICOM_Receiver - Class in gov.nih.mipav.model.dicomcomm: This is the DICOM server class that hangs a listener on a given port for incoming image store requests from a remote DICOM client.
DICOM_Receiver() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Constructor that starts the thread.
DICOM_Receiver(String) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
DICOM_Receiver.RunnerThread - Class in gov.nih.mipav.model.dicomcomm: Thread manager for running the DICOM receiver.
DICOM_RTC - Class in gov.nih.mipav.model.dicomcomm: RTC - Run Time Class (although it is actually statically defined here) This allows access to information in the DICOM data dictionary.
DICOM_RTC() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_RTC
DICOM_RTC_Generator - Class in gov.nih.mipav.model.dicomcomm: This class generates the DICOM_RTC class file from the master DICOM tag list file (whose entries are obtained through calls to DicomDictionary).
DICOM_RTC_Generator() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator
DICOM_SCPSCURoleSelect - Class in gov.nih.mipav.model.dicomcomm: DICOM SCP/SCU Role Selection PDU Item Type.
DICOM_SCPSCURoleSelect() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect: DICOM SCP/SCU Role Selection PDU Item Type.
DICOM_Socket - Class in gov.nih.mipav.model.dicomcomm: Simple class to setup and the socket and streams.
DICOM_Socket() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Socket: DICOMSocket constructor.
DICOM_SOP - Class in gov.nih.mipav.model.dicomcomm: This is a base class for all SOP Class implementations.
DICOM_SOP() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_SOP
DICOM_StdRetrieve - Class in gov.nih.mipav.model.dicomcomm: DICOM Retrieve SOP Class.
DICOM_StdRetrieve(String) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: This implements a DICOM Retrieve SOP Class.
DICOM_StdStorage - Class in gov.nih.mipav.model.dicomcomm: A DICOM Storage SOP Class.
DICOM_StdStorage() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_StdStorage: Creates a new DICOM_StdStorage object.
DICOM_Store - Class in gov.nih.mipav.model.dicomcomm: This is the DICOM store class that defines functions to compose and send a store request to a DICOM image file archive such as the image file server located in NIH's Clinical Center.
DICOM_Store(String, String, ViewJFrameDICOMQuery) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Store: Creates a new DICOM_Store object.
DICOM_TransferSyntaxUtil - Class in gov.nih.mipav.model.dicomcomm: Simple utilities to convert transfer syntaxes to a different form.
DICOM_TransferSyntaxUtil() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil
DICOM_UID - Class in gov.nih.mipav.model.dicomcomm: DICOM_UID.
DICOM_UID(String) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_UID: Creates a new DICOM_UID object.
DICOM_UID(String, String) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_UID: Creates a new DICOM_UID object.
DICOM_UID(String, String, String) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_UID: Creates a new DICOM_UID object.
DICOM_UserInformation - Class in gov.nih.mipav.model.dicomcomm: DICOM User Information PDU Item Type (part 8 section 9.3).
DICOM_UserInformation() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: Constructs a DICOM user information object.
DICOM_Util - Class in gov.nih.mipav.model.dicomcomm: Static DICOM and general utilities to support DICOM interfacing.
DICOM_Util() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Util
DICOM_Verification - Class in gov.nih.mipav.model.dicomcomm: This is the DICOM verification class that defines functions to perform Verification to a DICOM image file archive such as the Kodak PACS image file server located in NIH's Clinical Center.
DICOM_Verification(String, ViewJFrameDICOMQuery) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Constructor.
DICOM_VR - Class in gov.nih.mipav.model.dicomcomm: DICOM Value Representation.
DICOM_VR() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_VR: Default constructor.
DICOM_VR(int, int, byte[], int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_VR: Creates a new DICOM_VR object.
DICOM_VR(int, int, int, int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_VR: Creates a new DICOM_VR object.
DICOM_VR(int, int, String, int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_VR: Creates a new DICOM_VR object.
dicomB0VolumeBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: browse button to locate the dicom b0 volume if doing registration
dicomB0VolumeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: label for dicom b0 volume if doing registration
dicomB0VolumePath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: path to dicom B0 for registration purposes
dicomB0VolumePath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
dicomB0VolumeTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: path to dicom b0 volume if doing registration
dicomCatcher - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
DICOMcatcher - Variable in class gov.nih.mipav.view.ViewUserInterface: Reference to the DICOM receiver that listens for DICOM formatted images sent by a DICOM server.
dicomConvertedTagTable - Variable in class gov.nih.mipav.model.file.FileMinc: Table of tags extracted from a dicom file info to be written to the minc file.
dicomDelta - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
DicomDictionary - Class in gov.nih.mipav.model.file: This class reads a text file that lists all the tags that the DICOM file reader will need to know about.
DicomDictionary() - Constructor for class gov.nih.mipav.model.file.DicomDictionary
DICOMDisplayer - Class in gov.nih.mipav.view: This class is simply a table that goes in the query GUI and displays progress and error messages.
DICOMDisplayer() - Constructor for class gov.nih.mipav.view.DICOMDisplayer: Creates a new table and table model and sets up the headers.
dicomEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
dicomFileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
dicomGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
dicomH - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Height read in from DICOM file; only use if imageHeight isn't defined.
dicomHighestX - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomHighestY - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomHighestZ - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomInfo - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: Array that holds the dicom tag info*
dicomInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
dicomInfo - Variable in class gov.nih.mipav.view.JPanelAnonymizeImage: all the tags that contain personal info:.
DicomInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
dicomInfoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Dicom options panel
dicomLowestX - Variable in class gov.nih.mipav.model.file.FileAfni: Dicom ordered bounding box in mm.
dicomLowestY - Variable in class gov.nih.mipav.model.file.FileAfni: Dicom ordered bounding box in mm.
dicomLowestZ - Variable in class gov.nih.mipav.model.file.FileAfni: Dicom ordered bounding box in mm.
dicomMarker(Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomMatrix - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: DOCUMENT ME!
dicomMatrix - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
dicomMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Dicom Matrix
dicomMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Dicom Matrix
DICOMMATRIX - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Dicom Matrix info Files (*.dicomMatrix).
dicomMatrixFile - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: dicom matrix file.
dicomMessageDisplayer - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Reference to the DICOM GUI for displaying message information.
dicomOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogOrder: Load image using dicom ordering (R-L, A-P, I-S)
dicomOrientation - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomOrigin - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomQuery - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
DICOMQueryFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: DICOM query frame for sending and receiving DICOM images.
DicomQueryListener() - Constructor for class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
DicomQueryListener() - Constructor for class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
dicomReceiverOnStart - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Dicom Receiver check box
dicomSliceSize - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomTable - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF: Hashtable to hold the tags for conversion to->from dicom and to-> mipav XML format
dicomTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
dicomTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
dicomTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
dicomTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
dicomTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
DicomTableModel(String[], int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.DicomTableModel
DicomTagIdentifier(FileDicomKey, FileDicomTagInfo) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier: Creates a new DicomTagIdentifier object.
DicomTagSelectorImpl - Interface in gov.nih.mipav.view.dialogs: Dialogs which implement this interface are eligible to use the JDialogDicomTagSelector for selecting DICOM tags within a given image file.
dicomToMincVarMap - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: Minc var equivalents to anonymizable Dicom tags.
dicomType() - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Returns whether enhancedMR, enhancedCT, or enhancedXA
DicomType - Interface in gov.nih.mipav.model.file
dicomW - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Width read in from DICOM file; only use if imageWidth isn't defined.
dicomXDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomYDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dicomZDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
didSucceed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Returns whether or not a minimum was found.
didSucceed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns whether or not a minimum was found.
diff(float[], float[], float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation
diffBinomial(int) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
DIFFERENCE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
differenceButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
differentButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
DifferentiatePolynomial(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
differentSpheresButton - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
diffGaussians(double[]) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.diffGaussians
diffil_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
diffsum - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
diffuse - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: DOCUMENT ME!
diffuse - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: DOCUMENT ME!
DIFFUSE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
diffuseButton - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Diffuse color button for vertex material.
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: DOCUMENT ME!
diffuseColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
diffusion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Diffusion constant in um*um/sec.
diffusion - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
diffusion - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusion - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
DIFFUSION - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
diffusionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: DOCUMENT ME!
diffusionAnisotropyType - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
diffusionAnisotropyType - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionAnisotropyTypeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionAnisotropyTypePos - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionBFactor - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
diffusionBFactor - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionBValueNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
diffusionBValueNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionBValueNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionBValueNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
diffusionExperimentsPerDirection - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionGradientAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionGradientDuration - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionGradientSeparation - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionGradientSwitchingScheme - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionMeasurementMode - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionModuleDuration - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionModuleEchoDelay - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusionPreparation - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
diffusitivityDenom - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
diffusivity(float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Returns the weighting for values used in computing new (diffused) pixel values.
diffVolume - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: The volume difference btw the tumor surface and the buring sphere packings.
diffVolumeLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Volume difference label for the current treatment.
diffVolumeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Volume difference text.
diffVoxels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Volume difference in voxels for the tumor surface and burning sphere, ellipsoid packings.
digamma(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
DIGITAL_RADIOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality digital radiography.
DIGITAL_RADIOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality digital radiography.
digitalGain - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
digitalZoomRatio - Variable in class gov.nih.mipav.model.file.FileSVS
digitalZoomRatio - Variable in class gov.nih.mipav.model.file.FileTiff
DijkstraCostItem - Class in gov.nih.mipav.model.structures: Contains information for a point used in the the Dijkstra minimum cost path algorithm.
DijkstraCostItem(int) - Constructor for class gov.nih.mipav.model.structures.DijkstraCostItem: Setup to associate this instance with a particular sample in the volume.
DijkstraMinCostPath - Class in gov.nih.mipav.view.renderer.flythroughview: Implementation of the Dijkstra minimum cost path algorithm through a binary volume.
DijkstraMinCostPath(ModelImage3DLayout, short[], int, int, float[], int, int) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Compute the minimum cost path through the 26-connected specified volume of samples, only considering those samples which are marked with the specified mask and starting at the specified sample.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Dilates an image using the indicated kernel and the indicated number of executions.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Dilates an image using the indicated kernel and the indicated number of executions.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Dilates an image using the indicated kernel and the indicated number of iterations.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Dilates a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Dilates a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
dilate(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Dilates a boolean, unsigned byte, or unsigned short image using the indicated kernel and the indicated number of iterations.
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
DILATE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
dilate2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Dilates an image slice using the indicated kernel and the indicated number of executions.
dilate2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Dilates a boolean, unsigned byte or unsigned short image slice using the indicated kernel and the indicated number of executions.
dilateAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
dilateAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
dilateAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
dilateDimType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
dilateImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: dilation.
dilateObject(BitSet, int, int, int, BitSet, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: dilate binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
dilation - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: default dilation:.
dim - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
dim - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdhyperrect
dim - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdtree
dim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: The number of dimensions (2D or 3D).
dim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: The number of dimensions (2D or 3D).
dim - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Sep_FIR_filter
dim - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tps
dim - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
dim - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Number of available dimension.
dim - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Used for construction of the preview.
dim - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Number of dimensions in an image e.g 2D, 3D
dim - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Number of dimensions in an image e.g 2D, 3D
dim - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
dim - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The histogram image dimension.
dim - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
dim - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The histogram image dimension.
dim - Variable in class gov.nih.mipav.view.ViewJSlider: Holds the old dimension to minimize redrawing of slider table
dim() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Dim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
DIM - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
DIM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
DIM - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: The number of dimensions in the image.
DIM - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
DIM - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
DIM - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Number of dimensions in match image.
DIM - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
dim_un0 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unused.
dim_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unused.
dim_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
dimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
dimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
dimArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
dimArray - Variable in class gov.nih.mipav.model.file.FileInfoMinc: DOCUMENT ME!
dimB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: private double dimA[], resA[];.
dimB - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimension - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
dimension - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
dimension - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc: < Weight threshold.
dimension - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < SVM solver type.
dimension - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset: < Number of wrapped data.
DIMENSION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
DIMENSION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
dimensionM - Variable in class gov.nih.mipav.model.file.FileInfoLSM
dimensionM - Variable in class gov.nih.mipav.model.file.FileLSM
dimensionNode - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The dimension tree node that holds xspace, yspace, and (optionally) zspace nodes
dimensionNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
dimensionOrder - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data: Attributes.
dimensionP - Variable in class gov.nih.mipav.model.file.FileInfoLSM
dimensionP - Variable in class gov.nih.mipav.model.file.FileLSM
dimensions - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
Dimensions() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Dimensions() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Dimensions() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
dimensionsOK() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
dimensionsReserved - Variable in class gov.nih.mipav.model.file.FileLSM
dimensionsSanityCheck() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Method checks the dimensions parameters entered by the user.
dimExtents - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Bounds of the image where.
dimExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
dimGreenPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
dimGreenPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
dimGreenSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
dimGreenSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
dimGreenTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
dimGreenTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
dimH - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimI - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimid - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
dimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Dimension sizes.
dimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Dimension sizes.
dimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
dimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
dimLengths - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: length of function in pixel in each dim.
dimLengths - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: length of function in pixel in each dim.
dimlenx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
dimleny - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
dimlenz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
dimLoc - Variable in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode
dimM - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimOrder - Variable in class gov.nih.mipav.model.file.FileMincHDF: The ordering of the dimensions.
dimOriginalExtents - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Bounds of the image where.
dimPowerOfTwo(int) - Static method in class gov.nih.mipav.util.MipavMath: Calculate the dimension value to power of 2.
dimPowerOfTwo(int) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Convert the dimensions to Power of 2.
dimR - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimReorderIndexes - Variable in class gov.nih.mipav.model.file.FileMincHDF
dimResolutions - Variable in class gov.nih.mipav.model.file.FileInfoBase: Pixel or voxel resolutions for each dimension - default = 1.0.
dims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Dimensionality of the data.
dims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
dims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
dims - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
dims - Variable in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
dims - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
dims - Variable in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
dims - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
dimS - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimStrings - Variable in class gov.nih.mipav.model.file.FileMincHDF
dimStringsReordered - Variable in class gov.nih.mipav.model.file.FileMincHDF
dimsub(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
dimsub(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
dimTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
dimV - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dimX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
dimX() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
dimY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
dimY() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
dimZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
dimZ() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
dinf_norm_error(int, SuperLU.SuperMatrix, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dinvmap(double[][], double[][], double[][], double[], double[][], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
dinvr(int[], double[], double[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
diognostician - Variable in class gov.nih.mipav.model.file.FileGESigna4X
diognostician - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
diplayTract(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Constructs the Fiber Bundle Tracts from the dtiImage and the eigenImage parameters.
diplayTract(int, int, int, int, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
dipli - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
dir - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
dir - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdnode
dir - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
dir - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
DIR_LABEL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveTab: The (optional) label to use for the directory in which to save the tab contents.
DIR_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
dircnt_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.dircnt_t
dirCosines - Variable in class gov.nih.mipav.model.file.FileMincHDF: direction cosines matrix
direct - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
DirectBitsRect - Static variable in class gov.nih.mipav.model.file.FileLIFF
direction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
direction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
direction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
direction - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this is the gradient matrix that is populated when reading the gradient file
direction - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
direction - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
direction - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
direction - Variable in class gov.nih.mipav.model.structures.TableSorter.Directive: DOCUMENT ME!
direction - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
direction - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Java3D supports limiting the vertices to be processed by the call setValidVertexCount(int).
direction - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: DOCUMENT ME!
direction - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
direction - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: the light's direction in the world.
direction - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: DOCUMENT ME!
direction - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: image x, y, z orientation.
direction - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Surface direction
direction() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
direction_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
directional_derivative - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State
directionalDerivatives(double, double, double, double, double, double, double, double, double, double, double, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
directionalityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
directionalRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Directional light radio botton.
directionalRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Directional light radio botton.
directionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
DirectionInfinityNorm() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
directionNeeded - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
directionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
directionsOptmizationWeight - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
Directive(int, int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Directive: Creates a new Directive object.
directoriesOnly - Variable in class gov.nih.mipav.view.ViewFileTreeNode: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
directory - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: directory of where dicom tags are save to *
directory - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
directory - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text field for the directory of a file being attached from the user's computer
directory - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: File name and directory.
directory - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: File name and directory.
directory - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
directory - Variable in class gov.nih.mipav.view.ViewDirectoryChooser: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.ViewFileChooserBase: String locations
directory - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
directory - Variable in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Path to the file (no file name).
Directory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Directory
DIRECTORY - gov.nih.mipav.model.algorithms.SIFT3D.im_format
directoryInput - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
directoryInput - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
directoryMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
directoryMp - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
directoryOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
directoryOutput - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
directoryPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
directoryPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
DirectoryTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest
DirectoryTiffHandler(MetadataExtractor.Metadata, MetadataExtractor.Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
directoryTimes - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
directoryTissue - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
directoryTissue - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
directoryTree - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Actual things we can see...
directoryTree - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
directoryVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
directoryVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
directoryVOI2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
directoryWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
directoryWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
directoryWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
directoryWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
directoryWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
directoryWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
directoryWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
directoryWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
directScaledSwitching - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
dirField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
dirichlet(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
dirichlet_fit(double[], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_fit_m(double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_fit_newton(double[], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_fit_s(double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_fit_simple(double[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_logProb(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_logProb_fast(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_moment_match(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_sample(double[][], int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichlet_sample_col(double[], int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
dirichletRnd(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
dirichletRnd(double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
dirichletTest() - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
dirInfo - Variable in class gov.nih.mipav.model.file.FileDicom: Holds sequence of files described in DICOMDIR.
dirInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
dirPath - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Directory to recursively operate in.
dirty - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
dirty - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
disable_all_safety_checks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
disable6Planes() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable the 6 clipping planes.
disable6Planes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Disable the 6 clipping planes.
disableCamera() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Set the captureFrame to null.
disableCamera() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Set the captureFrame to null.
disableClipA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable the arbitrary clipping.
disableClipA() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Disable the arbitrary clipping.
disableClipping() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Diable all the six clipping planes at a time.
disableClipping() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Diable all the six clipping planes at a time.
disableClipPlanes() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable clipping planes when dialog window closed.
disableClipPlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Disable clipping planes when dialog window closed.
disableClipPlanesArbi() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable arbitrary clipping planes.
disableClipPlanesArbi() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Disable arbitrary clipping planes.
disableDebugOutput() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
disableResampleMatrixFileButton() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
disableSlices() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: When 3D texture volume render is invoked, disable all the slices and bounding frame boxes.
disableSliders - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
disableSlidersB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
disableSlidersG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
disableSlidersR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
disableStaticClipping() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable the eye clipping plane.
disableStaticInvClipping() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Disable the eye inverse clipping plane.
disableTargetPointPicking() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Disable target point for the RFA probe from within the plane renderer.
discarded_bytes - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
disconnect() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: DOCUMENT ME!
disconnect() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
DISCRETE_BOUNDARY_VALUE - Variable in class gov.nih.mipav.model.algorithms.LsqFit
DISCRETE_BOUNDARY_VALUE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
DISCRETE_INTEGRAL - Variable in class gov.nih.mipav.model.algorithms.LsqFit
DISCRETE_INTEGRAL - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
discrete_wavelet(PyWavelets.WAVELET_NAME, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
DiscreteCosineTransform - Class in gov.nih.mipav.model.algorithms: This routines except the SLOW routines are ported from FORTRAN to Java from: ALGORITHM 749, COLLECTED ALGORITHMS FROM ACM.
DiscreteCosineTransform() - Constructor for class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
DiscreteCosineTransform(boolean, int[], int, boolean, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
DiscreteCosineTransform(ModelImage, ModelImage, ModelImage, int, int, double, double, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
discreteRnd(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
DiscreteSineTransform - Class in gov.nih.mipav.model.algorithms
DiscreteSineTransform() - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform
DiscreteSineTransform(boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform
DiscreteSineTransform(ModelImage, ModelImage, ModelImage, boolean, int, int, double, double, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform
DiscreteSineTransform.cdft_arg_t - Class in gov.nih.mipav.model.algorithms
DiscreteSineTransform.cftrec1_th - Class in gov.nih.mipav.model.algorithms
DiscreteSineTransform.cftrec2_th - Class in gov.nih.mipav.model.algorithms
DiscreteTransformType(int) - Constructor for enum gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType
DiscreteWavelet() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
DiscretInteg() - Constructor for class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
diskAccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
diskeval(SchwarzChristoffelMapping.scmap, double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
diskevaldiff(SchwarzChristoffelMapping.scmap, double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
diskevalinv(double[][], SchwarzChristoffelMapping.scmap, double[][], double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
diskid - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 6 - (internal use) Disk ID.
diskmap(double[][], double[], double, double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
diskplot(SchwarzChristoffelMapping.scmap, double[], double[], int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
disp_freq - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
dispatchSavedEvent(EventObject) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Dispatches event to appropriate object.
dispatchSavedEvent(EventObject) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dispatches event to appropriate object.
dispatchSavedEvent(EventObject) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dispatches event to appropriate object.
Displace(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Displaces the shape around it's center of gravity using a displacement vector.
DisplacementSets(Vector<CDVector>, Vector<CDVector>, Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
display - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
display - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
display - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
display - Variable in class gov.nih.mipav.model.algorithms.NMSimplex
display - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Should the surface be displayed.
display - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink: Display VOI with image.
display - Variable in class gov.nih.mipav.model.structures.VOIBase: displays the voi in the volume renderer:
display - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
display - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Flag that indicates whether to put capture in a new frame on screen.
display() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Set the display to true and call GLCanvas.display;
display(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase: Turns the display setting on/off for the VolumeVOI displayed in the volume renderer.
display(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation: Turns the display setting on/off for the VolumeVOI displayed in the volume renderer.
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
display(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
display_info(String, int, NonnegativeMatrixFactorization.info, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
display_stop_reason(NonnegativeMatrixFactorization.opt, String, String, boolean) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
display3DWindowOnly() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
displayAboutInfo(FileInfoBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: makes the display frame. builds the layout.
displayAboutInfo(FileInfoImageXML) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: makes the display frame. builds the layout.
displayAboutInfo(ModelImage, FileInfoDicom, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: This method displays all the valid variables, that is, the ones that are no longer equal to their default values.
displayAboutInfo(ModelImage, FileInfoMincHDF, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: This method displays all the valid variables, that is, the ones that are no longer equal to their default values.
displayAboutInfo(JDialogBase) - Method in class gov.nih.mipav.model.file.FileInfoBase: Displays the file information.
displayAboutInfo(JDialogBase, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Displays all information about an image.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoAfni: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoAvi: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBase: Abstract method which is used by the extending class to display information about the window.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBFLOAT: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBioRad: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBMP: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoCheshire: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoCOR: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoCZI: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Super requires displayAboutInfo to be defined display of this class is held by JDialogFileInfoDICOM.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoDM3: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoFits: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoICS: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoInterfile: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoJP2: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoJSON: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoLattice: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoLIFF: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoLSM: displayAboutInfo - displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMedVision: displayAboutInfo - displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMetaImage: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMGH: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Displays important information about the image.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Displays important information about the image.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMRC: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoNRRD: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoOME: DOCUMENT ME!
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoPARREC
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoPGM: displayAboutInfo - displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoPPM: displayAboutInfo - displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoRaw: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSPAR
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSPM: displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSTK: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSVS: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoTiff: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoTMG: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoVista: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoXML: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoZVI: Displays the file information.
displayAboutInfo(JDialogBase, TransMatrix, int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC
displayAClipPlanePts() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Display the abitrary clipping plane corner points.
displayAcpc() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: For debug: return the transform as a 4x4 matrix.
displayAcpcInverse() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: For debug: return the transform inverse as a 4x4 matrix.
displayADC - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayAdvancedMaterialOptions(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Display the Surface Material dialog for the selected surfaces.
displayAdvancedMaterialOptions(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: For each file in the selected list, launch the AdvancedMaterialOptions dialog:
displayAll - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
displayAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Causes redisplay of all components.
displayAndAsk - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
displayAndAsk - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
displayAnnotation(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
displayAnnotationSpheres() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
DisplayArb() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Return true if the arbitrary clip plane is current being displayed.
DisplayArb(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Turns displaying the arbitrary clip plane on/off.
displayArbitraryClipPlane(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Displays the arbitrary clip plane position.
displayAspectTime - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
displayAspectTime - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
displayAspectX - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
displayAspectX - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
displayAspectY - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
displayAspectY - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
displayAspectZ - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
displayAspectZ - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
displayAxes(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Sets whether axes (either anatomical or x,y,z if no orientation info) are shown or not in one of the corners of the component.
displayBoundingBox(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called from JPanelDisplay.
displayBreakDownInfo(Object[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
displayBuffer - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
displayCameraParams(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Display camera related parameters
displayChanged(GLAutoDrawable, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
displayChanged(GLAutoDrawable, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
displayChanged(GLAutoDrawable, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
displayChannel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
displayCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Button for selecting display in window.
displayCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
displayCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
displayClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
displayClip(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
displayClipPlane(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Called from JPanelClip.
displayClipPlane(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called from JPanelClip.
displayClipPlane(int, boolean, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called from JPanelClip.
displayColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayColorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
displayContours - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
displayContours2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
displayConvexityColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: toggle between display of mean curvature-based colors and average convexity-based colors.
displayConvexityColors() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: toggle between display of mean curvature-based colors and average convexity-based colors.
displayCorticalAnalysis() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Resets the Mesh Display, when the file is reloaded:
displayCorticalAnalysis(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
displayCurvatureColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: toggle between display of mean curvature-based colors and average convexity-based colors.
displayCurvatureColors() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: toggle between display of mean curvature-based colors and average convexity-based colors.
displayDeformationField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: output image display options:
displayDTIInfo_JDialogFileInfo(JDialogFileInfo) - Method in class gov.nih.mipav.model.file.FileInfoPARREC
displayDTIInfo_JDialogText(JDialogText, int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC
displayedNeurite(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
displayEPIResult - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
displayError(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Displays an error in a frame.
displayError(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Displays an error in a frame.
displayError(String) - Static method in class gov.nih.mipav.view.MipavUtil: Pops up a message dialog to display an error.
displayEValue - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayEVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayExit - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Check boxes enable the user to save and display output images:
DisplayEye(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Turns displaying the eye clip plane on/off.
DisplayEyeInv(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Turns displaying the inverse-eye clip plane on/off.
displayFA - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayFilters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
displayFuzzy - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
displayFuzzy - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
DisplayGlyphs(ModelImage, Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Display a fiber bundle tract with a Glyph.
displayGraph - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram
displayGraph - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
displayGroupLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
displayGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Display options panel:
displayHelp() - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
displayHistogram - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Whether images are updated in real-time based on histogram changes.
displayImageAsTexture(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Displays the selected surfaces with the ModelImage as a 3D texture map on the surface triangle mesh.
displayImagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Gives user choices for displaying complex images.
displayImages() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
displayImages() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1: This method is used in both the conventional and HIFI case to display result images
displayImages() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
displayInfo(String) - Static method in class gov.nih.mipav.view.MipavUtil: Pops up a message dialog to display information.
displayInNewFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
displayInterpolatedContours - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
displayLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
displayLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
displayLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
displayLattice - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
displayLatticeLabels - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: result image in new frame
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Flag indicating if a new image is to be generated.
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Flag indicating if a new image is to be generated.
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: result image in new frame
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Flag indicating if a new image is to be generated or if the source image is to be replaced
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: DOCUMENT ME!
displayLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
displayLogMag - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: The check box to indicate whether images are displayed using the log of their magnitude
displayLUT - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Whether to auto-display lut associated with file.
displayMasksButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: display masks toggle button.
DisplayMatrixSize - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
displayMidline - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
displayMode - Variable in class gov.nih.mipav.model.structures.VOI: Indicates if the VOI should be shown as a boundary or a solid.
displayMode - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Indicates which image is to be acted upon when two images are displayed.
displayMode - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Indicates which image is to be acted upon when two images are displayed.
displayMode - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Indicates which image is to be acted upon when two images are displayed.
displayMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
displayMode - Variable in class gov.nih.mipav.view.ViewJFrameBase: Indicates which image is to be acted upon when two images are displayed.
displayModeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
displayName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
displayNeurite - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
displayNeurite(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
displayNode(Node, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Toggle display of the scene-graphe node on/off.
displayNodes(DefaultMutableTreeNode, ViewTableModel) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Recursively parse and display (to JDialogText) the nodes
displayNumbers(boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: In 4D whether to show numbers for each z slice.
displayNumbers(boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: In 4D whether to show numbers for each z slice.
displayObjectParams(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Display object related parameters
displayOptions - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
DisplayOptions(Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: Creates a new DisplayOptions object.
displayOrientationCube(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called from JPanelDisplay.
displayOutput - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
displayPaintButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
displayPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The panels that make up this Dialog
displayPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: MIPAV global options private JPanel globalChangesPanel;.
displayPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
displayPCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
displayPixelFormat(int) - Method in class gov.nih.mipav.model.file.FileZVI
displayPlane() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Switch to displaying the plane:
displayPlane() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Switch to displaying the plane:
displayPrimaryInfo(JDialogText, TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBase: Method called by many extending classes to display basic information in the dialog common to all images.
displayProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: display progress bar or not.
displayProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: display progress bar or not.
displayProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: display progress bar or not.
displayQueryResults(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Displays the query results.
displayRA - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayRangeOfSlicesDialog - Variable in class gov.nih.mipav.model.file.FileIO
DisplayRayCast - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
displayRegisteredB0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
displayReportForm() - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Initializes GUI.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitExponential: Display results of displaying exponential fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Display results of displaying exponential fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Display results of displaying exponential fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitLine: Display results of displaying linear fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Display results of displaying lorentz fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential: Display results of displaying exponential fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh: Display results of displaying linear fitting parameters.
displayResults() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Displays results in a panel with relevant parameters.
displaySClipPlanePts() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Display the static(eye) clipping plane corner points.
displaySeam - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
displaySelected(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
displaySelectedLabel(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
displaySlices(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
displaySlices(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
displaySlices(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
displaySlices(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
displaySlices(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
DisplaySlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
displaySlicesRadical(ModelImage, ModelImage, ModelImage, ModelImage, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
displaySlicesRadical(ModelImage, ModelImage, ModelImage, ModelImage, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
displaySlicesRadical(ModelImage, ModelImage, ModelImage, ModelImage, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
displaySlicesRadical(ModelImage, ModelImage, ModelImage, ModelImage, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
displaySlicesRadical(ModelImage, ModelImage, ModelImage, ModelImage, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
displaySphere() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Switch to displaying the sphere:
displaySphere() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Switch to displaying the sphere:
displaySplash - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
displayStereo(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: For each file in the selected list, launch the stereo viewer:
displaySurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
displaySurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
displaySurface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
displaySurface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
displaySurface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Toggle surface display on/off.
DisplaySurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
displayTable - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: The visible JTable for slice/volume reordering
displayTensor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
displayTlrc(int) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Unknown use and currently not being referenced within MIPAV
displayTotalDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
displayTrace - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
DisplayTract(Renderer, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Displays a polyline fiber bundle tract with the given shader attached.
displayTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
displayTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
displayTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
DisplayTubes(ModelImage, Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Displays a tube fiber bundle tract with the given shader attached.
displayType - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Data type.
displayUserInterfacePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
displayView() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
displayVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
displayVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Toggle surface display on/off.
displayVolumeRaycast(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Toggle volume display on/off.
displayVolumeSlices(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Toggle 3D Slice display on/off.
displayVR - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
displayWarning(String) - Static method in class gov.nih.mipav.view.MipavUtil: Pops up a message dialog to display a warning.
displayXHairs(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Sets whether or not crosshairs are shown in the images.
DisposalMethod() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
dispose() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
dispose() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
dispose() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
dispose() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
dispose() - Method in class gov.nih.mipav.model.file.FileIO
dispose() - Method in class gov.nih.mipav.model.structures.HQueue: dispose - cleans up memory.
dispose() - Method in class gov.nih.mipav.model.structures.VOI
dispose() - Method in class gov.nih.mipav.model.structures.VOIBase: Deletes local data members.
dispose() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
dispose() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: dispose - Removes member variables.
dispose() - Method in class gov.nih.mipav.view.JPanelProgressBar: DOCUMENT ME!
dispose() - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
dispose() - Method in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Called to free up object memory for member data.
dispose() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: Disposes of image memory and associated objects.
dispose() - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Called to free up resources.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Sets all variables to null.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Override called when window is closed.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: Called to cleanup any dynamically allocated data members.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Deletes all member variables, clean memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Deletes all local data members.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Removes this object from the ModelImage imageDisplayListener list.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Deletes all local data members.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Clean up memory of this class.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Clean up memory of this class.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Deletes all member variables, clean memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: Clean memory.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Disposes of image memory and associated objects.
dispose() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: Disposes of image memory and associated objects.
dispose() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Abstract method to force extended classes to implement a disposal method to clean up memory.
dispose() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB: Sets variables to null and gets rid of frame.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDelaunay: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Deletes any reference shape, mesh and mask image.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity: Dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: dispose memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: Dispose memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList: Dispose the local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh: Dispose the local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh: Dispose the local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh: Dispose the local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Deletes all local data members.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Deletes all member variables, clean memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineString
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors2
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Deletes all member variables, clean memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Dispose local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Dispose local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect: Delete memory
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages: memory cleanup.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Cleans up local memory.
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Deletes this LatticeModel
dispose() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
dispose() - Method in class gov.nih.mipav.view.Rubberband: Sets parent component image to null.
dispose() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Sets variables to null and gets rid of frame.
dispose() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Abstract method to force extended classes to implement a disposal method to clean up memory.
dispose() - Method in class gov.nih.mipav.view.ViewJComponentLUT: Sets the variables to null and gets rid of the frame.
dispose() - Method in class gov.nih.mipav.view.ViewJComponentLUTTable: Sets the variables to null and gets rid of the frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Disposes of components and frame.
dispose() - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
dispose() - Method in class gov.nih.mipav.view.VolumePositionFrame: DOCUMENT ME!
dispose(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Dispose memory.
dispose(boolean) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Dispose memory.
dispose(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Dispose memory.
dispose(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Sets all variables to null, disposes, and garbage collects if parameter is set.
dispose(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Dispose memory.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Sets all variables to null, disposes, and garbage collects.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Sets all variables to null, disposes, and garbage collects.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Sets all variables to null, disposes, and garbage collects.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Sets all variables to null, disposes, and garbage collects.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Sets all variables to null, disposes, and garbage collects.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Sets buffers to null.
dispose(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Sets all variables to null, disposes, and garbage collects.
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: memory cleanup.
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Clean memory.
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
dispose(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Delete local memory.
dispose(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Delete local memory.
disposeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Flag indicates if this object should dispose the input image.
disposeImage - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: whether or not to dispose of imageA and imageB true unless ViewJFrameAnimate was passed an unscaled 3D image
disposeImage - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
disposeImageDependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
disposeImageIndependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Sets everything to null and prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Sets everything to null and prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Sets class global array variables to null and calls the garbage collector.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Sets class global array variables to null and calls the garbage collector.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Sets everything to null and prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Sets everything to null and prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Dispose of local variables.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Sets everything to null and prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: Prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Clean up memory.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Clean up memory.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: Prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: Prepares this class for destruction.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Dispose of local variables that may be taking up lots of room.
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: remove local memory
disposeLocal() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Local cleanup.
disposeLocal() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.model.structures.ModelImage: Unregisters image and disposes of image memory and associated objects.
disposeLocal() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Dispose of memory and call the garbage collector.
disposeLocal() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.JFrameHistogram: Removes this from the image display listeners.
disposeLocal() - Method in class gov.nih.mipav.view.JPanelHistogram: Removes and deletes local memory.
disposeLocal() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Clear memory and garbage collection.
disposeLocal() - Method in class gov.nih.mipav.view.PatientSlice: Default dispose.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Clear memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Clear memory and garbage collection.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Clear memory and garbage collection.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Sets all variables to null, disposes, and garbage collects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Sets all variables to null, disposes, and garbage collects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Sets variables to null and gets rid of frame.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Sets all variables to null, disposes.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Disposes of image memory and associated objects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Clean up memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: Deallocate memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: Deallocate memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Disposes of image memory and associated objects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Still needs more work Matt.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Still needs more work Matt.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Clear memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Disposes of components and frame.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Memory cleanup.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Clean up local memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend: Dispose the local memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Sets all variables to null, disposes, and garbage collects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Clear memory and garbage collection.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Sets all variables to null, disposes, and garbage collects.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Dispose the local memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Removes this object from the ModelImage imageDisplayListener list.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D: Dispose the local memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: dispose memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: dispose memory
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Clean memory.
disposeLocal() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Memory cleanup.
disposeLocal() - Method in class gov.nih.mipav.view.ViewJComponentBase: Clean up some resources!
disposeLocal() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Should be called when window is closing to perform cleanup.
disposeLocal() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Should be called when window is closing to perform cleanup.
disposeLocal() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Should be called when window is closing to perform cleanup.
disposeLocal() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Deletes local memory.
disposeLocal() - Method in class gov.nih.mipav.view.WindowLevel: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Unregisters image and disposes of image memory and associated objects.
disposeLocal(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Nulls the data fields so that memory can be recovered.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Clear memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Clear memory and garbage collection.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Clear memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Dispose memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Dispose the global variables.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Dispose memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Dispose global variables.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Dispose global variables.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Clean memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: Sets all variables to null, disposes, and garbage collects.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Dispose memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Dispose memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
disposeLocal(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Dispose memory.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Deprecated.
Old method that does not match up with signature from VJCBase.
disposeLocal(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Sets all variables to null, disposes, and garbage collects (sometimes).
disposeLocal(boolean) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Dispose of the implementing class.
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
disposeMemory() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
disposeProgressBar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Disposes of progress bar.
disposeRenderers() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
disposeShared(VolumeImage, VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
disposeSlices(OrderedGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Remove all children (geometries) of the specified ordered group node.
disposeThisImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Disposes of image memory and LUT Frame.
dispString - Variable in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
dissimilarity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate dissimilarity Sum over i,j of Probability(i,j) * Absolute value(i-j).
dissimilarity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate dissimilarity Sum over i,j of Probability(i,j) * Absolute value(i-j).
dissimilarity - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
dissimilarity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
dissimilarityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
dissimilarityCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
dist - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line
dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line
dist() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
dist(double[], double[][][], int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
dist(delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
dist(Vector3f, Vector3f, float[]) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist(Vector3f, Vector3f, float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Finds the distance between two points based on resolution.
DIST - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
DIST(int, int, double[][], double[][], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dist_ant - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_funct - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
dist_inf - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_lef - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_med - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_pos - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_rig - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dist_sq - Variable in class gov.nih.mipav.model.algorithms.KDTree.res_node
dist_sq(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.KDTree
dist_sup - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
distance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityItem: DOCUMENT ME!
distance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexItem: DOCUMENT ME!
distance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensity
distance - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch
distance(double, double, double, double) - Static method in class gov.nih.mipav.util.MipavMath: Finds the distance between two 2D points.
distance(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Calculates the euclidian distance between two points.
distance(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Calculates the euclidian distance between two points.
distance(float, float, float, float) - Static method in class gov.nih.mipav.util.MipavMath: Finds the distance between two points.
distance(float, float, float, float, float, float) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the actual distance between two 3D points.
distance(float, float, float, float, float, float, float[]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the actual distance between two 3D points using voxel resolutions.
distance(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Calculates the distance between two points.
distance(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Calculates the euclidian distance between two points.
distance(int, int, int, int) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the 2D euclidian distance between two points.
distance(int, int, int, int) - Static method in class gov.nih.mipav.view.Rubberband: Calculates the 2D euclidian distance between two points.
distance(int, int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Tests the distance between two points.
distance(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
distance(Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
distance(Point3f, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Calculate the Euclidean distance between two points.
distance(Vector3f, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
distance(Vector3f, Vector3f) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the 3D euclidian distance between two points.
distance(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Calculate the Euclidean distance between two points.
distance(Vector3f, Vector3f) - Static method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Calculates the 3D euclidian distance between two points.
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the 3D euclidian distance between two points.
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
distance(Vector3f, Vector3f, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
distance(Vector3f, Vector3f, float[][]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the 3D euclidian distance between two points.
Distance(Point3D, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
Distance(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
distance_first - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
DISTANCE_MAP_FOR_SHAPE_INTERPOLATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
DISTANCE_MAP_FOR_SHAPE_INTERPOLATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
DISTANCE_MAP_FOR_SHAPE_INTERPOLATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
DISTANCE_MAP_FOR_SHAPE_INTERPOLATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
distance_S - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
distance_Sig3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
distance_SubSig3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
distanceArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
distanceCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
distanceDecline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
distanceDecline - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
distanceDeclineText - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
distanceFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
distanceFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
distanceFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
distanceFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
distanceFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
distanceFilterAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
distanceFilterCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
distanceFilterPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
distanceFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Whether or not to calculate largest distance (only 3D), true by default
DistanceFromIsocenter - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
distanceGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
distanceGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
distanceImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
distanceIndexComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexComparator
distanceIndexItem(double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexItem: Creates a new positionWieghtItem object.
DistanceIntensity(double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensity
distanceIntensityComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityComparator
DistanceIntensityComparator() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensityComparator
distanceIntensityItem(double, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityItem: Creates a new distanceIntensityItem object.
distanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
distanceMap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
distanceMap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
distanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Euclidian distance map.
distanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Generates a Euclidian distance map.
distanceMap1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: distance map 1
distanceMap2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: distance map 2
distanceMapAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
distanceMapAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: DOCUMENT ME!
distanceMapAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: DOCUMENT ME!
distanceMapAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
distanceMapAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: DOCUMENT ME!
distanceMapAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: DOCUMENT ME!
distanceMapForShapeInterpolation(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
distanceMapForShapeInterpolation(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
distanceMeasure - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
distanceMeasure - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
distancems2(float[], int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: This function performs a truncated FMV cycle.
distancems3(float[], int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
distancePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
distancePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
DistanceS(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
distanceString - Variable in class gov.nih.mipav.model.structures.VOIPoint: Distance between segments shown only for active point in polyline_slices
distanceString() - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns the distance string.
distanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
distanceToVOI(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the smallest distance from the input point to this contour.
distanceTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Chamfer matching: Distance transformation coverts binary surface image into grey-level image where each pixel's intensity = distance to nearest surface pixel.
distanceTransform25D() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Chamfer matching: Distance transformation coverts binary surface image into grey-level image where each pixel's intensity = distance to nearest surface pixel.
distBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
distBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
DistEuclidianAssBorder(CAAMShape, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Wrapper to calculate the point to curve error.
DistEuclidianAssBorder(CAAMShape, CAAMShape, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates the point to curve error between two shapes.
DistEuclidianAssBorder(CDVector, CDVector, CDVector, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates the point to curve error between two shapes.
DistEuclidianPoints(CAAMShape, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates the point to point error between two shapes.
DistEuclidianPoints(CDVector, CDVector, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates the point to point error between two shapes.
distL1(AlgorithmMeanShiftClustering.famsPoint, AlgorithmMeanShiftClustering.famsPoint) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
distL1Data(int[], AlgorithmMeanShiftClustering.famsPoint, double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
disto - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_packet_info_t: packet distorsion
distolayer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
distoratio - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: add fixed_quality
distotile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
distsqr(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
distTransformed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
ditersol() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ditersol1() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dither_mode - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
div(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
div(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
div(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
div(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
div(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
div(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
div(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
div(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
div(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
div(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
div(CVisRGBA, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div(CVisRGBA, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div(CVisRGBA, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div(CVisRGBA, long) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div_admm_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
DIV_ADMM_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
div_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
div_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
div_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
div_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
div_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
div_into(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
div_into(long) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
DIV_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
div_mu_partial_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
DIV_MU_PARTIAL_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
divButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
divergence(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the divergence with backward differences (see [2] for details)
divergence_u(double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the divergence of the optical flow
divergence_u(double[], double[], double[], double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the divergence of the optical flow
DivergenceFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
DivergenceFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction
divide(double) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
divide(libdt.Mat, double) - Method in class gov.nih.mipav.model.algorithms.libdt
divide(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
divide(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is (this / y).
Divide(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
DIVIDE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
DIVIDE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
DIVIDE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
divisions - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
dlabad(double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLABAD Original DLABAD created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlabad takes as input the values computed by dlamch for underflow and overflow, and returns the square root of each of these values if the log of large is sufficiently big.
dlabad_slu(double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
dlabrd(int, int, int, double[][], int, double[], double[], double[], double[], double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dlacn2(int, double[], double[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version auxiliary routine 3.4.2 DLACN2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dlacon2_(int, double[], double[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlacpy(char, int, int, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of LAPACK version 3.2 auxiliary routine DLACPY.
dladiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.7.0 LAPACK auxiliary routine DLADIV Original DLADIV created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., Januaary, 2013 dladiv performs complex division in real arithmetic p + i*q = (a + i*b) / (c + i*d) The algorithm is due to Michael Baudin and RObert L.
dladiv1(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: LAPACK auxiliary routine (version 3.7.0) LAPACK is a software package provided by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd, January, 2013.
dladiv2(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: LAPACK auxiliary routine version 3.7.0 LAPACK is a software package provided by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd, January, 2013.
dlae2(double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK auxiliary routine DLAE2 Original DLAE2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlae2 computes the eigenvalues of a 2-by-2 symmetric matrix [ A B ] [ B C ] On return, rt1[0] is the eigenvalue of the larger absolute value, and rt2[0] is the eigenvalue of the smaller absolute value.
dlaebz(int, int, int, int, int, int, double, double, double, double[], double[], double[], int[], double[][], double[], int[], int[][], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.3.1 LAPACK routine DLAEBZ.
DLAED6(int, boolean, double, double[], double[], double, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
dlaev2(double, double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLAEV2 Original DLAEV2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlaev2 computes the eigendecomposition of a 2-by-2 symmetric matrix [ a b ] [ b c ] On return rt1[0] is the eigenvalue of the larger absolute value, rt2[0] is the eigenvalue of the smaller absolute value, and (cs1, sn1) is the unit right eigenvector for rt1[0], giving the decomposition [ cs1 sn1 ] [ a b ] [cs1 -sn1] = [rt1 0 ] [-sn1 cs1 ] [ b c ] [sn1 cs1] [ 0 rt2]
dlafts(String, int, int, int, int, double[], int[], double, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK auxiliary test routine DLAFTS Original DLAFTS created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlafts tests the result vector against the threshold value to see which tests for this matrix type failed to pass the threshold.
dlag2(double[][], int, double[][], int, double, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK auxiliary routine DLAG2 Original DLAG2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlag2 computes eigenvalues of a 2 x 2 generalized eigenvalue problem A - w B, with scaling as necessary to avoid over-/underflow.
dlagge(int, int, int, int, double[], double[][], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLAGGE Original DLAGGE created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlagge generates a real general m by n matrix A, by pre- and post- multiplying a real diagonal matrix D with random orthogonal matrices: A = U*D*V.
dlagge_slu(int, int, int, int, double[], double[], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlagsy(int, int, double[], double[][], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine dlagsy Original DLAGSY created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlagsy generates a real symmetric matrix A, by pre- and post- multiplying a real diagonal matrix D with a random orthogonal matrix: A = U*D*U'.
dlagsy_slu(int, int, double[], double[], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlagtf(int, double[], double, double[], double[], double, double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.2 LAPACK routine DLAGTF.
dlagtm(char, int, int, double, double[], double[], double[], double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dlagts(int, int, double[], double[], double[], double[], int[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.3.1 LAPACK routine DLAGTS.
dlahd2(String) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of some code contained in the version 2.0 LAPACK auxiliary test routine DLAHD2 Original DLAHD2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlahd2 prints header information for the different test paths
dlaln2(boolean, int, int, double, double, double[][], int, double, double, double[][], int, double, double, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLALN2 Original DLALN2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlaln2 solves a system of the form (ca A - w D) X = s B or (ca A' - w D) X = s B with possible scaling ("s") and perturbation of A.
DLAM - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dlamc1(int[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of version 3.2 LAPACK auxiliary routine DLAMC1 Original DLAMC1 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlamc1 determines the machine parameters given by beta, t, rnd, and ieee1.
dlamc2(int[], int[], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of LAPACK version 3.2 auxiliary routine DLAMC2 Original DLAMC2 created by Univ. of Tennessee, Univ. of California Berkeley, nad NAG Ltd., November, 2006 Determines machine parameters 3 globals are determined: 1.) eps double The smallest positive number such that computed value(1.0 - eps) < 1.0 2.) rmin double The smallest normalized number for the machine, given by base**(emin - 1), where base is the floating point value of beta. 3.)
dlamc3(double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the LAPACK version 3.2 auxiliary routine DLAMC3 Original DLAMC3 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlamc3 is intended to force a and b to be stored prior to doing the addition of a and b, for use in situations where optimizers might hold one of these in a register
dlamc4(int[], double, int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLAMC4 Original DLAMC4 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlamc4 is a service routine for dlamc2
dlamc5(int, int, int, boolean, int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLAMC5 Original DLAMC5 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlamc5 attempts to compute rmax, the largest machine floating-point number, without overflow.
dlamch(char) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLAMCH Original DLAMCH created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlamch determines double precision machine parameters.
DLAMRG(int, int, double[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
dlaneg(int, double[], double[], double, double, int) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlaneg.
dlangb(char, int, int, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLANGB Original DLANGB created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlangb returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of largest absolute value of an n by n band matrix A, with kl sub-diagonals and ku super-diagonals.
dlange(char, int, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLANGE Original DLANGE created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlange returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of the largest absolute value of a real matrix A.
dlangs(char, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlangt(char, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dlanhs(char, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port the the version 3.1 LAPACK auxiliary routine DLANHS Original DLANHS created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlanhs returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of largest absolute value of a Hessenberg matrix A.
dlansb(char, char, int, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLANSB Original DLANSB created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlansb retruns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of largest absolute value of an n by n symmetric band matrix A, with k super-diagonals.
dlansp(char, char, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLANSP Original DLANSP created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlansp returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of largest absolute value of a real symmetric matrix A, supplied in packed form.
dlanst(char, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLANST Original DLANST created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlanst returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the element of the largest absolute value of a real symmetric tridiagonal matrix A
dlansy(char, char, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLANSY.
dlantr(char, char, char, int, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dlaord(char, int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK auxiliary routine DLAORD.
dlapy2(double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLAPY2 Original DLAPY2 created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlapy2 returns sqrt(x**2 + y**2), taking care not to cause unnecessary overflow.
dlapy3(double, double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: dlapy3 is a port of hte version 3.1 LAPLACK auxiliary routine DLAPY3 Original DLAPY3 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlapy3 returns sqrt(x**2+y**2+z**2), taking care not to cause unnecessary overflow.
dlaqge(int, int, double[][], int, double[], double[], double, double, double, char[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dlaqgs(SuperLU.SuperMatrix, double[], double[], double, double, double, char[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlaqp2(int, int, int, double[][], int, int[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dlaqps(int, int, int, int, int[], double[][], int, int[], double[], double[], double[], double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dlaqsy(char, int, double[][], int, double[], double, double, char[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
dlar1v(int, int, int, double, double[], double[], double[], double[], double, double, double[], boolean, int[], double[], double[], int[], int[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of the version 3.4.2 LAPACK DLAR1V auxiliary routine.
dlaran(int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLARAN Original DLAAN created by Univ. of Tennessee, Univ.
dlaran_slu(int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlarf(char, int, int, double[], int, double, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLARF Original DLARF created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlarf applies a real elementary reflector H to a real m by n matrix C, from either the left or right.
dlarfb(char, char, char, char, int, int, int, double[][], int, double[][], int, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARFB Original DLARFB created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlarfb applies a real block reflector H or its transpose H' to a real m by n matrix C, from either the left or the right.
dlarfg(int, double[], double[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARFG Original DLARFG created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlarfg generates a real elementary reflector H of order n, such that H * (alpha) = (beta), H' * H = I. ( x ) ( 0 ) where alpha and beta are scalars, and x is an (n-1)-element real vector.
dlarfp(int, double[], double[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARFP Original DLARFP created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlarfp generates a real elementary reflector H of order n, such that H * (alpha) = (beta), H' * H = I. ( x ) ( 0 ) where alpha and beta are scalars, beta is non-negative, and x is an (n-1)-element real vector.
dlarft(char, char, int, int, double[][], int, double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLARFT Original DLARFT created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlarft forms the triangular factor T of a real block reflector H of order n, which is defined as the product of k elementary reflectors.
dlarfy(char, int, double[], int, double, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLARFY Original DLARFY created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlarfy applies an elementary reflector, or Householder matrix, H, to an n by n symmetric matrix C, from both the left and the right.
dlarnd(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLARND Original DLARND created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlarnd returns a random real number from a uniform or normal distribution.
dlarnd_slu(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlarnv(int, int[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARNV Original DLARNV created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlarnv returns a vector of n random real numbers from a uniform or normal distribution
dlarnv_slu(int, int[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlaror(char, char, int, int, double[][], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK auxiliary test routine DLAROR.
dlarot(boolean, boolean, boolean, int, double, double, double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLAROT Original DLAROT created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlarot applies a (Givens) rotation to two adjacent rows or columns, where one element of the first and/or last column/row may be a separate variable.
dlarot_slu(boolean, boolean, boolean, int, double, double, double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlarra(int, double[], double[], double[], double, double, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarra.
dlarrb(int, double[], double[], int, int, double, double, int, double[], double[], double[], double[], int[], double, double, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrb.
dlarrc(char, int, double, double, double[], double[], double, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrc.
dlarrd(char, char, int, double, double, int, int, double[], double, double[], double[], double[], double, int, int[], int[], double[], double[], double[], double[], int[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrd.
dlarre(char, int, double[], double[], int, int, double[], double[], double[], double, double, double, int[], int[], int[], double[], double[], double[], int[], int[], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarre.
dlarrf(int, double[], double[], double[], int, int, double[], double[], double[], double, double, double, double, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.2 LAPACK auxiliary routine dlarrf.
dlarrj(int, double[], double[], int, int, double, int, double[], double[], double[], int[], double, double, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.2 LAPACK auxiliary routine dlarrj.
dlarrk(int, int, double, double, double[], double[], double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrk.
dlarrr(int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrr.
dlarrv(int, double, double, double[], double[], double, int[], int, int, int, double, double, double, double[], double[], double[], int[], int[], double[], double[][], int, int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK auxiliary routine dlarrv.
dlartg(double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARTG Original DLARTG created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlartg generates a plane rotation so that [ cs sn ] . [ f ] = [ r ] where cs*cs + sn*sn = 1. [ -sn cs ] [ g ] [ 0 ] If g = 0, then cs = 1 and sn = 0.
dlartg_slu(double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlaruv(int[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLARUV Original DLARUV created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlaruv returns a vector of n random real numbers from a uniform (0,1) distribution (n <= 128).
dlaruv_slu(int[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlas2(double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK auxiliary routine DLAS2.
dlascl(char, int, int, double, double, int, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLASCL Original DLASCL created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlascl multiplies the m by n real matrix A by the real scalar cto/cfrom.
DLASD0(int, int, double[], double[], double[][], int, double[][], int, int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD1(int, int, int, double[], double[], double[], double[][], int, double[][], int, int[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD2(int, int, int, int[], double[], double[], double, double, double[][], int, double[][], int, double[], double[][], int, double[][], int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD3(int, int, int, int, double[], double[][], int, double[], double[][], int, double[][], int, double[][], int, double[][], int, int[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD4(int, int, double[], double[], double[], double, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD5(int, double[], double[], double[], double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD6(int, int, int, int, double[], double[], double[], double[], double[], int[], int[], int[], int[][], int, double[][], int, double[][], double[], double[][], double[], int[], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD7(int, int, int, int, int[], double[], double[], double[], double[], double[], double[], double[], double, double, double[], int[], int[], int[], int[], int[], int[][], int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASD8(int, int, double[], double[], double[], double[], double[], double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASDA(int, int, int, int, double[], double[], double[][], int, double[][], int[], double[][], double[][], double[][], double[][], int[], int[][], int, int[][], double[][], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASDQ(char, int, int, int, int, int, double[], double[], double[][], int, double[][], int, double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
DLASDT(int, int[], int[], int[], int[], int[], int) - Method in class gov.nih.mipav.model.structures.jama.SVD
dlaset(char, int, int, double, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 auxiliary routine DLASET.
dlaset_slu(char, int, int, double, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlasq1(int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ1. -- -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq2(int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ2. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq2(int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.2 LAPACK routine DLASQ2. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq3(int[], int[], double[], int[], double[], double[], double[], double, int[], int[], int[], boolean, int[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ3 -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq3(int[], int[], double[], int[], double[], double[], double[], double, int[], int[], int[], boolean, int[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.2 LAPACK routine DLASQ3 -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq4(int, int, double[], int, int, double, double, double, double, double, double, double[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ4. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq4(int, int, double[], int, int, double, double, double, double, double, double, double[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.2 LAPACK routine DLASQ4. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq5(int, int, double[], int, double, double[], double[], double[], double[], double[], double[], boolean) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ5 -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq5(int, int, double[], int, double, double[], double[], double[], double[], double[], double[], boolean) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.2 LAPACK routine DLASQ5 -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq6(int, int, double[], int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DLASQ6. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasq6(int, int, double[], int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.2 LAPACK routine DLASQ6. -- Contributed by Osni Marques of the Lawrence Berkeley National -- -- Laboratory and Beresford Parlett of the Univ. of California at -- -- Berkeley -- -- November 2008 -- -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- ..
dlasr(char, char, char, int, int, double[], double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLASR Original DLASR created by Univ. of Tennessee, Univ.
dlasrt(char, int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK auxiliary routine DLASRT Original DLASRT created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlasrt sorts the numbers in d in increasing order if id == 'I' or in decreasing order if id == 'D'.
dlassq(int, double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLASSQ Original DLASSQ created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlassq returns the values scl and smsq such that (scl**2)*smsq = x[0]**2 + x[incx]**2 + ... + x[(n-1)*incx]**2 + (scale**2)*sumsq The value of sumsq is assumed to be non-negative and scl returns the value scl = max(scale,abs(x[i])). scale and sumsq refer to the original supplied values in scale[] and sumsq[]. scl and smsq are the returned values in scale[] and sumsq[] that overwrite the orginal values.
dlasv2(double, double, double, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK auxiliary routine DLASV2 Original DLASV2 created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dlasv2 computes the singular value decomposition of a 2-by-2 triangular matrix [ f g ] [ 0 h ].
dlaswp(int, double[][], int, int, int, int[], int) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
dlatb4(String, int, int, int, char[], int[], int[], double[], int[], double[], char[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.4.0 LAPACK test routine DLATB4.
dlatb4_slu(String, int, int, int, char[], int[], int[], double[], int[], double[], char[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlatm1(int, double, int, int, int[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLATM1 Original DLATM1 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatm1 computes the entries of D[0...n-1] as specified by mode, cond, and irsign. idist and iseed determine the generation of random numbers. dlatm1 is called by dlatmr to generate random test matrices for LAPACK programs.
dlatm1_slu(int, double, int, int, int[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlatm2(int, int, int, int, int, int, int, int[], double[], int, double[], double[], int, int[], double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLATM2 Original DLATM2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatm2 returns the (i,j) entry of a random matrix of dimension (m,n) described by the other parameters.
dlatm3(int, int, int, int, int[], int[], int, int, int, int[], double[], int, double[], double[], int, int[], double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is the port of the version 3.1 LAPACK auxiliary test routine DLATM3 Original DLATM3 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatm3 returns the (isub, jsub) entry of a random matrix of dimension (m,n) described by the other parameters.
dlatm4(int, int, int, int, int, double, double, double, int, int[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary test routine DLATM4 Original DLATM4 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatm4 generates basic square matrices, which may later be multiplied by others in order to produce test matrices.
dlatmr(int, int, char, int[], char, double[], int, double, double, char, char, double[], int, double, double[], int, double, char, int[], int, int, double, double, char, double[][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DLATMR Original DLATMR created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatmr generates random matrices of various types for testing LAPACK programs. dlatmr operates by applying the following sequence of operations: 1.)
dlatms(int, int, char, int[], char, double[], int, double, double, int, int, char, double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DLATMS Original DLATMS created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatms generates random matrices with specified singular values (or symmetric/hermitian with specified eigenvalues) for testing LAPACK programs.
dlatms_slu(int, int, char, int[], char, double[], int, double, double, int, int, char, double[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlatrd(char, int, int, double[][], int, double[], double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK auxiliary routine DLATRD Original DLATRD created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dlatrd reduces nb rows and columns of a real symmetric matrix A to symmetric tridiagonal form by an orthogonal similarity transformation Q'*A*Q, and returns the matrices V and W which are needed to apply the transformation to the unreduced part of A.
dlatrs(char, char, char, char, int, double[][], int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version auxiliary routine 3.4.2 DLATRS.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dlauu2(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version auxiliary routine 3.4.2 DLAUU2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dlauum(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version auxiliary routine 3.4.2 DLAUUM.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dLdA(double) - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Partial derivative of laplace dist with respect to A.
dLdA(double) - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Partial derivative of Lorentz distribution with respect to A.
dLdbeta(double) - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Partial derivative of laplace dist with respect to beta.
dLdgamma(double) - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Partial derivative of Lorentz distribution with respect to gamma.
dLdmu(double) - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Partial derivative of laplace dist with respect to mu.
dLdxMedian(double) - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Partial derivative of Lorentz distribution with respect to xMedian.
dlinsol() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlinsol1() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlinsolx(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlinsolx1(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlinsolx2(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dlinsolx3(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dloc_i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
dloc_j - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
dlqt01(int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of the version 3.1 LAPACK test routine DLQT01.
dlqt02(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK routine DLQT02.
dlqt03(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DLQT03.
dlsolve(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dLUMemInit(SuperLU.fact_t, double[], int, int, int, int, int, double, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, int[][], double[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dLUMemXpand(int, int, SuperLU.MemType, int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dLUWorkFree(int[], double[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dLUWorkInit(int, int, int, int[][], double[][], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DM3 - Static variable in class gov.nih.mipav.model.file.FileUtility: Gatan's Digital Micrograph version 3 file format. extension: .dm3
dmach(char) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DMAKE(String, char, char, int, int, double[][], int, double[], int, int, int, boolean[], double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dmap(double[][], double[][], double[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DMatch() - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch
DMatch(int, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch
DMatchComparator() - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatchComparator
dmatvec(int, int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
dMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
dMax - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
DMC - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
DMCANP(int, double[][], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
dmemory_usage(int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DMEY - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
dmey_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
dMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
dMin - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
DMMCH(char, char, int, int, int, double, double[][], int, double[][], int, double, double[][], int, double[], double[], double[][], int, double, double[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D
DMPHYC(int, double[][], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DMVCH(char, int, int, double, double[][], int, double[], int, double, double[], int, double[], double[], double[], double, double[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
dn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t
DN - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
DNformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.DNformat
DNL - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Number of Lines segment identifier.
DNL - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DNL - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
dnormj(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
dnormj(int, DoubleDouble[], int) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
dnrm2(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.LSQR
dnrm2(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
dnrm2(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 10/14/93 DNRM2 function Original code written by Sven Hammarling, Nag Ltd. dnrm2 returns the euclidean norm of a vector via the function sqrt(x'*x)
dnrm2(int, DoubleDouble[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
dnrm2_(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
do_barray_io(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_barray_control, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
do_block_smoothing - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
do_color - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
do_cross_validation() - Method in class gov.nih.mipav.model.algorithms.LIBSVM
do_cross_validation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
do_cross_validation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
do_csvd - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
do_deblur - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
do_display - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
DO_ERROR_TEST - Variable in class gov.nih.mipav.model.algorithms.CVODES
do_estimate_kernel - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
do_fancy_upsampling - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
do_momentum_h(Matrix, Matrix, Matrix, Matrix, double[], int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
do_momentum_w(Matrix, Matrix, Matrix, Matrix, Matrix, Matrix, double[], int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
DO_NOT_DISPOSE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
DO_NOT_TAKE_OWNERSHIP - gov.nih.mipav.model.algorithms.CeresSolver.Ownership
do_osvd - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
DO_OUTPUT_NEW_IMAGE - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating whether an algorithm should output a new image.
DO_PROCESS_3D_AS_25D - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating whether an algorithm should process a 3D image as a set of 2D slices instead of a 3D volume.
DO_PROCESS_RGB - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating whether to process the each channel of an RGB image (ignored for grayscale images).
DO_PROCESS_SEPARABLE - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating whether separable convolution kernels should be used in an algorithm.
DO_PROCESS_WHOLE_IMAGE - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating whether the whole image should be processed (true), or just areas within VOIs (false).
do_sarray_io_byte(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
do_sarray_io_short(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
do_shrinking() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
do_shrinking() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
do_shrinking() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
do_shrinking() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
do_svd - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
do25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Only applies to 3D, if true do slice by slice.
do25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Only applies to 3D, if true do slice by slice.
do25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: flag indicating 2.5D processing.
do25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Currently only do5D = true is implemented.
do25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
do25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: In 3D if do25D == true, process each slice separately.
do25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Flag indicating 2.5D processing.
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
do25D - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
do25DCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
do25DCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
do2D - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
do3D - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
do4D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess: Whether this algorithm will utilize 4D processing optimization
doAdjacent - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
doAdjMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
doAIFTransfer - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
doAllVolumes - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
doAllVolumes - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
doAnnotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
doAutomaticLabels - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
doAutomaticLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
doAutomaticLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Returns the automatic labels flag.
doAutomaticLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
doAverage - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
doAveraging - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: if true create an image averaging together the slices in the filtered version.
doAveraging - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
DOB - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
doBayesShrinkThresholdComputation - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
DOBDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
doBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
DOBMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
doByteAddClip(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doByteAddPromote(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doByteAverage(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doByteMax(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 4d-byte-images by doing math on an xyt buffer that is built from both images
doByteMin(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doByteNormClip(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doByteNormPromote(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doByteStdDev(byte[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
DOBYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
doCalcThresholdVolume() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns true if 'Calculate threshold volume' is selected.
doCalcThresholdVolume() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Whether or not to calculate the threshold volume.
doCellTracking - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: When true, do a Cell-tracking version of Active GVF Contours:.
doCellTrackingCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: Checkbox to turn cell-tracking on/off:.
doCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
doCenter - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
doCenter - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Whether to show the center of rotation point in the volume and allow the user to change it.
doCheckerboardAnimate - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
doClip - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
doClip - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
doClip - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: whether to clip or promote
doClip - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doClip(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Calculates the rotation for the arbitrary clip plane.
doClose - Variable in class gov.nih.mipav.view.dialogs.JDialogSwap34: DOCUMENT ME!
doClose - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims: DOCUMENT ME!
doCoarseness - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
doCoarseness - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
doCollapse() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: The top-level edge collapse operation.
doColocWithThresholds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
doColocWithThresholds - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
doColor - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
doColorCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: CheckBox to turn color registration on or off:.
DoCombinedPCA() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs principal component analysis on the shape and the texture data.
doContrast - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
doContrast - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
doConv() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
doConvTre - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
doCorrelationRatioSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Whether the available cost functions should be performed
doCorrelationRatioSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Whether the available cost functions should be performed
DoCParamExperiments(Vector<CDVector>, Vector<CDVector>, CDMatrix, CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs a set of model parameter displacement experiments on the training set given a set of displacment vectors.
doCrop - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
doCrop - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
DOCUMENT_NAME - Static variable in class gov.nih.mipav.model.file.FileSVS
DOCUMENT_NAME - Static variable in class gov.nih.mipav.model.file.FileTiff
documentGroup - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
documentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Include: attributes.
documentName - Variable in class gov.nih.mipav.model.file.FileSVS
documentName - Variable in class gov.nih.mipav.model.file.FileTiff
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.ExperimenterRef
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.ExperimentRef
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef: attributes.
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.InstrumentRef: Attributes.
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser.Pump
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate.ScreenRef
documentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.ProjectRef
documentSubtype - Variable in class gov.nih.mipav.model.file.FileInfoZVI
documentType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
doCurveIntersect - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
doDecimation(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
doDeleteRows(JTable) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Removes the currently selected rows from table.
doDenoise - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
doDenoise - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
doDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
doDicom() - Method in class gov.nih.mipav.view.dialogs.JDialogOrder: Accessor that returns flag for ordering to dicom.
doDilate - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: When true, dilate the cell radius before finding the next contour:.
doDilateCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: Checkbox to turn cell-tracking on/off:.
doDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
doDirectionality - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
doDirectionality - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
doDoubleAddClip(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doDoubleAddClipComplex(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doDoubleAverage(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doDoubleAverageComplex(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doDoubleMax(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doDoubleMaxComplex(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doDoubleMin(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doDoubleMinComplex(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doDoubleNormClip(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doDoubleStdDev(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doDrag - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: no adjusted slice movements with mouseDrag
doDrag - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
doDrag - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
doEdgeDetect(AlgorithmEmbeddedConfidenceEdgeDetection.BgImage, AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
DoEdgeStrength(double, double[][], double[][], double, double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
doEllipticFourierDescription - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
doEndSlices - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
doEnhanced - Variable in class gov.nih.mipav.model.file.FileWriteOptions: Whether dicom files are saved in enhanced format.
doEnhanced() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Whether to save dicom files in enhanced format.
doEnhanced(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions: Sets the flag for saving dicom files in enhanced format.
doEnhanced(boolean, int[]) - Method in class gov.nih.mipav.model.file.FileDicom
doErnst - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI: The variable representing whether the blur should be performed.
doesSubsetDicomTagTableExist() - Static method in class gov.nih.mipav.model.file.DicomDictionary: Quietly checks to see if the subset dicom dictionary exists on disk.
doExitCmdLineOnError() - Method in class gov.nih.mipav.view.ViewUserInterface: Tells whether or not to exit on an error when running from the command line
dof - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: The number of degrees of freedom to use when registering the original image against the flipped image.
dof - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
dof - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Degrees of freedom.
dof - Variable in class gov.nih.mipav.model.file.FileAfni: FUNC_TT_TYPE Student t Degrees-of-Freedom (DOF).
dof - Variable in class gov.nih.mipav.model.file.FileInfoMGH
dof - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Maximum degrees of freedom when running the optimization.
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
DOF - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
DOFACT - gov.nih.mipav.model.structures.jama.SuperLU.fact_t
doFAMS(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_cut[][], AlgorithmMeanShiftClustering.fams_hash_entry2[][], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
doFFT(double[], double[], int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Perform one dimension fast fourier transformation from start slice to end slice on given data, which includes x, y or orientation.
doFFT(float[], float[], int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Perform one dimension fast fourier transformation from start slice to end slice on given data, which includes x, y or orientation.
doFilter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: if true create a filtered version of the original image.
doFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
doFindKLIteration(int, int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
doFloatAddClip(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doFloatAddClipARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doFloatAddClipComplex(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doFloatAddPromote(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doFloatAddPromoteComplex(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doFloatAverage(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doFloatAverageARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doFloatAverageComplex(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doFloatMax(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doFloatMaxARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doFloatMaxComplex(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doFloatMin(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doFloatMinARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doFloatMinComplex(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doFloatNormClip(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doFloatNormClipARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doFloatNormPromote(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doFloatStdDev(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doFloatStdDevARGB(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doForce - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: force precision to display at maximum.
doForceInPlace() - Method in class gov.nih.mipav.view.ViewUserInterface: Checks whether the dialog should force the algorithm to replace the image (no new frame)
doForcePrecision() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: DOCUMENT ME!
DOFT2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Generate the Fuzzy-C means classes from the CED image
doFuzzyCmean(ModelImage, Vector<Vector<ModelImage>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Generate the Fuzzy-C means classes from the CED image
dog - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current GSS data.
dog - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
doGEBigEndianPixelData - Variable in class gov.nih.mipav.model.file.FileDicom
doGeometricCenterLabel - Variable in class gov.nih.mipav.model.structures.VOIBase: If doGeometricCenterLabel = true and if active == false and if closed = true, execute drawGeometricCenterLabel when in drawSelf
DOGLEG - gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyType
DOGLEG(int, double[], int, double[], double[], double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dogleg_step_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
dogleg_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
dogleg_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
dogleg_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
dogleg_type_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
DoglegStrategy(CeresSolver.TrustRegionStrategyOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
DoglegStrategyFixtureEllipse() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipse
DoglegStrategyFixtureEllipseCorrectGaussNewtonStep() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseCorrectGaussNewtonStep
DoglegStrategyFixtureEllipseCorrectGaussNewtonStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace
DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional
DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegStrategyFixtureEllipseValidSubspaceBasis() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseValidSubspaceBasis
DoglegStrategyFixtureEllipseValidSubspaceBasis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegStrategyFixtureValley() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValley
DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient
DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient
DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DoglegType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.DoglegType
doGraph - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
doGraph - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Produce 2 output graphs - 1 for rotation and 1 for 2 translations.
doGraph - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Produce 2 output graphs - 1 for 3 rotations and 1 for 3 translations.
doGraph - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Produce 2 output graphs - 1 for rotation and 1 for 2 translations.
doGraph - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Produce 2 output graphs - 1 for 3 rotations and 1 for 3 translations.
doGraph - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
doGraph - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
doGraph - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
doGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
doHifiTre - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
doImageDivision(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: takes the data of the two images, one unsharp'd and the other gaussian blur'd, and divides the two pixel-by-pixel to find the locally normalized value for each pixel.
doInflation(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: surface inflation operation 0 = initialize 1 = inflate 2 = terminate.
doInflation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: surface inflation operation 0 = initialize 1 = inflate 2 = terminate.
doInflationStep() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: surface inflation.
doInflationStep() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: surface inflation.
doInner - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
DoInnerIterationsIfNeeded() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
doIntAddClip(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doIntAddClipARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doIntAddPromote(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doIntAddPromoteARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doIntAverage(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doIntAverageARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doIntensityOnLeftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Check boxes for whether right and left mouse clicks produce default actions.
doIntMax(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doIntMaxARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doIntMin(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doIntMinARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doIntNormClip(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doIntNormClipARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doIntNormPromote(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doIntNormPromoteARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 short images
doIntStdDev(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doIntStdDevARGB(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doInvMat - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doIRSPGR() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
doIt(int, int, int, Vector, MediaLocator) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: DOCUMENT ME!
doJTEM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
doJTEM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
doJTEM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Turns the full version of Powell's algorithm on/off.
doJTEM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Turns the full version of Powell's algorithm on/off.
doJTEM - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
doJTEM - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: When true, the full version of JTEM Powell search is used in the registration algorithm.
doJTEM - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: When true, the full version of JTEM Powell search is used in the registration algorithm.
doLevelset(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
doLinearRescale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Boolean value.
doLinearRescale - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: If true, the range of second image is same as the range of the first image.
DoLineSearch(Vector<Double>, Vector<Double>, double, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
doLinkedScrolling(int) - Method in class gov.nih.mipav.view.ViewJFrameImage
doLogResult - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Boolean value.
doLogResult - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: If true, calculates the log of the result image for better visualization.
doLogX - Variable in class gov.nih.mipav.view.ViewJComponentGraph
doLogX - Variable in class gov.nih.mipav.view.ViewJFrameGraph
doLogY - Variable in class gov.nih.mipav.view.ViewJComponentGraph
doLogY - Variable in class gov.nih.mipav.view.ViewJFrameGraph
doLongAddClip(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doLongAddClipARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doLongAddPromote(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doLongAddPromoteARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doLongAverage(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doLongAverageARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doLongMax(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doLongMaxARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doLongMin(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doLongMinARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doLongNormClip(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doLongNormClipARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doLongNormPromote(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doLongNormPromoteARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 short images
doLongStdDev(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doLongStdDevARGB(long[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doLS - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
doMahalanobisDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
doMahalanobisDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
domain - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
domainMax - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
domainMin - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
domainPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
doMatch - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
doMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
doMeanShiftAdaptiveIteration(AlgorithmMeanShiftClustering.fams_res_cont, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
doMedian - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
doMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
doMinimumPerimeterPolygon - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
doMultiLevel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
doMultiLevel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
doMultiThread - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
doMultiThread - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
doMultiThread - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
doMultiThread - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
doMultiThread - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
doMutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Whether the available cost functions should be performed
doMutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Whether the available cost functions should be performed
doneButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Button to indicate that the painting is finished and the dialog and attached image frame should be closed.
doneLeastSquares - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
doneLeastSquares - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
doneSignal - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
doneSignal - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
donorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
donorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
donorIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
donorIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
doNormMutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Whether the available cost functions should be performed
doNormMutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Whether the available cost functions should be performed
doNormXCorr - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Whether the available cost functions should be performed
doNormXCorr - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Whether the available cost functions should be performed
dontAskAgain - Variable in class gov.nih.mipav.view.dialogs.JDialogOrder: Whether to ask user next time choice is available for AFNI ordering.
dontOpenFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
doOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
doOldLayout() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This is an alternative layout arrangement.
doOnlyActiveContours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Boolean for if the algorithm should ONLY check active contours
doOr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: If true, or thresholds.
doOr - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
doOrients - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: flag for turning on/off using the image orientations to match the images
doOrients - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
doOrients - Variable in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
doOrigins - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: flag for turning on/off using the image origins to match the images
doOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
doOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
doOrigins - Variable in class gov.nih.mipav.view.ViewJFrameImage: When loading an image into B slot, should origins and orients be matched?
doOuter - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
doOutputNewImage() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
doPad - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doPad - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: The boolean value to determine whether to pad the original image or not.
doPadding(int[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert the blank images to the end of image.
doParseFile() - Static method in class gov.nih.mipav.model.file.DicomDictionary
doParseFile() - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary
doPathStep(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Take the specified number of steps along the current path using the current path step size.
doPathStep(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Take the specified number of steps along the current path using the current path step size.
doPathStep(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
DoPCA() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Apply PCA analysis
DoPCA(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Performs the principal component analysis on the data items.
doPick(int, int, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
doPick(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Locate the surface that corresponds to a picking operation in the viewer window.
DoPoseExperiments(Vector<CDVector>, Vector<CDVector>, CDMatrix, CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs a set of pose parameter displacement experiments on the training set given a set of displacment vectors.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Register the result image(s) in the script runner.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Register the result image(s) in the script runner.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Store the algorithm's result image (if one has been created).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Store the result images in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Store the result images in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Store the result images in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Perform any actions required after the running of the algorithm is complete.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Store the result images in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Store the result images in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Store the result image in the script runner's image table now that the action execution is finished.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Register the result image in the script runner.
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).
doPostAlgorithmActions() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Store the result image in the script runner's image table now that the action execution is finished.
doPredict(int[][], Features[], Model, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict: Note: The streams are NOT closed
doPredict(int[][], Features[], Model, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
doPredict(int[][], FeaturesSVM[], svm_model, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
doPredict(BufferedReader, Writer, Model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict: Note: The streams are NOT closed
doPreview - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Whether preview mode is turned on.
doProcess3DAs25D() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doProcessRGB() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doProcessSeparable() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doProcessWholeImage() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doPseudoColor(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Turn curvature-based color map on/off.
doPutInQuicklist() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Whether or not to put the file into the recently used image list after saving
doPutInQuicklist(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions: Sets the flag for putting the image into the recently used image list
doRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
doRefMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
doReg - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
doRegionB - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
doRegionB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
doRegistrationEnd(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Near the base, base contour starts as the initial estimate, and repeat the same process toward the end slices.
doRegistrationEnd(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Near the base, base contour starts as the initial estimate, and repeat the same process toward the end slices.
doRegistrationMid(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: The proposed model uses 2D registration to register 2D slices from the middle slice to the adjacent slice.
doRegistrationMid(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int, int, int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: The proposed model uses 2D registration to register 2D slices from the middle slice to the adjacent slice.
doRegistrationStart(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Near the apex, apex contour starts as the initial estimate, and repeat the same process toward the end slices.
doRegistrationStart(ModelImage, ModelImage, Vector<Vector<ModelImage>>, int, int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Near the apex, apex contour starts as the initial estimate, and repeat the same process toward the end slices.
DoRegression(CDMatrix, CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: Calculates the regression matrix, R from the set of experiments in C and X, obtaining the relationship: C = RX.
doRelative - Variable in class gov.nih.mipav.view.WindowLevel: If true, window/level adjusted relative to the current transfer function values If false, window/level adjusted to the absolute image position values
doRename - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
doReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
doResample - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The boolean value to determine whether to resample the original image or not.
doResample(int[], float[], boolean, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Resample the images to power of 2.
doReversibleTransformation() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
dorg2l(int, int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DORG2L Original DORG2L created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dorg2l generates an m by n real matrix Q with orthonormal columns, which is defined as the last n columns of a product of k elementary reflectors of order m Q = H[k-1] ...
dorg2r(int, int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK routine DORG2R Original DORG2R created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dorg2r generates an m by n real matrix Q with orthonormal columns, which is defined as the first n columns of a product of k elementary reflectors of order m Q = H[0] H[1] ...
dorgbr(char, int, int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DORGBR.
dorgl2(int, int, int, double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dorglq(int, int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK routine DORGLQ.
dorgql(int, int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DORGQL Original DORGQL created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dorgql generates the m-by-n real matrix Q with orthonormal columns, which is defined as the last n columns of a product of k elementary reflectors of order m Q = H[k-1] ...
dorgqr(int, int, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK routine DORGQR Original DORGQR created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dorgqr generates an m-by-n real matrix Q with orthonormal columns, which is defined as the first n columns of a product of k elementary reflectors of order m Q = H[0] H[1] ...
dorgtr(char, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DORGTR Original DORGTR created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dorgtr generates a real orthogonal matrix Q which is defined as the product of n-1 elementary reflectors of order N, as returned by dsytrd: If uplo = 'U', Q = H[n-2] ...
doRician - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: If true, use unbiased version of NLM to deal with Rician noise in MRI
doRician - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
doRicianCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
dorm2l(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DORM2L Original DORM2L created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dorm2l overwrites the general real m by n matrix C with Q * C if side == 'L' and trans == 'N', or Q' * C if side == 'L' and trans == 'T', or C * Q if side == 'R' and trans == 'N', or C * Q' if side == 'R' and trans == 'T' where Q is a real orthogonal matrix defined as a product of k elementary reflectors Q = H[k-1] ...
dorm2r(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.2 LAPACK routine DORM2R Original DORM2R created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dorm2r overwrites the general real m by n matrix C with Q * C if side = 'L' and trans = 'N', or Q'* C if side = 'L' and trans = 'T', or C * Q if side = 'R' and trans = 'N', or C * Q' if side = 'R' and trans = 'T', where Q is a real orthogonal matrix defined as the product of k elementary reflectors Q = H(0) H(1) . . .
dormbr(char, char, char, int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dorml2(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dormlq(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dormql(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.3.1 LAPACK routine DORMQL.
dormqr(char, char, int, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.2 LAPACK routine DORMQR Original DORMQR created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., November, 2006 dormqr overwrites the general real m by n matrix C with side = 'L' side = 'R' trans = 'N': Q * C C * Q trans = 'T': Q**T * C C * Q**T where Q is a real orthogonal matrix defined as the product of k elementary reflectors Q = H(0) H(1) . . .
dormtr(char, char, char, int, int, double[][], int, double[], double[][], int, double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.2 LAPACK routine DORMTR.
doRotateCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
dort01(char, int, int, double[][], int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is the port of version 3.1 LAPACK test routine DORT01.
dort01(char, int, int, double[][], int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is the port of version 3.1 LAPACK test routine DORT01.
dort03(char, int, int, int, int, double[][], int, double[][], int, double[], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SVD
doRun() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
doSaveAllOutputs - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
doSaveEnhancedDicom() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
DoSearch(double, double, double, CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ArmijoLineSearch
DoSearch(double, double, double, CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch
DoSearch(double, double, double, CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch
doSecondIteration - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: If true, do second iteration excluded subtrhesholded region from first iteration.
doSecondIteration - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
doSecondIteration - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
doSecondIteration - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: First time the dialog called, this function is invoked to do segmentation.
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: First time the dialog called, this function is invoked to do segmentation.
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: First time the dialog called, this function is invoked to do segmentation.
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: First time the dialog called, this function is invoked to do segmentation.
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: First time the dialog called, this function is invoked to do segmentation.
doSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Driver to do automatic prostate segmentation.
doSegmentation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: First time the dialog called, this function is invoked to do segmentation.
doSegmentation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: First time the dialog called, this function is invoked to do segmentation.
doSeparable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Whether to use the edge detection algorithm with a separable convolver.
doSetupOnly - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
DoShapeAlignment(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Alignes shapes and calc mean- and reference-shape.
doShortAddClip(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doShortAddClipARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doShortAddPromote(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doShortAddPromoteARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates addition between 2 images
doShortAverage(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doShortAverageARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the average between 2 images
doShortMax(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doShortMaxARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the max between 2 images
doShortMin(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doShortMinARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the minimum between 2 images
doShortNormClip(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doShortNormClipARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 images
doShortNormPromote(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 short images
doShortNormPromoteARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the norm between 2 short images
doShortStdDev(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doShortStdDevARGB(short[]) - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Calculates the standard deviation between 2 images
doSigmaResolutionCorrection() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
doSpec() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
doSpgr() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
doSplit - Variable in class gov.nih.mipav.view.RubberbandLine: boolean for if this is a VOI Splitter (not line drawer)
doStamp - Variable in class gov.nih.mipav.model.file.FileWriteOptions: Used for stamping DICOM images with MIPAV reference.
doStamp() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Whether or not to stamp DICOM images.
doStamp(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions: Sets the flag for stamping DICOM images with a reference to MIPAV as a secondary processor.
doStampSecondary() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
doStampSecondary(boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Sets whether MIPAV will edit the DICOM tags of this image with a secondary stamp.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Whether to use subsampling when registering the original image against the flipped image.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: If true subsample for levelEight, levelFour and levelTwo analyses.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: If true subsample for levelEight, levelFour and levelTwo analyses.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: if true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: If true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: if true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: If true subsample for levelEight, levelFour and levelTwo analyses.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: if true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: If true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: if true subsample.
doSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: If true subsample for levelEight, levelFour and levelTwo analyses.
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
doSubsample - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
dot(int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: conjugate gradient methods.
dot(LIBSVM.svm_node[], LIBSVM.svm_node[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
dot(LIBSVM.svm_node[], LIBSVM.svm_node[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
dot(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
dot(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
dot(svm_node[], svm_node[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
Dot(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Dot(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Dot(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
DOT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
DOT_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
DOT_RANGE - Static variable in class gov.nih.mipav.model.file.FileSVS
DOT_RANGE - Static variable in class gov.nih.mipav.model.file.FileTiff
DOT_SIGN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
doTalairach - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doTest - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
doTest - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
doTIFFOrientation - Variable in class gov.nih.mipav.model.file.FileIO
doTIFFOrientation - Variable in class gov.nih.mipav.model.file.FileSVS
doTIFFOrientation - Variable in class gov.nih.mipav.model.file.FileTiff
doTile - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
doTile - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
dotprd(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
dotProduct(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
dotProduct(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
dotProduct(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Finds dotproduct of two vectors.
DotProduct(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
DoTransformCols(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
DoTransformRows(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
doTraverse(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
doTrilinear(ModelImage, ModelImage, float[], TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Performs trilinear interpolation on black and white image data.
dotTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
DOUBLE - gov.nih.mipav.model.file.FileDicomTagInfo.NumType: An IEEE754:1985 64-bit double is stored in the tag's value.
DOUBLE - gov.nih.mipav.model.file.FileSVS.Type: double precision 8 byte IEEE format
DOUBLE - gov.nih.mipav.model.file.FileTiff.Type: double precision 8 byte IEEE format
DOUBLE - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type double (64 bits per voxel).
DOUBLE - gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType
DOUBLE - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
DOUBLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
DOUBLE - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
DOUBLE - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type double (64 bits per voxel).
DOUBLE_IMAGE_TAG - Static variable in class gov.nih.mipav.model.file.FileDicom: The tag marking the start of the double image data.
DOUBLE_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: A string with VR "OD" is stored in the tag's value.
DOUBLE_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type signed double.
double2D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
double2DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
double3D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
double3DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
DoubleArrayPointer - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
DoubleArrayPointer(double[], int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer
doubleBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
doubleBuffer - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
doubleBuffer - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
doubleBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
doubleCheck - Variable in class gov.nih.mipav.model.structures.jama.LUSOL
doublecomplex() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.doublecomplex
doublecomplex(double, double) - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.doublecomplex
doubleDigits - Variable in class gov.nih.mipav.model.algorithms.Bessel: I1MACH(14) = 53.
DoubleDistance(double, double, double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
DoubleDouble - Class in gov.nih.mipav.util: Immutable, extended-precision floating-point numbers which maintain 106 bits (approximately 30 decimal digits) of precision.
DoubleDouble() - Constructor for class gov.nih.mipav.util.DoubleDouble: Creates a new DoubleDouble with value 0.0.
DoubleDouble(double) - Constructor for class gov.nih.mipav.util.DoubleDouble: Creates a new DoubleDouble with value x.
DoubleDouble(double, double) - Constructor for class gov.nih.mipav.util.DoubleDouble: Creates a new DoubleDouble with value (hi, lo).
DoubleDouble(DoubleDouble) - Constructor for class gov.nih.mipav.util.DoubleDouble: Creates a new DoubleDouble with value equal to the argument.
DoubleDouble(String) - Constructor for class gov.nih.mipav.util.DoubleDouble: Creates a new DoubleDouble with value equal to the argument.
DoubleDoubleDigits - Variable in class gov.nih.mipav.model.algorithms.BesselEP: I1MACH(14) = 106.
doubleEntryBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
doubleInversion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
doubleInvRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
doubleToBytes(double, boolean, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: converts from double to bytes
doubleValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as a double.
doubleValue() - Method in class gov.nih.mipav.util.DoubleDouble: Converts this value to the nearest double-precision number.
DoublyConnectedSC - Class in gov.nih.mipav.model.algorithms
DoublyConnectedSC() - Constructor for class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DoublyConnectedSC(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DoublyConnectedSC(ModelImage, ModelImage, double[][], double[][], int, int, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DoublyEvenMagicSquare(int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
DoUntransformCols(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
DoUntransformRows(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
doUpdateOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
doVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
doVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
doVOI(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
doVOI(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Performs the VOI Action Command.
doVOI(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
doVoiImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: flag indicating whether output should be VOI image or mask image
doVOIImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: flag indicating whether output should be VOI image or mask image
doVOISubtraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
doVOISubtraction - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
doWaveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
doWaveletImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
doWaveletImages - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
doWaveletImages - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: DOCUMENT ME!
doWinLevOnRightBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Check boxes for whether right and left mouse clicks produce default actions.
down - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
DOWN - Static variable in class gov.nih.mipav.model.structures.VOIBase: The down arrow key.
DOWN_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
downButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
downButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
DownButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.DownButton: Creates new button with correct icon and given tool tip.
DownButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.DownButton: Creates new button with correct icon and given tool tip.
DownButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.DownButton: Creates new button with correct icon and given tool tip.
downcoef(boolean, double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downcoef(char, double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downcoef_axis(double[][][], PyWavelets.ArrayInfo, double[][][], PyWavelets.ArrayInfo, PyWavelets.DiscreteWavelet, int, PyWavelets.Coefficient, PyWavelets.MODE, int, PyWavelets.DiscreteTransformType) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downcoef_axis(double[][], PyWavelets.ArrayInfo, double[][], PyWavelets.ArrayInfo, PyWavelets.DiscreteWavelet, int, PyWavelets.Coefficient, PyWavelets.MODE, int, PyWavelets.DiscreteTransformType) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downheap(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
downsample(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
downSample(int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
downsample_2 - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT_cl_kernels
downsample_2x_3d - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Kernels
downsample2D(double[], int, int, double[], int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
downsample3D(double[], int, int, int, double[], int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
downsampled_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
downsampled_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
downSampleFactor - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
downSampleResolutions - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
downsampling_convolution(double[], int, double[], int, double[], int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downsampling_convolution_periodization(double[], int, double[], int, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
downSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
downSlice() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Decrements the current slice in local coordinates and returns the new position in the view-independent file coordinates.
downSlice() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Decrements the current slice in local coordinates and returns the new position in the view-independent file coordinates.
doWriteAsUnknownLength() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Whether the sequence should be written using an unknown length, can be set as a preference by user.
doWriteAsUnknownLength() - Method in class gov.nih.mipav.model.file.FileDicomSQItem: Whether the sequence should be written using an unknown length, can be set as a preference by user.
doX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
doXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
doXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
doY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
doZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
dp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry2
DP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
dpanel_bmod(int, int, int, int, double[], double[], int[], int[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dpanel_dfs(int, int, int, SuperLU.SuperMatrix, int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dparam(double[][], double[], double[][], double[][], double[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
DPARFN(int, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
dParseFloatFormat(byte[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dParseIntFormat(byte[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dpbsv(char, int, int, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations3
dpbtrf(char, int, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations3
dpColumnNames - Static variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Column names for data provenance
dpColumnNames - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Column names for data provenance
dpDialog - Variable in class gov.nih.mipav.view.ViewJFrameImage: Data provenance dialog
dpDialog - Variable in class gov.nih.mipav.view.ViewUserInterface: Dialog to display the mipav system data provenance
dpfun(double[], int, double[], double[], int[], int[], boolean[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
dph - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: phi (in degrees)
dpiScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
dpiScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
dPivotGrowth(int, SuperLU.SuperMatrix, int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dpivotL(int, double, boolean[], int[], int[], int[], int[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dplot(double[][], double[], double[][], double[], double[], double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
dpModel - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: The table model
dpocon(char, int, double[][], int, double, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPOCON.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2011.
dpoequ(int, double[][], int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations
dpofa(double[][], int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
dporfs(char, int, int, double[][], int, double[][], int, double[][], int, double[][], int, double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPORFS.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2011.
dposv(char, int, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPOSV.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2011.
Dposv(int, double[][], int, double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dposvx(char, char, int, int, double[][], int, double[][], int, char[], double[], double[][], int, double[][], int, double[], double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.1 DPOSVX.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., April, 2012.
dpot01(char, int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DPOT01.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dpot02(char, int, int, double[][], int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DPOT02.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dpot03(char, int, double[][], int, double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DPOT03.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dpot05(char, int, int, double[][], int, double[][], int, double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version test routine 3.4.0 DPOT05.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dpotf2(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DPOTF2 Original DPOTF2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dpotf2 computes the Cholesky factorization of a real symmetric positive definite matrix A.
dpotf2(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.2 DPOTF2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dpotrf(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the DPOTRF version 3.1 LAPACK routine Original DPOTRF created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dpotrf computes the Cholesky factorization of a real symmetric positive definite matrix A
dpotrf(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPOTRF.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2011.
dpotri(char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPOTRI.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dpotrs(char, int, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DPOTRS.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2011.
dPrint_CompCol_Matrix(String, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dPrint_Dense_Matrix(String, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dprint_lu_col(String, int, int, int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dprint_soln(int, int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dPrint_SuperNode_Matrix(String, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dPrintPerf(SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.mem_usage_t, double, double, double[], double[], char[], SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dpruneL(int, int[], int, int, int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dqage() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqage c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, general-purpose, c integrand examinator, globally adaptive, c gauss-kronrod c***author piessens,robert,appl. math.
dqage() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqage c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, general-purpose, c integrand examinator, globally adaptive, c gauss-kronrod c***author piessens,robert,appl. math.
DQAGE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Integral without singularities, discontinuities, or infinite bounds.
DQAGE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Integral without singularities, discontinuities, or infinite bounds.
dqagie(double, int, double) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the orginal FORTRAN code whose header is given below: c***begin prologue dqagie c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a1,h2a4a1 c***keywords automatic integrator, infinite intervals, c general-purpose, transformation, extrapolation, c globally adaptive c***author piessens,robert,appl. math & progr. div - k.u.leuven c de doncker,elise,appl. math & progr. div - k.u.leuven c***purpose the routine calculates an approximation result to a given c integral i = integral of f over (bound,+infinity) c or i = integral of f over (-infinity,bound) c or i = integral of f over (-infinity,+infinity), c hopefully satisfying following claim for accuracy c abs(i-result).le.max(epsabs,epsrel*abs(i)) c***description c c integration over infinite intervals c standard fortran subroutine
dqagie(DoubleDouble, int, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the orginal FORTRAN code whose header is given below: c***begin prologue dqagie c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a1,h2a4a1 c***keywords automatic integrator, infinite intervals, c general-purpose, transformation, extrapolation, c globally adaptive c***author piessens,robert,appl. math & progr. div - k.u.leuven c de doncker,elise,appl. math & progr. div - k.u.leuven c***purpose the routine calculates an approximation result to a given c integral i = integral of f over (bound,+infinity) c or i = integral of f over (-infinity,bound) c or i = integral of f over (-infinity,+infinity), c hopefully satisfying following claim for accuracy c abs(i-result).le.max(epsabs,epsrel*abs(i)) c***description c c integration over infinite intervals c standard fortran subroutine
DQAGIE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Integral over (bound, +infinity), (-infinity, bound), or (-infinity, +infinity).
DQAGIE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Integral over (bound, +infinity), (-infinity, bound), or (-infinity, +infinity).
dqagpe() - Method in class gov.nih.mipav.model.algorithms.Integration2: dqagpe.
dqagpe() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: dqagpe.
DQAGPE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Integral over (lower, upper) with user specified break points.
DQAGPE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Integral over (lower, upper) with user specified break points.
dqagse() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqagse c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, general-purpose, c (end point) singularities, extrapolation, c globally adaptive c***author piessens,robert,appl. math.
dqagse() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqagse c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, general-purpose, c (end point) singularities, extrapolation, c globally adaptive c***author piessens,robert,appl. math.
DQAGSE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Integral over (lower, upper) which can handle end point singularities.
DQAGSE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Integral over (lower, upper) which can handle end point singularities.
dqawce() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawce c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1,j4 c***keywords automatic integrator, special-purpose, c cauchy principal value, clenshaw-curtis method c***author piessens,robert,appl.
dqawce() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawce c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1,j4 c***keywords automatic integrator, special-purpose, c cauchy principal value, clenshaw-curtis method c***author piessens,robert,appl.
DQAWCE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Cauchy principal value
DQAWCE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Cauchy principal value
dqawfe() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawfe c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a1 c***keywords automatic integrator, special-purpose, c fourier integrals, c integration between zeros with dqawoe, c convergence acceleration with dqelg c***author piessens,robert,appl. math.
dqawfe() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawfe c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a1 c***keywords automatic integrator, special-purpose, c fourier integrals, c integration between zeros with dqawoe, c convergence acceleration with dqelg c***author piessens,robert,appl. math.
DQAWFE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Automatic integrator, special-purpose, fourier integrals
DQAWFE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Automatic integrator, special-purpose, fourier integrals
dqawoe(double, double, double, double, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawoe c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1 c***keywords automatic integrator, special-purpose, c integrand with oscillatory cos or sin factor, c clenshaw-curtis method, (end point) singularities, c extrapolation, globally adaptive c***author piessens,robert,appl. math.
dqawoe(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawoe c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1 c***keywords automatic integrator, special-purpose, c integrand with oscillatory cos or sin factor, c clenshaw-curtis method, (end point) singularities, c extrapolation, globally adaptive c***author piessens,robert,appl. math.
DQAWOE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Automatic integrator, integrand with oscillatory cosine or sine factor
DQAWOE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Automatic integrator, integrand with oscillatory cosine or sine factor
dqawse() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawse c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1 c***keywords automatic integrator, special-purpose, c algebraico-logarithmic end point singularities, c clenshaw-curtis method c***author piessens,robert,appl. math.
dqawse() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqawse c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1 c***keywords automatic integrator, special-purpose, c algebraico-logarithmic end point singularities, c clenshaw-curtis method c***author piessens,robert,appl. math.
DQAWSE - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Adaptive integrator for integrands with algebraic or logarithmic singularities at endpoints.
DQAWSE - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Adaptive integrator for integrands with algebraic or logarithmic singularities at endpoints.
dqc25c(double, double, double, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqc25c c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2,j4 c***keywords 25-point clenshaw-curtis integration c***author piessens,robert,appl. math.
dqc25c(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is the port of the original FORTRAN routine whose header is given below: c***begin prologue dqc25c c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2,j4 c***keywords 25-point clenshaw-curtis integration c***author piessens,robert,appl. math.
dqc25f(double, double, double, int, int, double[], double[], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqc25f c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2 c***keywords integration rules for functions with cos or sin c factor, clenshaw-curtis, gauss-kronrod c***author piessens,robert,appl. math.
dqc25f(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqc25f c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2 c***keywords integration rules for functions with cos or sin c factor, clenshaw-curtis, gauss-kronrod c***author piessens,robert,appl. math.
dqc25s(double, double, double[], double[], double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqc25s c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2 c***keywords 25-point clenshaw-curtis integration c***author piessens,robert,appl. math.
dqc25s(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqc25s c***date written 810101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a2 c***keywords 25-point clenshaw-curtis integration c***author piessens,robert,appl. math.
dqcheb(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqcheb c***refer to dqc25c,dqc25f,dqc25s c***routines called (none) c***revision date 830518 (yymmdd) c***keywords chebyshev series expansion, fast fourier transform c***author piessens,robert,appl. math.
dqcheb(DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqcheb c***refer to dqc25c,dqc25f,dqc25s c***routines called (none) c***revision date 830518 (yymmdd) c***keywords chebyshev series expansion, fast fourier transform c***author piessens,robert,appl. math.
dqelg(int[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqelg c***refer to dqagie,dqagoe,dqagpe,dqagse c***routines called d1mach c***revision date 830518 (yymmdd) c***keywords epsilon algorithm, convergence acceleration, c extrapolation c***author piessens,robert,appl. math.
dqelg(int[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqelg c***refer to dqagie,dqagoe,dqagpe,dqagse c***routines called d1mach c***revision date 830518 (yymmdd) c***keywords epsilon algorithm, convergence acceleration, c extrapolation c***author piessens,robert,appl. math.
dqext() - Method in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
dqk15(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: The is a port of the original FORTRAN whose header is given below: c***begin prologue dqk15 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 15-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk15(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: The is a port of the original FORTRAN whose header is given below: c***begin prologue dqk15 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 15-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK15 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK15 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqk15i(double, int, double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk15i c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a2,h2a4a2 c***keywords 15-point transformed gauss-kronrod rules c***author piessens,robert,appl. math.
dqk15i(DoubleDouble, int, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk15i c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a3a2,h2a4a2 c***keywords 15-point transformed gauss-kronrod rules c***author piessens,robert,appl. math.
dqk15w(double, double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This a a port of the original FORTRAN whose header is given below: c***begin prologue dqk15w c***date written 810101 (yymmdd) c***revision date 830518 (mmddyy) c***category no. h2a2a2 c***keywords 15-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk15w(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This a a port of the original FORTRAN whose header is given below: c***begin prologue dqk15w c***date written 810101 (yymmdd) c***revision date 830518 (mmddyy) c***category no. h2a2a2 c***keywords 15-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk21(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk21 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 21-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk21(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk21 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 21-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK21 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK21 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqk31(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk31 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 31-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk31(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN whose header is given below: c***begin prologue dqk31 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 31-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK31 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK31 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqk41(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk41 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 41-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk41(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk41 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 41-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK41 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK41 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqk51(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk51 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 51-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk51(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk51 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 51-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK51 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK51 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqk61(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk61 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 61-point gauss-kronrod rules c***author piessens,robert,appl. math.
dqk61(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqk61 c***date written 800101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a1a2 c***keywords 61-point gauss-kronrod rules c***author piessens,robert,appl. math.
DQK61 - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Gauss-Kronod quadrature rule
DQK61 - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gauss-Kronod quadrature rule
dqlt01(int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dqlt02(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dqlt03(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
dqmomo(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqmomo c***date written 820101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1,c3a2 c***keywords modified chebyshev moments c***author piessens,robert,appl. math.
dqmomo(DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqmomo c***date written 820101 (yymmdd) c***revision date 830518 (yymmdd) c***category no. h2a2a1,c3a2 c***keywords modified chebyshev moments c***author piessens,robert,appl. math.
dqng() - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqng c***date written 800101 (yymmdd) c***revision date 810101 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, smooth integrand, c non-adaptive, gauss-kronrod(patterson) c***author piessens,robert,appl. math.
dqng() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqng c***date written 800101 (yymmdd) c***revision date 810101 (yymmdd) c***category no. h2a1a1 c***keywords automatic integrator, smooth integrand, c non-adaptive, gauss-kronrod(patterson) c***author piessens,robert,appl. math.
DQNG - Static variable in class gov.nih.mipav.model.algorithms.Integration2: Non-adaptive integration.
DQNG - Static variable in class gov.nih.mipav.model.algorithms.Integration2EP: Non-adaptive integration.
dqpsrt(int, int, int[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqpsrt c***refer to dqage,dqagie,dqagpe,dqawse c***routines called (none) c***revision date 810101 (yymmdd) c***keywords sequential sorting c***author piessens,robert,appl. math.
dqpsrt(int, int, int[], DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: This is a port of the original FORTRAN routine whose header is given below: c***begin prologue dqpsrt c***refer to dqage,dqagie,dqagpe,dqawse c***routines called (none) c***revision date 810101 (yymmdd) c***keywords sequential sorting c***author piessens,robert,appl. math.
dqpt01(int, int, int, double[][], double[][], int, double[], int[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dqrt01(int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DQRT01.
dqrt02(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DQRT02.
dqrt03(int, int, int, double[][], double[][], double[][], double[][], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DQRT03.
dqrt11(int, int, double[][], int, double[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dqrt12(int, int, double[][], int, double[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
dqrt13(int, int, int, double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
dqrt14(char, int, int, int, double[][], int, double[][], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DQRT14.
dqrt15(int, int, int, int, int, double[][], int, double[][], int, double[], int[], double[], double[], int[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DQRt15.
dqrt16(char, int, int, int, double[][], int, double[][], int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DQRT16.
dqrt17(char, int, int, int, int, double[][], int, double[][], int, double[][], int, double[][]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DQRT17.
dqselect(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DQT - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Quantization Table segment identifier.
DQT - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DQT - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
dquad(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
dQuerySpace(SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.mem_usage_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dragBBpt - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: DOCUMENT ME!
dragButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
dragCenterPt - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: DOCUMENT ME!
draggingGlobal - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
dragPoint(ModelLUT) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Update the LUT view when drag the control points.
dragPoint(MouseEvent) - Method in interface gov.nih.mipav.view.HistoLUTParent: Handle the dragging of a transfer function point.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Placeholder.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Placeholder.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Drag a point on the Histo LUT to another value.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Placeholder.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Handle the dragging of a transfer function point.
dragPoint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Placeholder.
DRAPER24D - Variable in class gov.nih.mipav.model.algorithms.Lmmin
DRAPER24D - Variable in class gov.nih.mipav.model.algorithms.LsqFit
DRAPER24D - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
DRAPER24D - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
draw(int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
draw(int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
draw(VOIBase, float[], int[], int, Graphics, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the input VOI in the ViewJComponentEditImage
draw(Vector<double[][]>, Vector<double[][][]>, double[], Vector<double[]>, GaussianMixtureModelsIncompleteSamples.GMM, int, String, boolean, int, String, GaussianMixtureModelsIncompleteSamples.Background, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
draw_all_points() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
draw_all_points() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
draw_point(LIBSVM.svm_toy_frame.point) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
draw_point(svm_toy.point) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
draw3DVOIs(Graphics, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
drawArrow(VOIText, Graphics2D, int, int, int, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the VOIText arror on screen.
drawAxes(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Called from the display function.
drawAxes(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Called from the display function.
drawAxes(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by paintComponent().
drawAxisAccoutrements(Graphics2D) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Draw the histogram border and the stationary marker ticks (function point ticks are drawn in drawTransferFunctionHandleTicks(Graphics2D).
drawBackgroundSizeLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
drawBoundingRect(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Draws the cropping rectangle.
drawBrainSurfaceFlattenerPoint(Point3f, int[], int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Draws the point selected on the Mesh for the brainsurfaceFlattener.
drawCenterMark(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by paintComponent().
drawContour(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
drawContours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
drawCrosshairLines(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by drawCrosshairsXY().
drawCrosshairs(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Draws the crosshairs for this oriented tri-planar component.
drawCrosshairStubs(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by drawCrosshairs.
drawDijkstraEuclidianPath(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: drawPath draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawDijkstraEuclidianPath(TriMesh, TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: drawPath draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawDijkstraEuclidianPoint(Point3f, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
drawDijkstraEuclidianPoint(TriMesh, Vector3f, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
DrawEvolve(LseSegmenter, float[]) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: DOCUMENT ME!
DrawEvolve(LseSegmenter, float[]) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: DOCUMENT ME!
DrawEvolve2D(LseSegmenter) - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
DrawEvolve3D(LseSegmenter) - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
drawFallback(Graphics2D, float) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph: Fallback rendering path when OpenGL is not available.
DrawFastMarch(LseSegmenter, float[]) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: DOCUMENT ME!
DrawFastMarch(LseSegmenter, float[]) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: DOCUMENT ME!
DrawFastMarch2D(LseSegmenter) - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
DrawFastMarch3D(LseSegmenter) - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
drawGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Enables picking points and drawing the Geodesic curve on the surfaces.
drawGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Enables picking points and drawing the Geodesic curve on the surfaces.
drawGeodesicPath(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: drawPath draws the Geodesic path as a LineArray and adds it to the children of the m_kSmoothedGeodesicGroup object, it also draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawGeodesicPath(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: drawPath draws the Geodesic path as a LineArray and adds it to the children of the m_kSmoothedGeodesicGroup object, it also draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawGeodesicPoint(Point3f, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
drawGeodesicPoint(TriMesh, Vector3f, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
drawGeometricCenter(VOIBase, Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the geometric center on screen.
drawGradicules(Graphics, float, float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Draws the gradicules (the half-image lines which demarcate lengths in the image).
drawImages(int[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Note that alphaBlending is applied with 1 component taken as zero if both components are not present -for example, if either imageA or imageB but not both has red, then the red component is alphaBlended with zero.
drawImageText(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Draws text onto the image, such as the slice number.
drawingElement - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
drawingHeight - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
drawingPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Associate structure of the scroll pane to resize the panel properly.
DrawingPane() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.DrawingPane
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelSculptor.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoLUT.DrawingPanel: Deprecated.
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoRGB.DrawingPanel: Deprecated.
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM.DrawingPanel
DrawingPanel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.DrawingPanel
drawingWidth - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
drawLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Geodesic line draw control label.
drawLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Geodesic line draw control label.
drawLabels() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Draws the Z box, the X bar and the Y bar:.
drawLast(Graphics) - Method in class gov.nih.mipav.view.Rubberband: Draws the appropriate geometric shape at the last rubberband location.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandEllipse: Draws an arc based on the rubberband's last bounds.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandLine: Draws a line based on the rubberband's last bounds.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandLivewire: Draws a line based on the rubberband's last bounds.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandPolyline: Draws a line based on the rubberband's last bounds.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandProtractor: Draws a line based on the rubberband's last bounds.
drawLast(Graphics) - Method in class gov.nih.mipav.view.RubberbandRectangle: Draws a rectangle based on the rubberband's last bounds.
drawLength(Graphics, VOIBase, float[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws length of the open contour.
drawLine(int, int, int, double[], float, Vector<Point3D>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
drawLine(int, int, int, float[], float, Vector<Point3D>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
drawLine(Graphics, int, int) - Method in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
drawLine(Graphics, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentGraph
DrawLine(int[], int[], int[], int[], double[], boolean, ModelSimpleImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Draw lines
drawMode - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
drawModeCheckBox - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
drawModeLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
drawNarrowBand(JDialogProstateSegmentationRegBSpline3D.Edge, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Draw the narrow band region.
drawNext(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the livewire from the last anchor point to the current mouse position.
drawNext(Graphics) - Method in class gov.nih.mipav.view.Rubberband: Draws the appropriate geometric shape at the next rubberband location.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandEllipse: Draws an arc based on the rubberband's bounds.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandLine: Draws a line based on the rubberband's present bounds.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandLivewire: Draws a line by following the graph from the current location back to the anchor point.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandPolyline: Draws a line based on the rubberband's bounds.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandProtractor: Draws a line based on the rubberband's present bounds.
drawNext(Graphics) - Method in class gov.nih.mipav.view.RubberbandRectangle: Draws a rectangle based on the rubberband's bounds.
drawNextPolyline(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the open contour from the last anchor point to the current mouse point.
drawPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Scroll panel reference.
drawPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Scroll panel reference.
drawPath(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: drawPath draws the Geodesic path as a LineArray and adds it to the children of the m_kSmoothedGeodesicGroup object, it also draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawPath(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: drawPath draws the Geodesic path as a LineArray and adds it to the children of the m_kSmoothedGeodesicGroup object, it also draws the Dijkstra path and Euclidian paths and adds them to the corresponding m_kDijkstraGeodesicGroup and m_kEuclidianGeodesicGroups.
drawPicked(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Draw the user-selected point, either as a sphere on the triangle mesh, or as a black triangle, depending on which picking is enabled:
drawPicked(Point3f, int[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Draw the user-selected point, either as a sphere on the triangle mesh, or as a black triangle, depending on which picking is enabled:
drawPoint(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Draw the user-selected point as a sphere on the triangle mesh:
drawPoint(Point3f, int[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Draw the user-selected point as a sphere on the triangle mesh:
drawPoint(Point3f, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
drawPoint(TriMesh, Vector3f, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Draw the user-selected point as a sphere on the triangle mesh, the sphere is added to all three drawing groups: m_kSmoothedGeodesicGroup, m_kDijkstraGeodesicGroup, and m_kEuclidianGeodesicGroup.
drawRectangleArea() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Draw rectangle shape object.
drawRectangleArea() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Draw rectangle shape object.
drawRFAPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Given a point in FileCoordinates, transform the point to local PatientCoordinates, and draw with a red sphere:
drawRFAPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Called from the parent class when the Probe Entry Point is selected in the PlaneRender object.
drawRFAPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Called from the parent class when the Probe Entry Point is selected in the PlaneRender object.
drawRFAPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Called from the PlaneRender class when a new Probe Entry Point has been selected.
drawRotatedVerticalAxisLabel(Graphics2D) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
drawScale(Graphics2D, Double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame.GPanel
drawSculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: drawSculptRegion: called when the "Draw Sculpt Outline" Button is pressed.
drawSculptRegion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: drawSculptRegion: called when the "Draw Sculpt Outline" Button is pressed.
drawSelectedPoint(VOIPoint, Renderer, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawSelectedPoints(VOIBase, Renderer, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawShape - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Shape of the drawing rectangle.
drawShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Shape of the drawing rectangle.
drawSphere(int, float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Draw the red sphere with the given coordinate.
drawString(Graphics, String, int, int) - Method in class gov.nih.mipav.view.ViewJComponentGraph
drawString(Graphics, String, int, int) - Method in class gov.nih.mipav.view.ViewJComponentLUTTable: Draw the string with the given position.
drawStringBW(String, Graphics, int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Draws a white character on a black surround.
drawTalairachGrid_AXIAL(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by paintComponent().
drawTalairachGrid_CORONAL(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by paintComponent().
drawTalairachGrid_SAGITTAL(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Convenience method called by paintComponent().
drawText(int, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
drawText(GLAutoDrawable, int, int, ColorRGBA, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawText(GLAutoDrawable, Renderer, int, int, ColorRGBA, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawTickMarks(VOIBase, Graphics, int[], int, int, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the tick marks for the VOIProtractor
drawTickMarks(VOIBase, Graphics, Color, int[], int, int, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the tick marks on the VOILine.
drawTransferFunctionHandles(Graphics2D, TransferFunction) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Draw the transfer function handles (the little squares used to drag points).
drawTransferFunctionHandleTicks(Graphics2D, TransferFunction) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: This method draws the transfer function handle marks on the axes of the histogram.
drawTransferFunctionLine(Graphics2D, TransferFunction, Color) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: This method draws the transfer function line.
drawTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Draw the user-selected triangle as a black triangle, save the original color so it can be restored:
drawTriangle(Point3f, int[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Draw the user-selected triangle as a black triangle, save the original color so it can be restored:
drawVersionString(Graphics) - Method in class gov.nih.mipav.view.ViewSplashScreen: Get the version string and draw it on the image.
drawVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
drawVOI(GLAutoDrawable, VOIBase, PlaneRender_WM, Renderer, Culler, float[], int[], int[], Vector3f, int, int, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOI(VOIBase, float[], int[], Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the VOI Contour (open or closed).
drawVOI(VOIBase, VolumeTriPlanarRenderBase, VolumeImage, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
drawVOIContour(GLAutoDrawable, Renderer, int, float[], int[], VOIBase, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOILine(GLAutoDrawable, VOIBase, Renderer, float[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOILine(GLAutoDrawable, VOIBase, Renderer, int, float[], int[], VolumeVOI, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOILine(VOIBase, float[], int[], Graphics, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the VOILine.
drawVOIPoint(GLAutoDrawable, VOIBase, Renderer, int, VolumeVOI, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIPoint(GLAutoDrawable, VOIPoint, Renderer, VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIPoint(VOIPoint, Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the input VOIPoint.
drawVOIPoint(VOIPoint, Graphics, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draw the input VOIPoint with the input label.
drawVOIPolyLineSlice(GLAutoDrawable, VOIPolyLineSlice, Renderer, int, float[], int[], VolumeVOI, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIPolyLineSlice(VOIPolyLineSlice, float[], int[], Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the input VOIPolyLineSlice.
drawVOIProtractor(GLAutoDrawable, VOIBase, Renderer, int, float[], int[], VolumeVOI, Vector3f, Vector3f, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIProtractor(VOIBase, float[], int[], Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the input VOIProtractor.
drawVOIProtractorAngle(GLAutoDrawable, VOIBase, Renderer, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIProtractorLength(GLAutoDrawable, VOIBase, Renderer, float[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIs - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Flag used to prohibit VOI drawing.
drawVOIs(GLAutoDrawable, VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIText(GLAutoDrawable, VOIBase, Renderer, int, VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIText(GLAutoDrawable, VOIText, Renderer, VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
drawVOIText(VOIText, Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Draws the input VOIText.
drawWithNbh(double[][], int[][], GaussianMixtureModelsIncompleteSamples.GMM, int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
drawWithoutReplacementFisherYates(Vector<Integer>, Random, int, Vector<Integer>, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
drawWithoutReplacementSimple(Vector<Integer>, Random, int, Vector<Integer>, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
drawWithoutReplacementSkip(Vector<Integer>, Random, int, Vector<Integer>, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
drawWithoutReplacementWeighted(Vector<Integer>, Random, int, int, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
drawWithoutReplacementWeighted(Vector<Integer>, Random, Vector<Integer>, int, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
dreadhb(RandomAccessFile, int[], int[], int[], double[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dreadMM(RandomAccessFile, int[], int[], int[], double[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dreadrhs(int, double[]) - Static method in class gov.nih.mipav.model.structures.jama.SuperLU
dReadValues(RandomAccessFile, int, double[], int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dreal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
dreal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
drecursiveCalc(int, int) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Starts the Gaussian calculation.
DREGR1(char, int, int, int, int, int, double, double[][], int, double[], int, double, double[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DRI - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Define Restart Interval segment identifier.
DRI - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
DRI - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
DRIVE0() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
DRIVE1() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelI0NuclearArea: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAll: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllEP: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitExponential: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitGaussian: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLaplace: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLine: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLorentz: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitMultiExponential: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitRayleigh: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1Fitting: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2Fitting: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFitting: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFitting: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculation: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.FitExponential: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.InverseLaplace: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.InverseLaplace2: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.Lmmin: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.LsqFit
driver() - Method in class gov.nih.mipav.model.algorithms.NelderMead
driver() - Method in class gov.nih.mipav.model.algorithms.NESolve
driver() - Method in class gov.nih.mipav.model.algorithms.NL2sol
driver() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: driver.
driver() - Method in class gov.nih.mipav.model.algorithms.NMSimplex
driver() - Method in class gov.nih.mipav.model.algorithms.ODE
driver() - Method in class gov.nih.mipav.model.algorithms.ODEEP
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel: DOCUMENT ME!
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping.qaws
driver() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction2param: Starts the analysis.
driver() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction3param: Starts the analysis.
driver1() - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
driver2() - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
driver3() - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
driverCalls() - Method in class gov.nih.mipav.model.algorithms.NESolve
driverCalls() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
driverCalls() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
drop(DropTargetDropEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJListTarget: DOCUMENT ME!
drop(DropTargetDropEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJTreeTarget: DOCUMENT ME!
DROP_AREA - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_AREA - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DROP_BASIC - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_BASIC - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DROP_COLUMN - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_COLUMN - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
drop_consume_input(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
DROP_CONSUME_INPUT - Static variable in class gov.nih.mipav.model.file.libjpeg
DROP_DYNAMIC - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_DYNAMIC - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DROP_INTERP - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_INTERP - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DROP_PROWS - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_PROWS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
DROP_SECONDARY - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
DROP_SECONDARY - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
drop_start_input_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
DROP_START_INPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
dropDownSamplePermuted(int, int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
DropJListTarget() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJListTarget
DropJTreeTarget() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJTreeTarget
Dropper(Vector3f, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect: Reads the surface color from the texture map at the given location.
Dropper(PickRecord, ColorRGBA, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Paint can support.
Dropper(PickRecord, ColorRGBA, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
DROPPER_PAINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: This mode is an active VOI mode used by the VOI Handler
dropperPaintToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Toggle buttons for voi/points
dropSource - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
drot(int, double[], int, double[], int, double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 3/11/78 linpack routine drot Original code written by Jack Dongarra.
drot_(int, double[], int, double[], int, double, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DROUNDUP_LWORK(int) - Method in class gov.nih.mipav.model.structures.jama.SVD
DRR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: View Mode DRR Constant:
DRRMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Invoke the DRR rendering mode.
DRRMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Display the volume in DDR mode.
DRRMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Change to the DDR mode pixel shader program.
DRRMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
DRRMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Display the volume in DDR mode.
drscl(int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.2 LAPACK auxiliary routine DRSCL. -- LAPACK is a software package provided by Univ. of Tennessee, -- -- Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd..-- November 2006 ..
ds - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ds - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_cen_r
DS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
dsaitr(int[], String, int, int, int, int, double[], double[], double[][], int, double[][], int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_first - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_ierr - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_ipj - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_irj - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_iter - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_itry - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_ivj - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_j - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_msglvl - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_orth1 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_orth2 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_rnorm1 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_rstart - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_safmin - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_step3 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_step4 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaitr_wnorm - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
dsapps(int, int, int, double[], double[][], int, double[][], int, double[], double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsapps_epsmch - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsapps_first - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2(int[], String, int, String, int[], int[], double[], double[], int, int, int, int[], double[][], int, double[][], int, double[], double[], double[][], int, double[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_cnorm - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_eps23 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_getv0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_initv - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_iter - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_kplusp - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_msglvl - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_nconv - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_nev0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_np0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_rnorm - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_update - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaup2_ushift - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd(int[], String, int, String, int, double[], double[], int, double[][], int, int[], int[], double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_bounds - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ierr - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ih - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_iq - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ishift - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_iupd - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_iw - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ldh - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ldq - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_mode - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_msglvl - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_mxiter - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_nb - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_nev0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_next - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_np - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsaupd_ritz - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsc - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: DOCUMENT ME!
DSC_mri_aif() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_cbf() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_cbv() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_cbv_lc() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_conc() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_core() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_cSVD() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_fwhm() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_mask() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_mtt() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_oSVD() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_S0() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_slice_selection_figure() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_mri_SVD() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_MRI_toolbox - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_MRI_toolbox(double[][][][], double, double, int, String) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_MRI_toolbox(ModelImage, String, double, double, int, String[]) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
DSC_MRI_toolbox.diffGaussians - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gauss1Fitting - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gauss1FittingCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gauss2Fitting - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gauss2FittingCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gaussSecondStandardDeviationFittingCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gaussStandardDeviationFitting - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.gaussStandardDeviationFittingCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.GVFitting - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.GVFittingCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.GVRecirculation - Class in gov.nih.mipav.model.algorithms
DSC_MRI_toolbox.GVRecirculationCostFunction - Class in gov.nih.mipav.model.algorithms
DSC_mri_ttp() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
dscal(int, double, double[], int) - Method in class gov.nih.mipav.model.algorithms.LSQR
dscal(int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Routine ported from 12/3/93 linpack dscal Original version written by Jack Dongarra Scales a vector by a constant.
dscal_(int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
DSCDATA(int, int[], int[], double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dscfun - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DSCFUN(int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dsconv(int, double[], double[], double, int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
DSCPRINT(int, int, double[], double, double[][], double[][], double[], double[], double, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DSCSOLV(double, int, int, int, double[], double[], double[][], double[][], double[], double[], double[][], double[][], double[], double[], int, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
DSCTEST(int, int, double, double[], double[][], double[][], double[][], double[][], double[], double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
dsdrv1() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsdrv2() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsdrv3() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsdrv4() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsdrv5() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsdrv6() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
DSDT(double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
dseigt(double, int, double[][], int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsesrt(String, boolean, int, double[], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dSetRWork(int, int, double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dSetupSpace(double[], int, SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dseupd(boolean, String, boolean[], double[], double[][], int, double, String, int, String, int, double, double[], int, double[][], int, int[], int[], double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsgets(int, String, int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsgt01(int, char, int, int, double[][], int, double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK test routine DSGT01 Original DSGT01 created by Univ. of Tennessee, Univ.
dsigma0 - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < k-smoothing
dsigmas - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian
dsign(double, double) - Method in class gov.nih.mipav.model.algorithms.ODE
dsign(DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.ODEEP
dsm - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
dsnode_bmod(int, int, int, double[], double[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dsnode_dfs(int, int, int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dsortr(String, boolean, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dssimp() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
DSTATE_BUFIMAGE - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_BUFPOST - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_INHEADER - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_PRELOAD - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_PRESCAN - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_RAW_OK - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_RDCOEFS - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_READY - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_SCANNING - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_START - Static variable in class gov.nih.mipav.model.file.libjpeg
DSTATE_STOPPING - Static variable in class gov.nih.mipav.model.file.libjpeg
dstats() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dstdnorm(double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
dstebz(char, char, int, double, double, int, int, double, double[], double[], int[], int[], double[], int[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.3.1 LAPACK routine DSTEBZ.
dstech(int, double[], double[], double[], double, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DSTECH Original DSTECH created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 Let T be the tridiagonal matrix with diagonal entries A[0] ,..., A[n-1] and offdiagonal entries B[0] ,..., B[n-2]). dstech checks to see if eig[0], ..., eig[n-1] are indeed accurate eigenvalues of T.
dstect(int, double[], double[], double, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DSTECT Original DSTECT created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dstect counts the number num of eigenvalues of a tridiagonal matrix T which are less than or equal to shift.
dstein(int, double[], double[], int, double[], int[], int[], double[][], int, double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of version 3.2 LAPACK routine DSTEIN.
dstemr(char, char, int, double[], double[], double, double, int, int, int[], double[], double[][], int, int, int[], boolean[], double[], int, int[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of version 3.4.0 LAPACK routine dstemr.
dsteqr(char, int, double[], double[], double[][], int, double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DSTEQR Original DSTEQR created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsteqr computes all eigenvalues and, optionally, eigenvectors of a symmetric tridiagonal matrix using the implicit QL or QR method.
dsterf(int, double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DSTERF Original DSTERF created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsterf computes all the eigenvalues of a symmetric tridiagonal matrix using the Pal-Walker-Kahan variant of the QL or QR algorithm.
dstIndex - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
dstinv(double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
dstqrb(int, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dstsub(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
dstt21(int, int, double[], double[], double[], double[], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DSTT21 Original DSTT21 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dstt21 checks a decomposition of the form A = U S U' where ' means transpose, A is symmetric tridiagonal, U is orthogonal, and S is diagonal (if kband == 0) or symmetric tridagonal (if kband == 1).
dstt22(int, int, int, double[], double[], double[], double[], double[][], int, double[][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2
DSTYPE_DATAPRESENT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
DSTYPE_NODATAPRESENT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
dstzr(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
dsubs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
dsvd() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
dsvdch(int, double[], double[], double[], double, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DSVDCH.
dsvdct(int, double[], double[], double, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: This is a port of version 3.1 LAPACK test routine DSVDCT.
dswap_(int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dsxt1(int, double[], int, double[], int, double, double, double) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is the port of version 3.1 LAPACK test routine DSXT1.
dsyev(char, char, int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK DSYEV routine Original DSYEV created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsyev computes all eigenvalues and, optionally, eigenvectors of a real symmetric matrix A.
Dsyev(int, double[][], double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Call the lapack routine
Dsyev(int, double[][], double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: Call lapack routine
Dsyev(int, double[][], double[], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
dsyevr(char, char, char, int, double[][], int, double, double, int, int, double, int[], double[], double[][], int, int[], double[], int, int[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2: This is a port of the version 3.2.2 LAPACK DSYEVR routine.
dsyevx(char, char, char, int, double[][], int, double, double, int, int, double, int[], double[], double[][], int, double[], int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is a port of the version 3.2 LAPACK DSYEVX routine.
dsygs2(int, char, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the LAPACK version 3.1 DSYGS2 routine Original DSYGS2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 DSYGS2 reduces a real symmetric-definite generalized eigenproblem to standard form.
dsygst(int, char, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is a port of the version 3.1 LAPACK routine DSYGST Original DSYGST created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsygst reduces a real symmetric-definite generalized eigenproblem to standard form.
dsygv(int, char, char, int, double[][], int, double[][], int, double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DYSGV is ported from the version 3.1 LAPACK driver routine Original DSYGV created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 DSYGV computes all the eigenvalues, and optionally, the eigenvectors of a real generalized symmetric-definite eigenproblem, of the form A*x = (lambda)*B*x, A*Bx = (lambda)*x, or B*A*x = (lambda)*x.
dsygv_test() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This routine is an extraction from the FORTRAN program version 3.1.1 DCHKEE of the code needed to drive ddrvsg in order to test DSYGV, that handles the symmetric generalized eigenvalue problem.
dsygv_test2() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
dsygv_test3(ViewUserInterface) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
dsymm(char, char, int, int, double, double[][], int, double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 2/8/89 Blas routine DSYMM Original version written by: Jack Dongarra, Argonne National Lab.
dsymv(char, int, double, double[][], int, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 10/22/86 Blas routine DSYMV Original code written by: Jack Dongarra, Argonne Nationa Lab.
dsymv_(char, int, double, double[], int, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dsyr(char, int, double, double[], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of level 2 Blas routine DSYR Original routine written on 22-October-1986 by Jack Dongarra, Argonne National Lab.
dsyr2(char, int, double, double[], int, double[], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Port of 10/22/86 Blas DSYR2 routine Original version written by: Jack Dongarra, Argonne National Lab.
dsyr2_(char, int, double, double[], int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dsyr2k(char, char, int, int, double, double[][], int, double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 2/8/89 Blas routine DSYR2K Original version written by: Jack Dongarra, Argonne National Lab.
dsyrk(char, char, int, int, double, double[][], int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: dsyrk is the port of the 2/8/89 blas DSYRK routine.
dsyt21(int, char, int, int, double[][], int, double[], double[], double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK test routine DSYT21 Original DSYT21 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsyt21 generally checks a decomposition of the form A = U S U' where ' means transpose, A is symmetric, U is orthogonal, and S is diagonal (if kband == 0) or symmetric tridiagonal (if kband == 1).
dsyt22(int, char, int, int, int, double[][], int, double[], double[], double[][], int, double[][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue: This is the port of version 3.1 LAPACK test routine DORT01.
dsytd2(char, int, double[][], int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DSYTD2 Original DSYTD2 created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsytd2 reduces a real symmetric matrix A to symmetric tridiagonal form T by an orthogonal similarity transformation: Q' * A * Q = T.
dsytrd(char, int, double[][], int, double[], double[], double[], double[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the version 3.1 LAPACK routine DSYTRD Original DSYTRD created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dsytrd reduces a real symmetric matrix A to a real symmetric tridiagonal form T by an orthogonal similarity transformation.
dt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
dt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
dt - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
dt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
DT - gov.nih.mipav.model.file.FileDicomTagInfo.VR
DT_2FLOAT - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 2-byte float - Intel style.
DT_2INTEGERI - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 2-byte integer - Intel style.
DT_2INTEGERI - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 2-byte integer - Intel style.
DT_2INTEGERS - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 2-byte integer - Sun style.
DT_2INTEGERS - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 2-byte integer - Sun style.
DT_4FLOAT - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 4-byte float - Sun style.
DT_4FLOATI - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 4-byte float - Intel style.
DT_4FLOATS - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 4-byte float - Sun style.
DT_4INTEGERI - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 4-byte integer - Intel style.
DT_4INTEGERI - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 4-byte integer - Intel style.
DT_4INTEGERS - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate 4-byte integer - Sun style.
DT_4INTEGERS - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate 4-byte integer - Sun style.
DT_ALL - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate _ALL_ image data type.
DT_ALL - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_BINARY - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate binary (1 bit) image data type.
DT_BINARY - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Binary (1 bit/voxel)
DT_BINARY - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_BINARY - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_BYTE - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate Byte (8-bits) data type
DT_BYTE - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_BYTE - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate Byte (8-bits) data type
DT_BYTE - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_COMPLEX - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate complex (64 bit) image data type.
DT_COMPLEX - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_COMPLEX - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
dt_double - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
DT_DOUBLE - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate double (64 bit) image data type.
DT_DOUBLE - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_DOUBLE - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_FLOAT - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate float (32 bit) image data type.
DT_FLOAT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_FLOAT - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
dt_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
DT_NONE - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate no image data type.
DT_NONE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unspecified original unscaled source data type
DT_NONE - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_NONE - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_RGB - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate color (RGB - 24 bits) image data type.
DT_RGB - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_RGB - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_SIGNED_INT - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate integer (32 bit) image data type.
DT_SIGNED_INT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_SIGNED_INT - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_SIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate short (16 bit) image data type.
DT_SIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_SIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: AAnalyze file format define use to indicate undefined image data type.
DT_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unknown original unscaled source data type
DT_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText file format define use to indicate undefined image data type.
DT_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileSiemensText: SiemensText file format define use to indicate undefined image data type.
DT_UNSIGNED_CHAR - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate unsigned byte (char) (8 bit) image data type.
DT_UNSIGNED_CHAR - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_UNSIGNED_CHAR - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_UNSIGNED_INT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_UNSIGNED_INT - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
DT_UNSIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze file format define use to indicate short (16 bit) image data type.
DT_UNSIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
DT_UNSIGNED_SHORT - Static variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
dtComponent - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
dtComponentArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
dtest_csh() - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
dtgevc(char, char, boolean[], int, double[][], int, double[][], int, double[][], int, double[][], int, int, int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of version 3.1 LAPACK routine DTGEVC Original DTGEVC created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., November, 2006 dtgevc computes some or all of the right and/or left eigenvectors of a pair of real eigenvectors of a pair of real matrices (S,P), where S is a quasi-triangular matrix and P is upper triangular.
dthetaonsigma - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
dthetaonsigma - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
dti - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
DTI - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Diffusion Tensor image.
DTI - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Tensor Image dialog:
DTIColorDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
DTIColorDisplay(boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Constructor
DTIGradTableCorrectionAfterTrans - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: The DTI gradient table correction after transformation algorithm corrects gradients after their corresponding DWI volumes have been registered using OAR35D to a B0 image.
DTIGradTableCorrectionAfterTrans(float[][], float[], TransMatrix[], int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
dtiParameters - Variable in class gov.nih.mipav.model.structures.ModelImage: Reference to DWI bvalue and gradient information.
DTIParameters - Class in gov.nih.mipav.model.file: Object to store parameters in the ModelImage acquired from DWI image file or ImageInfo DTI tab
DTIParameters(int) - Constructor for class gov.nih.mipav.model.file.DTIParameters
DTIParameters(DTIParameters) - Constructor for class gov.nih.mipav.model.file.DTIParameters: Copy constructor, copies the entire input DTIParameters into this DTIParameters object.
DTIParametersPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
dtiparams - Variable in class gov.nih.mipav.model.file.FileImageXML
dtiparams - Variable in class gov.nih.mipav.model.file.FileIO
dtiparams - Variable in class gov.nih.mipav.model.file.FilePARREC: Object to save DWI paramters to
dtiparams - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
dtiparams - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
dtiParams - Variable in class gov.nih.mipav.model.file.FileBRUKER
DTIparamsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
DTIPipeline - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
DTIPipeline() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
DTIPreprocessing - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
dtiStudioButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: Radio button to save gradBval text file in DTIStudio format
dtj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjblank - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_etaj_init - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_iA2 - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_LF - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Lt - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_LtGt - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_phij_init - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Phij_init - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Psij_init - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_foo - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_Ft - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_GtC2 - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_Ht - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_Jt - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_logdet - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Q_Wt - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_Szero - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtjsa_varphij_init - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
dtm - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
dtoler - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
dtopt - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex
DtpntMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.DtpntMemRec
dtpp_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
DTPP_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
dtrmm(char, char, char, char, int, int, double, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 2/8/89 Blas routine DTRMM Original code written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.
dtrmv(char, char, char, int, double[][], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 10/22/86 blas routine DTRMV Original version written by: Jack Dongarra, Argonne National Lab.
dtrsl(double[][], int, int, double[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
dtrsm(char, char, char, char, int, int, double, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 2/8/89 Blas routine DTRSM Original code written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.
dtrsm(char, char, char, char, int, int, double, double[][], int, double[][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU: This is a port of the 2/8/89 Blas routine DTRSM Original code written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.
dtrsv(char, char, char, int, double[][], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of the 10/22/86 Blas routine DTRSV Original version written by: Jack Dongarra, Argonne National Lab.
dtrsv_(char, char, char, int, double[], int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dtrti2(char, char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.2 DTRTI2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., September 2012.
dtrtri(char, char, int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations: This is a port of LAPACK version routine 3.4.0 DTRTRI.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., November 2011.
dtrtrs(char, char, char, int, int, double[][], int, double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
Dtype - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix
Dtype_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t
DUAL_THRESHOLD - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Dual threshold function.
DUAL_THRESHOLD_INV - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Inverse dual threshold function.
Dual_TVL1_optic_flow(double[], double[], double[], double[], int, int, double, double, double, int, double, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the optical flow in one scale
Dual_TVL1_optic_flow_multiscale(double[], double[], double[], double[], int, int, double, double, double, int, double, int, double, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the optical flow using multiple scales
dualAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
dualContoursFinding(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
DualDividerLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
dualImage - Variable in class gov.nih.mipav.view.JFrameHistogram: set to true when the lut interface contains two images (imageA and imageB)
dualImagePane - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: dual image pane that holds the left and right panel.
dualImagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The image panel to hold two Canvas3D.
dualityGap - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Dual loss value.
dualLeftPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Left panel of the dual panel view.
dualLoss - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Dual objective value.
dualObjective - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Loss value.
dualPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: For displaying the BrainSurfaceFlattener or Flythrough renderers.
DUALPANEL - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
dualRightPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Right panel of the dual panel view.
dualThresholdMode(int) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Switch the histogram component to (inverse or regular) dual threshold mode.
dualThresholdMode(int) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Switch the histogram component to (inverse or regular) dual threshold mode.
dualThresholdMode(int) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Switch the histogram component to (inverse or regular) dual threshold mode.
DuckyDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory
DuckyReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.DuckyReader
DUFFINGS - Variable in class gov.nih.mipav.model.algorithms.ODE
DUFFINGS - Variable in class gov.nih.mipav.model.algorithms.ODEEP
DUFFINGS_WITH_DAMPING_AND_FORCING - Variable in class gov.nih.mipav.model.algorithms.ODE
DUFFINGS_WITH_DAMPING_AND_FORCING - Variable in class gov.nih.mipav.model.algorithms.ODEEP
dummy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Dummy initial values used to create a ELSUNC algorithm instance before setting initial.
dummy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Dummy initial values used to create a Powell's algorithm instance before setting initial.
dummy - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
dummy - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
dummy_consume_data(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
DUMMY_CONSUME_DATA - Static variable in class gov.nih.mipav.model.file.libjpeg
DummyCostFunction(int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction
DummyCostFunction(int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction
DummyCostFunction2(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction2
DummyCostFunction3(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
DummyCostFunction3(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
DummyCostFunction3(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
DummyCostFunction4(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction4
dummyQE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
dummyv1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
dummyv2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
dummyv3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
dummyv4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
dump() - Method in class gov.nih.mipav.util.DoubleDouble: Dumps the components of this number to a string.
dump(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
dump(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
Dump(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Debug method that provides a human readable file dump of the object data.
dump_filename_base - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyPerSolveOptions
dump_format_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyPerSolveOptions
DumpFormatType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.DumpFormatType
DumpLinearLeastSquaresProblem(String, CeresSolver.DumpFormatType, CeresSolver.SparseMatrix, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
DumpLinearLeastSquaresProblemToConsole(CeresSolver.SparseMatrix, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
DumpLinearLeastSquaresProblemToTextFile(String, CeresSolver.SparseMatrix, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
dumpMatSize(libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
DumpModelDoc(Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Write additional documentation output.
DumpPCA(Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Dumps the PC scores of the shape, texture and combined PCA.
dumpPlan(OutputStream) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan: Dump the planner result to the output stream.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel: Display results of displaying OAR3DConstrained fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting: Display results of kFitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel: Display results of displaying DEMRI3 fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel: Display results of displaying OAR2D fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel: Display results of displaying OAR2D fitting parameter.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel: Display results of displaying OAR3D fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel: Display results of displaying OAR3D fitting parameter.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel: Display results of displaying pure 1D fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel: Display results of displaying pure 1D no whole organ normalization fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel: Display results of displaying exponential fitting parameters in the case of no whole organ normalization.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAll: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllEP: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModel: Display results of displaying SM2 fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC: Display results of displaying SM2 fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel: Display results of displaying SM2 fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitExponential: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitGaussian: Display results of displaying Gaussian fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLaplace: Display results of displaying Laplace fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLine: Display results of displaying line fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLorentz: Display results of displaying Lorentz fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitMultiExponential: Display results of displaying multiExponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitRayleigh: Display results of displaying Rayleigh fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1Fitting: Display results of gauss 1 curve Fitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2Fitting: Display results of gauss 2 curve Fitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFitting: Display results of gaussStandardDeviationFitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFitting: Display results of gammma-variate curve Fitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculation: Display results of GV recirculation curve Fitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.Lmmin
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP: Display results of displaying exponential fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel: Display results of displaying SM2 fitting parameters.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction2param: Display results of WeibullDistributionFitting.
dumpResults() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction3param: Display results of WeibullDistributionFitting.
dumpTestResults() - Method in class gov.nih.mipav.model.algorithms.LsqFit
dumpTestResults() - Method in class gov.nih.mipav.model.algorithms.NESolve
dumpTestResults() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
dumpTestResults() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
dupdat(double[], int[], double[][], int, int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
DUPLEX_DOPPLER - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality duplex doppler.
DUPLEX_DOPPLER - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality duplex doppler.
dur - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker
durTime - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
dusolve(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dValueTables - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
dValueTables - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
DWI - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Weighted Images dialog:
DWIButtonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
DWIDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
DWIframe - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
DWIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: Diffusion weighted image read from file or from active image.
DWIJonesKirbyDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
dwiLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: dwi data label
DWINewB0Image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: Registered images, results from pre-processing tab:
DWIOpenPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
dwiPathBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: browse button for dwi file/folder
dwiPathTextField - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: handle to dwi data textfield of main dialog
dwiPathTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: path to dwi file/dir
DWITransPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
DWMRI_B_VALUE - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: "DWMRI_b-value:=b " : This key/value pair gives the (scalar) diffusion-weighting value, in units of s/mm^2.
dwmriGradient - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: For every index position NNNN along the DWI axis (whichever is the non-spatial axis identified by the "list" or "vector" kind field), either "DWMRI_gradient_NNNN:=x y z " or "DWMRI_B-matrix_NNNN:=xx xy xz yy yz zz " must be given (except if "DWMRI_NEX_NNNN:= M " is used).
dwmriGradient - Variable in class gov.nih.mipav.model.file.FileNRRD: "modality:=DWMRI" : This key/value pair explicitly indicates that the image is a diffusion-weighted MRI scan, and it implies that all of the following key/value pairs are also set in the header: "DWMRI_b-value:=b " : This key/value pair gives the (scalar) diffusion-weighting value, in units of s/mm^2.
dwmriNex - Variable in class gov.nih.mipav.model.file.FileNRRD: "DWMRI_NEX_NNNN:=M " means that the information provided for image NNNN (either gradient or B-matrix) is the same as for image NNNN+1, NNNN+2, up to and including NNNN+M-1.
dwt(double[][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt(double[][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt(double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_axis(double[][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_axis(double[][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_buffer_length(int, int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_coeff_len(int, int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_max_level(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_max_level(int, PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt_single(double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
DWT_TRANSFORM - gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType
dwt2(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt2(double[][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwt3(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwtn(double[][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwtn2(double[][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwtn23(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dwtn3(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
dx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
dx - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
dx - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: double working areas 1D array of length param containing the solution of J * dx = -residuals.
dx - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: double working areas 1D array of length param containing the solution of J * dx = -residuals.
dx - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
dx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: XRsiz: horizontal separation of a sample of ith component with respect to the reference grid
dx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: XRsiz: horizontal separation of a sample of ith component with respect to the reference grid
dx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_comp_t
dx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: FIXME DOC
dx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start and end values of Tile width and height, initialised in pi_initialise_encode
dx - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
dx - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node
dx - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
dxKernelX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Kernels for the X derivative.
dxKernelY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
dxKernelZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
dxnkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
dxnkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
dxnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
dxnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Dxx(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the second order X derivative
Dxx(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the second order X derivative
Dxy(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the second order XY derivative
Dxy(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the second order XY derivative
dy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
dy - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
dy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: YRsiz: vertical separation of a sample of ith component with respect to the reference grid
dy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: YRsiz: vertical separation of a sample of ith component with respect to the reference grid
dy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_comp_t
dy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: FIXME DOC
dy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start and end values of Tile width and height, initialised in pi_initialise_encode
dy - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
DYADIC - Static variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
DYADIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
dyadicButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
dyda - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
dyda - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
dyeDatabaseID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dyeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
dyeID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
dyKernelX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Kernels for the Y derivative.
dyKernelY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
dyKernelZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
DYNAMIC - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
DYNAMIC - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Filter made up on-the-fly.
dynamic_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
dynamic_sparsity - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
dynamic_sparsity - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
dynamic_sparsity - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
dynamic_sparsity - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTestOptions
dynamic_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
DynamicCompressedRowJacobianFinalizer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DynamicCompressedRowJacobianFinalizer
DynamicCompressedRowJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DynamicCompressedRowJacobianWriter
DynamicCompressedRowSparseMatrix(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
DynamicCompressedRowSparseMatrixTestClearRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicCompressedRowSparseMatrixTestInitialization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicCompressedRowSparseMatrixTestInsertEntryAndFinalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DynamicCostFunction
dynamicDescription - Variable in class gov.nih.mipav.view.ViewImageFileFilter: Description of dynamic filter.
dynamicExts - Variable in class gov.nih.mipav.view.ViewImageFileFilter: Extensions to look at for the dynamic filter.
DynamicNumericDiffCostFunction(T, CeresSolver.Ownership, CeresSolver.NumericDiffOptions, CeresSolver.NumericDiffMethodType) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
DynamicNumericdiffCostFunctionTestJacobianWithFirstParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicNumericdiffCostFunctionTestJacobianWithSecondParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicNumericdiffCostFunctionTestTestJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicNumericdiffCostFunctionTestTestResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicompressedRowSparseMatrixSetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicProblem(boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
DynamicProblemRemoveInvalidResidualBlockDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
DynamicProblemRemoveInvalidResidualBlockDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicProblemRemoveParameterBlockWithNoResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
DynamicProblemRemoveParameterBlockWithNoResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicProblemRemoveParameterBlockWithResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
DynamicProblemRemoveParameterBlockWithResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
DynamicProblemRemoveResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
DynamicProblemRemoveResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
dynamicScanBeginTime - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
dynamicScanBeginTime - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicScanBeginTimeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicScanBeginTimePos - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicScanNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
dynamicScanNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicScanNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicScanNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
dynamicStudyGeneral - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
Dytex() - Constructor for class gov.nih.mipav.model.algorithms.libdt.Dytex: < Cvs computed
Dytex(libdt.DytexOptions) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Dytex
dytex_kalman(libdt.Mat[], libdt.Dytex, String, Vector<libdt.Mat>, libdt.Mat[], libdt.Mat[], libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
dytex_mix_split(libdt.DytexMix, libdt.DytexSplitParams, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.libdt
dytex_perturb(libdt.Dytex, double, libdt.Split_mode, libdt.Split_vars) - Method in class gov.nih.mipav.model.algorithms.libdt
DytexKalmanFilter(libdt.Dytex, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: DT reference (use a pointer).
DytexMix() - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexMix
DytexMix(libdt.DytexOptions) - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexMix
DytexOptions() - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexOptions: < option to model observation mean.
DytexOptions(int, int, libdt.cov_type, libdt.cov_type, libdt.Ymean_type) - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexOptions
DytexRegOptions() - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions: < Regularization value for S.
DytexRegOptions(libdt.cov_reg_type, double, libdt.cov_reg_type, double, libdt.cov_reg_type, double) - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
DytexRegOptions(libdt.cov_reg_type, double, libdt.cov_reg_type, double, libdt.cov_reg_type, double, libdt.cov_reg_type, double) - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
DytexSplitParams() - Constructor for class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams
Dyy(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the second order Y derivative
Dyy(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the second order Y derivative
dz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
dz - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
dzasum_(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dzKernelX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Kernels for the Z derivative.
dzKernelY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
dzKernelZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
dznrm2(int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations: BLAS level1 routine version 3.7.0 December, 2016 This is a port of the 10/14/93 DZNRM2 function Original code written by Sven Hammarling, Nag Ltd. dznrm2 returns the euclidean norm of a vector via the function sqrt(x**H*x)
dznrm2_(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
dzror(int[], double[], double[], double[], double[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
dzsum1_slu(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

E

e - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
e - Variable in class gov.nih.mipav.model.algorithms.splev
e - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Arrays for internal storage of eigenvalues.
E - Static variable in class gov.nih.mipav.util.DoubleDouble: The value nearest to the constant e (the natural logarithm base).
E - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Triangle: DOCUMENT ME!
E - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex: DOCUMENT ME!
e_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
e_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
E_fit() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: Returns the fit measure.
e_l(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM
e_mark(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM
e_sharp(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM
e_string(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM
e_w(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM
e0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
e1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
e11 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse: < center y-coordinate
e12 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse: <
e2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
e22 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse
e3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
E3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Edge 3
e4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
E5 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Edge 5
e6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
e7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
E7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Edge 7
eadd(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the sum of two numbers in the form of a base and an exponent.
eAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: DOCUMENT ME!
east - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
East - gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
EASY_COST_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
EASY_FUNCTOR_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
EasyCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EasyCostFunction
EasyFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EasyFunctor
EBlockRowOuterProduct(CeresSolver.BlockSparseMatrix, int, CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
Ec - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
Ec - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
EC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
EC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
EC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
ecAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
Ecc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
eccentricity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
eccentricityDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
echo1Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 240.
echo1Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 244.
echo1Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 250.
echo1Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 248.
echo2Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 252.
echo2Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 256.
echo2Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 262.
echo2Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 260.
echo3Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 264.
echo3Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 268.
echo3Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 274.
echo3Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 272.
echo4Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 276.
echo4Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 280.
echo4Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 286.
echo4Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 284.
echo5Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 288.
echo5Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 292.
echo5Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 298.
echo5Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 296.
echo6Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 300.
echo6Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 304.
echo6Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 310.
echo6Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 308.
echo7Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 312.
echo7Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 316.
echo7Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 322.
echo7Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 320.
echo8Alpha - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 324.
echo8Beta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 328.
echo8Level - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 334.
echo8Window - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 332.
echoNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 212 echo number.
echoNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
echoNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
echoNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
echoNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
echoNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
echoNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
echoNumbers - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
echoStdout - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
echoStdout - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
echoTime - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
echoTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 202 pulse echo time (usec).
echoTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
echoTime - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
echoTime - Variable in class gov.nih.mipav.model.file.FilePARREC
EchoTime - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
echoTimeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
echoTimePos - Variable in class gov.nih.mipav.model.file.FilePARREC
echoTrainLength - Variable in class gov.nih.mipav.model.file.FileGESigna4X
echoTrainLength - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
echoTrainLength - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
Eckerle4CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Eckerle4CostFunction
Eckerle4Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Eckerle4Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
ecn - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: cn (u, hk)
ecode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
ecode - Variable in class gov.nih.mipav.model.file.FileNIFTI
ecodeArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
ecodeIntToString(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
ecpdiv(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Divides two numbers and returns the solution.
ecpmul(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Multiplies two numbers which are each represented in the form of a two by two array and returns the solution in the same form
ed - Variable in class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
ed - Variable in class gov.nih.mipav.model.structures.jama.METIS.cnbr_t
ed - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
edegrees - Variable in class gov.nih.mipav.model.structures.jama.METIS.nrinfo_t
edge - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
edge - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node
edge - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
edge() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
edge() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
Edge - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
Edge() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
Edge() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Edge
Edge() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Edge: Creates a new Edge object.
Edge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
Edge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
Edge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Edge
Edge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
Edge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
Edge(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.Edge: Constructs an edge in the table.
Edge(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.Edge: Constructs an edge in the table.
Edge(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Edge: Constructs an edge in the table.
Edge(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.Edge: Constructs an edge in the table.
Edge(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.Edge: Constructs an edge in the table.
Edge(LODMesh.Vertices, LODMesh.Vertices) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
Edge(LODMesh.Vertices, LODMesh.Vertices, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
edge_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
edge_face_1(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
edge_face_2(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
edge_length(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
edge_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
edge_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT
edge_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < peak threshold.
edge_thresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
edge_vertex_1(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
edge_vertex_2(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
edge_weights_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
edgeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: DOCUMENT ME!
edgeAttract - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: edgeAttract is the ratio of the maximum value of the absolute value of the edge attractive force to the maximum value of the absolute value of the sum of the propagation and curvature forces.
edgeAttract - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
EdgeAttribute() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.EdgeAttribute: Construct an attribute for an edge.
edgeBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
EdgeCollapse(float, Vector<TriangleIndex>, Vector<Point3D>, Vector<Point3D>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
EdgeCollapse(int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
edgeComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edgeComparator
EdgeCorners(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
EdgeCorners(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
edgeDetect(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
edgeDetectionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
edgeImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: DOCUMENT ME!
edgeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: If true an edge map image should be produced.
edgeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
edgeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
edgeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: DOCUMENT ME!
edgeImg - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
edgeIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RootInfo
EdgeIndex - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
EdgeIndex() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.EdgeIndex
EdgeIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
EdgeIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
EdgeIndex(int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
EdgeIndex(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
EdgeIndex(OctNode, int, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
edgeJunctions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
edgeKernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size of the edge detection kernel.
edgeKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Edge detection kernel size (.6 in Shattuck paper).
edgeKernelSizeTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Text field used to enter the edge detection kernel size.
EdgeKey(LSCM.Vertex, LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.EdgeKey
edgelist_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
edgeMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
edgeMask - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
edgeMask - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
edgenbr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
edgeNeighbor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
edgeNeighbor(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
edgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
edgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
edgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
edgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
edgePattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
edgePixelCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
EdgeReflectCornerIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
EdgeReflectEdgeIndex(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
EdgeRootCount(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
edges - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
edges - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
edges - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction
edges() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
EDGES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
EDGES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
edges_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
edges_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
edgeScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2
edgeScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3
edgeScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature: < peak score.
EdgeSorter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
edgeStrength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
edgeStrip(float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This function edge strips the realData after the inverse FFT to return to the original dimensions that were present before the forward FFT was performed.
edgeStrip(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This function edge strips the realData after the inverse FFT to return to the original dimensions that were present before the forward FFT was performed.
edgeTable - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
edgetd2Image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
edgetd3Image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
edgeThreshold - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < peak threshold.
EdgeTrait() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
EdgeWeight(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
edgingType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Edge type.
edgingType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Edge type.
edgingType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Edge type.
edgingType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Edge type.
edgingType - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
edgingTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
edgingTypePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
edit - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
edit - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: edit button.
edit - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
editAction(String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Modify the Annotation field of the selected node.
editAnnotations(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Enable editing annotations in either 3D or 2D windows with the mouse.
editBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
editButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: DOCUMENT ME!
editCircleDiameter - Variable in class gov.nih.mipav.view.ViewJPopupVOI
editCircleDiameter() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
editCircleDiameter(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from the JDialogEditCircleDiameter.
editClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
edited - Variable in class gov.nih.mipav.model.file.FileBioRad: not used in disk files.
editImageFrameA - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
editImageFrameB - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
editLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
editLatticeOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
editMenu - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
editNotes(String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Modify the Annotation field of the selected node.
editorDeleteTag - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
editorDialogDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
editorDialogDicomList - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
editorDialogTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
editorDialogTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: hashtable to store editor dialogs associated with the table.
editorNewTag - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
editSeamCellOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
editSquareLength - Variable in class gov.nih.mipav.view.ViewJPopupVOI
editSquareLength() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
editSquareLength(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from JDialogEditSquareLenth, changes the length of the selected square VOI.
editStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
editSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
editSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
editTagButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
editTextField - Variable in class gov.nih.mipav.view.JPanelEditChar: DOCUMENT ME!
editTextField - Variable in class gov.nih.mipav.view.JPanelEditDefault: DOCUMENT ME!
editTextField - Variable in class gov.nih.mipav.view.JPanelEditSetOrParam: DOCUMENT ME!
editUserDefButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Button to lasunch the Edit User Defined File Types Dialog
ediv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the solution in the form of the base and exponent of the division of two exponential numbers.
edn - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: dn (u, hk)
effEchoSpace - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 828 effective echo spacing for EPI.
effectiveSpectralBandwidth - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
efficiencyImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
efficiencyImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
effImageCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
eftData - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
eftDims - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
eftEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
eftName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
EG_FA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: EigenVector and Functional Anisotropy dialog:
ei - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplex
EIGEN - gov.nih.mipav.model.algorithms.CeresSolver.DenseLinearAlgebraLibraryType
eigen_Mat_rm(SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
eigen_sort3d_m(double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
EIGEN_SPARSE - gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType
eigen2d_m(double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
eigen3d_m(double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
EigenQuaternionParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
EigenQuaternionParameterizationAwayFromZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EigenQuaternionParameterizationNearZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EigenQuaternionParameterizationTestHelper(double[], double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EigenQuaternionParameterizationZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EigenQuaternionProduct(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver: Constructs and initializes the quaternion \f$ w+xi+yj+zk \f$ from its four coefficients \a w, \a x, \a y and \a z.
eigenSystemAlgo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
eigenSystemAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Eigensystem solver.
eigenSystemAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
EigenvalueComplex(double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplex
EigenvalueComplexComparator() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplexComparator
EigenvalueDecomposition - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Eigenvalues and eigenvectors of a real matrix.
EigenvalueDecomposition(double[][]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
EigenvalueDecomposition(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Check for symmetry, then construct the eigenvalue decomposition
eigenValueImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
EigenValueImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
eigenvalues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
EigenValues() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the eigen values in vector form.
EigenValuesOrg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the orignal eigen values in vector form.
eigenvectorBrowseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
eigenVectorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
EigenVectorImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
eigenvectorLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
eigenvectorPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
EigenVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the eigen vectors in matrix form.
eightButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
eightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
eighteenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
eighteenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
eighteenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
eighteenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
EIGSYS(int, double, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
eigvecFilename - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: names of eigenvector and anisotropy files*
eigvecFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: names of eigenvector and anisotropy files*
eigvecSrcImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: eigenvector src image *
eigvecSrcImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: eigenvector src image *
eigvecSrcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: eigenvector src image *
eigvecSrcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: eigenvector src image *
eimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
eimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
eIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangulationTriangle
eit2 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
eit3 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
elapsedStudyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
elapsedTime - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Elapsed time (in milliseconds) -- time it took for algorithm to run.
elapsedTime - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Variance of the score updates.
elapsedTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer: Elapsed time (in milliseconds) -- time it took for algorithm to run.
ELdelete(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELedge - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
elem - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
elem() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
element - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator: the element of this spliterator (reused on each pixel of the delegate)
element - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Represents the DICOM element number.
element - Variable in class gov.nih.mipav.model.dicomcomm.RTCEntry: DOCUMENT ME!
element - Variable in class gov.nih.mipav.model.file.FileDicomTag: Integer element word (in hexadecimal).
element - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: the VOIText element in the VOI to modify
element - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Matrix element array.
element_find(int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
element_link(int, int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
element_link_geod_dilate(int, int, int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
element_to_group_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
elementAt(int) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the parameter at a particular position in the list.
elementBuffer - Variable in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
elementBuffer - Variable in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.view.dialogs.MyXMLHandler: The data for the current element being parsed.
elementBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Current buffer:.
elementBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Current buffer:.
elementBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Current buffer:.
elementBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Current buffer:.
elementBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: The data for the current element being parsed.
elementCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Combo boxes used for sequence tags
elementCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
elementCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
ElementDivide(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element-wise matrix division.
ElementDivide(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Divide two vectors element-wise.
elementField - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
elementFocus - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
elementLength - Variable in class gov.nih.mipav.model.file.FileDicom: Length of the value field of data element.
elementList - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Lists used to display available DICOM tags
ElementMultiply(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element-wise matrix multiply.
ElementMultiply(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Multiplies two vectors element-wise.
elementNum - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
elementNum - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D
elementNum - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: DOCUMENT ME!
elementSeqText - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Text fields for displaying/entering a group/element tag
elementString - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
elementText - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Text fields for displaying/entering a group/element tag
elementTimes(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
elementWord - Variable in class gov.nih.mipav.model.file.FileDicom: Second number (DICOM element in a group) in ordered pair of numbers that uniquely identifies a data element.
elems - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
elemSize - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
ELgethash(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELhash - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELhashsize - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELI - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
elim - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
elim - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
Eliminate(CeresSolver.BlockSparseMatrix, double[], double[], CeresSolver.BlockRandomAccessMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
Eliminate(CeresSolver.BlockSparseMatrix, double[], double[], CeresSolver.BlockRandomAccessMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase
EliminateSolveAndCompare(double[], boolean, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
elimination_groups - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
elimination_groups - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
eliminator_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
eliminator_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
ELinitialize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELinsert(delaunay.Halfedge, delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
elist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
elist - Variable in class gov.nih.mipav.model.algorithms.Integration2: Estimates of the absolute errors on the subintervals.
elist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Estimates of the absolute errors on the subintervals.
elit(double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Ported from Computation of Special Functions by Shanjie Zhang and Jianming Jin Computes complete and incomplete first and second elliptic integrals with a real modulus and real argument 0 <= mod <= 1, mod is the modulus arg is the argument in radians.
elit3(double, double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Ported from Computation of Special Functions by Shanjie Zhang and Jianming Jin Computes complete and incomplete elliptic integrals of the third kind with a real modulus real argument, and real parameter 0 <= mod <= 1, mod is the modulus arg is the argument in radians c is the parameter, 0 <= c <= 1.
ell - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
Ell - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
ell12(double, double, double, double, double, double, int) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Calculates complete and incomplete elliptic integrals of the first and second kind with complex arguments Ported from the Tohru Morita article.
ELleft - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
ELleft(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELleftbnd(delaunay.Point) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELleftend - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ellie(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
ELLIE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ellik(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
ELLIK - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ellipap1() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
ellipjc(double[][], double[][], double[][], double[][], double, boolean) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
ellipkkp(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
ELLIPSE - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
ELLIPSE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ELLIPSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
ELLIPSE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in ellipse VOI mode
ellipseBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ellipseComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
ellipseCross - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
ellipseCross - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ellipseCurves - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ellipseCurvesVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ellipseDiameter - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
ellipseEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
ellipseModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
ellipseRangeTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
ellipseRangeTolerance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Maximum percent by which perimiter pixels can deviate from the ellipse equation
ELLIPSES_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
ELLIPSES_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogMSER
ellipseScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ellipsesOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
Ellipsoids - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
ELLIPTIC - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
ELLIPTIC - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
ELLIPTIC - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
ELLIPTIC - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
ELLIPTIC - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
ELLIPTIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
ELLIPTIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
ELLIPTIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
ELLIPTIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
ELLIPTIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
ellipticAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
ellipticButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
ellipticFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
ellipticFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
ellipticFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
ellipticFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
ellipticFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
EllipticIntegral - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
EllipticIntegral() - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: ~ Constructors ---------------------------------------------------------------------------------------------------
EllipticIntegral(boolean, double, double, boolean, boolean, double, double, double[], double[], double[], double[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: When calculating the complete integrals K(k) and E(K), we can make complete true or false, except when abs(k') <= 1.0E-10, in which case complete must be true and the complementary modulus must be used The only merit of the alternative method over the standard method is that the code is simpler Both methods are based on modifications of Carlson's algortihm.
EllipticIntegral(double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: Used for complete elliptic integrals of first and second kind with real modulus 0 <= mod <= 1, mod is the modulus.
EllipticIntegral(double, double, boolean, boolean, double[], double[], double[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: Constructor only for complete integrals with phi = PI/2.
EllipticIntegral(double, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: Used for complete and incomplete elliptic integrals of first and second kind with real modulus and argument 0 <= mod <= 1, mod is the modulus phi, argument in radians.
EllipticIntegral(double, double, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.EllipticIntegral: Used for complete and incomplete elliptic integrals of the third kind with real modulus, real argument phi, and real parameter c 0 <= mod <= 1 phi, argument in radians c parameter, 0 <= c <=1.
ellpe(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
ELLPE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ellpk(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
ELLPK - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ELpm - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
ELrefcnt - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
ELright - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
ELright(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELrightend - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ELSUNC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
ELSUNC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
ELSUNC - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
ELSUNC - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
ELSUNC - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
ELSUNC - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
elsuncEngine - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
elts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
elts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
email - Variable in class gov.nih.mipav.model.file.FileInfoCZI
email - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Investigator's email.
email - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter
email - Variable in class gov.nih.mipav.model.file.FileInfoOME.Person
emailField - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text field for user inputed email
emAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
emax - Variable in class gov.nih.mipav.model.algorithms.Bessel: I1MACH(16) = 1024 The largest exponent for double precision.
emax - Variable in class gov.nih.mipav.model.algorithms.BesselEP: I1MACH(16) = 1024 The largest exponent for DoubleDouble precision.
emax - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
embeddedDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE: Use serialVersionUID for interoperability.
embeddedPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: When this object exists as an embedded panel, this variable contains all necessary data elements.
Emean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.PData
emFilter - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter
emfunction() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
emin - Variable in class gov.nih.mipav.model.algorithms.Bessel: I1MACH(15) = -1021; The smallest exponent for double precision.
emin - Variable in class gov.nih.mipav.model.algorithms.BesselEP: I1MACH(15) = -1021; The smallest exponent for DoubleDouble precision.
emin - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
emissionFilterChangerArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
emissionWavelength - Variable in class gov.nih.mipav.model.file.FileInfoCZI
emissionWavelength0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelength1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelength2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelength3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelengthChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelengthChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelengthChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissionWavelengthChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
emissive - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: Defaults colors set according to defaults for Java3D Material.
EMISSIVE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: DOCUMENT ME!
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: DOCUMENT ME!
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: DOCUMENT ME!
emissiveColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
emit_message(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg
EMM - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
EMN - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
eModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
eModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
EMOptions(int, libdt.DytexRegOptions, double, libdt.Verbose_mode) - Constructor for class gov.nih.mipav.model.algorithms.libdt.EMOptions
EMPTY - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
EMPTY_CELL - Static variable in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
EMPTY_DIRECTIVE - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
EmptyButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.EmptyButton: Creates new button with correct icon and given tool tip.
EmptyButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.EmptyButton: Creates new button with correct icon and given tool tip.
emptyDisplayed - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: Whether or not emptyLabel is currently displayed
emptyIcon - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer: DOCUMENT ME!
emptyLabel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: Label to display when there are no runnables to display or listen for.
emptySplitOpt - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions
emptySplitOpt - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions
emptyVector - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
emult(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Takes one base and exponent and multplies it by another number's base and exponent to give the product in the form of base and exponent
emWave - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
EMX - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
enable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Set whether light is enabled.
ENABLE - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
enable_1pass_quant - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
enable_2pass_quant - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
enable_external_quant - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
enable_fast_removal - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
enable3DComponents(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas: Enables or disables the components in this panel which are 3D-related.
enableAllMenuItems() - Method in class gov.nih.mipav.view.ViewMenuBar: Enable all items in a menubar.
enableArbitraryClipPlane(boolean, boolean, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables the arbitrary clip plane position.
enableBoth(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
enableBurnLabels(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Attach or detach burn labels.
enableBurnLabels(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Attach or detach burn labels.
enableBurnTreatmentComponents(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Enable or disable the components on the target treatment panel.
enableBurnVisComponents(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Enable or disable the components on the burn visualization panel.
enableCalcButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
enableChannelSelection(boolean) - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Enables or disables the color channel check boxes.
enableCheckbox - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
enableClearLast(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: When a new line segment is added to the geodesic curve, the Geodesic object enables removing the last point added.
enableClearLast(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: When a new line segment is added to the geodesic curve, the Geodesic object enables removing the last point added.
enableClearLastCut(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: When a new line segment is added to the geodesic curve, the Geodesic object enables removing the last point added.
enableClearLastCut(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: When a new line segment is added to the geodesic curve, the Geodesic object enables removing the last point added.
enableClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
enableClip(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
EnableClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: Enable clipping.
enableClipArbiBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable arbitrary clipping plane behavior.
enableClipPlane(int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables the axis-aligned clipping planes.
enableCloseImageB - Variable in class gov.nih.mipav.view.ViewJFrameBase: Tells whether the ViewMenuBuilder should allow Close Image(B) after loading image B.
enableComputeButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
enableComputeEpiDistortion() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Checks that all the parameters necessary to run the epi-distortion correction are set and enables the compute button and display check-box.
enableComputeVabra() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Checks that all the parameters necessary to run the VABRA registration are set and enables the compute button and display check-boxes.
enableCut(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: The Geodesic object enables cutting the mesh when the line segments are finished, either finished open or finished closed.
enableCut(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: The Geodesic object enables cutting the mesh when the line segments are finished, either finished open or finished closed.
enableDebugOutput() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
enableDiffuse(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Enable/disable the optional diffuse color vertex property.
enableDims(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
enabledList - Variable in class gov.nih.mipav.view.JPanelChecklist: the list of the choices that can be selected.
enableDualPanelRender() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable dual panel renders.
enableEntryPoint(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Set entry point rotation flag.
enableEntryPoint(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Set entry point rotation flag.
enableEntryPointRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Enable the probe to rotate around the entry point.
enableEntryPointRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Enable the probe to rotate around the entry point.
enableEntryPointRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Enable the probe to rotate around the entry point.
enableEntryPointRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Enable the probe to rotate around the entry point.
enableEntryPointRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Enable the probe to rotate around the entry point.
enableEyeClipPlane(boolean, boolean, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables the eye clip plane.
enableEyeInvClipPlane(boolean, boolean, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables the inverse-eye clip plane.
enableFlyThruRender() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable the fly through frame layout.
enableGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Enable geodesic calculations and display.
enableGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enable geodesic curve calculations/display.
enableImageB(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: Quick and simple way for ViewJFrameBase to tell the ViewJFrameImage it created to set the menu (right now only for 2Dimensional) for image B.
enableLabelGaussX(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas
enableLabelGaussY(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas
enableLight(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
enableLight(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Enable the selected light.
enableListeners(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
enableLoad() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
enableLoggingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
enableObjBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Enable objBehavior branch group.
enableObjBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Enable objBehavior branch group.
enableOutputWindow(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface: Toggles the display of the Output window and updates all JFrameImages so that the menu checkbox will reflect the status of the output window.
enablePackBitWrite - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
enablePaint(ColorRGBA, int, boolean, boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Enable painting on TriMesh surfaces.
enablePaint(ColorRGBA, int, boolean, boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enable painting on TriMesh surfaces.
enablePDFAsImageRendering(boolean) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
enablePDFAsImageRendering(boolean) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: En/disables PDF rendering as image.
enableProbeBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Enable probe mouse behavior branch group.
enableProbeBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Enable probe mouse behavior.
enableResampleMatrixFileButton() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
enableResampleMatrixFileButtonTargetOnly() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
EnableResidualBlockDependencies() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
enableResols(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
enableResolutionCorrection(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas: Enables or disables z-dimension sigma resolution correction.
enables - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable flags for the 6 ( X, Y, Z and inverse ) clipping planes.
enablesArbi - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable flags for the arbitrary clipping planes.
enableSATransform - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
enableSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: enableSculpt: called by the ViewJFrameVolumeView object when the Draw Sculpt button is pressed.
enableSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: enableSculpt: called by the ViewJFrameVolumeView object when the Draw Sculpt button is pressed.
enableSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: enableSculpt: called by the ViewJFrameVolumeView object when the Draw Sculpt button is pressed.
enableSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Turn sculpt drawing on/off.
enableSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables and disables sculpting.
enableseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
enableShearWarpRender() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable the shear warp render.
enableSlicePickable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI: Enable the tri-planar slice pickable.
enableSlices() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Enable slider X, Y, Z and triplanar.
enableSpecular(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Enable/disable the optional specular color vertex property.
enablesStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable flags for the static clipping planes.
enableStaticClipping() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable the eye clipping plane.
enableStaticInvClipping() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Enable the eye inverse clipping plane.
enableStaticLightBehavior(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Enable static light behavior.
enableStepSize - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
enableSurfacePaint(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Enables/Disables the SurfacePaint per-vertex functions.
enableSurfacePaint(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Enables/disables the Surface per-vertex paint user-interface
enableSurfacePaint(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Enables/Disables the SurfacePaint per-vertex functions.
enableSurfacePaint(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Enables/disables the Surface per-vertex paint user-interface
enableSurfacePaintCan(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Enables/Disables the SurfacePaint Paint Can function.
enableSurfacePaintCan(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Enables/disables the Paint Can user-interface
enableSurfacePaintCan(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Enables/Disables the SurfacePaint Paint Can function.
enableSurfacePaintCan(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Enables/disables the Paint Can user-interface
enableSurfaceRender() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable surface render.
enableSvgAsImageRendering(boolean) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
enableSvgAsImageRendering(boolean) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: En/disables SVG rendering as image.
enableTargetPointPicking() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable target point for the RFA probe from within the plane renderer.
enableTargetPointPicking(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Enable or disable target point for the RFA probe from within the plane renderer:
enableTextGaussX(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas
enableTextGaussY(boolean) - Method in class gov.nih.mipav.view.components.JPanelSigmas
enableThresholdingItems(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Enables the thresholding menu item(s).
enableTranslationsYZ(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
enableTranslationX(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
enableVariableCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
enableVolRender - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Boolean flag to enable volume render button.
enableVolumeRender() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Enable volume render.
enableYSettings(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
encapJP2Checkbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Check box for specifying whether DICOM files should be saved as an encapsulated JPEG2000
encapsulated - Variable in class gov.nih.mipav.model.file.FileDicom: When Dicom image data is 'encapsulated,' it may be in pieces, or 'fragments.' don't know quite why, or if pieces should be kept together.
encapsulatedImageData() - Method in class gov.nih.mipav.model.file.FileDicom: Starts with image tag. goes with OB/OW. image file must be open, file ptr: raFile.
encapsulatedJP2 - Variable in class gov.nih.mipav.model.file.FileDicom
encapsulatedJP2ImageData(int) - Method in class gov.nih.mipav.model.file.FileDicom
encoder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
EncoderRAW - Class in gov.nih.mipav.model.file.rawjp2: This class is the main class of JJ2000's encoder.
EncoderRAW(ParameterList) - Constructor for class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Instantiates an encoder object, width the ParameterList object given as argument.
EncoderRAW(ParameterList, ModelImage) - Constructor for class gov.nih.mipav.model.file.rawjp2.EncoderRAW
EncoderRAWColor - Class in gov.nih.mipav.model.file.rawjp2: This class is the main class of JJ2000's encoder.
EncoderRAWColor(ParameterList) - Constructor for class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Instantiates an encoder object, width the ParameterList object given as argument.
EncoderRAWColor(ParameterList, ModelImage) - Constructor for class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor
encodingString - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: Data compression - raw, gzip
EncodingTypes - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
end - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task
end - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
end - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
end - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
end - Variable in class gov.nih.mipav.model.algorithms.libdt.Range
end - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: pointer to the end of the buffer
end - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
end - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: pointer to the end of the buffer
end - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.Parser
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
end() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
end() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
end(Point) - Method in class gov.nih.mipav.view.Rubberband: Sets the end point to this point.
end_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
end_header - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tp_index_t: end position of the header
end_ph_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_packet_info_t: end of packet header position (including EPH marker if it exists)
end_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_packet_info_t: packet end position
end_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tp_index_t: end position
END_SLICE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for last slice to save from an image parameter.
END_TIME - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for the parameter indicating the last time slice to save.
endAngle - Variable in class gov.nih.mipav.view.RubberbandEllipse: DOCUMENT ME!
endBlock() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
endBlock() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
endButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
endBytes - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
endCalendar - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
endCoarse() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Call endCoarse when you are finished with the region growing.
endCompression() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
endDayBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
endDistanceTransform() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Call endDistanceTransform when you are finished with the distance transform construction.
endDocument() - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Do nothing.
endDocument() - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: Handle the end of the XML document.
endDocument() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
endDocument() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Do nothing.
endDocument() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Do nothing.
endDocument() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Do nothing.
endDocument() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Do nothing.
ended - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
ended - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
ended - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
endElement(String, String, String) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Called by parser when the end of an element is reached in the document.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler: Parser calls this when the end tag of each element is reached.
endElement(String, String, String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
endElement(String, String, String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Called by parser when the end of an element is reached in the document.
endElement(String, String, String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called by parser when the end of an element is reached in the document.
endElement(String, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Called by parser when the end of an element is reached in the document.
endElement(String, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Called by parser when the end of an element is reached in the document.
endElement(String, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: Parser calls this when the end tag of each element is reached.
endElementEdge() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: End Edge element.
endElementGraph() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: Ends the Graph.
endElementLabel() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: Called when the end of the Label element is found.
endElementNode() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: Called when the end of the Node Element is found.
endEvolution() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Call endEvolution when you are finished with the level-set evolution.
endFloats - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
endian - Variable in class gov.nih.mipav.model.algorithms.libdt
endianess - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
endianess - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileAvi: true for big-endian and false for little-endian.
endianess - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileCZI
endianess - Variable in class gov.nih.mipav.model.file.FileDicom: Stores the endianess of the header, used for processing sequence tags
endianess - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileGESigna4X
endianess - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileInfoBase: The Endianess of the data.
endianess - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileJP2: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileJPEG2000
endianess - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileMinc: The endianess of the image being written or read.
endianess - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.model.file.FileZVI
endianess - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Indicates the endianess of the image.
endianess - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
endianess - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
ENDIANESS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: The label to use for the parameter indicating the endianess
EndianValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
endIndex - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
endIndex - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Pointer to the end of data in the buffer.
endIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
endIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
endIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
endIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
endingIFD() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
endingIFD() - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler
endLoc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 128 - Last scan location (L/S).
endMatchFOVradio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Radio button for slice start & end matching interpolation.
endMonthBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
endOfImage() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
endOfImage() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
endOfMonth(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Calculates the last date of the month.
endOfStream() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
endOfStream() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
endOfStream() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
ENDOSCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality endoscopy.
ENDOSCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality endoscopy.
ENDOSCOPY - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
endoscopyImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Loaded endoscopy image file.
endoscopyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Loaded endoscopy image file.
endpoint(delaunay.Edge, int, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
endPointTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Probe detection ending point transform group that represents the probe guide line ending point.
endPt - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
endPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endPt - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
endPtr - Variable in class gov.nih.mipav.model.structures.TransferFunction: Points to the next available storage location for the point.
endPtTransVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: End point coordinate vector in the world coordinate system.
endRange - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
endRange1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: The ending range value of the input image.
endRange2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: The ending range value of the output image.
endRAS - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 126 - 1 byte - RAS letter for last scan location (L/S).
endShorts - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
endSlice - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
endSlice - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
endSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
endSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Value of the end slice for the calculation (X,Y,Z).
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.Range
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.Range
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
endSliceImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Ending slice check references for apex and base.
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
endSliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
endSliceRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
endSliceRangeNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
endTag - Static variable in class gov.nih.mipav.model.file.FileHistoLUT: Tag marking the end of a LUT or transfer file.
endTime - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: DOCUMENT ME!
endTimePeriod - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: The measure used to terminate the iterations is the coefficient of variation of change in field estimates between successive iterations.
endTol - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
endTol - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
endTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
endVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
endVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
endVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
endVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
endVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
endVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
endX - Variable in class gov.nih.mipav.model.file.FileGESigna4X
endX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
endX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line
endX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line
endX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line
endX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line
endX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line
endXexcl - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
endXinclusive - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
endXinclusive - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
endY - Variable in class gov.nih.mipav.model.file.FileGESigna4X
endY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
endY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line
endY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line
endY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line
endY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line
endY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line
endYearBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
endYinclusive - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
endYinclusive - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
endZ - Variable in class gov.nih.mipav.model.file.FileGESigna4X
endZ - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ene - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
energy - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate energy Energy = square root(asm).
energy - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate energy Energy = square root(asm).
energy - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
energy - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
energyCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
energyCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
energyImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: DOCUMENT ME!
energyNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
energyWindowName - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
energyWindowsNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
enforceDistinctVolumeWriting - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
enhancedCT - Variable in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Radio button to indicate that an enhanced CT file should be written out.
enhancedDicomButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: All frames in one file
enhancedMR - Variable in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Radio button to indicate that an enhanced MR file should be written out.
enhancedNumSlices - Variable in class gov.nih.mipav.model.file.FileDicom
enhancedNumVolumes - Variable in class gov.nih.mipav.model.file.FileDicom
enhancedOther - Variable in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice
enhancedTagTables - Variable in class gov.nih.mipav.model.file.FileDicom
enhancedThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Enhanced image threshold
enhancedThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Enhanced image threshold
enhancedXA - Variable in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Radio button to indicate that an enhanced XA file should be written out.
ENHANCEMENT - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
enop2D(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
ENORM(int, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
enphi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
ENRIGHT_AND_PRYCE_A1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_A1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_A2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_A2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_A3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_A3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_A4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_A4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_A5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_A5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_B1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_B1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_B2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_B2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_B3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_B3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_B4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_B4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_B5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_B5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_C1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_C1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_C2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_C2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_C3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_C3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_C4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_C4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_C5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_C5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_D1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_D1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_D2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_D2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_D3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_D3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_D4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_D4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_D5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_D5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_E1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_E1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_E2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_E2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_E3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_E3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_E4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_E4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_E5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_E5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_F1 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_F1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_F2 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_F2 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_F3 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_F3 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_F4 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_F4 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENRIGHT_AND_PRYCE_F5 - Variable in class gov.nih.mipav.model.algorithms.ODE
ENRIGHT_AND_PRYCE_F5 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ENSOCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ENSOCostFunction
ENSOData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
ENSOObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
ensurePopupMenuCreated() - Method in class gov.nih.mipav.view.JScrollMenu: Lazily creates the popup menu.
entireFlag - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Flag indicating if histogram should be done on all of image or not.
entireFlag - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Flag indicating if histogram should be done on all of image or not.
entireFlag - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
entireFlag - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
entireFlag - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: true means apply to entire image, false only region.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: if true, indicates that the VOIs should NOT be used and that entire image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: if true, indicates that the VOIs should NOT be used and that entire image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: If true the histogram should be calculated for the entire image.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Ideally the Weiner filter noise equals the white noise of the image.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: if true, indicates that the VOIs should NOT be used and that entire image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: if true, indicates that the VOIs should NOT be used and that entire image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Whether to convolve the whole image or just pixels inside a mask.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: If true, ignore VOIs and process entire image
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Whether to process the entire image, or just the portion within the currently selected VOI.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: true means apply to entire image, false only region.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: true means apply to entire image, false only region.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: true means apply to entire image, false only region.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: true means apply to entire image, false only region.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
entireImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Flag, if true, indicates that the whole image should be processed.
entireImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
entireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
entireImage - Variable in class gov.nih.mipav.view.ViewJFrameGraph
entireImage(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Sets a flag to indicate if the histogram is to be calculated for the entire image or just the VOI.
Entries() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
entropicAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: DOCUMENT ME!
entropy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
entropy - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calcuate entropy Sum over i,j of -Probability(i,j) * ln(Probability(i,j)).
entropy - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calcuate entropy Sum over i,j of -Probability(i,j) * ln(Probability(i,j)).
entropy - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
entropy - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
entropy_arith - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
entropy_huff - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
entropyCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
entropyCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
entropyFunction(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
entropySplit(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Calculate maximum entropy split of a histogram.
entry - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 80 - Patient Entry.
entry - Variable in class gov.nih.mipav.model.provenance.ProvenanceChangeEvent
Entry - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Entry(Vertex, float, Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
ENTRY_POINT - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates the probe entry point color.
ENTRY_POINT - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates the probe entry point color.
entryPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: entry point coordinate of the specified probe.
entryPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The vector record the translation coordinate of the entry point.
entryPointBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the enty point.
entryPointLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: entry point label.
entryPointPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Panel that hold the entry point roation check box.
entryPointRotationCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: entry point rotation check box.
entrySet() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Returns the set of parameter entries.
ENumGrad - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
EOBRUN - Variable in class gov.nih.mipav.model.file.libjpeg.savable_state
eof - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
eof - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
EOF - Variable in class gov.nih.mipav.model.algorithms.SIFT: < Generic I/O error.
EOFB - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable
EOFB - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable
EOI - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
EOI - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
eoi_reached - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
EOL - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
EOL - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
EOLCW - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
EOLCW - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
eoptBFGS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eoptConjugateGradient - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
EOptMethod - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eoptPatternSearch - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eoptSimulatedAnnealing - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eoptSteepestDescent - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eoptUnknown - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
ep - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
EP - Static variable in class gov.nih.mipav.model.algorithms.Cephes
epb_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables writing of EPB, in case of activated JPWL
epc_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables writing of EPC in MH, thus activating JPWL
EPI_DISTORTION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
EPIpanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
EPIpanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
epmach - Variable in class gov.nih.mipav.model.algorithms.Integration2: epmach = D1MACH(4) Machine epmach is the smallest positive epmach such that (1.0 + epmach) !
epmach - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: epmach = D1MACH(4) Machine epmach is the smallest positive epmach such that (1.0 + epmach) !
epoch - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
epoch - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Solver iteration.
EPOCH_1_JAN_1904 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.DateUtil: The offset (in milliseconds) to add to a MP4 date/time integer value to align with Java's Epoch.
eps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: DOCUMENT ME!
eps - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
eps - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
eps - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
eps - Variable in class gov.nih.mipav.model.algorithms.NESolve
eps - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
eps - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
eps - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
eps - Variable in class gov.nih.mipav.model.algorithms.Poly
eps - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
eps - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
eps - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
eps - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
eps - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
eps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter: stopping criteria
eps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
eps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron
eps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
eps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
Eps - gov.nih.mipav.model.file.MetadataExtractor.FileType
EPS - Static variable in class gov.nih.mipav.model.algorithms.Cephes
EPS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
EPS - Static variable in class gov.nih.mipav.util.DoubleDouble: The smallest representable relative difference between two {link @ DoubleDouble} values
eps_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
eps_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
eps0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
EPS2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
epsabs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: DOCUMENT ME!
epsabs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
epsabs - Variable in class gov.nih.mipav.model.algorithms.Integration2: If epsabs <= 0.0 and epsrel < Math.max(50*relative machine accuracy, 5.0E-29), the routine will exit with an error message.
epsabs - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: If epsabs <= 0.0 and epsrel < Math.max(50*relative machine accuracy, 5.0E-29), the routine will exit with an error message.
epsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
epsfcn - Variable in class gov.nih.mipav.model.algorithms.Lmmin: step used to calculate the jacobian epsfcn is an input variable used in choosing a step length for the forward-difference approximation.
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: epsilon is used to smooth high curvature regions. epsilon is between 0 and 1 with larger epsilon doing more smoothing
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
epsilon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
epsilon - Variable in class gov.nih.mipav.model.algorithms.Bessel: D1MACH(4).
epsilon - Variable in class gov.nih.mipav.model.algorithms.BesselEP: The smallest representable relative difference between two {link @ DoubleDouble} values
epsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
epsilon - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
epsilon - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
epsilon - Variable in class gov.nih.mipav.model.algorithms.Fastfit: Original C and MATLAB code from fastfit and lightspeed packages by Tom Minka.
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets: D1MACH(4).
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
epsilon - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
epsilon - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: D1MACH(4).
epsilon - Variable in class gov.nih.mipav.model.algorithms.LsqFit
epsilon - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
epsilon - Variable in class gov.nih.mipav.model.algorithms.NL2sol
epsilon - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
epsilon - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
epsilon - Variable in class gov.nih.mipav.model.algorithms.Quaternions
epsilon - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Maximum number of iterations.
epsilon - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
epsilon - Variable in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
epsilon - Variable in class gov.nih.mipav.model.structures.jama.SVD
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
epsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
epsilon() - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
EPSILON - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
EPSILON - Static variable in class gov.nih.mipav.model.algorithms.NLFittedFunction: Minimum allowable distance between iterations of a coefficient before considered converged.
EPSILON - Variable in class gov.nih.mipav.model.algorithms.NMSimplex
EPSILON - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
EPSILON - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
EPSILON - Variable in class gov.nih.mipav.model.structures.Triangulation
EPSILON - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMathf: DOCUMENT ME!
EPSILON - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
EPSILON() - Method in class gov.nih.mipav.model.algorithms.CDFLIB
EPSILON_SVR - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
EPSILON_SVR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
epsilonLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
epsilonText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
epsl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
epsl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
epsrel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: DOCUMENT ME!
epsrel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
epsrel - Variable in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
epsrel - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
Eq(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise equal to.
Eq(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Equal - compares a vector and a double.
Eq(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise equal to.
Eq(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Equal - compares a vector and a vector.
EQ - Static variable in class gov.nih.mipav.model.algorithms.Cephes
EQ(double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
EqDiff(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
EqDiff(CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
eqManuf - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
eqnA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnPlanes - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vetor holding the clipping plane equations.
eqnPlanesArbi - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vetor holding the clipping plane equations.
eqnPlanesStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vetor holding the clipping plane equations.
eqnX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
eqnZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Vector4D clipping equation of each clipping plane.
EqProd(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
EqProd(CVisDMatrix, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
EqSum(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
EqSum(CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
eqType - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
EQUAL_WEIGHTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
EQUAL_WEIGHTS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
equalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
equalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
equalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
equalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
equalDistanceSmooth(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
equalDistanceSmooth(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
equalDistanceSmooth(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
equalRange - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
equalRange - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
equalRangeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
equals(double[][][][][], double[][][][][], double, boolean[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
equals(double[][][][], double[][][][], double, boolean[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
equals(double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model: don't use Arrays.equals(double[], double[]) here, cause 0.0 and -0.0 should be handled the same
equals(MetadataExtractor.Rational) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Indicates whether this instance and other are numerically equal, even if their representations differ.
equals(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is equal to another DoubleDouble value.
equals(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
equals(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
equals(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
equals(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
equals(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
equals(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
equals(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
equals(Entry) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
equals(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
equals(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
equals(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
equals(UpdateFlags.EdgeSorter) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
equals(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
equals(CoredPointIndex) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
equals(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
equals(JDialogProstateImageCategorize.perImageCost) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
equals(JDialogProstateImageCategorize.perShapeCost) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
equals(ClassificationWidgetState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState
equals(Object) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.Edge: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel
equals(Object) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.Edge: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair
equals(Object) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Pair
equals(Object) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet
equals(Object) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey
equals(Object) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pair
equals(Object) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair
equals(Object) - Method in class gov.nih.mipav.model.file.FileDicomKey: Objects are equal if both are of type FileDicomKey, and both refer to the same value; if the input type is a String and the String representation of the key matches.
equals(Object) - Method in class gov.nih.mipav.model.file.FileDicomTag: Tests whether a tag contains the same information as this tag.
equals(Object) - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Tests whether a tag info object contains the same information as this tag info object.
equals(Object) - Method in class gov.nih.mipav.model.file.FileIO.OrientStatus: Determines if the given orientation is the same as the current one.
equals(Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
equals(Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
equals(Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
equals(Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
equals(Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Compares two MetadataExtractor.Rational instances, returning true if they are mathematically equivalent.
equals(Object) - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey: Objects are equal if both are of type FileDicomKey, and both refer to the same value; if the input type is a String and the String representation of the key matches.
equals(Object) - Method in class gov.nih.mipav.model.structures.VOIBase
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Edge: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle: Support for hashing into a map of triangles.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Vertex: Support for hashing into a map of vertices.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.Edge: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjEdgeKey: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix.Index: override for Object method used for hashing.
equals(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.Edge: Support for hashing into a map of edges.
equals(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair
equals(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode
equals(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
equals(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node
equals(String) - Method in class gov.nih.mipav.model.structures.VOI: two VOIs are the same if they have the same name.
equals(FileFilter) - Method in class gov.nih.mipav.view.ViewImageFileFilter: Determines if this file filter is equal (in value) to another.
equalScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
equalScaleImage() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
equalScaleImage() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
equalScaleImageLight() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
equalsExact(MetadataExtractor.Rational) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Indicates whether this instance and other have identical Numerator and Denominator.
equalsParameterBlock(CeresSolver.ParameterBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
equalSplit(Vector<Integer>, int, int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
equalTimeSpacing - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
equalValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
equalValue - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
equalVectorDouble(Vector<Double>, Vector<Double>, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
equalVectorInteger(Vector<Integer>, Vector<Integer>, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
equalVectorVectorDouble(Vector<Vector<Double>>, Vector<Vector<Double>>, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
equalVectorVectorInteger(Vector<Vector<Integer>>, Vector<Vector<Integer>>, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
Equation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
Equil - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
EQUIL - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
EQUILIBRIUM_COMBUSTION - Variable in class gov.nih.mipav.model.algorithms.Lmmin
EQUILIBRIUM_COMBUSTION - Variable in class gov.nih.mipav.model.algorithms.LsqFit
EQUILIBRIUM_COMBUSTION - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
equipmentName - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: Scan attributes.
equipmentUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 400 - 32 bytes.
er - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
er - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplex
erAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
ERARC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
erase(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
Erase(Renderer, PickRecord, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Erase paint.
Erase(Renderer, PickRecord, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
eraseAllPaint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Erase all surface paint.
eraseAllPaint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Erase all surface paint.
eraseAllPaint(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Erases all paint.
EraseAllPaint(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Erase all paint.
ERASER_PAINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: This mode is an active VOI mode used by the VOI Handler
eraseRect - Static variable in class gov.nih.mipav.model.file.FileLIFF
ereal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
ereal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
erf() - Method in class gov.nih.mipav.util.DoubleDouble
erf(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
erf(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
erf(double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
erf(double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
ERF - Static variable in class gov.nih.mipav.model.algorithms.Cephes
erfc(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
ERFC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
erfc1(int, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
erfcModel() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel: Creates a new IntModel object.
erfcModel2(double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel2
erfinv(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv
Erfinv - Class in gov.nih.mipav.model.algorithms
Erfinv() - Constructor for class gov.nih.mipav.model.algorithms.Erfinv
erfinv_refine(double, int) - Method in class gov.nih.mipav.model.algorithms.Erfinv
Erfinv.ppnd16_impl - Class in gov.nih.mipav.model.algorithms
Erfinv.ppnd7_impl - Class in gov.nih.mipav.model.algorithms
ergas() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ERGAS - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
ergas_mean - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
ERI - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
erlst - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqawfe vector of dimension at least limlst erlst[k] contains the error estimate corresponding wiht rstlst[k].
erlst - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqawfe vector of dimension at least limlst erlst[k] contains the error estimate corresponding wiht rstlst[k].
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Erodes an image using the indicated kernel and the indicated number of executions.
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Erodes an image using the indicated kernel and the indicated number of executions.
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Erodes an image using the indicated kernel and the indicated number of iterations.
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Erodes a boolean or unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Erodes a boolean or unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
erode(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Erodes a boolean, unsigned byte, or unsigned short image using the indicated kernel and the indicated number of iterations.
erode(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Erode an image and mark the pixels we erode for attenuation later.
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
erode2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Erodes an image slice using the indicated kernel and the indicated number of executions.
erode2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Erodes a boolean or unsigned byte or unsigned short image slice using the indicated kernel and the indicated number of executions.
erodeAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
erodeAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
erodeAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
erodeAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
erodeAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
erodeDimType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
erodeImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: erosion.
erodeObject(BitSet, int, int, int, BitSet, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: erode binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
erodePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Erode panel.
erosion25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Whether to erode / dilate image slices independently.
erosion25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Whether to process the slices of the 3D image separately while performing the erosion / dilation.
erosion25DCB - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Check box for indicating whether erosion / dilation should process slices independently.
erosionIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The number of erosions/dilations to perform.
erosionIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Number of erosion / dilation operations to perform (2 in Shattuck paper).
erosionIterationsTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Text field used to enter the number of erosions / dilations.
erosionLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Label for the percentage entered for second stage edge erosion.
erosionTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Defines the allowable percentage for edge intensity values ub second stage edge erosion, default is 50 percent.
err - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_common_struct
err - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
err_con - Variable in class gov.nih.mipav.model.algorithms.CVODES
err_est(int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.curfit
err_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Ransac
errclb(int, int, double, double[], double[], int[], String[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
error - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
error - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
error - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
error - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
error - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
error - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
error - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: error dependent upon the chosen similarity measure.
error - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
error - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
error(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
error(String) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler
error(String, int) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(String, int) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(String, int) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(String, int) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(String, int, Throwable) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(String, int, Throwable) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Prints the error message 'msg' to standard err, prepending "ERROR" to it, and sets the exitCode to 'code'.
error(SAXParseException) - Method in class gov.nih.mipav.model.file.XMLErrorHandler: Handles parse exception errors by passing the parse exception up as a SAXException.
error(SAXParseException) - Method in class gov.nih.mipav.view.dialogs.XMLErrorHandler: Handles parse exception errors by passing the parse exception up as a SAXException.
error(SAXParseException) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.XMLErrorHandler: Handles parse exception errors by passing the parse exception up as a SAXException.
ERROR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
ERROR - Static variable in class gov.nih.mipav.model.file.FileUtility: Ill defined file type.
ERROR - Static variable in class gov.nih.mipav.view.DICOMDisplayer: An error type message is one thrown in an exception or if the files were not saved.
ERROR_DIFFUSION - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm: Error Diffusion Halftoning
error_exit(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
error_limiter - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
error_log - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
error_log() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
error_log_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
error_msg - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
error_msg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
errorcheck(int, int, double, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
errorCleanUp(String, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Display string pass into the method.
errorComponent - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
errorComponent - Variable in class gov.nih.mipav.view.JPanelEdit: when necessary To CheckFields, and there is a problem with the panel such that a valid panel value cannot be made, the particular component which has a bad value will be pointed to here.
ErrorDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
ErrorDirectory(String) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
errorFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
errorFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
errorFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
errorFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
errorFlag - Variable in class gov.nih.mipav.model.algorithms.Bessel: errorFlag = 0, normal return - computation completed errorFlag = 1, input error - no computation errorFlag = 2, overflow - no computation, Real(z) large on UNSCALED_FUNCTION errorFlag = 3, ABS(Z) or initialOrder + sequenceNumber - 1 large, computation but losses of significance by arguemnt reduction produce less than half of machine accuracy errorFlag = 4, ABS(Z) or initialOrder + sequenceNumber - 1 too large, No computation because of complete losses of significance by argument reduction errorFlag = 5, Error, no computation, argument termination condition not met Length of array passed in must be 1.
errorFlag - Variable in class gov.nih.mipav.model.algorithms.BesselEP: errorFlag = 0, normal return - computation completed errorFlag = 1, input error - no computation errorFlag = 2, overflow - no computation, Real(z) large on UNSCALED_FUNCTION errorFlag = 3, ABS(Z) or initialOrder + sequenceNumber - 1 large, computation but losses of significance by arguemnt reduction produce less than half of machine accuracy errorFlag = 4, ABS(Z) or initialOrder + sequenceNumber - 1 too large, No computation because of complete losses of significance by argument reduction errorFlag = 5, Error, no computation, argument termination condition not met Length of array passed in must be 1.
errorFlag - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
errorInMaskRoutine - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
errorStatus - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
errorStatus - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
errorString - Variable in class gov.nih.mipav.view.JPanelEdit: when necessary To CheckFields, and there is a problem with the panel such that a valid panel value cannot be made, the problem will be reported in this String.
errStatus - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
errStatus - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: Parameter giving information on the termination of the algorithm errStatus[0] = 0 normal and reliable termination of the routine errStatus[0] = 1 The computations are terminated because the bound on the number of evaluations of the user supplied Laplace function has been achieved.
ERRTOL - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
ERRTOLb - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
ESC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
escapeSpecialCharacters(String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Escape special list characters with backslashes.
esd - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: sd (u, hk) = sn (u, hk)/ dn(u, hk)
esd_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables writing of ESD, in case of activated JPWL
eseedNo - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
eseedRandom - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
eSeedToRandom - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
esize - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
esize - Variable in class gov.nih.mipav.model.file.FileNIFTI
esizeArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
esn - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: sn (u, hk)
essedConstant - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
est_type - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
Estats(Vector<libdt.Dytex>, Vector<libdt.Dytex>, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Estats
EstCParamGradientMatrix(Vector<CDVector>, Vector<CDVector>, CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Estimates the Jacobian of the model parameters given a set of displacement vectors and the optimum model parameters for the training set.
estdbdtPer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 846 PSD estimated limit in units of percent.
estdbdtts - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 850 PSD estimated limit in Tesla/sec.
estErr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
estErr - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: Estimate of the absolute error abs(f(t) - result[0]).
estimate(float[][][][], double[], double[][], byte[][][], boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE: estimate Use LLMSE to estimate tensors from DW imaging data on a voxel-wise basis.
estimate(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
estimate(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
estimate(ModelImage, ModelImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE: Uses LLMSE to estimate tensors from DW imaging data on a voxel-wise basis.
estimate(ModelImage, ModelImage, GMatrixd, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimate_kernel_from - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
estimate_noise_fast(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
estimateBallAndStickCamino(float[][][][], byte[][][], BallStickInversion, float[][][][], float[][][][], float[][][][], float[][][][], float[][][][]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimateBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
estimateCamino(float[][][][], byte[][][], int, DW_Scheme, DT_Inversion, float[][][][], float[][][][], float[][][][]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimateCamino(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE: Uses Camino algorithms to estimate tensors from DW imaging data on a voxel-wise basis.
estimateCaminoRESTORE(float[][][][], byte[][][], float[][][], float[][][][], float[][][][], float[][][][], DW_Scheme) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimateCaminoThreeTensor(float[][][][], byte[][][], ThreeTensorInversion, float[][][][], float[][][][], float[][][][], float[][][][], float[][][][], float[][][][], float[][][][], float[][][][]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimateCaminoTwoTensor(float[][][][], byte[][][], TwoTensorInversion, float[][][][], float[][][][], float[][][][], float[][][][], float[][][][], float[][][][]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimatedFFT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedIFFT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedImageSpectrum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedSpectrumImags - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimatedSpectrumReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
estimateEllipsoid() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Approximate the brain surface by an ellipsoid.
estimateEllipsoid() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Approximate the brain surface by an ellipsoid.
estimateEllipsoid() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Approximate the brain surface by an ellipsoid.
estimateInitial() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
estimateInitial() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
estimateInitial() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
EstimateK(CDMatrix, CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: Performs k-estimation.
estimateNoiseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
estimateNoiseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
estimateNoiseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
estimateNoiseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
estimateNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
estimateOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
estimateParameters() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: 1.
EstimatePose(ModelSimpleImage, CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Estimate the pose of a shape using the pose regression matrix.
estimates - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
estimates - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
estimateScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
estimateSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
estimateSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
estimateSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
estimateSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
estimateSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
estimateSlope - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
estimateSphere() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Approximate the intial brain surface by an sphere.
EstimateTensorLLMSE - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
EstimateTensorLLMSE() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
estimateWhiteMatter(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: 5.
estimateWithSphereBET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Parameter for brain extraction by default set to false
estimateWithSphereBET - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Flag indicates BET should approximate initial brain by sphere.
estimateWithSphereCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Check box corresponding to estimateSphereBET.
EstimateWorkSizeForQR(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EstPoseGradientMatrix(Vector<CDVector>, Vector<CDVector>, CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Estimates the Jacobian of the pose parameters given a set of displacement vectors and the optimum model parameters for the training set.
EstPredictionMatrices(Vector<CDVector>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the prediction matrices for pose and parameter prediction.
EstRegressionMatrices(Vector<CDVector>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the regression matrices for pose and parameter prediction.
estTensorPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
esub(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the solution to the subtraction of two numbers in the form of base and exponent.
esum(int, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
eta - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
eta - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
eta - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
eta - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyPerSolveOptions
eta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
eta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_c4 - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_f_range - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_hrbu - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_np_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_p_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
eta_range_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ETACF - Variable in class gov.nih.mipav.model.algorithms.CVODES
etaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
ETAMIN - Variable in class gov.nih.mipav.model.algorithms.CVODES
ETAMX1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
ETAMX2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
ETAMX3 - Variable in class gov.nih.mipav.model.algorithms.CVODES
ETAMXF - Variable in class gov.nih.mipav.model.algorithms.CVODES
etchedBorder - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
etchedBorder - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
etchedBorder - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder: A border used for each toolbar.
etdfs(int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ETermCode - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermConsecMaxStepMax - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermDeltaFuncVal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermGradTol - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermLineSearch - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermMaxFuncEval - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermMaxIterations - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermNoStop - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermStepTol - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
etermUnknown - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
eTFid - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: Transfer function types.
etheor(double, boolean, boolean, double[], double[], double[], double[], boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
ETHRESH - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ETL - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 640 Echo train length.
ETOptions - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
ETREE - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
EUCLIDEAN_SQUARED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
EUCLIDEAN_SQUARED - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
EuclideanButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
euclideanDistance(double[], double[]) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calculates the Euclidean distance.
euclideanDistance(double[], double[]) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calculates the Euclidean distance.
EuclideanDistance(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: EuclideanDistance.
EuclideanDistance(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: EuclideanDistance.
euclideanDistance2D(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
euclideanSquared - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
EuclideanSquared() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
EUL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
EulerAnglesToRotationMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
EulerAnglesToRotationMatrixIsOrthonormal() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EulerAnglesToRotationMatrixOnAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EulerC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
EulerToQuat(Vector3d, Quat4d) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform Euler angle to quaterion.
eval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
eval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean
eval(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean
eval(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
eval(double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
eval(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: evaluate this polynomial for the specified value.
eval_clustering_accuracy(Matrix, int[], int, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
evalCutRes(int[], AlgorithmMeanShiftClustering.fams_cut[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
evalCutRes(AlgorithmMeanShiftClustering.famsPoint, AlgorithmMeanShiftClustering.fams_cut[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
EvalFunction(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: Fuction to be optimized.
EvalFunction(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: function and gradient evaluation methods
EvalFunction(CDVector) - Method in interface gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeFuncBase: evaluates the function value at postion vX
EvalGradient(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: evaluates the analytic gradient at postion vX (if exists)
EvalGradient(CDVector, CDVector) - Method in interface gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeFuncBase: evaluates the analytic gradient at postion vX (if exists)
EvalGradient(CDVector, CDVector, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: function and gradient evaluation methods
evalObjfun(double[]) - Method in class gov.nih.mipav.model.algorithms.NMSimplex
evalSeg - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Algorithm to run from this dialog.
evalSeg - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Algorithm to run from this dialog.
evaluate(double) - Method in class gov.nih.mipav.model.structures.BSplineKernelFunction
evaluate(double) - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
evaluate(double) - Method in class gov.nih.mipav.model.structures.RealPolynomial
evaluate(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
evaluate(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
Evaluate(boolean, double[], double[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
Evaluate(boolean, double[], double[], double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
Evaluate(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
Evaluate(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
Evaluate(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
Evaluate(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.FirstOrderFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFirstOrderFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticTestFunction
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock2
Evaluate(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.diffGaussians
Evaluate(double[], double[], double[], double[], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
Evaluate(double, boolean, CeresSolver.FunctionSample) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunction
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrivialLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss
Evaluate(double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CubicInterpolator
Evaluate(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CubicInterpolator
Evaluate(double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
Evaluate(double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
Evaluate(CeresSolver.EvaluateOptions, double[], double[], double[], double[], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
Evaluate(CeresSolver.EvaluateOptions, double[], double[], double[], double[], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
Evaluate(CeresSolver.EvaluateOptions, double[], double[], double[], double[], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
Evaluate(CeresSolver.EvaluateOptions, double[], double[], double[], double[], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
Evaluate(CeresSolver.EvaluateOptions, double[], Vector<Double>, Vector<Double>, CeresSolver.CRSMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
Evaluate(CeresSolver.EvaluateOptions, Vector<Double>, double[], Vector<Double>, Vector<Double>, CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
Evaluate(CeresSolver.EvaluateOptions, Vector<Double>, double[], Vector<Double>, Vector<Double>, CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
Evaluate(CeresSolver.EvaluateOptions, Vector<Double>, double[], Vector<Double>, Vector<Double>, CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
Evaluate(CeresSolver.EvaluateOptions, Vector<Double>, double[], Vector<Double>, Vector<Double>, CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EasyCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SizeTestingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Bennett5CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.BoxBODCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut1CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut2CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.DanwoodCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Eckerle4CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ENSOCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss1CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss2CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss3CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Hahn1CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Kirby2CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos1CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos2CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos3CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralaCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralbCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralcCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisraldCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.NelsonCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat42CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat43CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Roszman1CostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ThurberCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadJacobianCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadResidualCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BardFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BealeFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BIGGS_EXP6Function
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction4
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Box3DFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownAndDennisFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownBadlyScaledFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DestructorCountingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction2
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction4
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FailingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothJacobianFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GaussianFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GoodCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GulfResearchAndDevelopmentFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.HelicalValleyFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.JennrichAndSampsonFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.KowalikAndOsborneFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.LocallyParameterizedCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MeyerFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NoJacobianUpdateCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NoResidualUpdateCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NumParameterBlocksCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne1Function
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne2Function
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterSensitiveCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellBadlyScaledFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularJacobianFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction2
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction4
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction3
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction4
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryIdentityCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WoodFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1FittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2FittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussSecondStandardDeviationFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculationCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_cen_r
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_uncen
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.threeParameterFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.twoParameterFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Bennett5CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.BoxBODCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut1CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut2CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.DanwoodCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Eckerle4CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ENSOCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss1CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss2CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss3CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Hahn1CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Kirby2CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos1CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos2CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos3CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralaCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralbCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralcCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisraldCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.NelsonCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat42CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat43CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Roszman1CostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ThurberCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadJacobianCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadResidualCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BardFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BealeFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BIGGS_EXP6Function
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Box3DFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownAndDennisFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownBadlyScaledFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DestructorCountingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction2
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FailingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothJacobianFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GaussianFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GoodCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.GulfResearchAndDevelopmentFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.HelicalValleyFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.JennrichAndSampsonFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.KowalikAndOsborneFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.LocallyParameterizedCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MeyerFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NoJacobianUpdateCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NoResidualUpdateCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NumParameterBlocksCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne1Function
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne2Function
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterSensitiveCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellBadlyScaledFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularJacobianFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction2
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction3
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WoodFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1FittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2FittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussSecondStandardDeviationFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculationCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_cen_r
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_uncen
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.threeParameterFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.twoParameterFittingCostFunction
Evaluate(Vector<double[]>, double[], double[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction
Evaluate(Vector<double[]>, double[], Vector<Matrix>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
evaluate_last_parameter_hash - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
evaluate_num_calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
evaluate_options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
evaluate_polynomial(double[], double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
evaluate_preparers_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
evaluate_scratch_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
EvaluateAndCompare(CeresSolver.ProblemImpl, int, int, double, double[], double[], double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluateCostFunction(CeresSolver.CostFunction, Vector<double[]>, Vector<CeresSolver.LocalParameterization>, Vector<Double>, Vector<Matrix>, Vector<Matrix>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EvaluateCostFunctor(Vector<double[]>, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
evaluateDerivative(double) - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
EvaluatedFdc(Matrix, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatedFdr(Matrix, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluateDynamic(Vector<double[]>, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
EvaluateF(Matrix, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluateGradientAndJacobian(boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
EvaluateGradientNorms(CeresSolver.Evaluator, double[], CeresSolver.LineSearchMinimizer.State, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer
EvaluateGradientNorms(CeresSolver.Evaluator, Vector<Double>, CeresSolver.LineSearchMinimizer.State, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer
EvaluateJacobianColumn(CeresSolver.NumericDiffMethodType, int, int, CostFunctor, int, double, int, int, int, double[], double[], double[][], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EvaluateJacobianForParameterBlock(CeresSolver.NumericDiffMethodType, int, int, int, int, int, int, int, int, int, int, int, int, int, CostFunctor, double[], CeresSolver.NumericDiffOptions, int, int, int, double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EvaluateJacobianForParameterBlock(CeresSolver.NumericDiffMethodType, int, int, int, int, int, int, int, int, int, int, int, int, int, CostFunctor, double[], CeresSolver.NumericDiffOptions, int, int, int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EvaluateModel(CAAMModel, ModelImage, ModelImage, String, String, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Wrapper to optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModel(CAAMModel, ModelImage, ModelImage, String, String, boolean, boolean, boolean, boolean, CAAMLowerBounds) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModel(CAAMModel, ModelImage, String, String, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Wrapper to optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModel(CAAMModel, ModelImage, String, String, boolean, boolean, boolean, boolean, CAAMLowerBounds) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Wrapper to optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModel(CAAMModel, String, String, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModel(CAAMModel, String, String, boolean, boolean, boolean, boolean, CAAMLowerBounds) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Optimizes a set of images and compares the result to a ground truth annotation.
EvaluateModelSeq(CAAMModelSeq, String, String, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Wrapper to optimize a set of images and compares the result to a ground truth annotation using a sequence of AAMs.
EvaluateModelSeq(CAAMModelSeq, String, String, boolean, boolean, boolean, boolean, CAAMLowerBounds) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Optimizes a set of images and compares the result to a ground truth annotation using a sequence of AAMs.
evaluateNthDerivative(double, int) - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
EvaluateOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
EvaluatePolynomial(Vector<Double>, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
EvaluateRiddersJacobianColumn(CeresSolver.NumericDiffMethodType, int, int, CostFunctor, int, double, CeresSolver.NumericDiffOptions, int, int, int, double[], double[], double[][], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
evaluateRPNExpression(double, double, String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Method that evaluates the RPN expression and returns the value
EvaluateScratch() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
evaluateShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Evaluate the auto segmentation generated VOIs shapes.
evaluateShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Evaluate the auto segmentation generated VOIs shapes.
evaluateShapeDescriptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Evaluate the AAM segmented VOIs with MIPAV VOI properties.
EvaluateSubspaceModel(Vector2d) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
evaluateToRPN(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method that determines the RPN
evaluation_callback - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
evaluation_callback - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
EvaluationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EvaluationCallback
EvaluationCallbackWithLineSearchMinimizerArmijoBisection() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerArmijoCubic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerArmijoQuadratic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerWolfeBfgsCubic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerWolfeBfgsQuadratic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerWolfeLbfgsCubic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithLineSearchMinimizerWolfeLbfgsQuadratic() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluationCallbackWithTrustRegionMinimizer() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
evaluations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
evaluations - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: Number of evaluations of user supplied Laplace function.
EvaluationToString(Vector<double[]>, double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
EvaluationToString(Vector<double[]>, double[], double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
evaluator - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
evaluator - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
Evaluator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
evaluator_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
evaluator_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
evaluator_options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
evaluator_options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
EvaluatorOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
EvaluatorRespectsParameterChanges() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTest(CeresSolverTest.EvaluatorTestOptions, String) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestEvaluatorAbortsForResidualsThatFailToEvaluate() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestEvaluatorAbortsForResidualsThatFailToEvaluate() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestMultipleResidualProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestMultipleResidualProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestMultipleResidualProblemWithSomeConstantParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestMultipleResidualProblemWithSomeConstantParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestMultipleResidualsWithLocalParameterizations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestMultipleResidualsWithLocalParameterizations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestOptions(CeresSolver.LinearSolverType, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTestOptions
EvaluatorTestSingleResidualProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestSingleResidualProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestSingleResidualProblemWithNuisanceParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestSingleResidualProblemWithNuisanceParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
EvaluatorTestSingleResidualProblemWithPermutedParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
EvaluatorTestSingleResidualProblemWithPermutedParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Evalues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.PData
Evalues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.SData
evar(double[], int, double[], boolean, boolean[], double[], int, double, int, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
evarCalled - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
Evectors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.PData
Evectors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.SData
evenDistribution() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Evenly distributed the controls points of linear transfer function.
evenDistribution() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Evenly distributed the controls points of linear transfer function.
evenDistribution() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Switch the histogram component to even distribution linear transfer mode.
evenDistributionFunctions() - Method in class gov.nih.mipav.model.structures.ModelRGB: Creates the R, G, and B transfer functions to produce a gray scale LUT.
EVENT - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
EVENT() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT
EVENT(double, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT
EVENT_CHANGE_ALL - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
EVENT_CHANGE_ALL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: on a viewChanged event change both the view position and direction vector
EVENT_CHANGE_ALL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: on a viewChanged event change both the view position and direction vector
EVENT_CHANGE_BRANCH - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
EVENT_CHANGE_BRANCH - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: on a viewChanged event change the fly path branch
EVENT_CHANGE_BRANCH - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: on a viewChanged event change the fly path branch
EVENT_CHANGE_ORIENTATION - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
EVENT_CHANGE_POSITION - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
EVENT_CHANGE_POSITION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: on a viewChanged event change just the view position
EVENT_CHANGE_POSITION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: on a viewChanged event change just the view position
EVENT_CHANGE_VIEW - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: on a viewChanged event change just the view direction
EVENT_CHANGE_VIEW - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: on a viewChanged event change just the view direction
EVENT_REC - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
EVENT_REC() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT_REC
EVENT_RESET_ORIENTATION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: on a viewChanged event change just the view orientation
EVENT_RESET_ORIENTATION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: on a viewChanged event change just the view orientation
eventDescription - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
eventDescription - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
eventDispatched(AWTEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
EventLogger(String) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
events - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Vector that holds mouse or change events.
events - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Vector that holds mouse or change events.
events - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
events_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
eventTime - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
eventTime - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
eventType - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
eventType - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
eventVector - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Seqence of mouse events ( press, shift,and release as individual mouse event).
eventVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Global mouse event vector.
eventVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Global mouse event vector.
EVERY_POINT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
EVERY_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
everyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
everything - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Onscreen objects.
everything - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Tabbed pane that holds all components.
everything - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Tabbed pane that holds all components.
everything - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Tabbed pane that holds all components.
evolveBoundary2D(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
evolveContour(VOIBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
evolveDirection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary how the VOI boundary can move - in and/or out.
evreuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
evreuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
evt - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Mouse event
evt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse: DOCUMENT ME!
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: int centerX, centerY;.
evt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: int centerX, centerY;.
ew - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true east-west direction calculated.
ew - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true east-west direction calculated.
ew - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
ew - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ewCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
ewCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ewt(CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
ewtTestMode(CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
ExactLineSearch(CDVector, double, CDVector, CDVector, CDVector, double[], boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Perform exact line search Input: xc: parameter fc: function value at xc g: gradient at xc p: search direction Output: xplus: new parameter fplus: function value for new parameter maxtaken: max taken in line search return termination code
exAllocKey - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 334 - 13 bytes Process that allocated this record.
examine_app0(libjpeg.jpeg_decompress_struct, byte[], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
examine_app14(libjpeg.jpeg_decompress_struct, byte[], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
examineClass(Class) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
examName - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: par/rec examName
examName - Variable in class gov.nih.mipav.model.file.FilePARREC: exam name
examNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 8 - Read as unsigned short.
example - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
exampleLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
exampleLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
exampleLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
exampleLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
examType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 305 - 3 bytes i.e.
examType - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
exceptions - Static variable in class gov.nih.mipav.view.ViewUserInterface: Exception logging file
exchangeXY - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
exChecksum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 356 (internal use) Exam Record Checksum.
excitationArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
excitationsNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
excitationsNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
excitationWavelength - Variable in class gov.nih.mipav.model.file.FileInfoCZI
excitationWavelength0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelength1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelength2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelength3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelengthChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelengthChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelengthChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
excitationWavelengthChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
Exclude - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams
excluder - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: The Exclusion selector.
excluder - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
ExcluderOptionsActionListener() - Constructor for class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.ExcluderOptionsActionListener
excludeSelection - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Lists available exclusion types
exclusiveOrButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
exComplete - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 360 (internal use) Exam complete flag.
exDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 208 - Exam date/time stamp.
exDeltaCount - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 348 (internal use) Number of updates to header.
exDesc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 282 - 23 bytes Exam Description.
exDiskID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 6 - 1 byte (internal use) Disk ID for this exam.
exec() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Do resampling.
exec(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This is the method that calculates the FFT Perform a data centering operation after the forward FFT Perform a data centering operation before the inverse FFT Note that a frequency filter operation performs a forward FFT.
exec(float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This is the method that calculates the FFT Perform a data centering operation after the forward FFT Perform a data centering operation before the inverse FFT Note that a frequency filter operation performs a forward FFT.
execute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
execute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
execute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
execute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
execute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
Execute(int, String[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
Execute(String, String, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
Execute(Spatial, Vector3f, Vector3f, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
executeInterleaved(CLCommandQueue, int, CLFFTPlan.CLFFTDirection, CLBuffer<FloatBuffer>, CLBuffer<FloatBuffer>, CLEventList, CLEventList) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan: Calculate FFT on interleaved complex data.
executePlanar(CLCommandQueue, int, CLFFTPlan.CLFFTDirection, CLBuffer<FloatBuffer>, CLBuffer<FloatBuffer>, CLBuffer<FloatBuffer>, CLBuffer<FloatBuffer>, CLEventList, CLEventList) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan: Calculate FFT of planar data.
ExecuteRecursive(Spatial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
execution_summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
execution_summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
execution_summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TypedLinearSolver
ExecutionSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ExecutionSummary
exFilter - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter: must have these 3:.
exFormat - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 308 Exam format.
EXHAUSTIVEOPT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
exhaustiveSearch(double[], AlgorithmRegVOILandmark.CostFunction) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Exhaustive search for global minimum.
eXIf - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
ExifDescriptorBase(T) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
ExifDirectoryBase() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase
ExifDirectoryTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest
EXIFIFD - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFIFD - Static variable in class gov.nih.mipav.model.file.FileTiff
ExifIFD0Descriptor(MetadataExtractor.ExifIFD0Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Descriptor
ExifIFD0DescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifIFD0DescriptorTest
ExifIFD0Directory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory
ExifImageDescriptor(MetadataExtractor.ExifImageDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifImageDescriptor
ExifImageDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifImageDirectory
ExifInteropDescriptor(MetadataExtractor.ExifInteropDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifInteropDescriptor
ExifInteropDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifInteropDescriptorTest
ExifInteropDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifInteropDirectory
ExifReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifReader
ExifReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest
ExifSubIFDDescriptor(MetadataExtractor.ExifSubIFDDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDescriptor
ExifSubIFDDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest
ExifSubIFDDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory
EXIFTAG_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_CUSTOM_RENDERED - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_CUSTOM_RENDERED - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_DATE_TIME_DIGITIZED - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_DATE_TIME_DIGITIZED - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_DATE_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_DATE_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_DIGITAL_ZOOM_RATIO - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_DIGITAL_ZOOM_RATIO - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_EXIF_VERSION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_EXIF_VERSION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_EXPOSURE_BIAS_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_EXPOSURE_BIAS_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_EXPOSURE_PROGRAM - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_EXPOSURE_PROGRAM - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FILE_SOURCE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FILE_SOURCE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FLASH - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FLASH - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FLASHPIX_VERSION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FLASHPIX_VERSION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FNUMBER - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FNUMBER - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FOCAL_PLANE_X_RESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FOCAL_PLANE_X_RESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_FOCAL_PLANE_Y_RESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_FOCAL_PLANE_Y_RESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_GAIN_CONTROL - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_GAIN_CONTROL - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_ISO_SPEED_RATINGS - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_ISO_SPEED_RATINGS - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_LIGHT_SOURCE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_LIGHT_SOURCE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_MAKER_NOTE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_MAKER_NOTE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_MAX_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_MAX_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_PIXEL_X_DIMENSION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_PIXEL_X_DIMENSION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_PIXEL_Y_DIMENSION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_PIXEL_Y_DIMENSION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SATURATION - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SATURATION - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SCENE_CAPTURE_TYPE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SCENE_CAPTURE_TYPE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SCENE_TYPE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SCENE_TYPE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SENSING_METHOD - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SENSING_METHOD - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_SHUTTER_SPEED_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_SHUTTER_SPEED_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_USER_COMMENT - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_USER_COMMENT - Static variable in class gov.nih.mipav.model.file.FileTiff
EXIFTAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.FileSVS
EXIFTAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.FileTiff
ExifThumbnailDescriptor(MetadataExtractor.ExifThumbnailDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDescriptor
ExifThumbnailDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ExifThumbnailDescriptorTest
ExifThumbnailDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory
ExifTiffHandler(MetadataExtractor.Metadata, MetadataExtractor.Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
exifVersion - Variable in class gov.nih.mipav.model.file.FileSVS
exifVersion - Variable in class gov.nih.mipav.model.file.FileTiff
exists - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
exists(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Search the set to see if the input element currently exists.
exists(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Search the set to see if the input element currently exists.
exists(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Search the set to see if the input element currently exists.
exists(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Search the set to see if the input element currently exists.
exists(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
exists(int, int[], int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: Checks for the existance of the number rnum in the unsorted array rlist.
exists(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
exit - Variable in class gov.nih.mipav.view.dialogs.GuiBuilder
exit() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Exit the decoding process according to the isChildProcess variable
exit() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Exit the decoding process according to the isChildProcess variable
EXIT_FAILURE - Static variable in class gov.nih.mipav.model.file.libjpeg
EXIT_FAILURE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
EXIT_FAILURE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
exit_input_error(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
exit_input_error(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
exit_input_error(int, Throwable) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
exit_input_error(int, Throwable) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
EXIT_SUCCESS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
EXIT_SUCCESS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
exit_with_help() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
exit_with_help() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
exit_with_help() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
exit_with_help() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
exit_with_help() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
exitCmdLineOnError - Variable in class gov.nih.mipav.view.ViewUserInterface: error handling for cmd line, if set to false will not exit on MipavUtil.displayError()
exitCode - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: The exit code of the run method
exitCode - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: The exit code of the run method
exitCode - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: The exit code of the run method
exitCode - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: The exit code of the run method
exitStatus - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
exitStatus - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
exitStatus - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar that indicates why the return was taken.
exitStatus - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar that indicates why the return was taken.
ExitStatus - Enum in gov.nih.mipav.view.dialogs: These enumerations are used by the GuiBuilder to indicate the pre-processing results of user entry fields for the user interface.
ExitStatus() - Constructor for enum gov.nih.mipav.view.dialogs.ExitStatus
exitStatusImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
exitStatusImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
exLastMod - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 328 Date/Time of Last Change.
exModelCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 424 (internal use) Number of 3D Models.
exModelNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 420 (internal use) Last Model Number Used.
exModelsData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 432.
exModelsLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 428.
exNumArch - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 368 (internal use) Number of Series Archived.
exNumSeries - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 372 (internal use) Number of Series Existing.
exNumUnSer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 384 (internal use) Number of Unstored series.
exp() - Method in class gov.nih.mipav.util.DoubleDouble: For all real, x exp(x) = 1 + x + x**2/2!
EXP - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: EXPand reference component(s) segment identifier.
EXP - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
EXP - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
exp_comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: expected number of components at the decoder
exp_date - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: String with a max character length of 10 used to indicate the experiment date.
exp_date - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: String with a max character length of 10 used to indicate the experiment date.
exp_date - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
EXP_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
exp_square_diff(Matrix, Matrix, Matrix, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
exp_time - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: String with a max character length of 10 used to indicate the experiment time.
exp_time - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: String with a max character length of 10 used to indicate the experiment time.
exp_time - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
exp0p1 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
exp0p1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
exPadding - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 508 - 516 bytes.
expand(int, int, int[], int[][], int[][], int, int[], int[], int[], int[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
Expand(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Expands the shape by moving each model point 'nPixels' perperdicular to the shape contour (that is: along the model point normal).
Expand(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Expands all shapes (contraction can be done by using a negative nPixels).
EXPAND - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: DOCUMENT ME!
EXPAND - Static variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
EXPAND_CONTRACT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: DOCUMENT ME!
EXPAND_CONTRACT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
expand2(int, int, int[], int[], int[][], int, int[], int[], int[], int[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
expandAll(JTree, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
expandAll(JTree, TreePath, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
expandButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
expandContractButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
expandedLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: (xDim2+2)*(yDim2+2)
expanders - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
ExpandImg2DyadicSize(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Expands an image to have dynamic size.
ExpandImg2DyadicSize(ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Expands an image to have dyadic size.
ExpandMatrix2DyadicSize(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: This method expands a matrix to have dynamic size, i.e. nrows and ncols that are powers of two.
expandPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler
expandReferenceComponents(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
expandReferenceComponents(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
expandTags - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: expand dicom tags button.
expandVOI - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: final VOI
expansion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
expansion - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
expansions - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t
expap1 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
expap1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
exparg(int) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
exparray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
exparray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC
expButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
expButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
ExpCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpCostFunction
expectation(double[][], AlgorithmMixGaussEM.model) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
ExpectClose(double, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
ExpectCostFunctionEvaluationIsNearlyCorrect(CeresSolver.CostFunction, CeresSolver.NumericDiffMethodType, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EasyFunctor
ExpectCostFunctionEvaluationIsNearlyCorrect(CeresSolver.CostFunction, CeresSolver.NumericDiffMethodType, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalFunctor
ExpectCostFunctionEvaluationIsNearlyCorrect(CeresSolver.CostFunction, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialFunctor
ExpectCostFunctionEvaluationIsNearlyCorrect(CeresSolver.CostFunction, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
expected_jacobian_x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
expected_jacobian_y_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
expected_jacobian_z_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
expected_num_nonzeros - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
expected_residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
ExpectedEvaluation() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
expectedFmt - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
ExpectEmpty() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ExpectEqualToCompressedRowSparseMatrixReference() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ExpectEqualToDenseReference() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ExpectMatricesClose(double[], double[], double, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ExpectMatricesClose(Matrix, Matrix, double, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
expectNear(double, double, double, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
ExpectParameterBlockContains(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectParameterBlockContains(double[], CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectParameterBlockContains(double[], CeresSolver.ResidualBlock, CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectParameterBlockContains(double[], CeresSolver.ResidualBlock, CeresSolver.ResidualBlock, CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectParameterBlockContains(double[], CeresSolver.ResidualBlock, CeresSolver.ResidualBlock, CeresSolver.ResidualBlock, CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectParameterBlockContainsResidualBlock(double[], CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
ExpectSize(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
Experiment(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment: Creates a new Experiment object.
Experimenter(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: Creates a new Experimenter object.
experimenterID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: Attributes.
experimenterName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
experimenterRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
experimenterRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment
experimenterRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Project
ExperimenterRef(Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.ExperimenterRef: Creates a new ExperimenterRef object.
experimenters - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
experimentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.ExperimenterRef
experimentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.ExperimentRef
experimentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment
experimentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
ExperimentRef(Integer, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.ExperimentRef: Creates a new ExperimentRef object.
experiments - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
expFuzzifier - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Exponential fuzzifier between 1.0 and 2.0
expFuzzifier - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
expGvfBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
expGvfBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
ExpHeader() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader
exPhotonCnt - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
exPhotonCnt - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
expImgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
expImgBuffer - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
EXPLICIT - gov.nih.mipav.model.file.FileInfoDicom.VRtype: Used to indicate that the DICOM tags are explicit (i.e they have VRs).
EXPLICIT_BIG_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil: Static that defines EXPLICIT_BIG_ENDIAN.
EXPLICIT_LITTLE_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil: Static that defines EXPLICIT_LITTLE_ENDIAN.
explore() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
explore() - Method in class gov.nih.mipav.view.VOIContourNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
explore() - Method in class gov.nih.mipav.view.VOIFrameNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
explore() - Method in class gov.nih.mipav.view.VOIGroupNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
explore() - Method in class gov.nih.mipav.view.VOIOrientationNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
explore(ViewImageFileFilter) - Method in class gov.nih.mipav.view.ViewFileTreeNode: Adds the children of this file to the this FileNode for display in a JTree. adjusts the explored variable.
Explore(CDVector, CDVector, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS
explored - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
explored - Variable in class gov.nih.mipav.view.ViewFileTreeNode: DOCUMENT ME!
exploreDirectoriesOnly() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Accessor to whether or not the FileNode is to only explore Directories.
exploreDirectoriesOnly(boolean) - Method in class gov.nih.mipav.view.ViewFileTreeNode: Sets the FileNode to view only directories when it goes exploring.
expm1(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
EXPM1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
expmax_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol
expmin_calcjTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol
expmin_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol
expn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_stepsize_t: exponent
expn(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
EXPN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
EXPN_MAX - Variable in class gov.nih.mipav.model.algorithms.SIFT: < ::fast_expn table size @internal
EXPN_SZ - Variable in class gov.nih.mipav.model.algorithms.SIFT
expn_tab - Variable in class gov.nih.mipav.model.algorithms.SIFT: < ::fast_expn table max @internal
exponent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: 1/(qValue - 1).
exponent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
exponent - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: 1/(qValue - 1).
EXPONENTIAL_COST_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
exponential_draw(double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
EXPONENTIAL_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
EXPONENTIAL_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
EXPONENTIAL_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
ExponentialCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialCostFunction
exponentialFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
ExponentialFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialFunctor
export(int[], boolean[], boolean, ViewJProgressBar, int, int) - Method in class gov.nih.mipav.model.structures.ModelImage: Exports data based on the mapping the current ModelImage to a new ModelImage oriented based on the axisOrder and axisFlip arrays.
export(int[], boolean[], int, int, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Exports data based on the mapping from ModelImage space to Patient space.
export(int, int, int, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Exports data based on the mapping from ModelImage space to Patient space.
exportAllPoints() - Method in class gov.nih.mipav.model.structures.VOI: Get Vector3fs from the VOI; can only use with Point.
exportArrays(float[], float[]) - Method in class gov.nih.mipav.model.structures.TransferFunction: Exports the float arrays of the points of the curve.
exportArrays(float[], float[], float[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Exports the float arrays of the points of the curve.
exportArrays(int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Exports the arrays of the points of the curve in int array format.
exportComplexData(int, int, float[], float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data to the real values and the images values arrays.
exportComplexSliceXY(int, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export XY slice magnitude data into values array.
exportData(float[], int, int) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Simple accessor to copy data from this class's data buffer.
exportData(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array, in the native type of the model image.
exportData(int, int, byte[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportData(int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data in values array.
exportData(int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data to values array.
exportData(int, int, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportData(int, int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data to values array.
exportData(int, int, long[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportData(int, int, short[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportData(int, int, Number[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportData(int, int, BitSet) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array.
exportDataNoLock(int, int, byte[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array WITHOUT locking.
exportDataNoLock(int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data into values array WITHOUT locking.
exportDataNoLock(int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array WITHOUT using locking.
exportDataNoLock(int, int, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array WITHOUT locking.
exportDataNoLock(int, int, long[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data into values array WITHOUT locking.
exportDataNoLock(int, int, short[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data into values array WITHOUT locking.
exportDataNoLock(int, int, Number[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data into values array WITHOUT locking.
exportDataNoLock(int, int, BitSet) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data into values array WITHOUT locking.
exportDataUseMask(int, int, boolean, byte[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Export data into values array.
exportDataUseMask(int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Export data into values array.
exportDComplexData(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data to the real values and the imaginary values arrays.
exportDiagonal(int, int, int[], Vector3f[], float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: ShowDiagonal samples the ModelImage data along a non-axis aligned plane.
exportDiagonal(int, int, int[], Vector3f[], float[], boolean, boolean, Vector<BitSet>, boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage
exportDiagonal(int, int, int[], Vector3f[], float[], boolean, BitSet, Vector<BitSet>, boolean[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
exportDiagonal(BitSet, int, int, int[], Vector3f[], float, boolean, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: ShowDiagonal samples the ModelImage data along a non-axis aligned plane.
exportDMagData(int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export magnitude data to values array.
exportIndexedLUT() - Method in class gov.nih.mipav.model.structures.ModelLUT: This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue.
exportIndexedLUT(int[]) - Method in class gov.nih.mipav.model.structures.ModelLUT: This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue.
exportIndexedLUTMin(ModelLUT, byte[]) - Static method in class gov.nih.mipav.model.structures.ModelLUT
exportIndexedLUTMin(ModelLUT, byte[], int) - Static method in class gov.nih.mipav.model.structures.ModelLUT
exportIndexedLUTMin(ModelRGB, byte[]) - Static method in class gov.nih.mipav.model.structures.ModelLUT
exportIndexedRGB() - Method in class gov.nih.mipav.model.structures.ModelRGB: This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue.
exportMagData(int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export magnitude data to values array.
exportMagData(int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export magnitude data to values array.
exportPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
exportPoint() - Method in class gov.nih.mipav.model.structures.VOI: Returns the first point.
exportPoint() - Method in class gov.nih.mipav.model.structures.VOIPoint: Method to access point VOI coordinate
exportPoint() - Method in class gov.nih.mipav.model.structures.VOIText: Method to access point VOI coordinate.
exportPoints(int) - Method in class gov.nih.mipav.model.structures.VOI: Get Vector3fs from the VOI; can only use with Point.
exportPolygon() - Method in class gov.nih.mipav.model.structures.PointStack: Repackages arrays into a java polygon returns points in polygon form.
exportPolygon() - Method in class gov.nih.mipav.model.structures.VOIContour: Exports the points of the contour as a polygon (z data can not be encoded in the polygon).
exportPolygon(int) - Method in class gov.nih.mipav.model.structures.VOI
exportRGB_LUT(boolean) - Method in class gov.nih.mipav.model.structures.ModelLUT: This is a method to export a 2D float array of the LUT.
exportRGBData(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array.
exportRGBData(int, int, int, byte[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array.
exportRGBData(int, int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array.
exportRGBData(int, int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array.
exportRGBData(int, int, int, short[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export data in values array.
exportRGBDataNoLock(int, int, int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data in values array WITHOUT using locking.
exportRGBDataNoLock(int, int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export data in values array WITHOUT using locking.
exportSelectedVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
exportSliceXY(int, byte[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export XY slice into values array.
exportSliceXY(int, double[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export XY slice into values array.
exportSliceXY(int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export XY slice into values array.
exportSliceXY(int, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export XY slice into values array.
exportSliceXY(int, long[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: export XY slice into values array.
exportSliceXY(int, short[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Export XY slice into values array.
exportToClipboard(JComponent, Clipboard, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
exportToMask() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: export to Mask.
exportToVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: export to VOI.
exportTransformedImage() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: returns the transformed image
exportTransformField() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: returns the transform field v defined as X' = X+v (=s)
exportVoiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: button VOI export.
exposureArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
exposureBias - Variable in class gov.nih.mipav.model.file.FileSVS
exposureBias - Variable in class gov.nih.mipav.model.file.FileTiff
exposureMode - Variable in class gov.nih.mipav.model.file.FileSVS
exposureMode - Variable in class gov.nih.mipav.model.file.FileTiff
exposureProgram - Variable in class gov.nih.mipav.model.file.FileSVS
exposureProgram - Variable in class gov.nih.mipav.model.file.FileTiff
exposureTime - Variable in class gov.nih.mipav.model.file.FileInfoBase
exposureTime - Variable in class gov.nih.mipav.model.file.FileInfoCZI
exposureTime - Variable in class gov.nih.mipav.model.file.FileSVS
exposureTime - Variable in class gov.nih.mipav.model.file.FileTiff
exposureTime0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTime1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTime2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTime3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTimeBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
exposureTimeChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTimeChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTimeChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTimeChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
exposureTimeTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
exProspCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 408 (internal use) number of Prosp/Scout Series.
exProspData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 416.
exProspLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 412 (internal use) Prosp/Scout Sers Keys in Exam.
expsma(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
expx2(double, int) - Method in class gov.nih.mipav.model.algorithms.Cephes
EXPX2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
exSeriesCt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 364 (innternl use) Last Series Number Used.
exSeriesData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 380.
exSeriesLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 376 (internal use) Series keys for this exam.
exStat - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 436 Patient status.
exSysID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 318 - 9 bytes Creator suite and host.
ext - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
EXT_DELIM - Static variable in class gov.nih.mipav.model.file.FileTypeInfo: The string delimiter which should be used for extension lists passed into or generated by this class.
ext_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
ext_gz - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ext_wilk(double, double, int, int, double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
EXTENDED_POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.LsqFit
EXTENDED_POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
EXTENDED_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.LsqFit
EXTENDED_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
extendedBoundaryTracing() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: From text description in 4th edition Image Processing, Analysis, and Machine Vision International Edition by Milan Sonka, Vaclav Hlavac, and Roger Boyle, Algorithm 6.8 Extended Boundary Tracing, pp. 195-196.
extendedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
ExtendedState - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
ExtendedWilkinson() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
extendName(String, VOI, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Changes voi name used for statistics retrieval based on processing mode
extendOffset - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: Entry n is (-1 << n) + 1; used to make a number negative.
extendTest - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: Entry n is 2**(n-1); used to test whether we need to make a number negative.
extension - Variable in class gov.nih.mipav.model.file.FilePaintBitmap
extension - Variable in class gov.nih.mipav.model.file.FileVOI
extension - Variable in class gov.nih.mipav.model.structures.VOI: extension of voi file name of voi was read in through file
extension - Variable in enum gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType
extensionList - Variable in class gov.nih.mipav.model.file.FileTypeInfo
EXTENSIONS - Static variable in class gov.nih.mipav.model.file.FileAnalyze: The extensions of ANALYZE file.
EXTENSIONS - Static variable in class gov.nih.mipav.model.file.FileSiemensText: The extensions of SiemensText file.
EXTENSIONS - Static variable in class gov.nih.mipav.model.file.FileVista: The extensions of VISTA file.
extent - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
extentDest - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Internal sorting variables for sorting slices on images of greater than 3 dimensions
extentField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
ExtentionMath() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ExtentionMath
extents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
extents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
extents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
extents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
extents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.model.file.FileDicom: The currently known extents of the image, as indicated by the header
extents - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Should be 16384.
extents - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image extents as decribed by the image file format.
extents - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Should be 16384.
extents - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.model.file.FileInfoVista
extents - Variable in class gov.nih.mipav.model.file.FileMetaImage
extents - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.model.GaussianKernelFactory
extents - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: The dimensionality of the dataset.
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Original dimensions extents value array.
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Image extents.
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The extents of original image
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
extents - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: The extents of original image
extents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
extents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Extents of image.
extents - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Extents of image A, same as xDim, yDim, etc.
extents - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Original dimensions extents value array.
extents - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
extents - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Extents of image.
extents - Variable in class gov.nih.mipav.view.VOIGroupNode
EXTENTS - Static variable in class gov.nih.mipav.model.file.FileAnalyze: The extent size of the ANALYZE file.
extents2D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
extents3D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
extents4D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
extentScale - Variable in class gov.nih.mipav.model.GaussianKernelFactory
extentsCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
extentsf - Variable in class gov.nih.mipav.model.file.FileMATLAB
extentsLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
extentsLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
extentSrc - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Internal sorting variables for sorting slices on images of greater than 3 dimensions
extentsSlice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
extentsSlice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
extentsv - Variable in class gov.nih.mipav.model.file.FileMATLAB
extentX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: image extents.
extentY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: image extents.
extentZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: image extents.
exterAccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
exteriorCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
exteriorevalinv(SchwarzChristoffelMapping.scmap, double[][], double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
exteriorFill - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
extermap(double[][], double[], double, double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
EXTERNAL_CAMERA_PHOTOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality external camera photography.
EXTERNAL_CAMERA_PHOTOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality external camera photography.
externalData - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
externalNodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
externalShutter1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
externRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate
externRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Screen
exterplot(SchwarzChristoffelMapping.scmap, double[], double[], int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
exterRoutine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
extModifierMask - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
exToArchCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 396 (internal use) number of Unarchived Series.
exToArchiveData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 404.
exToArchiveLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 400 (internal use) Unarchived series Keys in Exam.
extra_info_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
EXTRA_SAMPLES - Static variable in class gov.nih.mipav.model.file.FileSVS
EXTRA_SAMPLES - Static variable in class gov.nih.mipav.model.file.FileTiff
extraBrainPaddingField - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Text field corresponding to brain padding parameter.
extraBrainPaddingField - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Text field corresponding to brain padding parameter.
extract - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: List of slices to remove from source image.
extract - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
extract(byte[], MetadataExtractor.Metadata, MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader
extract(byte[], MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDnlReader
extract(byte[], MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegReader
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader: Reads TIFF formatted Exif data from start of the specified MetadataExtractor.RandomAccessReader.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifReader: Performs the Jfif data extraction, adding found values to the specified instance of MetadataExtractor.Metadata.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxReader: Performs the JFXX data extraction, adding found values to the specified instance of MetadataExtractor.Metadata.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.MetadataReader: Extracts metadata from reader and merges it into the specified MetadataExtractor.Metadata object.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader: Reads TIFF formatted Exif data a specified offset within a MetadataExtractor.RandomAccessReader.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata, int, MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader: Reads TIFF formatted Exif data at a specified offset within a MetadataExtractor.RandomAccessReader.
extract(MetadataExtractor.RandomAccessReader, MetadataExtractor.Metadata, MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
extract(MetadataExtractor.SequentialReader, int, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
extract(MetadataExtractor.SequentialReader, int, MetadataExtractor.Metadata, MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DuckyReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDhtReader: Performs the DHT tables extraction, adding found tables to the specified instance of MetadataExtractor.Metadata.
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdReader
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata, long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader: Performs the IPTC data extraction, adding found values to the specified instance of MetadataExtractor.Metadata.
extract(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata, long, MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader: Performs the IPTC data extraction, adding found values to the specified instance of MetadataExtractor.Metadata.
extract(MetadataExtractor.SequentialReader, Set<MetadataExtractor.PngChunkType>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkReader
extract_descrip(SIFT3D.SIFT3DC, SIFT3D.Image, SIFT3D.Keypoint, SIFT3D.SIFT3D_Descriptor) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
extract3DSubsets() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: method that extracts 3D subsets from the 4D dataset
extractAIF() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
extractBrain() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The segmentation function.
extractBrain() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Isolate the brain from the rest of the MR image.
extractBrain() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Performs the BET brain extraction using parameters specified from JDialogFaceAnonymizer.
extractBrainAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Reference to the algorithm we will be running.
extractBrainAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Algorithm used for brain extraction.
extractButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Extract the selected image button.
extractButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
extractButtonA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Extract arbitrary cliping plane button.
extractButtonS - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Extract static eye cliping plane button.
extractCEFeature() - Method in class gov.nih.mipav.view.ViewJFrameImage
extractColor(String) - Static method in class gov.nih.mipav.view.MipavUtil: Makes a series of ints, corresponding to a color string stored in the Mipav.preferences file which looks like a color string defined in web pages ("RRGGBB"). and returns a java.awt.Color based on those values.
extractColor(String) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Makes a series of ints, corresponding to a color string stored in the Mipav.preferences file which looks like a color string defined in web pages ("RRGGBB"). and returns a java.awt.Color based on those values.
extractColor(String) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Makes a series of ints, corresponding to a color string stored in the Mipav.preferences file which looks like a color string defined in web pages ("RRGGBB"). and returns a java.awt.Color based on those values.
extractConnected - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Smooth button.
extractConnectedComponents(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Decimate the selected surfaces.
extractContents(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
extractDicomTags(FileInfoBase) - Static method in class gov.nih.mipav.model.file.FileMinc: Extracts any Dicom tags from a given FileInfoBase (if the file info is dicom) and puts them into a Hashtable.
extractedImages - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: DOCUMENT ME!
extractedImages - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
extractExtents(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Inserts the values given by the preference file into the extents fields of the dialog.
extractFace(BitSet, BitSet, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Performs the face de-identification within the bounding area by approximating the given shape using a geometry suitable for the given shape.
extractFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Extract CE features.
extractGroupAndSize(String, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
extractImage24bits(int, int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
extractImage24bits(int, int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
extractImage8bitsTest(int, int, int, int, AlgorithmLearnFromFailure64.ClassType, float, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
extractImage8bitsTest(int, int, int, int, AlgorithmLearnFromFailure64Knees.ClassType, float, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
extractImage8bitsTrain(int, int, int, int, AlgorithmLearnFromFailure64.ClassType) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
extractImage8bitsTrain(int, int, int, int, AlgorithmLearnFromFailure64Knees.ClassType) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
extractImages() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Extract the camera capture frame into the resulting ModelImage model.
ExtractionIntensityLevel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
extractJPEGImage() - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Extracts the JPEG image by processing the byte image array.
extractKey(int, String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
ExtractKeys() - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
extractList - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: List of slices to extract from source image.
extractList - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: DOCUMENT ME!
extractLossyJPEGImage(byte[]) - Method in class gov.nih.mipav.model.file.FileDicom: Brute force removal of 1st fragment of JPEG encoded image.
extractMeshFromVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Extract a TriMesh surface from the Volume Rendering.
extractMultiJPEGImage() - Method in class gov.nih.mipav.model.file.FileDicomJPEG
extractNewMesh(LinkedList) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Used in cutting closed paths and creating new meshes to export to the scene graph.
extractNewMesh(LinkedList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Used in cutting closed paths and creating new meshes to export to the scene graph.
extractNumber(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
extractObject() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The segmentation function.
extractObjectAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
extractPaint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: If true, do not phyically segment the image but generate a paint mask.
extractPaint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: This flag is set when the algorithm is being used only to extract paint from the brain.
extractPaint - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Whether to extract the brain to paint instead of removing image data.
extractPaintCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Checkbox to extract the brain to paint instead of removing image data.
ExtractPath(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Extracts one path from a shape into a new shape.
extractPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Extract the partial or full transformation vector from the start transformation vector, which will be optimized.
extractPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Extract the partial or full transformation vector from the start transformation vector, which will be optimized.
extractPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Extract the partial or full transformation vector from the start transformation vector, which will be optimized.
extractPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Extract the partial or full transformation vector from the start transformation vector, which will be optimized.
extractPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Extract the partial or full transformation vector from the start transformation vector, which will be optimized.
extractResolutions(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Inserts the values given by the preference file into the resolutions fields of the dialog.
extractSelection - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Extrace menu icon item.
extractSelection - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
extractSignificantDigits(boolean, int[]) - Method in class gov.nih.mipav.util.DoubleDouble: Extracts the significant digits in the decimal representation of the argument.
extractSlices() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Calculates the final output and stores it in the source image.
extractSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: DOCUMENT ME!
extractSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
extractSubSets(String[]) - Static method in class gov.nih.mipav.model.file.FilenameSorter: This method will take a String array parameter and break it into a Vector of Vectors.
extractSubVolume(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
extractSurAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
extractSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Extracts a surface, in the form of triangles, from an image.
extractSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Extracts a surface, in the form of triangles, from an image.
extractTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
extractTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
extractTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
extractTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
extractToPaint - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: When true, mask of extracted brain is painted over the source image.
extractToPaintCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: When checked, mask of extracted brain is painted over the source image.
extractUnitIndeces(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Inserts the values given by the preference file into the units of measure fields of the dialog.
extractValue(int, String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
extractY(libdt.Mat[], Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt
extraMMsToPad - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: FaceAnonymizer parameter.
extraMMsToPad - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: FaceAnonymizer parameter.
extraSamples - Variable in class gov.nih.mipav.model.file.FileSVS
extraSamples - Variable in class gov.nih.mipav.model.file.FileTiff
EXTRATREES - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
extremityCoil - Variable in class gov.nih.mipav.model.file.FileGESigna4X
extremityCoil - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
extXInput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Original X, Y, Z dimension extents values.
extXInput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Original X, Y, Z dimension extents values.
extXOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Power of 2 X, Y, Z dimension extents values.
extXOutput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Power of 2 X, Y, Z dimension extents values.
extYInput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Original X, Y, Z dimension extents values.
extYInput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Original X, Y, Z dimension extents values.
extYOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Power of 2 X, Y, Z dimension extents values.
extYOutput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Power of 2 X, Y, Z dimension extents values.
extZInput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Original X, Y, Z dimension extents values.
extZInput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Original X, Y, Z dimension extents values.
extZOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Power of 2 X, Y, Z dimension extents values.
extZOutput - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Power of 2 X, Y, Z dimension extents values.
exUniq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 4 (internal use) The Make_Unique Flag.
exUnSeriesData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 392.
exUnSeriesLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 388 (internal use) Unstored Sers Keys in Exam.
exVersCre - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 352 - 2 bytes Genesis Version - Created.
exVersCur - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 354 - 2 bytes Genesis Version - Now.
exWave - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
Eye() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Converts the matrix in the identity matrix - i.e. zeros all-over except the ones in the diagonal.
eyeTrackerRecordingMode - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
eyetrackingOutStream - Static variable in class gov.nih.mipav.view.MipavUtil: eye tracking outstream writer .

F

f - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
f - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Gauss_filter
f - Variable in class gov.nih.mipav.model.file.FileJP2
f - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4_t
f - Variable in class gov.nih.mipav.model.file.FileMATLAB
f - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
f(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ODE
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
f(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
f(double, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
f(DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.ODEEP
f_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
f_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
f_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
f_inv - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
f_method - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
f_opt - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
f_touched(LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM
f_val - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
f1 - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
f1 - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
f1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
f1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
f1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
f1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
f1 - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
f1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
f1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
f1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
f1(double[], int) - Method in class gov.nih.mipav.model.algorithms.curfit
f10_DEGREES - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
f2 - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
f2 - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
f2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
f2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
f2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
f2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
f2 - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
f2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
f2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
f2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
f3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
f4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
f5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
F5(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly
f6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
f7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
FA - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality Fluorescein Angiography.
FA - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality Fluorescein Angiography.
fa_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fac(int) - Method in class gov.nih.mipav.model.algorithms.Cephes
FAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
face - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: when true, compute face segmentation instead of skull
face - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
face - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
face - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
face() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
Face - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Face() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Face
Face() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
Face(int, int, int, int, String, MetadataExtractor.Age) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Face
face_id(LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
FaceAdjacentToEdges(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceArray - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
faceBorderFromNone(TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags
FaceCorners(int, int[], int[], int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceEdgeIterator(LSCM.Face) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
FaceEdgesFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
FaceEdgesFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction
FaceHalfedgeIterator(LSCM.Face) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
FaceIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceIndex(int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceIndex(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
FaceIndex(OctNode, int, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
faceMostCcwHalfEdge(LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
faceMostClwHalfEdge(LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
faceNeighbor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
faceNeighbor(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
faceNextCcwHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
faceNextClwHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
faceOrientation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: The orientation of an image.
faceOrientation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Face Orientation is left:
faceOrientation - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates face orientation of the image.
faceOrientation - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates face orientation of the image.
FaceOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
FaceReflectCornerIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceReflectEdgeIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FaceReflectFaceIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
faces() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
FacesAdjacentToEdge(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FACET_BASED_PEAK_NOISE_REMOVAL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
FACET_BASED_PEAK_NOISE_REMOVAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Use serialVersionUID for interoperability.
facetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
facetBasedPeakNoiseRemoval() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
FaceTmark - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
FaceTmark() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark
FaceTrait() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.FaceTrait
FaceVertexIterator(LSCM.Face) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
FACING_DOWN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the axial image is facing down.
FACING_DOWN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates axial image with y-axis oriented posterior to anterior.
FACING_DOWN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates axial image with y-axis oriented posterior to anterior.
FACING_INTO_SCREEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the coronal image is facing into the screen.
FACING_INTO_SCREEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates coronal image with z-axis oriented posterior to anterior.
FACING_INTO_SCREEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates coronal image with z-axis oriented posterior to anterior.
FACING_LEFT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the sagittal image is facing left.
FACING_LEFT - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates sagittal image with x-axis oriented anterior to posterior.
FACING_LEFT - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates sagittal image with x-axis oriented anterior to posterior.
FACING_OUT_OF_SCREEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the coronal image is facing out of the screen.
FACING_OUT_OF_SCREEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates coronal image with z-axis oriented anterior to posterior.
FACING_OUT_OF_SCREEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates coronal image with z-axis oriented anterior to posterior.
FACING_RIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the sagittal image is facing right.
FACING_RIGHT - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates sagittal image with x-axis oriented posterior to anterior.
FACING_RIGHT - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates sagittal image with x-axis oriented posterior to anterior.
FACING_UNKNOWN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Face orientation not obtained from file information.
FACING_UNKNOWN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Face orientation not obtained from file information.
FACING_UP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: For indicating the axial image is facing up.
FACING_UP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Indicates axial with y-axis oriented anterior to posterior.
FACING_UP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Indicates axial with y-axis oriented anterior to posterior.
facingDownRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing down image.
facingDownRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing down image.
facingIntoRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing into the screen image.
facingIntoRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing into the screen image.
facingLeftRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing left image.
facingLeftRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing left image.
facingOutRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing out image.
facingOutRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing out image.
facingRightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing right image.
facingRightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing right image.
facingUpRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for facing up image.
facingUpRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Button for facing up image.
Fact - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
FACT - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
fact_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.fact_t
factbl - Static variable in class gov.nih.mipav.model.algorithms.Cephes
factor - Variable in class gov.nih.mipav.model.algorithms.Lmmin: initial bound to steps in the outer loop factor is a positive input variable used in determining the initial step bound.
factor - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: number of division by 2 of the out image compared to the original size of image
factor(int, int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
Factor - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Factor() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Factor(double, double, double[][], double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Factor(double, double, double, double[][], double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Factor(double, double, double, double, double[][], double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Factor(double, double, double, double, double, double[][], double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
FactorCornerIndex(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
FactorCornerIndex(int, int[], int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FACTORED - gov.nih.mipav.model.structures.jama.SuperLU.fact_t
FactorEdgeIndex(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
FactorEdgeIndex(int, int[], int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FactorFaceIndex(int, int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
FactorFaceIndex(int, int[], int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
factorial(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
factorial(int) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets: Returns the factorial of a nonnegative integer.
factorial(int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
factorial(int) - Static method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Returns the factorial of a nonnegative integer.
factorial(int) - Method in class gov.nih.mipav.util.DoubleDouble
FACTR - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
failed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
FailingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.FailingCostFunction
FAILURE - gov.nih.mipav.model.algorithms.CeresSolver.TerminationType
failures - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution
FAImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
FAImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
FakeIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.FakeIterationCallback
FALSE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
falseNegative - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: where trueImage has the nonzero level.
falseNegative - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: where trueImage has id but test image does not.
falsePositive - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: where trueImage does not have the nonzero level.
falsePositive - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: where trueImage does not have id but test image does.
family_name - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
family_number - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
FAMS_ALPHA - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_BLOCKSIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_BLOCKSIZE2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
fams_cut() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut
FAMS_DO_SPEEDUP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_DO_SPEEDUP - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
FAMS_FKL_NEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_FKL_TIMES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_FLOAT_SHIFT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
fams_hash_entry() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry
fams_hash_entry2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry2
FAMS_MAX_K - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_MAX_L - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_MAXITER - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_PRUNE_HDIV - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_PRUNE_MAXM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_PRUNE_MAXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_PRUNE_MINN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
FAMS_PRUNE_WINDOW - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
fams_res_cont(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
famsPoint() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint
fanlyz() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
fast_approx - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
fast_calc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
fast_expn_init() - Method in class gov.nih.mipav.model.algorithms.SIFT
FAST_GLOBAL_K_MEANS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
FAST_GLOBAL_K_MEANS - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
fastAlgorithm - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
fastButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
fastButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
FastConvWaveletMult(double[][], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
Fastfit - Class in gov.nih.mipav.model.algorithms
Fastfit() - Constructor for class gov.nih.mipav.model.algorithms.Fastfit
fastfmmresample(double[][], double[], double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fastGlobalAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
fastgradsparseNNLS(Matrix, Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
fastGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
fastMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Whether to skip searching of the parameter space when registering the original image against the flipped image.
fastMode - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fastMode - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
fastMode - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fastMode - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
fastMode - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fastMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
fastModeCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
fastModeCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fastModeCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
fastModeCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fastplog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
FATAL - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
fatalError - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
fatalError(SAXParseException) - Method in class gov.nih.mipav.model.file.XMLErrorHandler: Handles parse exception fatal errors by passing the parse exception up as a SAXException.
fatalError(SAXParseException) - Method in class gov.nih.mipav.view.dialogs.XMLErrorHandler: Handles parse exception fatal errors by passing the parse exception up as a SAXException.
fatalError(SAXParseException) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.XMLErrorHandler: Handles parse exception fatal errors by passing the parse exception up as a SAXException.
fatalProblem - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
fatCEDImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatCEDImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatCEDImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatCEDImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatCEDImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatCEDImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
fatImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
fatImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
fatImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: target image variables.
fatImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: target image variables.
fatImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: target image variables.
fatImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: target image variables.
fatImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: target image variables.
fatImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
fatImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
fatImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
fatImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
fatImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
fatImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
fatImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
fatImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
fatshiftBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
fatShiftLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
fax - Variable in class gov.nih.mipav.model.file.FileInfoCZI
fax34Decompresser(byte[], byte[]) - Method in class gov.nih.mipav.model.file.FileSVS
fax34Decompresser(byte[], byte[]) - Method in class gov.nih.mipav.model.file.FileTiff
fax34Init() - Method in class gov.nih.mipav.model.file.FileSVS
fax34Init() - Method in class gov.nih.mipav.model.file.FileTiff
fax3Compression - Variable in class gov.nih.mipav.model.file.FileSVS
fax3Compression - Variable in class gov.nih.mipav.model.file.FileTiff
fax4Compression - Variable in class gov.nih.mipav.model.file.FileSVS
fax4Compression - Variable in class gov.nih.mipav.model.file.FileTiff
fb - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The number of fractional bits in the source data
fb - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
fB(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
fb_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fbig_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fbRun(double[][][][], double[][][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
fbRun(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
fbsp(double[], double[], double[], int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FBSP - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
fbsp_order - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
fbtAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
fBTestMode(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
FC_CUSTOM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
fc_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
FC_ELLIPSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
FC_ELLIPSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
FC_HORIZ_LINE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
FC_HORIZ_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
FC_LINE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
FC_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
FC_SQUARE_BOX - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
FC_SQUARE_BOX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
FC_VERT_LINE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
FC_VERT_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
fcmAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
fcmAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
fcmAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
fcomp(int, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
fConvergenceLimit - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: One iteration is defined such that all control points are moved once by gradient descent.
fcsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
FCT(double[], double[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
FCT2D(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
fCURVE_CUTOFF - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
fd - Static variable in class gov.nih.mipav.model.algorithms.Cephes
FD - gov.nih.mipav.model.file.FileDicomTagInfo.VR
fd_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
FD4 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
FD8 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fda_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fData - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
fdb_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fDISTANCE_SCALE_FACTOR - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
fDivACheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
fDivAImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
fDivAImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
fDivDCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
fDivDImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
fDivDImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
FDJAC1(int, int, double[], double[], double[][], int, int[], int, int, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
fdtr(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
FDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fdtrc(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
FDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fdtri(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
FDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
feature - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
feature - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
feature - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
Feature - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
Feature(int, int, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Feature
Feature(String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Feature: Creates a new Feature object.
feature_max - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
feature_max - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
feature_min - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
feature_min - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
FEATURE0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
FEATURE1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
FEATURE2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
featureAdd(FeatureNode[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
featureAdd(svm_node[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
featureArray - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
featureArraySVM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
featureDirName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
featureDirName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
featureDirName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
featureImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: DOCUMENT ME!
FeatureNode - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
FeatureNode(int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode
features - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
Features - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
Features() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
features_container - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
FeaturesSVM - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
FeaturesSVM() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
featuresTrainingPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
feeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
feffAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
feq - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
feq - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
feq - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
feq - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
FERR - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
ffail - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
FFi(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face: Return the index that the face have in the j-th adjacent face.
FFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face: Return the pointer to the j-th adjacent face.
FFp1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
FFp2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
ffR - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
fft() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
fft() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
fft(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: This is the method that calculates the FFT.
fft(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Computes the fft of the input image, returns the fft.
FFT - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
FFT - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
fft_dif(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: void fft_dif(double z[], int n) Purpose: Computes the forward discrete Fourier transform of a complex sequence z, using a radix 2 decimation-in-frequency FFT.
fft_dif_iter(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: static void fft_dif_iter(double *z, unsigned long n) Purpose: Computes the forward discrete Fourier transform of a complex sequence z, using an iterative radix 2 decimation-in-frequency FFT.
fft_dif_rec(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: static void fft_dif_rec(double z[], int n, int nbranch) Purpose: Computes the forward discrete Fourier transform of a complex sequence z, using a radix 2 decimation-in-frequency FFT.
FFT1D(CLFFTPlan.CLFFTKernelDir) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
FFTAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: Float precision default, openCL enabled FFT algorithm
FFTAlgo2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: Double precision, openCL enabled FFT algroithm
fftconv2(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
FFTer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: the AlgorithmFrequencyFilter, to lo-pass filter the image.
fftPadding(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.fftPadding
fftshift(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
fftshift(double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
fftshift(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fftshift(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fftshift(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
fftshift1d(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
FFTUtility - Class in gov.nih.mipav.model.algorithms.filters: This FFT should only be used when it is necessary to perform a N-dimensional FFT on non-power of two data without adding padding.
FFTUtility(double[], double[], int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.FFTUtility: Creates a new FFTUtility object.
FFTUtility(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.FFTUtility: This constructor should only be used for functionType == SELF_TEST.
FFTUtilityEP - Class in gov.nih.mipav.model.algorithms.filters: This extended precision FFT should only be used when it is necessary to perform a N-dimensional FFT on non-power of two data without adding padding.
FFTUtilityEP(double[], double[], int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: Creates a new FFTUtility object.
FFTUtilityEP(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: This constructor should only be used for functionType == SELF_TEST.
FGMqpnonneg(Vector<Double>, Matrix, Matrix, Matrix, int, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
fGradientDescentMinimizeStepSize - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Size of step in sample units when locating the minimum of the gradient descent.
fGroupNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
fhat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
fhatmx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
FHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
fHist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fHistPaddedI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fHistPaddedR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fht_dif(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2: void fht_dif(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using a radix 2 decimation-in-frequency FHT.
fht_dif_iter(double[], int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dif_iter(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using an iterative radix 2 decimation-in-frequency FHT.
fht_dif_iter_seq(double[], int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dif_iter_seq(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using an iterative radix 2 decimation-in-frequency FHT.
fht_dif_rec(double[], int, int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dif_rec(double *x, unsigned long n, int nbranch) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using a radix 2 decimation-in-frequency FHT.
fht_dit(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2: void fht_dit(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using a radix 2 decimation-in-time FHT.
fht_dit_iter(double[], int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dit_iter(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using an iterative radix 2 decimation-in-time FHT.
fht_dit_iter_seq(double[], int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dit_iter_seq(double *x, unsigned long n) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using an iterative radix 2 decimation-in-time FHT.
fht_dit_rec(double[], int, int) - Static method in class gov.nih.mipav.model.algorithms.HartleyTransform2: static void fht_dit_rec(double *x, unsigned long n, int nbranch) Purpose: Computes the discrete Hartley transform of a real sequence x[0..n-1], using a radix 2 decimation-in-time FHT.
fht_instance_count - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
fht_revbin_counts - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
fht_revbin_tables - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
fht_trig_tables - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
FHT_UNIT_STRIDE - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
fht2D(int, int, double[][], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
fhtdya(double[], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fhtdya2D(int, int, double[][], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fhtnat(double[], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fhtnat2D(int, int, double[][], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fhtseq(double[], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fhtseq2D(int, int, double[][], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fi - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT_REC
fi - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT
FIBER - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Fiber track files
FIBER_TRACKING - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
fiberTrack - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
field - Variable in class gov.nih.mipav.view.dialogs.JDialogNColors: DOCUMENT ME!
field - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: Text field to enter name in.
field - Variable in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Text field to enter increment.
field - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Text field to enter increment.
field_floor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Lowest allowable field value.
field_skip - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown length.
field_skip - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown length.
field_skip - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
fieldBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fieldDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Characteristic distance over which the field varies.
fieldDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
fieldDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
fieldImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fieldImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
fieldImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
fieldImage - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
fieldNames - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
fieldNames - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
fieldOfView - Variable in class gov.nih.mipav.model.file.FileGESigna4X
fieldOfView - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
fields - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
fieldSeparator - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
fieldSeparator - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
fieldStrength - Variable in class gov.nih.mipav.model.file.FileGESigna4X
fieldStrength - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
FieldStrength(String) - Constructor for enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength
fieldStrengthGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
FieldType - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
FilamentArc(String, Float, Boolean) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.FilamentArc: Creates a new FilamentArc object.
filarc - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource
file - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta: < Current file name
file - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileDataProvenance: File reference.
file - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMap: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileNIFTI: File object and input streams needed for NIFTI compressed files
file - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FilePaintBitmap: File reference, it and its components are able to be modified by extending classes.
file - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileSVS: The file...
file - Variable in class gov.nih.mipav.model.file.FileTiff: The file...
file - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
file - Variable in class gov.nih.mipav.model.file.FileVOI: File reference, it and its components are able to be modified by extending classes.
file - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
file - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
file - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
file - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
FILE_CHARSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
FILE_ERROR - gov.nih.mipav.model.algorithms.SIFT3D.im_format
FILE_EXT_TABLE - Static variable in class gov.nih.mipav.model.file.FileTypeTable
FILE_RAW_DATA_TYPE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating the data type of the raw image.
FILE_RAW_ENDIANESS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating whether the raw image is big endian.
FILE_RAW_EXTENTS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating the extents of the raw image.
FILE_RAW_OFFSET - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating the file offset.
FILE_RAW_RESOLUTIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating the resolutions of the raw image.
FILE_RAW_UNITS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Label of the parameter indicating the units of measure of the raw image.
FILE_READ - Static variable in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
FILE_STRING - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
file_suffix - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
file_suffix - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
file_suffix - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
file_suffix - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
FILE_TYPE_TABLE - Static variable in class gov.nih.mipav.model.file.FileTypeTable
FILE_WRITE - Static variable in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
FileAfni - Class in gov.nih.mipav.model.file: Afni file format.
FileAfni(String, String, boolean, boolean) - Constructor for class gov.nih.mipav.model.file.FileAfni: Afni reader constructor.
FileAnalyze - Class in gov.nih.mipav.model.file: The class reads and writes Analyze Version 7.5.x files.
FileAnalyze(String[]) - Constructor for class gov.nih.mipav.model.file.FileAnalyze: Creates a new FileAnalyze object.
FileAnalyze(String, String) - Constructor for class gov.nih.mipav.model.file.FileAnalyze: Constructs new file object.
FileAvi - Class in gov.nih.mipav.model.file: AVI file writer and reader.
FileAvi(String, String) - Constructor for class gov.nih.mipav.model.file.FileAvi: Avi reader/writer constructor.
FileBase - Class in gov.nih.mipav.model.file: FileBase is an abstract class that has many methods that support the reading/writing of files.
FileBase() - Constructor for class gov.nih.mipav.model.file.FileBase: Empty constructor.
FileBase(String[]) - Constructor for class gov.nih.mipav.model.file.FileBase: Creates a new FileBase object.
FileBFLOAT - Class in gov.nih.mipav.model.file
FileBFLOAT(String, String) - Constructor for class gov.nih.mipav.model.file.FileBFLOAT: Interfile reader/writer constructor.
FileBioRad - Class in gov.nih.mipav.model.file: Reads BioRaD pic file format.
FileBioRad(String, String) - Constructor for class gov.nih.mipav.model.file.FileBioRad: reader/writer constructor.
fileBlocks - Variable in class gov.nih.mipav.model.file.FileGESigna4X
fileBlocks - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
FileBMP - Class in gov.nih.mipav.model.file
FileBMP(String, String) - Constructor for class gov.nih.mipav.model.file.FileBMP: BMP reader/writer constructor.
fileBrowse - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
FileBRUKER - Class in gov.nih.mipav.model.file: Reads a BRUKER file by first reading in the d3proc header file or if the d3proc header file is not\ present the visu_pars file, second the reco header file, third the acqp file in the same directory or up one or two two parent directories, then the method file,l and finally the 2dseq binary file.
FileBRUKER(String, String) - Constructor for class gov.nih.mipav.model.file.FileBRUKER: BRUKER reader/writer constructor.
fileButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
fileButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
filebvalGradTxtName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: bValGrad test file name from user
fileBytes - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
FileCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.FileCellRenderer
FileCheshire - Class in gov.nih.mipav.model.file: The class reads Cheshire file images.
FileCheshire(String, String, boolean) - Constructor for class gov.nih.mipav.model.file.FileCheshire: Creates a new FileCheshire object.
FileCheshireVOI - Class in gov.nih.mipav.model.file: Addresses and lengths are always contained in 4 bytes.
FileCheshireVOI(String, String, ModelImage) - Constructor for class gov.nih.mipav.model.file.FileCheshireVOI: FileCheshireVOI - VOI reader/writer constructor.
fileChooser - Variable in class gov.nih.mipav.view.FileSelectorImpl
fileClip - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
fileCoordinatesToPatient(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
fileCoordinatesToPatient(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Converts the input position from file coordinates to the local patient coordinates.
FileCoordinatesToVOI(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
FileCOR - Class in gov.nih.mipav.model.file: FreeSurfer COR files are used to store 3 dimensional unsigned byte data.
FileCOR(String, String) - Constructor for class gov.nih.mipav.model.file.FileCOR: COR reader/writer constructor.
FileCZI - Class in gov.nih.mipav.model.file: File written using Zeiss Release Version 1.1 for ZEN 2012
FileCZI(String, String) - Constructor for class gov.nih.mipav.model.file.FileCZI: LIFF reader/writer constructor.
FileDataProvenance - Class in gov.nih.mipav.model.file
FileDataProvenance(String, String, ProvenanceHolder) - Constructor for class gov.nih.mipav.model.file.FileDataProvenance: VOI reader/writer constructor.
FileDataProvenance.ProvenanceXMLHandler - Class in gov.nih.mipav.model.file: Handle events generated while parsing the XML file.
fileDataType - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
fileDate - Variable in class gov.nih.mipav.model.file.FileInfoZVI
FileDeleter - Class in gov.nih.mipav.model.file: Class to safely delete a file using a looped thread.
FileDeleter(String) - Constructor for class gov.nih.mipav.model.file.FileDeleter: Construct the file deleter.
FileDicom - Class in gov.nih.mipav.model.file: This class reads and writes DICOM files.
FileDicom(String) - Constructor for class gov.nih.mipav.model.file.FileDicom: DICOM reader/writer constructor.
FileDicom(String, String) - Constructor for class gov.nih.mipav.model.file.FileDicom: DICOM reader/writer constructor.
FileDicomBase - Class in gov.nih.mipav.model.file: FileDICOMBase is an class that supports the reading/writing of DICOM files.
FileDicomBase() - Constructor for class gov.nih.mipav.model.file.FileDicomBase: Empty constructor.
FileDicomJPEG - Class in gov.nih.mipav.model.file: Class that reads a lossless compressed JPEG file.
FileDicomJPEG(byte[], int, int) - Constructor for class gov.nih.mipav.model.file.FileDicomJPEG: Assigns image buffer and creates the other arrays needed to read in image.
FileDicomJPEG(Vector<byte[]>, Vector<int[]>, int, int) - Constructor for class gov.nih.mipav.model.file.FileDicomJPEG: Assigns image buffer and creates the other arrays needed to read in image.
FileDicomJPEG.HuffTable - Class in gov.nih.mipav.model.file: This class reads and packs the bits appropriately for interpreting the huffman codes.
FileDicomKey - Class in gov.nih.mipav.model.file: FileDicomKey goes along with FileDicomTag - it is the key into the hashtable that corresponds to a tag.
FileDicomKey(int, int) - Constructor for class gov.nih.mipav.model.file.FileDicomKey: Creates a Key from the given group and element numbers provided.
FileDicomKey(String) - Constructor for class gov.nih.mipav.model.file.FileDicomKey: Creates new key with the given String as the unique identifier.
FileDicomSQ - Class in gov.nih.mipav.model.file: This is a class for reading in a DICOM sequence tag.
FileDicomSQ() - Constructor for class gov.nih.mipav.model.file.FileDicomSQ: Creates a new DicomSQ object with initial length.
FileDicomSQItem - Class in gov.nih.mipav.model.file: A table containing dicom tags.
FileDicomSQItem(FileInfoDicom, FileDicomTagTable, FileInfoDicom.VRtype) - Constructor for class gov.nih.mipav.model.file.FileDicomSQItem
FileDicomSQItem(FileInfoDicom, FileInfoDicom.VRtype) - Constructor for class gov.nih.mipav.model.file.FileDicomSQItem
FileDicomTag - Class in gov.nih.mipav.model.file: This class holds all the important information about each DICOM tag.
FileDicomTag(FileDicomTagInfo) - Constructor for class gov.nih.mipav.model.file.FileDicomTag: Constructor that creates a DicomTag empty except for the group and element fields.
FileDicomTag(FileDicomTagInfo, Object) - Constructor for class gov.nih.mipav.model.file.FileDicomTag: Constructor that creates a DicomTag empty except for the name field. this is used for private tags and the name field is the supposed value of the tag.
FileDicomTagInfo - Class in gov.nih.mipav.model.file: Information about a DICOM tag, stored in the DicomDictionary table once for each DICOM tag.
FileDicomTagInfo(int, int, FileDicomTagInfo.VR, int, String, String) - Constructor for class gov.nih.mipav.model.file.FileDicomTagInfo: Constructor that takes all the information needed about the tag except for the value and DICOM revision number.
FileDicomTagInfo(int, int, String, FileDicomTagInfo.VR, int, String, String) - Constructor for class gov.nih.mipav.model.file.FileDicomTagInfo: Constructor that takes all the information needed about the tag except for the value.
FileDicomTagInfo(FileDicomKey, FileDicomTagInfo.VR, int, String, String) - Constructor for class gov.nih.mipav.model.file.FileDicomTagInfo: Constructor that takes all the information needed about the tag except for the value and DICOM revision number (which we assume to be 3).
FileDicomTagInfo(FileDicomKey, String, FileDicomTagInfo.VR, int, String, String) - Constructor for class gov.nih.mipav.model.file.FileDicomTagInfo: Constructor that takes all the information needed about the tag except for the value and DICOM revision number.
FileDicomTagInfo.NumType - Enum in gov.nih.mipav.model.file
FileDicomTagInfo.StringType - Enum in gov.nih.mipav.model.file
FileDicomTagInfo.VR - Enum in gov.nih.mipav.model.file
FileDicomTagTable - Class in gov.nih.mipav.model.file: A table containing dicom tags.
FileDicomTagTable(FileInfoDicom, FileDicomTagTable, FileInfoDicom.VRtype) - Constructor for class gov.nih.mipav.model.file.FileDicomTagTable: Creates a new FileDicomTagTable object.
FileDicomTagTable(FileInfoDicom, FileInfoDicom.VRtype) - Constructor for class gov.nih.mipav.model.file.FileDicomTagTable: Creates a new FileDicomTagTable object.
fileDigitNumber - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
fileDir - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.algorithms.RectangularConformalMap
fileDir - Variable in class gov.nih.mipav.model.algorithms.SIFT
fileDir - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
fileDir - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
fileDir - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileAnalyze: File directory of the image.
fileDir - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileCheshire: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileDicom: Directory of the image file.
fileDir - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The file directory containing the data files.
fileDir - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileIO: Directory where the image file can be found.
fileDir - Variable in class gov.nih.mipav.model.file.FileJP2: File directory.
fileDir - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileMinc: The directory containing the minc file being written out or read in.
fileDir - Variable in class gov.nih.mipav.model.file.FileMincHDF: The directory containing the minc file being written out or read in.
fileDir - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileOME: The directory where the xml header and raw image data file are located.
fileDir - Variable in class gov.nih.mipav.model.file.FilePaintBitmap: File directory where the VOI is to read or written.
fileDir - Variable in class gov.nih.mipav.model.file.FilePARREC: File directory of the image.
fileDir - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML: File directory where the VOI is to read or written.
fileDir - Variable in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileSiemensText: File directory of the image.
fileDir - Variable in class gov.nih.mipav.model.file.FileSpar: File directory of the image.
fileDir - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileSVS: File directory.
fileDir - Variable in class gov.nih.mipav.model.file.FileTiff: File directory.
fileDir - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.model.file.FileVista: file name and file dir
fileDir - Variable in class gov.nih.mipav.model.file.FileVOI: File directory where the VOI is to read or written.
fileDir - Variable in class gov.nih.mipav.model.file.FileXML: Directory of XML file on disk.
fileDir - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
fileDir - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
fileDirectory - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
FileDM3 - Class in gov.nih.mipav.model.file: Some of this code is derived from DM3_Reader.java in ImageJ.
FileDM3(String, String) - Constructor for class gov.nih.mipav.model.file.FileDM3: DM3 reader constructor.
fileDone - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
fileDone - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: DOCUMENT ME!
fileDone - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: DOCUMENT ME!
FileExists(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Tests if a file exists.
fileExtensionsTS - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This is the alphabetically sorted collection of supported file extension names
FileFiberTrack - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
FileFiberTrack() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack
fileField - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: JTextField for the name of the file being attached
fileFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
FileFilterExt - Class in gov.nih.mipav.view.renderer.flythroughview: A simple file filter to select only files with the specified extensions for display in a JFileChooser instance.
FileFilterExt(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Create file filter given no initial extensions.
FileFilterExt(String[], String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Create file filter given the initial array of extensions.
FileFilterExt(String, String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Create file filter given the initial single extension.
FileFits - Class in gov.nih.mipav.model.file: Some of this code is derived from FITS.java in ImageJ.
FileFits(String, String) - Constructor for class gov.nih.mipav.model.file.FileFits: FITS reader/writer constructor.
fileFormat - Variable in class gov.nih.mipav.model.file.FileGESigna4X
fileFormat - Variable in class gov.nih.mipav.model.file.FileInfoBase: File format as defined in the Filebase.
fileFormat - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
fileFormat - Variable in class gov.nih.mipav.model.file.FileMincHDF: will always use the HDF5 fileformat
FileGESigna4X - Class in gov.nih.mipav.model.file: Fixed format header Image data is not compressed Image data fixed offset 14336 bytes Data General host The image files are of fixed layout, described here as a series of 256 by 16 bit word blocks (512 bytes), blocks numbered from 0.
FileGESigna4X(String, String) - Constructor for class gov.nih.mipav.model.file.FileGESigna4X: reader/writer constructor.
FileGESigna5X - Class in gov.nih.mipav.model.file: Reads both GE Neducak Systems MR 5X and LX.
FileGESigna5X(String, String) - Constructor for class gov.nih.mipav.model.file.FileGESigna5X: reader/writer constructor.
fileHeader - Variable in class gov.nih.mipav.model.file.FileAnalyze: Reference to the header file (*.hdr).
fileHeader - Variable in class gov.nih.mipav.model.file.FileDicom: File object of the image.
fileHeader - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
fileHeader - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
fileHeader - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
fileHeader - Variable in class gov.nih.mipav.model.file.FileMetaImage
fileHeader - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
fileHeader - Variable in class gov.nih.mipav.model.file.FileSiemensText: Reference to the header file (*.hdr).
FileHistoLUT - Class in gov.nih.mipav.model.file: HistoLUT reader/writer.
FileHistoLUT(String, String) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: LUT reader/writer constructor.
FileHistoLUT(String, String, ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: LUT reader/writer constructor.
FileHistoLUT(String, String, ModelImage, ModelRGB) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: RGB reader/writer constructor.
FileHistoLUT(String, String, ModelImage, ModelStorageBase) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: LUT reader/writer constructor.
FileHistoLUT(String, String, ModelLUT) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: LUT reader/writer constructor.
FileHistoLUT(String, String, ModelRGB) - Constructor for class gov.nih.mipav.model.file.FileHistoLUT: RGB reader/writer constructor.
FileICS - Class in gov.nih.mipav.model.file: Reference: 1.
FileICS(String, String) - Constructor for class gov.nih.mipav.model.file.FileICS: ICS reader constructor.
fileID - Variable in class gov.nih.mipav.model.file.FileBioRad: always set to 12345 in BioRad pic files.
fileID - Variable in class gov.nih.mipav.model.file.FileInfoZVI
FileImageXML - Class in gov.nih.mipav.model.file: File class for reading/writing Image.XML file headers and their associated images.
FileImageXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileImageXML: Constructs new file object.
FileImageXML.LUValue - Class in gov.nih.mipav.model.file: Stores LUT information (red, green, blue, alpha).
FileImageXML.MyXMLHandler - Class in gov.nih.mipav.model.file: Used by the XML Parser to parse the xml header.
FileImageXML.Thumbnail - Class in gov.nih.mipav.model.file: Holds an AWT Image and an int[] array of data for an XML Thumbnail image the thumbnail is stored in the XML's header so that it may be read in independently from the actual image data. when an XML file is saved, the user has the option to also saved a reduced resolution (max 64x64) image into the XML's header using standard XML tagging
fileinfo - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
fileinfo - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: file info xml to be displayed.
fileInfo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileAnalyze: Reference to the file info. for an Analyze header
fileInfo - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileCheshire: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileDicom: Meta data structure in which to save all the DICOM tags.
fileInfo - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileJP2: File Info.
fileInfo - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMap: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileMinc
fileInfo - Variable in class gov.nih.mipav.model.file.FileMincHDF
fileInfo - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileOME: The info for the image file.
fileInfo - Variable in class gov.nih.mipav.model.file.FilePARREC: Reference to the file info. for an Analyze header
fileInfo - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileSiemensText: Reference to the file info. for an SiemensText header
fileInfo - Variable in class gov.nih.mipav.model.file.FileSpar: Reference fileinfo
fileInfo - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileSVS: File Info.
fileInfo - Variable in class gov.nih.mipav.model.file.FileTiff: File Info.
fileInfo - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.file.FileTrackVis: Fileinfo for image
fileInfo - Variable in class gov.nih.mipav.model.file.FileVista: FileInfo Vista
fileInfo - Variable in class gov.nih.mipav.model.file.FileXML: the file info storing xml specific information, abstract base class of FileInfoImageXML or FileInfoSurfaceXML:
fileInfo - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Each image slice has a information that describes aspects of each slice of an image.
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Variables for holding and storing file information.
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: DOCUMENT ME!
fileInfo - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: fileInfo data structure for reading the surface information into:.
fileInfo - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: fileInfo data structure for reading the surface information into:.
fileInfo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: fileInfo data structure for reading the surface information into:.
fileInfo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: fileInfo data structure for reading the surface information into:.
fileInfo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
fileInfo2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
fileInfo2 - Variable in class gov.nih.mipav.model.file.FileMATLAB
FileInfoAfni - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an Afni image is stored on disk.
FileInfoAfni(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoAfni: File info storage constructor.
FileInfoAnalyze - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an analyze image is stored on disk.
FileInfoAnalyze(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoAnalyze: File info storage constructor.
fileInfoArray - Variable in class gov.nih.mipav.model.file.FilePARREC
FileInfoAvi - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an Avi image is stored on disk.
FileInfoAvi(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoAvi: File info storage constructor.
FileInfoBase - Class in gov.nih.mipav.model.file: This structure contains the basic information that describes how the image is stored on disk.
FileInfoBase(FileInfoBase) - Constructor for class gov.nih.mipav.model.file.FileInfoBase: Internal constructor for clone usage.
FileInfoBase(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoBase: fileInfo constructor.
FileInfoBase.AxisOrientation - Enum in gov.nih.mipav.model.file
FileInfoBase.ImageOrientation - Enum in gov.nih.mipav.model.file
FileInfoBase.Modality - Enum in gov.nih.mipav.model.file
FileInfoBase.Unit - Enum in gov.nih.mipav.model.file
FileInfoBase.Unit.UnsupportedUnitConversion - Exception in gov.nih.mipav.model.file
FileInfoBase.UnitType - Enum in gov.nih.mipav.model.file: Each unit has a unit type with a given base.
FileInfoBFLOAT - Class in gov.nih.mipav.model.file
FileInfoBFLOAT(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoBFLOAT: FileInfoInterfile - file info storage constructor.
FileInfoBioRad - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a Biorad image is stored on disk.
FileInfoBioRad(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoBioRad: FileInfoBioRad File info storage constructor.
FileInfoBMP - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoBMP(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoBMP: File info storage constructor.
FileInfoBRUKER - Class in gov.nih.mipav.model.file: File information related to the Bruker/Biospin scanner format.
FileInfoBRUKER(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoBRUKER: File info storage constructor.
fileInfoBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
FileInfoCheshire - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an analyze image is stored on disk.
FileInfoCheshire(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoCheshire: File info storage constructor.
fileInfoCom - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileAfni
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileBFLOAT
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileBioRad
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileBRUKER
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileCheshire
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileDM3
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileFits
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileICS
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileInterfile
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileJSON
fileInfoCopy - Variable in class gov.nih.mipav.model.file.FileMRC
FileInfoCOR - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoCOR(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoCOR: File info storage constructor.
FileInfoCZI - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoCZI(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoCZI: File info storage constructor.
fileInfoDicom - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes
FileInfoDicom - Class in gov.nih.mipav.model.file: This class contains DICOM header information.
FileInfoDicom(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoDicom: DICOM file information constructor.
FileInfoDicom(String, String, int, FileInfoDicom) - Constructor for class gov.nih.mipav.model.file.FileInfoDicom: DICOM file information constructor.
FileInfoDicom.LengthStorageUnit - Class in gov.nih.mipav.model.file: This class is a basic storage unit for a primitive integer variable.
FileInfoDicom.VRtype - Enum in gov.nih.mipav.model.file
FileInfoDM3 - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a DM3 image is stored on disk.
FileInfoDM3(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoDM3: File info storage constructor.
FileInfoFits - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a Fits image is stored on disk.
FileInfoFits(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoFits: File info storage constructor.
FileInfoGESigna4X - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a GE Signa 5X image is stored on disk.
FileInfoGESigna4X(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoGESigna4X: File info storage constructor.
FileInfoGESigna5X - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a GE Signa 5X image is stored on disk.
FileInfoGESigna5X(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoGESigna5X: File info storage constructor.
FileInfoICS - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an ICS image is stored on disk.
FileInfoICS(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoICS: File info storage constructor.
fileInfoImageXML - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
FileInfoImageXML - Class in gov.nih.mipav.model.file: This structure contains the information that describes how an XML image is stored on disk.
FileInfoImageXML(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoImageXML: Main constructor for FileInfoXML.
FileInfoImageXML.Investigator - Class in gov.nih.mipav.model.file: Title: Investigator
FileInfoImageXML.SurfaceLink - Class in gov.nih.mipav.model.file: Title: SurfaceLink
FileInfoImageXML.VOILink - Class in gov.nih.mipav.model.file: Title: VOILink
FileInfoInterfile - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an Interfile image is stored on disk.
FileInfoInterfile(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoInterfile: FileInfoInterfile - file info storage constructor.
FileInfoJP2 - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a JP2 compressed image of 3D medical image is stored on disk.
FileInfoJP2(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoJP2: File info storage constructor.
FileInfoJSON - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a Fits image is stored on disk.
FileInfoJSON(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoJSON: File info storage constructor.
FileInfoLattice - Class in gov.nih.mipav.model.file: This structure contains the information that describes how a Lattice image is stored on disk.
FileInfoLattice(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoLattice: File info storage constructor.
FileInfoLIFF - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoLIFF(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoLIFF: File info storage constructor.
FileInfoLSM - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a LSM image is stored on disk.
FileInfoLSM(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoLSM: FileInfoLSM - file info storage constructor.
FileInfoMagnetomVision - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a Siemens MagnetomVision image is stored on disk.
FileInfoMagnetomVision(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMagnetomVision: FileInfoMagnetomVision - file info storage constructor.
FileInfoMATLAB - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoMATLAB(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMATLAB: File info storage constructor.
FileInfoMedVision - Class in gov.nih.mipav.model.file: This structure contains the information that describes how an MedVision image is stored on disk, as well as header information.
FileInfoMedVision(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMedVision: FileInfoMedVision.
FileInfoMetaImage - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a MetaImage image is stored on disk.
FileInfoMetaImage(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMetaImage: File info storage constructor.
FileInfoMGH - Class in gov.nih.mipav.model.file
FileInfoMGH(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMGH: file info storage constructor.
FileInfoMicroCat - Class in gov.nih.mipav.model.file: This structures contains the information that describes how.
FileInfoMicroCat(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMicroCat: File info storage constructor.
FileInfoMinc - Class in gov.nih.mipav.model.file: This class holds all the file information for a MINC file.
FileInfoMinc(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMinc: MINC file information constructor.
FileInfoMincHDF - Class in gov.nih.mipav.model.file
FileInfoMincHDF(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMincHDF: MINC file information constructor.
FileInfoMRC - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a MRC image is stored on disk.
FileInfoMRC(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoMRC: FileInfoMRC - file info storage constructor.
fileInfoNIFTI - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
fileInfoNIFTI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
FileInfoNIFTI - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a NIFTI image is stored on disk.
FileInfoNIFTI(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoNIFTI: file info storage constructor.
FileInfoNRRD - Class in gov.nih.mipav.model.file
FileInfoNRRD(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoNRRD: file info storage constructor.
FileInfoOME - Class in gov.nih.mipav.model.file: Title:
FileInfoOME(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoOME: Creates a new FileInfoOME object.
FileInfoOME.ExperimenterRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.ExperimentRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Dataset - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Experiment - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Experimenter - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Group - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.GroupRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.ChannelInfo - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.ChannelInfo.ChannelComponent - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.ChannelInfo.LightSourceRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.Data - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.Data.BinExternal - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.DisplayOptions - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.DisplayOptions.ROI - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.Feature - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.InstrumentRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.PlateInfo - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Image.StageLabel - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Include - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.Detector - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.Filter - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.Filter.FilterType - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.LightSource - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.LightSource.FilamentArc - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.LightSource.Laser - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.LightSource.Laser.Pump - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.Microscope - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.Objective - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.OTF - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Instrument.OTF.BinExternal - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Plate - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Plate.ScreenRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Project - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.OME.Screen - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.Person - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileInfoOME.ProjectRef - Class in gov.nih.mipav.model.file: DOCUMENT ME!
fileInfoPARREC - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
FileInfoPARREC - Class in gov.nih.mipav.model.file: Created by IntelliJ IDEA.
FileInfoPARREC(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoPARREC
FileInfoPGM - Class in gov.nih.mipav.model.file
FileInfoPGM(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoPGM: FileInfoPGM.
FileInfoPPM - Class in gov.nih.mipav.model.file
FileInfoPPM(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoPPM: FileInfoPPM.
fileInfoPR - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: file info Par/Rec
FileInfoRaw - Class in gov.nih.mipav.model.file: This structure contains the information that describes how a RAW image is stored on disk.
FileInfoRaw(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoRaw: FileInfoRaw.
FileInfoSiemensText - Class in gov.nih.mipav.model.file
FileInfoSiemensText(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSiemensText: File info storage constructor.
FileInfoSPAR - Class in gov.nih.mipav.model.file
FileInfoSPAR(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSPAR
FileInfoSPM - Class in gov.nih.mipav.model.file: This structures contains the information that describes how an SPM image is stored on disk.
FileInfoSPM(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSPM: file info storage constructor.
FileInfoSTK - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a STK image is stored on disk.
FileInfoSTK(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSTK: File info storage constructor.
fileInfoSub - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
FileInfoSurfaceGiftiXML_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceGiftiXML_WM(String, String, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Main constructor for FileInfoSurfaceXML.
FileInfoSurfaceRefXML - Class in gov.nih.mipav.model.file: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceRefXML(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Main constructor for FileInfoSurfaceXML.
FileInfoSurfaceRefXML_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceRefXML_J3D(String, String, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D: Main constructor for FileInfoSurfaceXML.
FileInfoSurfaceRefXML_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceRefXML_WM(String, String, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM: Main constructor for FileInfoSurfaceXML.
FileInfoSurfaceXML - Class in gov.nih.mipav.model.file: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceXML(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSurfaceXML: Main constructor for FileInfoSurfaceXML.
FileInfoSurfaceXML_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.
FileInfoSurfaceXML_J3D(String, String, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D: Main constructor for FileInfoSurfaceXML.
FileInfoSVS - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a SVS image is stored on disk.
FileInfoSVS(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoSVS: File info storage constructor.
FileInfoTiff - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a Tiff image is stored on disk.
FileInfoTiff(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoTiff: File info storage constructor.
FileInfoTMG - Class in gov.nih.mipav.model.file: This structures contains the information that describes how a TMG image is stored on disk.
FileInfoTMG(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoTMG: FileInfoTMG - file info storage constructor.
FileInfoTrackVis - Class in gov.nih.mipav.model.file
FileInfoTrackVis(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoTrackVis: File info storage constructor.
fileInfoVector - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: fileInfoVector represents images in image table but imageTableVector was needed also becasue this handles multiple series in the same dir. fileInfoVector is all the images in the dir but imageTableVector represents all the images that are in the image table at a particular instance or series
FileInfoVista - Class in gov.nih.mipav.model.file: File Info Vista
FileInfoVista(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoVista: constructor
FileInfoXML - Class in gov.nih.mipav.model.file: Abstract base clase contains the information that contains the shared information for XML images and XML surfaces.
FileInfoXML(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoXML: Main constructor for FileInfoXML.
FileInfoZVI - Class in gov.nih.mipav.model.file: File info storage container.
FileInfoZVI(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileInfoZVI: File info storage constructor.
FileInterfile - Class in gov.nih.mipav.model.file
FileInterfile(String, String) - Constructor for class gov.nih.mipav.model.file.FileInterfile: Interfile reader/writer constructor.
fileInterp - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
fileIO - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: file IO
fileIO - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fileIO - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: DOCUMENT ME!
FileIO - Class in gov.nih.mipav.model.file: This class controls the file input/output of most formats that MIPAV supports, including tiff, raw, analyze, DICOM, and Medvision.
FileIO() - Constructor for class gov.nih.mipav.model.file.FileIO: Creates the FileIO and displays Choose File Type unknown file dialog.
FileIO(ModelLUT) - Constructor for class gov.nih.mipav.model.file.FileIO: Creates the FileIO and displays Choose File Type unknown file dialog.
FileIO.LinkedComparator - Class in gov.nih.mipav.model.file
FileIO.LinkedNum - Class in gov.nih.mipav.model.file
FileIO.OrientStatus - Class in gov.nih.mipav.model.file: Orientation information held by orientation.
FileJP2 - Class in gov.nih.mipav.model.file: Jpeg2K reader/ writer for 3D images.
FileJP2() - Constructor for class gov.nih.mipav.model.file.FileJP2: Tiff reader/writer constructor.
FileJP2(String, String, ViewJProgressBar) - Constructor for class gov.nih.mipav.model.file.FileJP2: Tiff reader/writer constructor.
FileJPEG2000 - Class in gov.nih.mipav.model.file
FileJPEG2000() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000
FileJPEG2000(String, String, String, String, int, int, String, boolean, int, int, int, int, int, int, int, int, int, int, int, boolean, boolean, boolean, boolean, boolean, int, int, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.file.FileJPEG2000
FileJPEG2000.dircnt_t - Class in gov.nih.mipav.model.file
FileJPEG2000.img_fol_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_bio_t - Class in gov.nih.mipav.model.file: Individual bit input-output stream (BIO)
FileJPEG2000.opj_codec_private_t - Class in gov.nih.mipav.model.file: Main codec handler used for compression or decompression.
FileJPEG2000.opj_codestream_index_t - Class in gov.nih.mipav.model.file: Index structure of the codestream (FIXME should be expand and enhance)
FileJPEG2000.opj_cp_t - Class in gov.nih.mipav.model.file: Coding parameters
FileJPEG2000.opj_dec_memory_marker_handler_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_decoding_param_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_decompress_parameters - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_dparameters_t - Class in gov.nih.mipav.model.file: Decompression parameters
FileJPEG2000.opj_dwt_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_encoding_param_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_image_cmptparm_t - Class in gov.nih.mipav.model.file: Component parameters structure used by the opj_image_create function
FileJPEG2000.opj_image_comp_t - Class in gov.nih.mipav.model.file: Defines a single image component
FileJPEG2000.opj_image_t - Class in gov.nih.mipav.model.file: Defines image data and characteristics
FileJPEG2000.opj_j2k_dec_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_j2k_t - Class in gov.nih.mipav.model.file: JPEG-2000 codestream reader/writer
FileJPEG2000.opj_marker_info_t - Class in gov.nih.mipav.model.file: Marker structure
FileJPEG2000.opj_mct_data_t - Class in gov.nih.mipav.model.file: FIXME DOC
FileJPEG2000.opj_mqc_state_t - Class in gov.nih.mipav.model.file: This struct defines the state of a context.
FileJPEG2000.opj_mqc_t - Class in gov.nih.mipav.model.file: MQ coder
FileJPEG2000.opj_packet_info_t - Class in gov.nih.mipav.model.file: Index structure : Information concerning a packet inside tile
FileJPEG2000.opj_pi_comp_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_pi_iterator_t - Class in gov.nih.mipav.model.file: Packet iterator
FileJPEG2000.opj_pi_resolution_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_poc_t - Class in gov.nih.mipav.model.file: Progression order changes
FileJPEG2000.opj_ppx - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_precision - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_procedure_list_t - Class in gov.nih.mipav.model.file: A list of procedures.
FileJPEG2000.opj_raw_t - Class in gov.nih.mipav.model.file: RAW encoding operations
FileJPEG2000.opj_simple_mcc_decorrelation_data_t - Class in gov.nih.mipav.model.file: FIXME DOC
FileJPEG2000.opj_stepsize_t - Class in gov.nih.mipav.model.file: Quantization stepsize
FileJPEG2000.opj_t1_t - Class in gov.nih.mipav.model.file: Tier-1 coding (coding of code-block coefficients)
FileJPEG2000.opj_t2_t - Class in gov.nih.mipav.model.file: Tier-2 coding
FileJPEG2000.opj_tccp_info_t - Class in gov.nih.mipav.model.file: Tile-component coding parameters information
FileJPEG2000.opj_tccp_t - Class in gov.nih.mipav.model.file: Tile-component coding parameters
FileJPEG2000.opj_tcd_band_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_cblk_dec_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_image_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_precinct_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_resolution_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_seg_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_t - Class in gov.nih.mipav.model.file: Tile coder/decoder
FileJPEG2000.opj_tcd_tile_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcd_tilecomp_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_tcp_t - Class in gov.nih.mipav.model.file: Tile coding parameters : this structure is used to store coding/decoding parameters common to all tiles (information like COD, COC in main header)
FileJPEG2000.opj_tgt_node_t - Class in gov.nih.mipav.model.file: Tag node
FileJPEG2000.opj_tgt_tree_t - Class in gov.nih.mipav.model.file: Tag tree
FileJPEG2000.opj_tile_index_t - Class in gov.nih.mipav.model.file: Index structure about a tile
FileJPEG2000.opj_tile_info_v2_t - Class in gov.nih.mipav.model.file: Tile coding parameters information
FileJPEG2000.opj_tp_index_t - Class in gov.nih.mipav.model.file: Index structure about a tile part
FileJPEG2000.opj_v4_t - Class in gov.nih.mipav.model.file
FileJPEG2000.opj_v4dwt_t - Class in gov.nih.mipav.model.file
FileJSON - Class in gov.nih.mipav.model.file
FileJSON(String, String) - Constructor for class gov.nih.mipav.model.file.FileJSON: JSON reader/writer constructor.
fileLength - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
fileLength - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
fileLength - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
fileLength - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
fileLength - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
fileLength - Variable in class gov.nih.mipav.model.file.FileSVS
fileLength - Variable in class gov.nih.mipav.model.file.FileTiff
FileLIFF - Class in gov.nih.mipav.model.file
FileLIFF(String, String) - Constructor for class gov.nih.mipav.model.file.FileLIFF: LIFF reader/writer constructor.
fileLink - Variable in class gov.nih.mipav.model.file.FileInfoZVI
fileListData - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
fileLocation - Variable in class gov.nih.mipav.view.dialogs.ScriptImage
FileLSM - Class in gov.nih.mipav.model.file: Reads Zeiss LSM 510 image files - an extension of the TIFF format.
FileLSM(String, String, int) - Constructor for class gov.nih.mipav.model.file.FileLSM: LSM reader/writer constructor.
FileLSM.Index - Class in gov.nih.mipav.model.file: Simple class to store image offsets and bytes located at the offset.
FileMagnetomVision - Class in gov.nih.mipav.model.file: Class that reads Siemens Magnetom Vision files.
FileMagnetomVision(String, String) - Constructor for class gov.nih.mipav.model.file.FileMagnetomVision: Magnetom Vision reader/writer constructor.
FileMap - Class in gov.nih.mipav.model.file: Special for Benes.
FileMap(String, String, FileInfoBase, int) - Constructor for class gov.nih.mipav.model.file.FileMap: Creates a new FileMap object.
FileMATLAB - Class in gov.nih.mipav.model.file
FileMATLAB(String, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: LIFF reader/writer constructor.
FileMATLAB(String, String) - Constructor for class gov.nih.mipav.model.file.FileMATLAB: LIFF reader/writer constructor.
fileMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
fileMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
FileMedVision - Class in gov.nih.mipav.model.file: The class reads MedVision files that have been saved as MAC bin files.
FileMedVision(String, String) - Constructor for class gov.nih.mipav.model.file.FileMedVision: FileMedVision - MedVision reader/writer constructor.
fileMenu - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
fileMenu - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
fileMenu - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
fileMenu - Variable in class gov.nih.mipav.view.ViewMenuBuilder: Link to the file menu so that quicklist can be rebuilt and added.
FileMetaImage - Class in gov.nih.mipav.model.file
FileMetaImage(String, String) - Constructor for class gov.nih.mipav.model.file.FileMetaImage: Constructs new file object.
FileMGH - Class in gov.nih.mipav.model.file: The class reads MGH files.
FileMGH(String, String) - Constructor for class gov.nih.mipav.model.file.FileMGH: Constructs new file object.
FileMicroCat - Class in gov.nih.mipav.model.file
FileMicroCat(String, String) - Constructor for class gov.nih.mipav.model.file.FileMicroCat: MicroCat reader/writer constructor.
FileMinc - Class in gov.nih.mipav.model.file: The MINC file format is built on top of NetCDF.
FileMinc(String, String) - Constructor for class gov.nih.mipav.model.file.FileMinc: MINC reader/writer constructor.
FileMincAttElem - Class in gov.nih.mipav.model.file: This class represents a MINC atrribute element.
FileMincAttElem(String, int, int) - Constructor for class gov.nih.mipav.model.file.FileMincAttElem: Constructor that creates the attribute element and initializes the array to the type of the parameter and the length of the parameter.
FileMincDimElem - Class in gov.nih.mipav.model.file: This class represents a MINC dimension element.
FileMincDimElem(String, int) - Constructor for class gov.nih.mipav.model.file.FileMincDimElem: Constructor that creates a MINC dimension element with the given name and length.
FileMincHDF - Class in gov.nih.mipav.model.file: HDF5 based reader/writer for MINC 2.0 Currently, for the image max and image min nodes: in the case of 3d images in which 1 image min and 1 image max is to be written out per slice, the dimorder is hardcoded to zspace.
FileMincHDF(String, String) - Constructor for class gov.nih.mipav.model.file.FileMincHDF: MINC reader/writer constructor.
FileMincHDF.HDFNode - Class in gov.nih.mipav.model.file
FileMincVarElem - Class in gov.nih.mipav.model.file: This class represents a MINC variable element.
FileMincVarElem(String, int, int[]) - Constructor for class gov.nih.mipav.model.file.FileMincVarElem: Constructor for the MINC variable element.
fileMiscPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
FileMRC - Class in gov.nih.mipav.model.file: Comments from David Mastronarde:
I am not familiar with the latest standards for MRC files, but typically the extra header information has been used to save information about each section in the file.
FileMRC(String, String) - Constructor for class gov.nih.mipav.model.file.FileMRC: MRC reader/writer constructor.
filename - Variable in class gov.nih.mipav.model.file.FileDeleter: DOCUMENT ME!
filename - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: .sur file name.
filename - Variable in class gov.nih.mipav.model.file.FileJPEG2000.dircnt_t
fileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.algorithms.RectangularConformalMap
fileName - Variable in class gov.nih.mipav.model.algorithms.SIFT
fileName - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: File name of the image to be stored.
fileName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileAnalyze: File name of the image.
fileName - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileCheshire: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileDicom: Name of the file to be read in.
fileName - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileInfoBase: The file name which includes the path information.
fileName - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileJP2: File name.
fileName - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileMinc: The name of the minc file to be read in or written out.
fileName - Variable in class gov.nih.mipav.model.file.FileMincHDF: The name of the minc file to be read in or written out.
fileName - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileOME: The name of the xml image header file.
fileName - Variable in class gov.nih.mipav.model.file.FilePaintBitmap: File name of the VOI.
fileName - Variable in class gov.nih.mipav.model.file.FilePARREC: File name of the image.
fileName - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML: File name of the VOI.
fileName - Variable in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileRaw
fileName - Variable in class gov.nih.mipav.model.file.FileSiemensText: File name of the image.
fileName - Variable in class gov.nih.mipav.model.file.FileSpar: File name of the image.
fileName - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileSVS: File name.
fileName - Variable in class gov.nih.mipav.model.file.FileTiff: File name.
fileName - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.model.file.FileVista: file name and file dir
fileName - Variable in class gov.nih.mipav.model.file.FileVOI: File name of the VOI.
fileName - Variable in class gov.nih.mipav.model.file.FileWriteOptions: All file options.
fileName - Variable in class gov.nih.mipav.model.file.FileXML: Name of the XML header file on disk.
fileName - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: String to house the user inputed file name
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: fileName of where dicom tags are save to *
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
fileName - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
fileName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: File name and directory.
fileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: File name and directory.
fileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
fileName - Variable in class gov.nih.mipav.view.ViewFileChooserBase: String locations
fileName - Variable in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: The filename (no path).
fileNameBase - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
fileNameInput - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
fileNameInput - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
fileNameList - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
fileNameMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
fileNameMp - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
fileNameOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
fileNameOutput - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
fileNamePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
fileNamePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
filenames - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
fileNames - Variable in class gov.nih.mipav.model.file.FileBase: The file names which are opened.
fileNames - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
fileNames - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: ArrayList of all file names of report attachments
fileNameSequence - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
fileNameSet - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
FilenameSorter - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FilenameSorter() - Constructor for class gov.nih.mipav.model.file.FilenameSorter
filenameTable - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
fileNameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
fileNameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
fileNameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
filenameTableModel - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
filenameTableSorter - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
fileNameTimes - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileNameTissue - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
fileNameTissue - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileNameVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileNameVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
fileNameVOI2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileNameWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
fileNameWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
fileNameWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
fileNameWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
fileNameWInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fileNameWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
fileNameWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
fileNameWRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
FileNIFTI - Class in gov.nih.mipav.model.file: The class reads and writes NIFTI files.
FileNIFTI(String, String) - Constructor for class gov.nih.mipav.model.file.FileNIFTI: Constructs new file object.
FileNRRD - Class in gov.nih.mipav.model.file
FileNRRD(String, String) - Constructor for class gov.nih.mipav.model.file.FileNRRD: Constructs new file object.
fileNum - Variable in class gov.nih.mipav.model.algorithms.SIFT
fileNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
FileOME - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileOME(String, String, boolean) - Constructor for class gov.nih.mipav.model.file.FileOME: Constructs new file object.
FileOME.MyXMLHandler - Class in gov.nih.mipav.model.file: Private class used by the parser to parse the XML file.
FilePackBit - Class in gov.nih.mipav.model.file: The class reads and writes packed bit files for tiff formatted images (including STK).
FilePackBit(RandomAccessFile) - Constructor for class gov.nih.mipav.model.file.FilePackBit: Packbitconstructor.
filePad - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
FilePaintBitmap - Class in gov.nih.mipav.model.file
FilePaintBitmap(String, String, ModelImage) - Constructor for class gov.nih.mipav.model.file.FilePaintBitmap: VOI reader/writer constructor.
filePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Logical construct to reuild a source tree...
filePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
fileParRec - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: FileParRec handle
FilePARREC - Class in gov.nih.mipav.model.file: The class reads and writes PAR/REC files.
FilePARREC(String[]) - Constructor for class gov.nih.mipav.model.file.FilePARREC: Creates a new FileAnalyze object.
FilePARREC(String, String) - Constructor for class gov.nih.mipav.model.file.FilePARREC: Constructs new file object.
FilePARREC(String, String, FileInfoBase) - Constructor for class gov.nih.mipav.model.file.FilePARREC: Constructor used by FileIO to write an image
FilePARREC(String, String, FileInfoPARREC[], boolean) - Constructor for class gov.nih.mipav.model.file.FilePARREC: Constructor used by FileIO to write an image
filePath - Variable in class gov.nih.mipav.view.dialogs.ScriptTreeNode
filePaths - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: ArrayList of all file paths of report attachments
filePB - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
filePB - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
filePB - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
FilePGM - Class in gov.nih.mipav.model.file
FilePGM(String, String) - Constructor for class gov.nih.mipav.model.file.FilePGM: File Portable Greymap Utilities reader/writer constructor.
filePointer - Variable in class gov.nih.mipav.model.file.FileMATLAB
filePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
filePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
filePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
FilePolyline_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: FilePolyline.
FilePolyline_WM() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM
FilePolylineVOIXML - Class in gov.nih.mipav.model.file
FilePolylineVOIXML(String, String) - Constructor for class gov.nih.mipav.model.file.FilePolylineVOIXML
FilePolylineVOIXML.MyXMLHandler - Class in gov.nih.mipav.model.file: Handle events generated while parsing the XML file.
FilePPM - Class in gov.nih.mipav.model.file
FilePPM(String, String) - Constructor for class gov.nih.mipav.model.file.FilePPM: File Portable Pixmap Utilities reader/writer constructor.
FileRaw - Class in gov.nih.mipav.model.file: The class reads and writes raw files of all data types: boolean, byte, short, int, long, float, and double.
FileRaw(FileInfoBase) - Constructor for class gov.nih.mipav.model.file.FileRaw: Constructor for Raw Files that will be used to write from 4D to 3D or from 3D to 2D.
FileRaw(String, FileInfoBase, int) - Constructor for class gov.nih.mipav.model.file.FileRaw: Raw reader/writer constructor.
FileRaw(String, String, FileInfoBase, int) - Constructor for class gov.nih.mipav.model.file.FileRaw: Raw reader/writer constructor..
FileRawChunk - Class in gov.nih.mipav.model.file: The class reads and writes raw files of all data types: boolean, byte, short, int, long, float, and double.
FileRawChunk(RandomAccessFile, FileInfoBase) - Constructor for class gov.nih.mipav.model.file.FileRawChunk: Raw reader/writer constructor.
FileRawChunk(String, FileInfoBase, int, int) - Constructor for class gov.nih.mipav.model.file.FileRawChunk: Compressed raw reader/writer constructor.
fileRW - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
fileRW - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
fileRW - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
fileRW - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
fileRW - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
files - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
files - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: The class, zip, jar etc files that were selected before they were unzipped
fileSavePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
filesColor - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: The results of working with the files in a temporary class environment
FileSelector - Interface in gov.nih.mipav.view: The FileSelector interface defines the interface for file selector which is used to select files.
FileSelectorImpl - Class in gov.nih.mipav.view: The implementation of the FileSelector interface for the local file system, for the remote file system you should have different implementation, basically this class is a wrapper of the JFileChooser.
FileSelectorImpl() - Constructor for class gov.nih.mipav.view.FileSelectorImpl
fileSelectorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel to select files.
FileSiemensText - Class in gov.nih.mipav.model.file
FileSiemensText(String, String) - Constructor for class gov.nih.mipav.model.file.FileSiemensText: Constructs new file object.
fileSize - Variable in class gov.nih.mipav.model.file.FileInfoZVI
fileSize - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
fileSource - Variable in class gov.nih.mipav.model.file.FileSVS
fileSource - Variable in class gov.nih.mipav.model.file.FileTiff
filesPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
FileSpar - Class in gov.nih.mipav.model.file: Reads a spar/sdat file.
FileSpar(ModelImage, FileInfoBase, String, String) - Constructor for class gov.nih.mipav.model.file.FileSpar
FileSpar(String, String) - Constructor for class gov.nih.mipav.model.file.FileSpar
FileSPM - Class in gov.nih.mipav.model.file: The class reads and writes SPM files.
FileSPM(String, String) - Constructor for class gov.nih.mipav.model.file.FileSPM: Constructs new file object.
fileStartNumber - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
FileSTK - Class in gov.nih.mipav.model.file: The MetaMorph Stack (STK) file format is derived from the TIFF format.
FileSTK(String, String) - Constructor for class gov.nih.mipav.model.file.FileSTK: STK reader/writer constructor.
FileSTK.Index - Class in gov.nih.mipav.model.file: Simple class to store image offsets and bytes located at the offset.
fileSuccess - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
fileSuccess - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie: DOCUMENT ME!
fileSuccess - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: DOCUMENT ME!
fileSuffix - Variable in class gov.nih.mipav.model.file.FileInfoBase: File suffix (ex.
FileSurface_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: FileSurface.
FileSurface_J3D() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D
FileSurface_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: FileSurface.
FileSurface_WM() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM
FileSurfaceGiftiXML - Class in gov.nih.mipav.model.file: Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file.
FileSurfaceGiftiXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileSurfaceGiftiXML: Constructs new file object.
FileSurfaceGiftiXML_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Inherits from FileXML, reads gifti xml files based on the "gifti.xsd" file.
FileSurfaceGiftiXML_WM(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Constructs new file object.
FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Used by the XML Parser to parse the Surface.XML header.
FileSurfaceRefXML - Class in gov.nih.mipav.model.file: Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file.
FileSurfaceRefXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileSurfaceRefXML: Constructs new file object.
FileSurfaceRefXML_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file.
FileSurfaceRefXML_J3D(String, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D: Constructs new file object.
FileSurfaceRefXML_J3D.SurfaceRefXMLHandler - Class in gov.nih.mipav.view.renderer.J3D.model.file: Used by the XML Parser to parse the Surface.XML header.
FileSurfaceRefXML_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file.
FileSurfaceRefXML_WM(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM: Constructs new file object.
FileSurfaceRefXML_WM.SurfaceRefXMLHandler - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Used by the XML Parser to parse the Surface.XML header.
FileSurfaceVTKXML - Class in gov.nih.mipav.model.file: This class facilitates reading and writing vtk xml
FileSurfaceVTKXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileSurfaceVTKXML: constructor
FileSurfaceVTKXML_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: This class facilitates reading and writing vtk xml
FileSurfaceVTKXML_J3D(String, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceVTKXML_J3D: constructor
FileSurfaceVTKXML_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: This class facilitates reading and writing vtk xml
FileSurfaceVTKXML_WM(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceVTKXML_WM: constructor
FileSurfaceXML - Class in gov.nih.mipav.model.file: Inherits from FileXML, reads Surface.XML files based on the "surface.xsd" file.
FileSurfaceXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileSurfaceXML: Constructs new file object.
FileSurfaceXML_J3D - Class in gov.nih.mipav.view.renderer.J3D.model.file: Inherits from FileXML, reads Surface.XML files based on the "surface.xsd" file.
FileSurfaceXML_J3D(String, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D: Constructs new file object.
FileSurfaceXML_J3D.SurfaceXMLHandler - Class in gov.nih.mipav.view.renderer.J3D.model.file: Used by the XML Parser to parse the Surface.XML header.
FileSVS - Class in gov.nih.mipav.model.file: Tagged Image File Format (TIFF 6.0) reader/ writer.
FileSVS(String, String) - Constructor for class gov.nih.mipav.model.file.FileSVS: SVS reader/writer constructor.
FileSVS.BitInputStream - Class in gov.nih.mipav.model.file
FileSVS.BitSwapInputStream - Class in gov.nih.mipav.model.file
FileSVS.BitSwapTable - Interface in gov.nih.mipav.model.file
FileSVS.Index - Class in gov.nih.mipav.model.file: Simple class to store image offsets and bytes located at the offset.
FileSVS.IntFilterInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGACInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGBitInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGComponentInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGConstants - Interface in gov.nih.mipav.model.file
FileSVS.JPEGDCInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGDCTInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGFastDCTInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGHuffmanInputStream - Class in gov.nih.mipav.model.file
FileSVS.JPEGInputStream - Class in gov.nih.mipav.model.file
FileSVS.ModHuffmanInputStream - Class in gov.nih.mipav.model.file
FileSVS.ModHuffmanInputStream.ModHuffmanCodingException - Exception in gov.nih.mipav.model.file
FileSVS.ModHuffmanTable - Interface in gov.nih.mipav.model.file
FileSVS.ModModREADInputStream - Class in gov.nih.mipav.model.file
FileSVS.ModREADInputStream - Class in gov.nih.mipav.model.file
FileSVS.ModREADTable - Interface in gov.nih.mipav.model.file
FileSVS.RLEBitInputStream - Class in gov.nih.mipav.model.file
FileSVS.TIFFYCbCrInputStream - Class in gov.nih.mipav.model.file
FileSVS.Type - Enum in gov.nih.mipav.model.file: Tiff Types.
fileSystem - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: File system view.
FileSystemDescriptor(MetadataExtractor.FileSystemDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDescriptor
FileSystemDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory
FileSystemMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FileSystemMetadataReader
fileTempDirBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
fileTempDirField - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
fileTextField - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
fileTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
fileTFld - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
FileTiff - Class in gov.nih.mipav.model.file: Tagged Image File Format (TIFF 6.0) reader/ writer.
FileTiff(String, String) - Constructor for class gov.nih.mipav.model.file.FileTiff: Tiff reader/writer constructor.
FileTiff.BitInputStream - Class in gov.nih.mipav.model.file
FileTiff.BitSwapInputStream - Class in gov.nih.mipav.model.file
FileTiff.BitSwapTable - Interface in gov.nih.mipav.model.file
FileTiff.Index - Class in gov.nih.mipav.model.file: Simple class to store image offsets and bytes located at the offset.
FileTiff.IntFilterInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGACInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGBitInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGComponentInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGConstants - Interface in gov.nih.mipav.model.file
FileTiff.JPEGDCInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGDCTInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGFastDCTInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGHuffmanInputStream - Class in gov.nih.mipav.model.file
FileTiff.JPEGInputStream - Class in gov.nih.mipav.model.file
FileTiff.ModHuffmanInputStream - Class in gov.nih.mipav.model.file
FileTiff.ModHuffmanInputStream.ModHuffmanCodingException - Exception in gov.nih.mipav.model.file
FileTiff.ModHuffmanTable - Interface in gov.nih.mipav.model.file
FileTiff.ModModREADInputStream - Class in gov.nih.mipav.model.file
FileTiff.ModREADInputStream - Class in gov.nih.mipav.model.file
FileTiff.ModREADTable - Interface in gov.nih.mipav.model.file
FileTiff.RLEBitInputStream - Class in gov.nih.mipav.model.file
FileTiff.TIFFYCbCrInputStream - Class in gov.nih.mipav.model.file
FileTiff.Type - Enum in gov.nih.mipav.model.file: Tiff Types.
fileTimes - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
FileTMG - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileTMG(String, String) - Constructor for class gov.nih.mipav.model.file.FileTMG: TMG reader/writer constructor.
fileToModel(int, ModelStorageBase) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToModel transform.
fileToModel(Vector3f, Vector3f, ModelStorageBase) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToModel transform.
fileToPatient(int, ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToModel transform.
fileToPatient(Vector3f, Vector3f, ModelStorageBase, boolean, int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToPatient transform.
fileToPatient(Vector3f, Vector3f, ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToPatient transform.
fileToPatient(Vector3f, Vector3f, ModelStorageBase, int, boolean) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToPatient transform.
fileToPatient(Vector3f, Vector3f, ModelStorageBase, int, boolean, int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: FileToPatient transform.
fileToScanner(Vector3f, Vector3f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Translates the input point into ScannerCoordinates, based on the input image, kImage.
fileToScreen(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
fileToScreen(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
fileToScreenVOI(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
fileToScreenVOI(Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Converts image file X,Y,Z coordinates into local screen coordinates.
fileToScreenVOI(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
FileTrackVis - Class in gov.nih.mipav.model.file: Reads a .trk track file as a MIPAV mask image.
FileTrackVis(String, String) - Constructor for class gov.nih.mipav.model.file.FileTrackVis
fileTransMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
fileTransMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Stores the matrix read in from a file it then can be converted to the corrected axis orientation (i.e. world coordinate and/or left-hand coordinate systems).
fileTree - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
filetVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
fileType - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
fileType - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: File header data structure format.
fileType - Variable in class gov.nih.mipav.model.file.FileWriteOptions: A FileUtility.Type
fileType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
fileType() - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Returns whether analyze, interfile, or nifti
fileType() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Returns whether Minc1 CDF or Minc2 HDF5 has been selected.
FileType(String, String, String, String...) - Constructor for enum gov.nih.mipav.model.file.MetadataExtractor.FileType
FILETYPE_ACRNEMA_VR_DUMP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: Read/write file types...
FILETYPE_DICOM_CHAPTER_10_EXPLICIT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
FILETYPE_DICOM_CHAPTER_10_IMPLICIT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
fileTypeDescriptions - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
fileTypeExtensions - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
FileTypeInfo - Class in gov.nih.mipav.model.file: This class stores information about a file type, including the type description (i.e., 'NRRD') and allowed extensions (i.e., '.nrrd,.nhdr').
FileTypeInfo(String, String) - Constructor for class gov.nih.mipav.model.file.FileTypeInfo: Create a new FileTypeInfo.
FileTypeInfo(String, String, String...) - Constructor for class gov.nih.mipav.model.file.FileTypeInfo: Create a new FileTypeInfo.
FileTypeInfo(String, Vector<String>) - Constructor for class gov.nih.mipav.model.file.FileTypeInfo: Create a new FileTypeInfo.
fileTypeInts - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
fileTypeList - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: surface file format list.
fileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: surface file formats.
fileTypeStr - Static variable in class gov.nih.mipav.model.file.FileUtility
FileTypeTable - Class in gov.nih.mipav.model.file
FileTypeTable() - Constructor for class gov.nih.mipav.model.file.FileTypeTable
FileTypeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.FileTypeTest
FileUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FileUtil
FileUtility - Class in gov.nih.mipav.model.file: Constants and static methods which relate to file input, output or processing.
FileUtility() - Constructor for class gov.nih.mipav.model.file.FileUtility
FileUtility.nameSliceComparator - Class in gov.nih.mipav.model.file
FileUtility.nameSliceItem - Class in gov.nih.mipav.model.file
fileVersion - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
FileVista - Class in gov.nih.mipav.model.file
FileVista(String, String) - Constructor for class gov.nih.mipav.model.file.FileVista: constructor
fileVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
FileVOI - Class in gov.nih.mipav.model.file: VOI reader/writer.
FileVOI(String, String, ModelImage) - Constructor for class gov.nih.mipav.model.file.FileVOI: VOI reader/writer constructor.
FileVOI.MyXMLHandler - Class in gov.nih.mipav.model.file: Handle events generated while parsing the XML file.
FileVOI.VOIComparator - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileVOI.VOISortItem - Class in gov.nih.mipav.model.file: DOCUMENT ME!
FileVOI.XMLAnnotationHandler - Class in gov.nih.mipav.model.file: Handle events generated while parsing the Annotation XML file.
FileVOI.XMLCoordHandler - Class in gov.nih.mipav.model.file: Handle events generated while parsing the XML file.
fileVOI2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
fileW - Variable in class gov.nih.mipav.model.file.FileAvi
FileWriteOptions - Class in gov.nih.mipav.model.file: This structure contains information to direct file writing.
FileWriteOptions(boolean) - Constructor for class gov.nih.mipav.model.file.FileWriteOptions: Constructs an options structure with the given saveAs value.
FileWriteOptions(String, String, boolean) - Constructor for class gov.nih.mipav.model.file.FileWriteOptions: Constructs an options structure with the given file name, directory, and saveAs values.
FileXML - Class in gov.nih.mipav.model.file: Abstract base class for reading/writing .XML file headers.
FileXML(String, String) - Constructor for class gov.nih.mipav.model.file.FileXML: Constructs new file object.
FileXML.XMLAttributes - Class in gov.nih.mipav.model.file: Class used to store an xml tag's attribute (name and value)
FileZVI - Class in gov.nih.mipav.model.file: Documentation used was the ZVI Format Specification V 2.0.5 - August, 2010.
FileZVI(String, String) - Constructor for class gov.nih.mipav.model.file.FileZVI: ZVI reader constructor.
fill(float[][], int[], int, int, int, ModelImage, BitSet, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function for rendering this contour onto the z-plane.
fill(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Fills the whole image with the specified value.
fill(int[][], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: fill: fill the sculpt outline drawn by the user.
fill(int[][], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: fill: fill the sculpt outline drawn by the user.
fill(int[][], int[], int, int, int, int, int, ModelImage, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: fill: fill the sculpt outline drawn by the user.
fill(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
fill(ModelImage, float, float, Vector<Vector3f>, BitSet, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
fill(ModelImage, Vector3f, Vector<Vector3f>, BitSet, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
fill(BitSet, Vector<Vector3f>, BitSet, Vector3f, Vector3f, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
fill(Vector<Vector3f>, BitSet, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
Fill - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
fill_A(double[], int[], int[], int[], int[], int[], int, int, int, int[][], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
fill_B(double[], int[], int[], int[], int[], int[], int, int, int, int[][], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
FILL_HOLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
fill_input_buffer(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
fill_inverse_cmap8(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
fill_inverse_cmap9to12(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
FILL_NN - gov.nih.mipav.model.algorithms.libdt.fill_type
FILL_NNFILL - gov.nih.mipav.model.algorithms.libdt.fill_type: < use nearest-neighbor.
FILL_ORDER - Static variable in class gov.nih.mipav.model.file.FileSVS
FILL_ORDER - Static variable in class gov.nih.mipav.model.file.FileTiff
fill_type() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.fill_type
FILL_VOTE - gov.nih.mipav.model.algorithms.libdt.fill_type: < use nearest-neighbor (fill in patches).
fill_X(float[][], int[], int, int, int, ModelImage, BitSet, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function for rendering this contour onto the x-plane.
fill_Y(float[][], int[], int, int, int, ModelImage, BitSet, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function for rendering this contour onto the y-plane.
fillAllBackgrounds(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: background filling algorithm.
fillBackground(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: background filling algorithm.
FillBlock(Vector<Integer>, Vector<Integer>, int, int, Vector<CeresSolver2.Triplet<Integer, Integer, Double>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
fillBox(IndexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Generates the triangle -index array connectivity for the default cube, stores the index array in the input IndexBuffer.
fillBox(VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Fills in the values for the default cube.
fillBuffer() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
fillBuffer() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
fillBuffer() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
fillBuffer() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
fillBuffer(FloatBuffer, float[]) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
fillBuffer(FloatBuffer, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
fillBuffer(FloatBuffer, ModelImage, int) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
fillBuffer(IntBuffer, int[]) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
fillButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
fillByteArray(byte[], char) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Fills a byte array with some "char" value.
fillChooser() - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: no information available.
fillDataFromFile() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Asks for a text file of tags, then loads them into the text fields.
fillDataFromTable(Hashtable<String, String>) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Fill the values in the dialog from tag-value pairs in a hashtable.
fillholes(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Fill holes inside the binary mask image.
fillHoles - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Whether to fill in all internal holes in the extracted brain.
fillHoles(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Fill the holes inside the cell region blocks.
fillHoles(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Fill the holes inside the cell region blocks.
fillHoles(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Fill the holes inside the cell region blocks.
fillHolesCB - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Checkbox for indicating whether to close all of the interior holes in the extracted brain.
fillHolesFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Whether to make an effort to fill in any interior holes in the final brain mask.
fillHolesRegion(int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: 2D flood fill that fill the holes insize the cell region block.
fillHolesRegion(int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: 2D flood fill that fill the holes insize the cell region block.
fillHolesRegion(int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: 3D flood fill that fill the holes insize the cell region block.
fillImageBuffer(int, boolean) - Method in class gov.nih.mipav.view.PatientSlice: Gets the image data based on the orientation, either AXIAL, CORONAL, SAGITTAL, UNKNOWN_ORIENT, or a diagonal slice if the plane is a diagonal cut-plane through the ModelImage.
fillImagesVOIs(Vector<Vector<String>>, Vector<Vector<String>>) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Gets the list of images selected by the user in this dialog.
fillImageTable(Vector<String>) - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Populate the image table based on a list of image names we want to use in the execution of the script.
fillModeToPolygonIndex(WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
fillOrder - Variable in class gov.nih.mipav.model.file.FileSVS
fillOrder - Variable in class gov.nih.mipav.model.file.FileTiff
FillPat - Static variable in class gov.nih.mipav.model.file.FileLIFF
FillPixels(float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: In model simple image, fill pixel with given intensity value.
fillRaster(int, int, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
fillRasterMSAA(int, int, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
fillValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: All values outside the thresholds are set to this value.
fillValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Used for out of bounds values in the transformation routines.
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
fillValue - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
fillValues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Arrays containing fill values for each channel (red=0,green=1,blue=2).
fillValues - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
fillValuesA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
fillValuesB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
fillVolume(int, Polyline, ModelImage, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
fillVolume(ModelImage, BitSet, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Renders this contour into the input ModelImage or the input BitSet mask.
fillVolume(BitSet, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Renders this contour into the input mask.
fillWhiteMatter(ModelImage, VOI) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Once the white-matter seed point is found it is used to initialize a flood-fill algorithm that segments the white-matter of the brain.
fillX(int, Vector<Vector3f>, BitSet, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
fillY(int, Vector<Vector3f>, BitSet, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
fillZ(int, Vector<Vector3f>, BitSet, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
filter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
filter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
filter(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
filter(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
filter(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
filter(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
filter(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
filter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: just break up each RGB image into these separate monochrome images sliceFilter and then reassemble int aRGB.
filter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: just break up each RGB image into these separate monochrome images sliceFilter and then reassemble int aRGB.
Filter(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter: constructor.
Filter(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Projects an observation into the PCA space and back.
FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
FILTER - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
FILTER_GREATER - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_GREATER - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_GREATER - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_GREATER - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_GREATER - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_GREATER - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_GREATER - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_GREATER - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_GREATER - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_HARD - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_HARD - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_HARD - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_HARD - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_HARD - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_HARD - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_HARD - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_HARD - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_HARD - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_LESS - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_LESS - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_LESS - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_LESS - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_LESS - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_LESS - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_LESS - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_LESS - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_LESS - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_NN_GARROTE - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_NN_GARROTE - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_NONE - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_NONE - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_NONE - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_NONE - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_NONE - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_NONE - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_NONE - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_NONE - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_NONE - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_SOFT - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_SOFT - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_SOFT - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_SOFT - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_SOFT - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_SOFT - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_SOFT - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_SOFT - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_SOFT - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
FILTER_THRESHOLD_FIRM - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
FILTER_THRESHOLD_FIRM - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
filter2(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
filter2Same(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
filter2Same(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
filter2Same(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
filter2Same(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.NoiseLevel
filter2Same(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
filter2SameWithDownSample(double[][], double[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
filter2SameWithDownSample(double[][], double[][], int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
filter2Valid(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
filter3Same(double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
filterbank_DCA_2D(double[][], double[][], double[], double[], int, String, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
filterButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
filterCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
filteredCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
filteredImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
filteredImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
filteredImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
filterExposureTimeX - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
filterExposureTimeX - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
filterFileExtension(Vector<String>, File) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Method filters out the rawFileList based of the file extension of the parameter selectedFile.
filterFluorophoreX - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
filterFluorophoreX - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
filterGaussianStdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Standard deviation of the filter's gaussian kernel.
filterGaussianStdDevTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Text field used to enter the standard deviation of the filter's gaussian kernel.
filterI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
filterID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter
filterID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
filterIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The number of filter passes to make.
filterIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Number of filter iterations.
filterIterationsTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Text field used to enter the number of filter iterations.
filterKernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size of the filter kernel to use.
filterLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
filterLength - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
filterName - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
filterNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
filterOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
filterOrder - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
filterOrder - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
filterOrder - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
filterOrder - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
filterOrder - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
filterOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
filterOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
filterOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
filterOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
filterOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
filterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
filterPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
filterR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
filterRefDocumentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: FilterRef.
filterRefFilterID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
filterRGB(int, int, int) - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
filters - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
filterSet - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter: or this one:.
filterSingleChannel(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
filterSingleColorChannel(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
filterTurretArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
filterType - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
filterType - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
filterType - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
filterType - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
filterType - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
filterType - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
filterType - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
filterType - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
filterType - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
filterType - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
filterType - Variable in class gov.nih.mipav.view.ViewImageFileFilter: Filter type of this filter.
filterType - Variable in class gov.nih.mipav.view.ViewOpenFileUI: Indicate what the current filter should be on opening the the dialog.
FilterType(String, String, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter.FilterType: Creates a new FilterType object.
filterTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
filterTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
filterTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
filterTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
filterTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
filterVal1 - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
filterVal1 - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
filterVal1 - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
filterVal1 - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
filterVal1 - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
filterVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
filterVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
filterVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
filterVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
filterVal2 - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
filterVal2 - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
filterVal2 - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
filterVal2 - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
filterVal2 - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
filterVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
filterVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
filterVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
filterVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
filtxy - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
filtz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
fImageBMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
fImageMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Min and Max image intensity and color values:.
final_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
final_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
final_H - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
final_level - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
final_R - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
final_W - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
finalBData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
finalColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalColorA_MIP - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalColorAB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalColorAB_MIP - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalColorB_MIP - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
finalContours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: final voi contour shapes
finalData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
finalData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
finalData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
FinalFrror() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: Return scale fit of AAM
finalGData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
finalImage - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
finalImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Calls garbage collector to release system resources.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: Clean up memeory.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: Calls garbage collector to release system resources.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Clean up memory used by the algorithm.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: finalize - sets class storages arrays to null so that System.gc() can free the memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: finalize - sets class storages arrays to null so that System.gc() can free the memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: finalize - sets class storages arrays to null so that System.gc() can free the memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLLE: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuantify: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: Calls garbage collector to release system resources.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Clean up memory used by the algorithm.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThinning2D: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: finalize
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: finalize -
finalize() - Method in class gov.nih.mipav.model.algorithms.Bessel: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.BesselEP: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.FirstOrderFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ScopedExecutionTimer
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SizedCostFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DestructorCountingCostFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticTestFunction
finalize() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: finalize
finalize() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this method cleans up the proc dir if success is false and it sets the lists to null.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Sets class storages arrays to null so that System.gc() can free the memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Clean up memory used by the algorithm.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: finalize - sets class storages arrays to null so that System.gc() can free the memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.Gamma: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
finalize() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.LightboxGenerator: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase: Prepare this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.Psi: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Override of Object method called by garbage collection.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: finalize - prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Cleans up memory.
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Used to make sure socket has properly been closed.
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
finalize() - Method in class gov.nih.mipav.model.file.FileAfni: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileAnalyze: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileAvi: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileBase: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileBFLOAT: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileBioRad: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileBMP: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileBRUKER: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileCheshire: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileCOR: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileCZI: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicom: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicomBase: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicomKey: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicomTag: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo
finalize() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileDM3: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileFits: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileGESigna4X: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileGESigna5X: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileICS: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileImageXML: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: Cleans up the thumbnail AWT Image and int[] array.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoBase: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoDicom: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInfoXML: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileInterfile: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileJP2: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileJSON: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileLIFF: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileLSM: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMATLAB: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMGH: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMicroCat: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMinc: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileMRC: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileNIFTI: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileNRRD: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FilePackBit: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FilePARREC: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileRaw: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileRawChunk: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSiemensText: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSPM: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSTK: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSurfaceRefXML: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSurfaceXML: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileSVS: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileTiff: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileTMG: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileXML: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.model.file.FileZVI: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.scripting.ParserEngine: Clean up memory used by the parser engine and make sure the reader we used is closed.
finalize() - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Cleanup memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferBase: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferBoolean: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferByte: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferDouble: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferFloat: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferInt: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferLong: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferShort: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferUByte: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferUInt: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.BufferUShort: Clean up memory.
finalize() - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.structures.event.VOIEvent: cleanup.
finalize() - Method in class gov.nih.mipav.model.structures.event.VOIVectorEvent: cleanup.
finalize() - Method in class gov.nih.mipav.model.structures.IntVector: Cleans the memory used by the int vector.
finalize() - Method in class gov.nih.mipav.model.structures.ModelImage: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.model.structures.ModelLUT
finalize() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.model.structures.RealPolynomial: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Prepares this class for cleanup.
finalize() - Method in class gov.nih.mipav.model.structures.TransferFunction: Cleans up memory.
finalize() - Method in class gov.nih.mipav.model.structures.VOI
finalize() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: finalize
finalize() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: finalize
finalize() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
finalize() - Method in class gov.nih.mipav.view.JPanelProgressBar: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.PatientSlice: Clean up memory used by the component.
finalize() - Method in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Called by garbage collector to free up object memory.
finalize() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Called by the garbage collector.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: finalize - calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Calls disposeLocal.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Delete all local member variables:
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: Called by the garbage collector.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Calls disposeLocal.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Calls finalize.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Used to call dispose of this class to clean up memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Used to call dispose of this class to clean up memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Finalize to free memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Cleans up memory from gc.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Calls disposeLocal.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Calls garbage collector to release system resources.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Calls garbage collector to release system resources.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Clean up some resources!
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: finalize - calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Cleans up memory from gc.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Call dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: finalize - calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Calls disposeLocal.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Calls disposeLocal to clean up memory, and then call super.finalize();
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast: Call from the parent frame to dispose memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp: Call from the parent frame to dispose memory.
finalize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: Calls disposeLocal.
finalize() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Clear up memory from gc.
finalize() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Calls finalize().
finalize() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calls dispose.
finalize() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Clean up some resources.
finalize() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB: Clean up some resources!
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: finalize
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: finalize
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans: Prepares this class for destruction.
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM: Prepares the class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM: Prepares class for cleanup.
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
finalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM
finalize() - Method in class gov.nih.mipav.view.ViewControlsImage: Clean up memory.
finalize() - Method in class gov.nih.mipav.view.ViewJComponentBase: Clean up some resources!
finalize() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Calls dispose to dump this instance.
finalize() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Clean up some resources!
finalize() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Clean up some resources!
finalize() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Clean up some resources.
finalize() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Cleans up memory.
finalize() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Clean up memory used by the component.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameBase: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameImage: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Cleans memory.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Finalizes and closes the window.
finalize() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
finalize() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Clean up the panel memory.
finalize() - Method in class gov.nih.mipav.view.ViewMenuBar: Clean up memory used by this class.
finalize() - Method in class gov.nih.mipav.view.ViewMenuBuilder: Clean up memory used by the menu builder.
Finalize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Finalize(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
finalize1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
finalize2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
FinalizeIterationAndCheckIfMinimizerCanContinue() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
finalizeLocal() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Clean up some resources!
finalizeLocal() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Clean up some resources!
finalizeLocal() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Clean up some resources!
finalizeLocal() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Clean up some resources!
finalMaskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: Model Images
FinalModel() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Get the final model
finalPoint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Final point when optimization is complete.
finalPoint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Final point when optimization is complete.
finalRData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
finalXexcl - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
finalYincl - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
find(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Return the most specific value stored for this byte sequence.
find(byte[], int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Return the most specific value stored for this byte sequence.
find(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
find(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
find(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
find(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
find(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
find(Point2f, MjVector2f, Point2f, float, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive: Intersection of a the line P+t*D and the circle |X-C| = R.
find(Point2f, MjVector2f, Point2f, MjVector2f, MjVector2f, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive: Intersection is a solution to P0+s*D0 = P1+t*D1.
FIND - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
find_best_colors(libjpeg.jpeg_decompress_struct, int, int, int, int, byte[], byte[]) - Method in class gov.nih.mipav.model.file.libjpeg
find_best_colors(libjpeg.jpeg_decompress_struct, int, int, int, int, short[], short[]) - Method in class gov.nih.mipav.model.file.libjpeg
find_best_csnrs(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
find_biggest_color_pop(libjpeg.box[], int) - Method in class gov.nih.mipav.model.file.libjpeg
find_biggest_volume(libjpeg.box[], int) - Method in class gov.nih.mipav.model.file.libjpeg
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
FIND_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
find_nearby_colors(libjpeg.jpeg_decompress_struct, int, int, int, byte[]) - Method in class gov.nih.mipav.model.file.libjpeg
find_nearby_colors(libjpeg.jpeg_decompress_struct, int, int, int, short[]) - Method in class gov.nih.mipav.model.file.libjpeg
find_nearest(KDTree.kdnode, double[], double, KDTree.res_node, int, int) - Method in class gov.nih.mipav.model.algorithms.KDTree
find_nearest_chebyshev(KDTree.kdnode, double[], double, KDTree.res_node, int, int) - Method in class gov.nih.mipav.model.algorithms.KDTree
find_ordering(int, int, int, int, int[], int[], int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
find_tform_ransac(SIFT3D.Ransac, SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
find3dBfrequency() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
findArbitraryClipping - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: flag indicates arbitrary clpping bounding frame being picked.
findAverageDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findBestGradientChange(Vector3f, Vector3f, float, float[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: From the mid point of normal line, tracing both inward and outward diection along the normal line
findBestGradientChange(Vector3f, Vector3f, float, float[], float[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findBestGradientChange(Vector3f, Vector3f, float, float[], float[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findBestGradientChange(Vector3f, Vector3f, float, float[], float[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findBestGradientChange(Vector3f, Vector3f, float, float[], float[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findBestGradientChange(Vector3f, Vector3f, float, float[], float[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findBestImageNMI(int, int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: NMI based 2D slice image similarity measure.
findBestImageNMI(int, int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: NMI based 2D slice image similarity measure.
findBestImageNMI(int, int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: NMI searching between target image and AAM atlas.
findBestSplit(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplit(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplit(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplit(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitExtraTrees(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitExtraTrees(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplitExtraTrees(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitExtraTrees(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitMaxstat(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitMaxstat(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueAUC(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueExtraTrees(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueExtraTrees(int, int, double, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitValueExtraTrees(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitValueExtraTrees(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplitValueExtraTreesUnordered(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueExtraTreesUnordered(int, int, double, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitValueExtraTreesUnordered(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitValueExtraTreesUnordered(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplitValueLargeQ(int, int, double, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitValueLargeQ(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitValueLargeQ(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplitValueLogRank(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueLogRankUnordered(int, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
findBestSplitValueSmallQ(int, int, double, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitValueSmallQ(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitValueSmallQ(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBestSplitValueUnordered(int, int, double, int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
findBestSplitValueUnordered(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
findBestSplitValueUnordered(int, int, int, int[], int, double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
findBlackRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findBlackRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findBlackRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findBlackRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findBorders(byte[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA: FINDBORDERS Returns an binary image with the regions' boundaries of the input image I.
findBoundaryNarrowBand() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Voting based tracing for the final prostate boundary.
findBoundingContour(int, VOI, VOI, VOI, Vector3f, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findBoundingContour(int, VOI, VOI, VOI, Vector3f, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findBoundingContour(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findBoundingContour(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findBoundingContour(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findBoundingContour(int, Vector3f, ModelImage, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findBoundingContour(int, Vector3f, ModelImage, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findBoundingContour(int, Vector3f, ModelImage, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findBoundingContour_condyle(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findBoundingContour_condyle(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findBoundingContour_condyle(int, VOI, VOI, VOI, Vector3f, ModelImage, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findBounds() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method finds the bounding box when CROP apply to 2D, 3D VOI images.
findBranches(int, int, int, boolean[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
findBufferMinMax(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Finds the local maximum and minimum values in the given range in order, as given by the starting and stoping values.
findBufferMinMax(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Finds the local maximum and minimum values in the given range in order, as given by the starting and stoping values.
findBufferMinMax(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Finds the local maximum and minimum values in the given range in order, as given by the starting and stoping values.
findBurnPoint(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Check whether the burning sphere is picked or not.
findBurnPoint(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Check whether the burning sphere is picked or not.
findClass(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
findCompatibleType(ModelImage, VOIBase, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
findCompIndex(Component[], Component.Identifier, String) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
FindConnectedComponent(Vertex, HashMap<Vertex, Vertex>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
findCornerEdge(int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
findCornerEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findCornerEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findCornerEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findCornerEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findCornerEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findCurveSegment(int, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
findDiffusion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
findDiffusion - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
findDiffusionCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
finddisconnected(int[][]) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
findEdgeJunctions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
findEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findEdgeOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findEdges(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Finds the edges of the objects in an image.
findEdges(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Finds the edges of objects.
findEdges(int, boolean[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Go through the edge list find the the edge specified.
findEdges(int, boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Go through the edge list find the the edge specified.
findEdgesAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
findEdgesAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
findEnergyFile() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Tries to find the energy file that should have the name - sourceImageName_gm.xml and puts it into the text box and sets the use precalculated checkbox to true.
fIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction
findFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Computes which voxels in the ModelImage are face voxels.
findFaceX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: The head points along the X axis: rays are traced in the +/- x direction:
findFaceY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: The head points along the Y axis: rays are traced in the +/- y direction:
findFaceZ() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: The head points along the Z axis: rays are traced in the +/- z direction:
findFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.ViewJFrameBase: Finds the FileFilter that matches the file type.
findFilter(JFileChooser, int) - Static method in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
findGain(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
findGreyRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findGreyRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findGreyRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findGreyRegionOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findGrowingPlate(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findHoles(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern
findHolesOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findHolesOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findHolesOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findHolesOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findHolesOnImage(int, int, ModelImage, int, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findImageOffset(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: gets the bottom end of the image. for any image but color images, the bottom end is defined as the buffer minimum for all images except color images; there the offset is defined to be zero
findImageOffset(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: gets the bottom end of the image. for any image but color images, the bottom end is defined as the buffer minimum for all images except color images; there the offset is defined to be zero
findInHash(AlgorithmMeanShiftClustering.fams_hash_entry2[][], int[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
findInitialFromData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
findInitialFromData - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
FindInterpolatingPolynomial(Vector<CeresSolver.FunctionSample>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
findIntersection(MjPrimitive.Ray2f, MjPrimitive.Segment2f, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive: The return quantity is 0 if the objects do not intersect, or is 1 or 2 if they do intersect.
findIntersection(MjPrimitive.Segment2f, MjPrimitive.Circle2f, Point2f[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive: The value is 0 if the objects do not intersect.
FindInvalidValue(int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
findIsolines() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
findJunctionAppearanceWeight(int, int, byte[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findJunctionNeighbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findJunctions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
findLargestRegion(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Find the largest region within a mask image.
findLevel(Node, Node, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Finds the depth, or level of the target node from the Root node.
FindLinearPolynomialRoots(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
findMaskExtents(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
findMaskExtents(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
findMax() - Method in class gov.nih.mipav.view.dialogs.JDialogZoom: Finds the maximum allowable magnification for the image.
findMax(int, int, Vector3f[], float, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
findMaxMeshDistance(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
findMaxWidth(Vector3f, double[], boolean) - Method in class gov.nih.mipav.model.structures.VOI: This is used by the method maxWidth.
findMedian(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
findMin(Point3f, int, int, Point3f, Point4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: findMin finds the point (newpoint) along the edge that connects the points Side-Middle that minimizes the distance Start-newpoint-End.
findMin(TriMesh, Vector3f, int, int, Vector3f, Vector4f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: findMin finds the point (newpoint) along the edge that connects the points Side-Middle that minimizes the distance Start-newpoint-End.
FindMinimumOnTrustRegionBoundary(Vector2d) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
findMinimumPowerOfTwo(int) - Static method in class gov.nih.mipav.util.MipavMath: Calculate the minimum power of two which is greater or equal to the number.
findMinRoot() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Returns the node with the smallest number of 'parent' nodes.
findMissingSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
findNarrowBand(JDialogProstateSegmentationRegBSpline3D.Edge, JDialogProstateSegmentationRegBSpline3D.Edge, JDialogProstateSegmentationRegBSpline3D.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Find the narrow band regions around VOI contours.
findNearestAnnotation(VOI, Vector3f, Vector3f, Vector3f) - Static method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
findNeighbor(double, int[], int) - Method in class gov.nih.mipav.model.algorithms.SIFT
findNewMeshes(ModelTriangleMesh, LinkedList) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Used in cutting closed paths and creating new meshes to export to the scene graph.
findNewMeshes(TriMesh, LinkedList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Used in cutting closed paths and creating new meshes to export to the scene graph.
findNextJunction(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
findNextJunctions(AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
findNode(DefaultMutableTreeNode, String) - Static method in class gov.nih.mipav.model.file.FileMincHDF: Recursively finds the node within a tree with a given name.
findNodeColor(Node, int, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Recursively finds the node color at a target level of the tree.
findOptimalKL - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
findOptimalKL - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
findPaintBorder(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Finds a set of lines which surround the paint in the image.
findPickedObject(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseListener.
findPickingPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
findPoint(VOI, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
findPointsOfLine(Vector<Vector3f>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
findPointsOfLine(Vector<Vector3f>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
FindPolynomialRoots(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
findPositionAndCurvature(Vector<Vector3f>, Vector<Float>, boolean, double[], double[], double[], double, double, int[], int, double, double[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds the position/curvature along a VOI.
findPositionAndIntensity(ModelImage, Vector<Vector3f>, Vector<ColorRGB>) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds the position/intensity along a VOI.
findPositionAndIntensity(Vector3f, Vector3f, ModelImage, Vector<Vector3f>, Vector<ColorRGB>) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds the positions and intensities along a line-segment of the VOI.
findProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: flag indicates the probe being picked.
findProbe(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Check whether the probe being picked or not.
findProbe(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Check whether the probe being picked or not.
findProbe(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Find the probe with the given geometry shape.
findProbe(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Check whether the probe being picked or not.
findProbe(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Check whether the probe being picked or not.
FindQuadraticPolynomialRoots(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
findRangeX(Point, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
findRangeX(Point, double, double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
findRegion(JDialogProstateSegmentationRegBSpline3D.Edge, float, float, Vector<JDialogProstateSegmentationRegBSpline3D.PolarPoint>, JDialogProstateSegmentationRegBSpline3D.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Looking for the narrow band region.
findResource(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
findResources(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
findResults - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: List of the results of a DICOM query.
findRoot() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Finds the Root of the tree.
findRoot(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
findScaleSpaceExtrema(ModelImage[][], ModelImage[][], int, double, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
findSections(VOI, float[][], Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findSections(VOI, float[][], Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findSections(Vector3f[], int, float[][], Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findSections(Vector3f[], int, float[][], Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findSections(Vector3f[], int, float[][], Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findSeedPoints(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Mark all points within the image which match a certain intensity with point VOIs.
findSmallest() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: The findSmallest function searches through the list of vertices that are not yet relaxed but that have been visited by the Dijkstra Search, so that the weight factor is not Float.MAX_VALUE, but also is not the minimum value for that node.
findSmallest() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The findSmallest function searches through the list of vertices that are not yet relaxed but that have been visited by the Dijkstra Search, so that the weight factor is not Float.MAX_VALUE, but also is not the minimum value for that node.
findSpaceNavigator(Controller[]) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
findSphere(Point3, Point3, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
findStrokeInterval(double, double, short) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
findThresholdedRegion(int, int, byte[], int, int, int, boolean, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
findThresholdedRegion(int, int, byte[], int, int, int, boolean, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findToken(int[][]) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
findToken(int[][]) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
findTotalBins(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: finds the total number of bins based on the type of image.
findTotalBins(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: finds the total number of bins based on the type of image.
FindTriangle(CAAMPoint, int[], double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Find the corresponding triangle in the source mesh for a point.
findTriPoints(int, int, LinkedList) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Find the next side triangle index.
findTriPoints(int, int, LinkedList<Integer>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Find the next side triangle index.
findTwoIslands(ModelImage, int[], int[], int[], VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findTwoIslands(ModelImage, int[], int[], int[], VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findTwoIslands(ModelImage, int[], int[], int[], VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findType(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Find the type able to contain the full range of the data.
findType(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Find the type able to contain the full range of the data.
findType(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Find the type able to contain the full range of the data.
FindVacantFilename(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Finds a file name that is not 'occupied'.
FindVacantFilename(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Finds a file name that is not 'occupied'.
FindValidViews(HashSet<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
findVisible() - Method in class gov.nih.mipav.view.JPanelStatisticsList: only mark a VOI property to be visible for certain kinds of images.
findVisibleDicom() - Method in class gov.nih.mipav.view.JPanelAnonymizeImage: only mark a tag to be visible if it exists in the file info.
findVisibleMinc() - Method in class gov.nih.mipav.view.JPanelAnonymizeImage: only mark a tag to be visible if it exists in the file info.
findVOIIndentations2D(ModelImage, int, Vector<VOIBase>, boolean) - Method in class gov.nih.mipav.model.structures.VOIBase
findVOIpointsInRange(JDialogProstateSegmentationRegBSpline3D.Edge, Vector<JDialogProstateSegmentationRegBSpline3D.PolarPoint>, int, int, JDialogProstateSegmentationRegBSpline3D.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Tracing generated VOI tables, convert it from image coordinate to Polar coordinate.
findWall() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findWall(AlgorithmNetworkSnake.SnakeNode) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
findWeakConnectedEdgeOnImageHorizontal(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findWeakConnectedEdgeOnImageHorizontal(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findWeakConnectedEdgeOnImageHorizontal(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findWeakConnectedEdgeOnImageHorizontal(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findWeakConnectedEdgeOnImageHorizontal(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findWeakConnectedEdgeOnImageVertical(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
findWeakConnectedEdgeOnImageVertical(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
findWeakConnectedEdgeOnImageVertical(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
findWeakConnectedEdgeOnImageVertical(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
findWeakConnectedEdgeOnImageVertical(int, int, ModelImage, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
findWeakEdge(int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
findWeakEdge(int[][], int, int, int, int, int, boolean, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal
FindWithDefault(HashMap<double[], CeresSolver.ParameterBlock>, double[], CeresSolver.ParameterBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
FindWithDefault(HashMap<String, CeresSolver.CallStatistics>, String, CeresSolver.CallStatistics) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
fine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value text field.
fine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
fineAngle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: The fine angle step to use in each dimension when registering the original image against the flipped image.
fineLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value label.
fineLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
fineMovement() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNumX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Number of passes that will be made in the coarse sampling and fine sampling.
fineNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
fineNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
fineNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
fineNumY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
fineNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
fineNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
fineNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
fineNumZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
finePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
finePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
finePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
finePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
finePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
finePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
finer - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
fineRate - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Coarse and fine sampling parameters.
fineRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
fineRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
fineRate - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
fineRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
fineRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
fineRateText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
fineRateTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
fineRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Coarse and fine sampling parameters.
fineRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Coarse and fine sampling parameters.
fineRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Coarse and fine sampling parameters.
fineRateX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Coarse and fine sampling parameters.
fineRateX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
fineRateY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
fineRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
fineRateZ - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
fineRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
fineRateZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
fineValue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Coarse and fine value.
fineValue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
fInfoBase - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
finish(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Closes the geodesic curve.
finish(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Closes the geodesic curve.
finish_input_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
finish_input_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_INPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_output_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
finish_output_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_OUTPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_pass - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
finish_pass - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
finish_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
finish_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
finish_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_pass_1_quant(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS_1_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS_2_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_pass_huff(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS_HUFF - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_pass1(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS1 - Static variable in class gov.nih.mipav.model.file.libjpeg
finish_pass2(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
FINISH_PASS2 - Static variable in class gov.nih.mipav.model.file.libjpeg
finishBlank - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
finishEPIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
finishGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: finishGeodesic, called when the "Finish Closed" or "Finish Open" buttons are pressed, finish the current geodesic polyline.
finishGeodesic(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: finishGeodesic, called when the "Finish Closed" or "Finish Open" buttons are pressed, finish the current geodesic polyline.
finishPreProcessingPanel(ModelImage, ModelImage, TransMatrix, String, TransMatrix[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
finishQuote - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
finishTensorPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
finishTensorPanel(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
finishWorkingLists(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Adds the working paths to the finished path lists, combining the segments in the working paths into one path.
finishWorkingLists(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Adds the working paths to the finished path lists, combining the segments in the working paths into one path.
finite_diff_cost_function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientChecker
fippft3(double[][][][], int[], double[], int[], double[][][][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fireCoordinateChange(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Tell coordinate change listeners about a coordinate change (after changing the coordinate to image volume space from the tri-planar space).
fireImageRegistryChanged() - Method in class gov.nih.mipav.view.ImageRegistryMonitor: Notify all listeners that have registered interest for notification on this event type.
fireMemoryChanged() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: Notify all listeners that have registered interest for notification on this event type.
fireProgressStateChanged(float, String, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Updates listeners of progress status.
fireProgressStateChanged(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Notifies all listeners that have registered interest for notification on this event type.
fireProgressStateChanged(int) - Method in class gov.nih.mipav.model.file.FileBase: Notifies all listeners that have registered interest for notification on this event type.
fireProgressStateChanged(int, String, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Notifies all listeners that have registered interest for notification on this event type.
fireProgressStateChanged(int, String, String) - Method in class gov.nih.mipav.model.file.FileBase: Notifies all listeners that have registered interest for notification on this event type.
fireProgressStateChanged(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Notifies listeners that have registered interest for notification on this event type.
fireProgressStateChanged(String) - Method in class gov.nih.mipav.model.file.FileBase
fireProgressStateChanged(String, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Updates listeners of progress status.
fireProvenanceStateChanged(ProvenanceEntry) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Notify the listeners (dialogs) that a provenance entry has been stored
fireSpaceNavEvent() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
fireVOIadded(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Fires a VOI event based on the VOI. calls the listener's addedVOI() method.
fireVOIBaseAdded(VOIBase) - Method in class gov.nih.mipav.model.structures.VOI: Fires a VOI event based on the VOI. calls the listener's addedVOI() method.
fireVOIBaseRemoved(VOIBase) - Method in class gov.nih.mipav.model.structures.VOI: Fires a VOI event based on the VOI. calls the listener's removedVOI() method.
fireVOIColorChange(Color) - Method in class gov.nih.mipav.model.structures.VOI: Deprecated.
fireVOIremoved(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Fires a VOI event based on the VOI. calls the listener's removedVOI() method.
fireVOIselection() - Method in class gov.nih.mipav.model.structures.VOI: Fires a VOI event based on the VOI. calls the listener's removedVOI() method.
fireVOISelectionChange(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
fireVOISelectionChange(VOI) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Communicates a selection change to all UpdateVOISelectionListeners.
fireVOISelectionChange(VOI, VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
fireVOISelectionChange(VOI, VOIBase) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Communicates a selection change to all UpdateVOISelectionListeners.
first - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
first - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair
first - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Pair
first - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet
first - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Pair
first - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
first - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair
first - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: 0 if the first packet
first - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: ------------------------ Class variables ------------------------ Double precision machine parameters found in routine dlamch.
first - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Flag to indicate first event.
first - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Flag to indicate first event.
first - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Flag to indicate first event.
first - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: First time accessed.
first - Variable in class gov.nih.mipav.view.renderer.MouseEventVector: First time accessed.
first - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair
first() - Method in class gov.nih.mipav.model.structures.HQueue: first - returns the last value in the first queue location that has image indexes in it.
first_addon_message - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
first_bound - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.lmt_node
FIRST_CALL - Variable in class gov.nih.mipav.model.algorithms.CVODES
first_dlartg - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Double precison machine variables found in routine dlartg.
first_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Found in routine dlatb4
first_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
FIRST_ELEMENT - Variable in class gov.nih.mipav.model.file.FileDicom: Location of first element.
first_gauss - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.GSS_filters
first_level - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
first_level - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.GSS_filters
first_level - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
first_marker(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
first_octave - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
FIRST_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: First midsagittal reference point.
first_undef_row - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
first_undef_row - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
FIRST_VOLUME_TISSUE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
FIRST_VOLUME_TISSUE - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
first_zlartg - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations: Double precision machine variables found in routine zlartg.
first_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations: Found in routine zlatb4
first6ClipPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: flag indicate the first time 6 clipping plane branch switch.
first6ClipPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: flag indicate the first time 6 clipping plane branch switch.
firstAssigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
firstAssigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
firstAssigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
firstAssigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
firstAssigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
firstAt(int) - Method in class gov.nih.mipav.model.structures.HQueue: firstAt - removes and returns last element at a specific queue index.
firstAttempt - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
firstAxTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 310 Start time(secs) of first axial in exam.
firstChar - Variable in class gov.nih.mipav.model.file.FileSVS
firstChar - Variable in class gov.nih.mipav.model.file.FileTiff
firstClick - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
firstClipArbi - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: flag indicate the first time arbitrary clipping plane branch switch.
firstClipArbi - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: flag indicate the first time arbitrary clipping plane branch switch.
firstDraw - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
firstElement() - Method in class gov.nih.mipav.model.structures.IntVector: Gets the first element of array without removing it.
firstFileInfoDicom - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: first fileinfo dicom...used for list file info
firstGaussianAmplitude - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
firstGaussianMean - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
firstGaussianMeanBin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
firstGaussianStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
firsti - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
firstImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
firstImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
firstImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: First image (Source image).
firstImage - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Active image when algorithm is called.
firstIndex - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
firstKindComplex() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Port of Algorithm 707, Collected Algorithms from ACM.
firstKindComplexArgument() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: This code is a port of the FORTRAN routine CCHG from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 400-402.
firstKindRealArgument() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: This code is a port of the FORTRAN routine CHGM from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 398-400.
firstMidSagPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
firstMoment0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
firstMoment1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
firstName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
firstName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: Elements.
firstName - Variable in class gov.nih.mipav.model.file.FileInfoOME.Person
firstName - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
firstOctave - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < number of octaves
firstOctave - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Image height
FirstOrderFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.FirstOrderFunction
firstOrientValue - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: Slice Orientation Value (sag/cor/tra)
firstPageButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
firstPageMenuItem - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
firstPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
firstPoint - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
firstPoint - Variable in class gov.nih.mipav.view.RubberbandPolyline: DOCUMENT ME!
firstPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
firstPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
firstPtDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
firstPtr - Variable in class gov.nih.mipav.model.structures.IntVector: The index of the first valid data element in the vector.
firstr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
firstResolutions - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
firstSliceAfterBleach - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
firstSliceAfterBleach - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
firstSliceAfterBleach - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
firstSliceNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
firstSliceNum - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
firstSliceNumText - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
firstSlicePoint - Variable in class gov.nih.mipav.model.structures.VOIPoint: True if this point is the 1st point in a slice/frame of Polyline_Slice
firstStretch - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
firstTime - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
firstTimeCheckMidShaft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
firstTimeCheckMidShaft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
firstTimeVolView - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Keep track of whether we're switching to the volume renderer for the first time.
firstVal - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue.Values: DOCUMENT ME!
firstVolumeTissueRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
fis - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
fis - Variable in class gov.nih.mipav.model.file.FileNIFTI
fisher(double, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
fisher_bounds() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
fit(int[][], GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double[][][], String, double, double, String, int, String, GaussianMixtureModelsIncompleteSamples.Background, double, int, int, int[], int[], int[], int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
Fit24DModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel: Creates a new Fit24DModel object.
Fit24DModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel: Creates a new Fit24DModel object.
Fit25HModel(int, double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel: Creates a new Fit25HModel object.
FitAll() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAll: Creates a new Fit24DModel object.
FitAllEP() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllEP: Creates a new Fit24DModel object.
FitAllNL2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
FitCorrelationModel(int, float[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel: Creates a new FitCorrelationModel object.
FitCovarianceModel(int, float[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel: Creates a new FitCovarianceModel object.
FitdeHoog1(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog1: Creates a new FitExpModel object.
FitdeHoog10(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog10: Creates a new FitExpModel object.
FitdeHoog11(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog11: Creates a new FitExpModel object.
FitdeHoog12(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog12: Creates a new FitExpModel object.
FitdeHoog13(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog13: Creates a new FitExpModel object.
FitdeHoog14(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog14: Creates a new FitExpModel object.
FitdeHoog15(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog15: Creates a new FitExpModel object.
FitdeHoog16(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog16: Creates a new FitdeHoog16 object.
FitdeHoog2(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog2: Creates a new FitExpModel object.
FitdeHoog3(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog3: Creates a new FitExpModel object.
FitdeHoog4(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog4: Creates a new FitExpModel object.
FitdeHoog5(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog5: Creates a new FitExpModel object.
FitdeHoog6(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog6: Creates a new FitExpModel object.
FitdeHoog7(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog7: Creates a new FitExpModel object.
FitdeHoog8(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog8: Creates a new FitExpModel object.
FitdeHoog9(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog9: Creates a new FitExpModel object.
FitDEMRI3ConstrainedModel(int, double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel: Creates a new FitDEMRI3ConstrainedModel object.
FitDoubleExponentialModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel: Creates a new FitDoubleExponentialModel object.
FitDoubleExponentialNoWholeConstrainedModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel: Creates a new FitDoubleExponentialNoWholeConstrainedModel object.
FitDoubleExponentialNoWholeModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel: Creates a new FitDoubleExponentialNoWholeModel object.
FitDoubleExponentialNoWholeNL2solModel(int, double[], float[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel: Creates a new FitDoubleExponentialNoWholeNL2solModel object.
fitExp - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates exponential fitting in progress
FitExpModel(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitExpModel: Creates a new FitExpModel object.
FitExpModelqd(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitExpModelqd: Creates a new FitExpModelqd object.
FitExponential - Class in gov.nih.mipav.model.algorithms: FitExponential -fits an array of points to an exponential of the type y = a0 + a1*exp(a2*x).
FitExponential() - Constructor for class gov.nih.mipav.model.algorithms.FitExponential: FitExponential - test constructor, builds and test function.
FitExponential(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.FitExponential: FitExponential.
FitExponential(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitExponential
FitExponential(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitExponential: Constructs new fit exponential.
FitFullIntModel(double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: Creates a new FitFullIntModel object.
FitFullIntModel2i(double, double, double, double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: Creates a new FitFullIntModel2i object.
FitFullIntModel2p(double, double, double, double, double, int, double[], double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: Creates a new FitFullIntModel2p object.
FitFullIntModel2s(double, double, double, double, double, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: Creates a new FitFullIntModel2s object.
fitFullModel(double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
FitFullModel2(double[], double, double, double, double[], double[], int[], int[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2: Creates a new FitFullModel2 object.
FitFullModelqd(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd: Creates a new FitFullModelqd object.
fitFunctions(ViewJFrameGraph.FitMode) - Method in class gov.nih.mipav.view.ViewJFrameGraph
fitFunctPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
fitFunctTypePanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
fitFunctVisibleCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
fitFunctVisiblePanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
fitGaussian - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates Gaussian fitting in progress
FitGaussian - Class in gov.nih.mipav.model.algorithms: FitGaussian -fits an array of points to a normal curve, general from f = a*exp(-(x-b)^2/2sigma^2) Will also perform thresholding techniques to determine useful data points for fitting
FitGaussian() - Constructor for class gov.nih.mipav.model.algorithms.FitGaussian: FitGaussian - test constructor, builds and test function.
FitGaussian(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.FitGaussian: FitGaussian.
FitGaussian(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitGaussian
FitGaussian(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitGaussian: Constructs new fit gaussian.
fitGV_peak1(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fitGV_peak2(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
FitIntensityProfile(int, double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile: Creates a new FitWholeNLConModel object.
fitLaplace - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates Laplace fitting in progress
FitLaplace - Class in gov.nih.mipav.model.algorithms: FitLaplace -fits an array of points to a normal curve, general from f = a*exp(Math.abs(x-mu)/beta) Will also perform thresholding techniques to determine useful data points for fitting
FitLaplace() - Constructor for class gov.nih.mipav.model.algorithms.FitLaplace: FitLaplace - test constructor, builds and test function.
FitLaplace(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.FitLaplace: FitLaplace.
FitLaplace(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLaplace
FitLaplace(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitLaplace: Constructs new fit laplace distribution.
FitLine - Class in gov.nih.mipav.model.algorithms: y = mx + b;.
FitLine - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
FitLine() - Constructor for class gov.nih.mipav.model.algorithms.FitLine: Creates a new FitLine object.
FitLine(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLine
FitLine(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitLine: FitLine.
fitLinear - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates linear fitting in progress
fitLorentz - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates Lorentz fitting in progress
FitLorentz - Class in gov.nih.mipav.model.algorithms: FitLorentz -fits an array of points to a lorentz distribution, thresholding techniques come from ViewJFrameGraph, no need to implement here
FitLorentz() - Constructor for class gov.nih.mipav.model.algorithms.FitLorentz: FitLorentz - test constructor, builds and test function.
FitLorentz(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.FitLorentz: FitLorentz.
FitLorentz(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLorentz
FitLorentz(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitLorentz: Constructs new fit lorentz distribution.
fitMode - Variable in class gov.nih.mipav.view.ViewJFrameGraph: Current mode for fitting functions
FitMode(String, Class) - Constructor for enum gov.nih.mipav.view.ViewJFrameGraph.FitMode
FitMosaicModel(int, double[][], int[], double[][], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel
fitMultiExponential - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates constant plus sum of decaying exponentials
FitMultiExponential - Class in gov.nih.mipav.model.algorithms: FitMultiExponential -fits an array of points to an multiexponential of the type y = a0 + a1*exp(a2*x) + a3*exp(a4*x) + ...
FitMultiExponential() - Constructor for class gov.nih.mipav.model.algorithms.FitMultiExponential: FitMultiExponential - test constructor, builds and test function.
FitMultiExponential(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitMultiExponential
FitMultiExponential(int, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.FitMultiExponential: FitMultiExponential assuming all exponentials are negative
FitMultiExponential(int, int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitMultiExponential: Constructs new fit multiexponential assuming all exponentials are negative.
fitNone - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates no curve fitting is taking place
FitOAR2DELSUNCModel(int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel: Creates a new FitOAR3DConstrainedModel object.
FitOAR2DLMModel(double[], int, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
FitOAR2DNL2solModel(double[], int[], double[], int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel: Creates a new FitSM2nl2solModel object.
FitOAR3DConstrainedModel(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel: Creates a new FitOAR3DConstrainedModel object.
FitOAR3DELSUNCModel(int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel: Creates a new FitOAR3DConstrainedModel object.
FitOAR3DLMModel(double[], int, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
FitOAR3DNL2solModel(double[], int[], double[], int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel: Creates a new FitSM2nl2solModel object.
fitparab(double[][], double[][], double[][], double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
fitParameters_peak1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fitParameters_peak2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
FitPiessens1(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens1: Creates a new FitSineModel object.
FitPiessens10(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens10: Creates a new FitSineModel object.
FitPiessens11(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens11: Creates a new FitSineModel object.
FitPiessens12(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens12: Creates a new FitSineModel object.
FitPiessens13(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens13: Creates a new FitSineModel object.
FitPiessens14(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens14: Creates a new FitSineModel object.
FitPiessens15(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens15: Creates a new FitSineModel object.
FitPiessens16(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens16: Creates a new FitPiessens16 object.
FitPiessens2(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens2: Creates a new FitSineModel object.
FitPiessens3(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens3: Creates a new FitSineModel object.
FitPiessens4(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens4: Creates a new FitSineModel object.
FitPiessens5(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens5: Creates a new FitSineModel object.
FitPiessens6(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens6: Creates a new FitSineModel object.
FitPiessens7(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens7: Creates a new FitSineModel object.
FitPiessens8(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens8: Creates a new FitSineModel object.
FitPiessens9(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens9: Creates a new FitSineModel object.
FitPure1DModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel: Creates a new FitPure1DModel object.
FitPure1DNoWholeModel(int, double[], float[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel: Creates a new FitSM2nl2solModel object.
Fitqd1(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd1: Creates a new FitExpModelqd object.
Fitqd10(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd10: Creates a new FitExpModelqd object.
Fitqd11(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd11: Creates a new FitExpModelqd object.
Fitqd12(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd12: Creates a new FitExpModelqd object.
Fitqd13(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd13: Creates a new FitExpModelqd object.
Fitqd14(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd14: Creates a new FitExpModelqd object.
Fitqd15(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd15: Creates a new FitExpModelqd object.
Fitqd16(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd16: Creates a new FitExpModelqd object.
Fitqd2(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd2: Creates a new FitExpModelqd object.
Fitqd3(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd3: Creates a new FitExpModelqd object.
Fitqd4(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd4: Creates a new FitExpModelqd object.
Fitqd5(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd5: Creates a new FitExpModelqd object.
Fitqd6(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd6: Creates a new FitExpModelqd object.
Fitqd7(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd7: Creates a new FitExpModelqd object.
Fitqd8(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd8: Creates a new FitExpModelqd object.
Fitqd9(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd9: Creates a new FitExpModelqd object.
fitRayleigh - gov.nih.mipav.view.ViewJFrameGraph.FitMode: Mode indicates Rayleigh fitting in progress
FitRayleigh - Class in gov.nih.mipav.model.algorithms: For -infinity < a < +infinity and b > 0 y = scale factor * (2/b)*(x - a)*exp(-((x-a)**2)/b)*u(x - a) where u(x-a) = 0 for x < a and = 1 for x >= a.
FitRayleigh() - Constructor for class gov.nih.mipav.model.algorithms.FitRayleigh: Creates a new FitRayleigh object.
FitRayleigh(int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitRayleigh
FitRayleigh(int, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.FitRayleigh: FitRayleigh.
FITS - Static variable in class gov.nih.mipav.model.file.FileUtility: FITS file type. extension: .fits
FitSineModel(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSineModel: Creates a new FitSineModel object.
FitSingleExponentialModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel: Creates a new FitSingleExponentialModel object.
FitSingleExponentialNoWholeModel(int, double[], float[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel: Creates a new FitSingleExponentialNoWholeModel object.
FitSM2ConstrainedModel(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModel: Creates a new FitDEMRI3ConstrainedModel object.
FitSM2ConstrainedModelC(int, double[], double[], double[][], double[], double[], double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC: Creates a new FitDEMRI3ConstrainedModel object.
FitSM2nl2solModel(int, double[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel: Creates a new FitSM2nl2solModel object.
fitSplinesToVolumeLookup2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fitSplinesToVolumeLookup3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fitsToScreen() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
fittedFunctions - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fitTestModel() - Method in class gov.nih.mipav.model.algorithms.Lmmin
fitTestModel() - Method in class gov.nih.mipav.model.algorithms.NESolve
fitTestModel() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Creates a new Fit24DModel object.
fitTestModel() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Creates a new Fit24DModel object.
fittingEngine - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
fittingLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
fittingLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
fittingTask(int, int, int, double[], double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fitToExternalFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
fitToFunction(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel: Fit to function - a3 + a4*[1 - ao*exp(a1*x) - (1 - a0)*exp(a2*x)].
fitToFunction(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LsqFit: fitToFunction communicates
fitToFunction(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
fitToFunction(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel: Fit to function - a0 - a1*(a2**x).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel: Fit to function - Math.pow((a[0] * Math.log(xSeries[i])),a[1]) + a[2]
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel: Fit to function - a0 - a1*(a2**x).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel: Fit to function - a3 + (1-a3)*[1 - ao*exp(a1*x) - (1 - a0)*exp(a2*x)].
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel: Fit to function - Fit to function - a3 + (1-a3)*[1 - ao*exp(a1*x) - (1 - a0)*exp(a2*x)].
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel: Fit to function - a1 + a2*[1 - 1/sqrt(1 + 4*PI*a0*x)].
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel: Fit to function - bottom + span*[1 - exp(-ln(2)*t/thalf)] a1 + a2*(1 - exp(-ln(2)*t/a0)).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAll: Fit to function - a0 - a1*(a2**x).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitExponential: Fit to function - a0 + a1*exp(a2*x).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitGaussian: Fit to function - a0*exp(-(t-a1)^2/(2*(a2)^2))
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLaplace: Fit to function - a0*exp(-|t-a1|/a2)
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLine: Fit line to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLorentz: Fit to function - a0/((t-a1)*(t-a1) + a2*a2)
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitMultiExponential: Fit to function - a0 + a1*exp(a2*t) + a3*exp(a4*t) + ...
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitRayleigh: Fit to function - a0 * (t-a1)*exp(-(t-a1)*(t-a1)/a2)*u(t - a1) with a2 > 0
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1Fitting: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2Fitting: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFitting: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFitting: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculation: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitExponential: Fit to function - a0 + a1*exp(a2*x).
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitGaussian
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitLaplace
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitLine: Fit line to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitLorentz
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential: Fit to function - a0 + a1*exp(a2*x) + a3*exp(a4*x) + ...
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.FitRayleigh: Fit Rayleigh to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: fitToFunction communicates with 3 protected variables param, nPts, and ctrlMat ctrlMat is used as a wrapper for ctrl or lctrl.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction2param: Fit to function.
fitToFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction3param: Fit to function.
fitToFunction(double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
fitToFunction(double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
fitToFunction(double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Lmmin
fitToFunction(DoubleDouble[], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllEP: Fit to function - a0 - a1*(a2**x).
fitToFunction(DoubleDouble[], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: fitToFunction communicates with 3 protected variables param, nPts, and ctrlMat ctrlMat is used as a wrapper for ctrl or lctrl.
fitToFunction(DoubleDouble[], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
fitToHessian(double[], double[][][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitToJacobian(double[][], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
fitToJacobian(double[][], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
fitToJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit: fitToJacobian communicates
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitExpModel: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitExpModelqd: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplace: Returns 'a' coefficients in power series where the second index is 0 for the real part and 1 for the imaginary part.
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: The second index is 0 for the real part and 1 for the imaginary part.
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog1: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog10: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog11: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog12: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog13: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog14: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog15: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog16: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog2: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog3: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog4: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog5: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog6: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog7: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog8: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitdeHoog9: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd1: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd10: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd11: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd12: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd13: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd14: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd15: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd16: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd2: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd3: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd4: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd5: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd6: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd7: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd8: DOCUMENT ME!
fitToLaplace(double, double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.Fitqd9: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSineModel: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens1: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens10: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens11: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens12: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens13: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens14: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens15: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens16: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens2: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens3: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens4: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens5: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens6: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens7: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens8: DOCUMENT ME!
fitToLaplace(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest.FitPiessens9: DOCUMENT ME!
fitToNumericalHessian(double[], double[][][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitToNumericalJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitToTestFunction(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Lmmin: lm_enorm.
fitToTestFunction(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitToTestFunction(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
fitToTestFunction(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
fitToTestFunction(DoubleDouble[], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
fitToTestHessian(double[], double[][][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitToTestJacobian(double[][], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
fitToTestJacobian(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.LsqFit
fitType - Variable in class gov.nih.mipav.view.ViewJFrameGraph: Combo box for selecting the fitting function type
FitWholeNL2solInt2(int, double[], float[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: Creates a new FitWholeNL2solInt2 object.
FitWholeNL2solModel(int, double[], float[], double[], int[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel: Creates a new FitWholeNL2solModel object.
FitWholeNLConInt2(int, double[], float[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: Creates a new FitWholeNLConInt2 object.
FitWholeNLConModel(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel: Creates a new FitWholeNLConModel object.
FitWholeNLConModel2(int, double[], float[], double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: Creates a new FitWholeNLConModel2 object.
FitWholeNLConModel3(int, double[], float[], double[], double, int, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: Creates a new FitWholeNLConModel3 object.
FitWholeNLConModelqd(int, double[], float[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd: Creates a new FitWholeNLConModelqd object.
FIVE - Variable in class gov.nih.mipav.model.algorithms.CVODES
fiveButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
fiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
fiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
FIX(double) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX(double) - Method in class gov.nih.mipav.model.file.libjpeg
FIX_0_298631336 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_0_390180644 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_0_541196100 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_0_765366865 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_0_899976223 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_1_175875602 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_1_501321110 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_1_847759065 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_1_961570560 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_2_053119869 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_2_562915447 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
FIX_3_072711026 - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
fix_output_length(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
fixConsistency() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
fixed - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
fixed - Variable in class gov.nih.mipav.model.structures.VOI: If true the VOI cannot be moved, if false this VOI can be moved.
fixed - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag that indicates if the VOI is movable.
fixed_bin - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
fixed_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
fixed_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
fixedCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
fixedColor - Static variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: set of colors for tree nodes, based on the mipav striped lut
fixedColor - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The colors for the surfaces.
fixedColor - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The colors for the surfaces.
fixedWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
fixedWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
fixErrorVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Replace the irregular shape or wrong shape VOI with adjacent neighbor VOI.
fixErrorVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Replace the irregular shape or wrong shape VOI with adjacent neighbor VOI.
fixErrorVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Fix the error VOIs from the Marked VOI vector.
fixFileTypeInfo(ModelImage) - Method in class gov.nih.mipav.model.structures.ModelImage: Fixes file information to resultant image structure.
fixHuffmanTable(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Sets up Huffman table based on values read in header.
fixMoveDestString(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: This is used to fix the padding (even length) of move destinations for some GE DICOM implementations.
fixpointField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
Fixture() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Fixture
fixupL(int, int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
fjac - Variable in class gov.nih.mipav.model.algorithms.Lmmin: fjac is an OUTPUT m by n array.
FL - gov.nih.mipav.model.file.FileDicomTagInfo.VR
flag - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
flag - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
flag - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
flag - Variable in class gov.nih.mipav.model.file.FileDicom: Header loop keeps executing when true
flag - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: flag needed when performing restore defaults *
flag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Flag indicating if the red bounding box is on or off.
flag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Flag indicating if box is on or off.
flag - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: flag needed when performing restore defaults *
flag - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Flag indicating if the red bounding box is on or off.
flag_predict_probability - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
flag_to_set_on_destruction_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticTestFunction
flag_zm - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < the set of patches.
flags - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
flags - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t
flags - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
flags - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
flags - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
flags - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
flags() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
Flags() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
flags_stride - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
flagsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
flagssize - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
flash - Variable in class gov.nih.mipav.model.file.FileSVS
flash - Variable in class gov.nih.mipav.model.file.FileTiff
flashPixVersion - Variable in class gov.nih.mipav.model.file.FileSVS
flashPixVersion - Variable in class gov.nih.mipav.model.file.FileTiff
flax - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 574 Phase contrast flow axis.
fLength - Variable in class gov.nih.mipav.model.file.FileDicomBase: Total length of the image file.
FLETCHER_REEVES - gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType
flg - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
flip - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
flip - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM
flip - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: flag indicates to flip y, z coordinate or not.
flip(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate: flip
flipAlgo - Variable in class gov.nih.mipav.model.file.FileFits
flipAlgo - Variable in class gov.nih.mipav.model.file.FileSVS
flipAlgo - Variable in class gov.nih.mipav.model.file.FileTiff
flipAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Algorithm used by the dialog.
flipAngle - Variable in class gov.nih.mipav.model.file.FileGESigna4X
flipAngle - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
flipAngle - Variable in class gov.nih.mipav.model.file.FileInfoMGH
flipAngle - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
flipAngle - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
flipAngle - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
flipAngle - Variable in class gov.nih.mipav.model.file.FilePARREC
FlipAngle - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
flipAngleAr - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
FlipAngleChangeListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener
flipAngleFields0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
flipAngleFields180 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
flipAngleIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
flipAnglePos - Variable in class gov.nih.mipav.model.file.FilePARREC
flipAxis - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Axis to flip along.
flipAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Axis to flip around.
flipAxisXRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Image is flipped vertically when selected
flipAxisYRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Image is flipped horizontally when selected
flipAxisZRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Image is flipped by depth when selected
flipHorizontal - Variable in class gov.nih.mipav.model.file.FileSVS
flipHorizontal - Variable in class gov.nih.mipav.model.file.FileTiff
flipLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
flipLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
flipLattice(VOI, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
FlipLR() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: FlipLR modifies the matrix with row preserved and columns flipped in the left/right direction.
flipMinimize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
flipNIFTIReadCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
flipObject - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Type of object to flip.
flipObject - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: The object to be flipped
flipSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
flipTopBottom(float[], FileInfoAnalyze) - Method in class gov.nih.mipav.model.file.FileAnalyze: Flips image.
flipTopBottom(float[], FileInfoImageXML) - Static method in class gov.nih.mipav.model.file.FileImageXML: Flips image.
flipTopBottom(float[], FileInfoNIFTI) - Method in class gov.nih.mipav.model.file.FileNIFTI: Flips image.
flipTopBottom(float[], FileInfoSPM) - Method in class gov.nih.mipav.model.file.FileSPM: Flips image.
flipTopBottom(ModelImage) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Flips image.
flipTopBottom(ModelImage) - Static method in class gov.nih.mipav.model.file.FileImageXML: Flips image.
flipTopBottom(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI: Flips image.
flipTopBottom(ModelImage) - Method in class gov.nih.mipav.model.file.FileSPM: Flips image.
FlipUD() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Flip matrix in up/down direction.
flipVertical - Variable in class gov.nih.mipav.model.file.FileSVS
flipVertical - Variable in class gov.nih.mipav.model.file.FileTiff
flipVoiCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: When checked, VOIs are flipped when image is flipped.
FLOAT - gov.nih.mipav.model.file.FileDicomTagInfo.NumType: An IEEE754:1985 32-bit float is stored in the tag's value.
FLOAT - gov.nih.mipav.model.file.FileSVS.Type: single precision 4 byte IEEE format
FLOAT - gov.nih.mipav.model.file.FileTiff.Type: single precision 4 byte IEEE format
FLOAT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type float (32 bits per voxel).
FLOAT - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
FLOAT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
FLOAT - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
FLOAT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type float (32 bits per voxel).
FLOAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
FLOAT_ATTRIBUTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FLOAT_IMAGE_TAG - Static variable in class gov.nih.mipav.model.file.FileDicom: The tag marking the start of the float image data.
FLOAT_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: A string with VR "OF" is stored in the tag's value.
FLOAT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type signed float.
FLOAT_STRING - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
floateq(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
floateq(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
floating - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages.ImageCellRenderer: DOCUMENT ME!
floatsPerTag - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
floatToBytes(float, boolean, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: converts from float to bytes
floatToShort - Variable in class gov.nih.mipav.model.file.FileWriteOptions
floatToShort - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
floatToShortCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
floatValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as a float.
floodCorrected - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
floodFill(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Identify voxels enclosed by the brain surface by using a flood fill.
floodFill(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Identify voxels enclosed by the brain surface by using a flood fill.
floodFill(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Identify voxels enclosed by the brain surface by using a flood fill.
floodFill(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Identify voxels enclosed by the brain surface by using a flood fill.
floodFill(short[], int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: 2D flood fill that forms a short mask.
floodFill(short[], int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: 2D flood fill that forms a short mask.
floodFill(short[], int, short, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: 3D flood fill that forms a short mask.
floodFill(BitSet, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
FloodFill - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
FloodFill(BitSet, int[]) - Constructor for class gov.nih.mipav.model.algorithms.FloodFill: Creates a new FloodFill object.
floodFill2D(Point) - Method in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
floodFill2DBitSet() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: 2D flood fill that forms a binary(BitSet) mask.
floodFill2DShort() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: 2D flood fill that forms a short mask.
floodFill3D(Point3D) - Method in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
floodFill3DBitSet() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: 3D flood fill that forms a binary(BitSet) mask.
floodFill3DShort() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: 3D flood fill that forms a short mask.
floodValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Flood value.
floor() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the largest (closest to positive infinity) value that is not greater than the argument and is equal to a mathematical integer.
Floor() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes floor() of each element.
Flow - Static variable in class gov.nih.mipav.model.structures.ModelLUT
FLow1(int, int, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
FLowLK(int, int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
FLT_EPSILON - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
fltFmt - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
fltFmt - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
FLUID - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
fluor - Variable in class gov.nih.mipav.model.file.FileInfoCZI
fluor - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
flush() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Sends all byte buffers of the outgoing buffer vector out the port. see DICOM PDUService.sendBinary and DICOMSocket
flush() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
flush() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
flush() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Writes all buffered data to the file or resource.
flush(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Sends specified number of bytes out the port. see DICOM PDUService.sendBinary and DICOMSocket
flush(DICOM_Comms, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink: Send the data out the connection (pdu).
flushRecentSamples() - Method in class gov.nih.mipav.view.LineMeter: removes the samples from the buffer and transfers them to the history buffer, and resets the recent history to capture new samples.
flushTriangles() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: When all edges have infinite weight, no further edge collapses are allowed.
flushVertices() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: When all edges have infinite weight, no further edge collapses are allowed.
Flv - gov.nih.mipav.model.file.MetadataExtractor.FileType
FLY_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Fly mode of the camera manually snapshooting.
FLY_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Fly through viewing mode.
flyBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Fly behavior reference.
FlyBehavior - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: This behavior is supposed to emulate a pilot directing an aircraft.
FlyBehavior(JPanelView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehavior: Constructs new behavior and initializes wake up events.
FlyBehaviorRenderer - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: This behavior is supposed to emulate a pilot directing an aircraft.
FlyBehaviorRenderer(JPanelView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehaviorRenderer: Constructs new behavior and initializes wake up events.
flyButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Raido Button group.
flyButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Fly behaviro radio button.
FlyPathAnnotateList - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Container which stores annotations which include the following: - point position and normal - branch and location along branch when point annotated - geometry and appearance - description.
FlyPathAnnotateList() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Constructor.
FlyPathAnnotateList_WM - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Container which stores annotations which include the following: - point position and normal - camera location, view up and view direction, branch and location along branch when point annotated - geometry and appearance - description.
FlyPathAnnotateList_WM() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Constructor.
FlyPathAnnotateList_WM.Item - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Single annotation item.
FlyPathAnnotateList.Item - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Single annotation item.
FlyPathBehavior - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Behavior which allows for flying down a specified path and looking around.
FlyPathBehavior(FlyPathGraphCurve, FlyPathAnnotateList, TransformGroup, TransformGroup, TransformGroup, FlythruRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Setup to fly along the specified path and look around.
FlyPathBehavior_WM - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Behavior which allows for flying down a specified path and looking around.
FlyPathBehavior_WM(FlyPathGraphCurve, FlyPathAnnotateList_WM, FlyThroughRender) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Setup to fly along the specified path and look around.
FlyPathBehavior_WM.BranchState - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Branch information.
FlyPathBehavior_WM.Callback - Interface in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Instances which want to be notified of updates to this behavior should implement this interface by providing the viewChanged method implementation.
FlyPathBehavior.BranchState - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: DOCUMENT ME!
FlyPathBehavior.Callback - Interface in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Instances which want to be notified of updates to this behavior should implement this interface by providing the viewChanged method implementation.
FlyPathBehavior.StandardKey - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Class used to send Standard key events to the canvas.
FlyPathGraph - Class in gov.nih.mipav.view.renderer.flythroughview: Basic graph structure which identifies relationship between nodes by their indexes.
FlyPathGraph() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Constructor.
FlyPathGraph(FlyPathGraph) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Copy constructor.
FlyPathGraphCurve - Class in gov.nih.mipav.view.renderer.flythroughview: This class is an implementation of a bidirectional graph of nodes where each node is a curve segment used to define branched paths.
FlyPathGraphCurve() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Construct and empty list of curves.
FlyPathGraphCurve(FlyPathGraphSamples, float, int) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Create a new graph with the same structure as this graph but with each node having a BSpline approximation for each of the points (and boundary distances) for each node.
FlyPathGraphCurve(Vector3f[], int, int) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Create a new graph with the same structure as this graph but with each node having a BSpline approximation for each of the points (and boundary distances) for each node.
FlyPathGraphSamples - Class in gov.nih.mipav.view.renderer.flythroughview: Extension of the FlyPathGraph class which allows for the storage of the samples used to generate the individual curves where curves are the nodes of the graph.
FlyPathGraphSamples() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Constructor.
flyText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: User message explain how the mouse moves in fly mode.
FlyThroughRender - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview
FlyThroughRender(GLCanvas, VolumeTriPlanarInterface, Animator, VolumeImage, VolumeImage, Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Construct the FlyThroughRenderer.
FlyThroughRender.MouseWheel - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Mouse middle button wheel roller event handler.
FlyThroughRender.RightMouse - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: RightMouse press event handler.
FlyThroughRender.RightMouseDragged - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Right mouse button press down and drag event handler.
FlyThroughRender.SetupOptions - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview
FlyThroughRenderInterface - Interface in gov.nih.mipav.view.renderer.flythroughview: Interface between the graphics-independent Fly-through user-interface and the graphics-dependent Fly-through renderers.
flythruButtonLoadImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
flythruButtonLoadImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Load image button.
flythruControl - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Fly through setup control panel.
flythruControl - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Flythough setup panel:
flythruGeodesic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
flythruLabelFileName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
flythruLabelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Image file name label.
flythruMoveControl - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Fly through movement control panel.
flythruMoveControl - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Flythough Move panel:
flythruMovePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: View panel contains the fly thru control panel.
flythruOptions - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Fly through options.
flythruPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Fly through panel.
flythruRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: FlythruRender reference.
flythruRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reference to fly through renderer.
FlythruRender - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Virtual colonoscopy viewer.
FlythruRender(ModelImage, GraphicsConfiguration, ViewJFrameVolumeView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: View which renders virtual endoscopy fly through of a binarized volume.
FlythruRender.MouseRotateExt - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Extend the MouseRotate class so that we can override the processMouseEvent method to ignore any events which occur while the shift key is down.
FlythruRender.MouseWheel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Mouse middle button wheel roller event handler.
FlythruRender.RightMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: RightMouse press event handler.
FlythruRender.RightMouseDragged - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Right mouse button press down and drag event handler.
FlythruRender.SetupOptions - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: DOCUMENT ME!
flythruSurfaceButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Surface load button.
flythruTabVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
flyThruToolbar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Flythru toolbar.
fMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Maximum voxel resolution of X, Y, Z.
FMAX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
FMAX(int, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
fMaxX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Voxel resolution in the X direction.
fMaxY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Voxel resolution in the Y direction.
fMaxZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Voxel resolution in the Z direction.
fMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
fmodf(double, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
fMRIBlindDeconvolution - Class in gov.nih.mipav.model.algorithms
fMRIBlindDeconvolution() - Constructor for class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
fMRIBlindDeconvolution.ConvAndLinear - Class in gov.nih.mipav.model.algorithms
fMRIBlindDeconvolution.DiscretInteg - Class in gov.nih.mipav.model.algorithms
fMRIBlindDeconvolution.Tracker - Class in gov.nih.mipav.model.algorithms
fmriStatusIndication - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
fmriStatusIndication - Variable in class gov.nih.mipav.model.file.FilePARREC
fmriStatusIndicationIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
fmriStatusIndicationPos - Variable in class gov.nih.mipav.model.file.FilePARREC
fn - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fn - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
FN4 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
FN8 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fName - Variable in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
fName - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
fName - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
fnorm - Variable in class gov.nih.mipav.model.algorithms.Lmmin: norm of the residue vector fvec
fnul - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
fnul - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
fNumber - Variable in class gov.nih.mipav.model.file.FileSVS
fNumber - Variable in class gov.nih.mipav.model.file.FileTiff
FNumber - Variable in class gov.nih.mipav.model.file.FileInfoBase
FNumberBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
FNumberTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
FNVAL(double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
fnvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: false negative volume fraction.
fnvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: false negative volume fraction.
focal_length_in_35mm_shake - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focal_length_in_35mm_true - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focalLength - Variable in class gov.nih.mipav.model.file.FileInfoBase
focalLength - Variable in class gov.nih.mipav.model.file.FileSVS
focalLength - Variable in class gov.nih.mipav.model.file.FileTiff
FocalLength() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength
focalLength35 - Variable in class gov.nih.mipav.model.file.FileInfoBase
focalLength35Blurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focalLength35True - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focalLengthBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focalLengthTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
focalPlaneResolutionUnit - Variable in class gov.nih.mipav.model.file.FileSVS
focalPlaneResolutionUnit - Variable in class gov.nih.mipav.model.file.FileTiff
focalPlaneXResolution - Variable in class gov.nih.mipav.model.file.FileSVS
focalPlaneXResolution - Variable in class gov.nih.mipav.model.file.FileTiff
focalPlaneYResolution - Variable in class gov.nih.mipav.model.file.FileSVS
focalPlaneYResolution - Variable in class gov.nih.mipav.model.file.FileTiff
focalRatio - Variable in class gov.nih.mipav.model.file.FileInfoFits
focusCalibrated - Variable in class gov.nih.mipav.model.file.FileInfoZVI
focusDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
focusGained(FocusEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Do nothing.
focusGained(FocusEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Unchanged.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.components.JPanelSigmas: Do nothing.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: focus gained
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Unchanged.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: focus gained.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Focus Events:
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Unchanged.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: focus gained
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Unchanged.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Unchanged.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: focus gained.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Currently unused.
focusGained(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Currently unused.
focusLost(FocusEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Do nothing.
focusLost(FocusEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Unchanged.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.components.JPanelSigmas: When the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: focus lost
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Unchanged.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: focusLost - when the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: When the user clicks the mouse out of a text field, resets the necessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: focusLost - when the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: When the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: When the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: When the user clicks the mouse out of a text field, resets the necessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: When the user clicks the mouse out of a text field, resets the necessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: focusLost - when the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: When the user clicks the mouse out of a text field, resets the necessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Test the seed value and if appropriate, sets it.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: When the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: when focus is lost the source is assumed to be a JTextField, and it sets the sample period.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

If focus is lost from either threshold field (lower/upper), update the new value on the LUT.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Unchanged.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: focus lost
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: When the user clicks the mouse out of a text field, resets the neccessary variables.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Unchanged.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: when focus is lost the source is assumed to be a JTextField, and it sets the sample period.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Currently unused.
focusLost(FocusEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Currently unused.
focusPosition - Variable in class gov.nih.mipav.model.file.FileInfoCZI
focusPosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
focusPosition - Variable in class gov.nih.mipav.model.file.FileInfoZVI
fOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
foldover - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: par/rec PreparationDirection
foldover - Variable in class gov.nih.mipav.model.file.FilePARREC
foldOverBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
foldOverLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
followBatchBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
followBatchWithIncremental - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
followBatchWithIncremental - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
followingScroll - Variable in class gov.nih.mipav.view.dialogs.JDialogText: DOCUMENT ME!
followVOISelectionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
font - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
font10 - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 10 point, plain, serif font.
font10 - Static variable in class gov.nih.mipav.view.MipavUtil: A 10 point, plain, serif font.
font10 - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
font12 - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 12 point, plain, serif font.
font12 - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
font12 - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, plain, serif font.
font12 - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
font12 - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
font12 - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
font12 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
font12 - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
font12B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 12 point, bold, serif font.
font12B - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
font12B - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
font12B - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
font12B - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, bold, serif font.
font12B - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
font12B - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes: DOCUMENT ME!
font12B - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
font12B - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
font12I - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 12 point, italic, serif font.
font12I - Static variable in class gov.nih.mipav.view.MipavUtil: A 12 point, italic, serif font.
font13 - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, plain, serif font.
font13B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 13 point, bold, serif font.
font13B - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, bold, serif font.
font13I - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, italic, serif font.
font14 - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 14 point, plain, serif font.
font14 - Static variable in class gov.nih.mipav.view.MipavUtil: A 14 point, plain, serif font.
font14B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 14 point, bold, serif font.
font14B - Static variable in class gov.nih.mipav.view.MipavUtil: A 14 point, bold, serif font.
font14I - Static variable in class gov.nih.mipav.view.MipavUtil: A 14 point, italic, serif font.
font16B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 16 point, bold, serif font.
font16B - Static variable in class gov.nih.mipav.view.MipavUtil: A 16 point, bold, serif font.
font18B - Static variable in class gov.nih.mipav.view.components.WidgetFactory: A 18 point, bold, serif font.
font18B - Static variable in class gov.nih.mipav.view.MipavUtil: A 18 point, bold, serif font.
FontBoxRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMipavOptions.FontBoxRenderer: Creates a new FontBoxRenderer object.
fontButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
fontChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
fontDescriptors - Variable in class gov.nih.mipav.model.structures.VOIText: The descriptors for the font which start at PLAIN and are additive (PLAIN + BOLD = bold) (BOLD+ITALIC = bold and italic) etc.
fontDescriptors - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: descriptors for font (BOLD, PLAIN, ITALIC).
FONTMETRIC_IMG - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
FONTMETRIC_IMG - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters
fontName - Static variable in class gov.nih.mipav.model.file.FileLIFF
fontName - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: name of the font
fontName - Variable in class gov.nih.mipav.model.structures.VOIText: The name (or type) of the font.
fontName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: name/style of the font.
fontNames - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
FontProvider() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider
fontsize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
fontSize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
fontSize - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: size of the font
fontSize - Variable in class gov.nih.mipav.model.structures.VOIText: The size of the font (half-sizes not allowed...int).
fontSize - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: size of font (int).
fontSizeField - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: textfield for font size (int only).
fontSizeField - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
fontStyle - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: style of the font (bold/italic etc)
fontTypeBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: combobox to hold the names of all available fonts.
footprint - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
for_lu - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.mem_usage_t
FOR_READING - gov.nih.mipav.view.GetPath.Purpose: File will be used only for reading.
FOR_WRITING - gov.nih.mipav.view.GetPath.Purpose: File will be used for writing, and could be used for reading.
force_orientations - Variable in class gov.nih.mipav.model.algorithms.SIFT
force_orientations - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
force_rgb - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters
forceAlgorithmInPlace - Variable in class gov.nih.mipav.view.ViewUserInterface: boolean to force the algorithm to replace the image rather than opening a new frame
forceDecimal - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: DOCUMENT ME!
ForceExt(String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Forces an extension onto a file name.
forcePadding - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Flag to force the padding of blank images to the end of images.
forceQuiet - Static variable in class gov.nih.mipav.view.MipavUtil
forceResample - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Boolean flag to do resample images.
forceResample - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Boolean flag to do resample images.
forceRGB - Variable in class gov.nih.mipav.model.file.FileJPEG2000
forEach(boolean, int, int, int, int, ContourPlot.PixelManipulator<? super P, T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified manipulator to every pixel in the specified area of this image.
forEach(boolean, int, int, int, int, Consumer<? super P>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified action to every pixel in the specified area of this image.
forEach(boolean, ContourPlot.PixelManipulator<? super P, T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified manipulator to every pixel of this image.
forEach(boolean, Consumer<? super P>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Performs the specified action on each of the pixels of this image.
forEach(int, int, int, int, ContourPlot.PixelManipulator<? super P, T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified manipulator to every pixel in the specified area of this image.
forEach(int, int, int, int, Consumer<? super P>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified action to every pixel in the specified area of this image.
forEach(ContourPlot.PixelConvertingSpliterator.PixelConverter<? super P, T>, boolean, int, int, int, int, Consumer<? super T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified action to every pixel in the specified area of this image.
forEach(ContourPlot.PixelConvertingSpliterator.PixelConverter<? super P, T>, boolean, Consumer<? super T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified action to every pixel of this image.
forEach(ContourPlot.PixelManipulator<? super P, T>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Applies the specified manipulator to every pixel of this image.
forEach(Consumer<? super P>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Performs the specified action on each of the pixels of this image.
forEach_defaultimpl(Consumer<? super P>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Default implementation of Iterable.forEach(Consumer)
only for performance test purposes as it is slower than the ContourPlot.ImgBase.forEach(Consumer) implementation.
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
forEachRemaining(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
forEachRemaining(Consumer<? super T>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
FOREGROUND - Static variable in class gov.nih.mipav.view.ColorIcon
Forest() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest
ForestClassification() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
ForestProbability() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
ForestRegression() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
ForestSurvival() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
forever - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.PlayMouse: DOCUMENT ME!
forever - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.PlayMouse: DOCUMENT ME!
forever - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse: DOCUMENT ME!
forImgRev - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 190 foreign image revision.
format - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
format - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
format - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
format_message(libjpeg.jpeg_decompress_struct, String[]) - Method in class gov.nih.mipav.model.file.libjpeg
formatCFAPattern(int[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
formatDoubleAsString(double, int, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
formatFixed1616(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatFixed1616(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatFixed1616(Integer) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatFixed1616(Long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatHex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatHex(long, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatHex(Integer, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatHex(Long, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
formatTable(int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Ensures the table is drawn in the way specified by the dimensions parameters and the selected sequence.
formattedLoad(StringBuilder, int, int, CLFFTPlan.CLFFTDataFormat) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
formattedStore(StringBuilder, int, int, CLFFTPlan.CLFFTDataFormat) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
formatTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
formFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
FormFullA(int, int[], double[][], int[][], int[][]) - Static method in class gov.nih.mipav.model.structures.jama.SuperLU
formk(int, int, int[], int, int, int[], int, boolean, double[][], double[][], int, double[][], double[][], double[][], double, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
formt(int, double[][], double[][], double[][], int, double, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
FormTrait(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.FormTrait
FORTFL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
forward - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
Forward - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection
Forward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.Forward: Creates a new Forward object.
Forward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.Forward: Creates a new Forward object.
FORWARD - gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: forward FFT
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Forward FFT
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Forward FFT
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
FORWARD - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Forward FFT
FORWARD - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
FORWARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: FFT will run in forward direction, producing frequency domain image
forward_gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the gradient with forward differences (see [2] for details)
FORWARD_POINTS - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
FORWARD1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
forward1D(double[]) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
forward1D(int, double[][]) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
FORWARD2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
forward2D(int, int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
forwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
forwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
ForwardDifference - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
forwardFFT - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: User selects to indicate forward FFT processing should occur, resulting in frequency image
forwardpoly(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
found - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
foundEOF - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
foundEOF - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
foundEOF - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
foundEOF - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
foundEOF - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
foundEOHeader - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
foundSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
foundTag43314 - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
foundTag43314 - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
four - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
FOUR - Variable in class gov.nih.mipav.model.algorithms.CVODES
fourButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
fourButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
fourD - Variable in class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Radio button indicating that the image should be masked in 4D
FourD - gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode
fourDimEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
FOURTH - Variable in class gov.nih.mipav.model.algorithms.CVODES
fouru - Variable in class gov.nih.mipav.model.algorithms.ODE
fouru - Variable in class gov.nih.mipav.model.algorithms.ODEEP
fov - Variable in class gov.nih.mipav.model.file.FileInfoCOR: DOCUMENT ME!
fov - Variable in class gov.nih.mipav.model.file.FileInfoMGH
fov - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
FOVColumn - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
FOVRow - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
FOVX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 34.
FOVY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 38.
fp - Variable in class gov.nih.mipav.model.algorithms.curfit
FP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
FP2Image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: DOCUMENT ME!
FP2Image - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
fparam - Variable in class gov.nih.mipav.model.algorithms.NESolve
fpback(double[][], double[], int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.curfit
fpbspl(double[], int, int, double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.curev
fpbspl(double[], int, int, double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.curfit
fpbspl(double[], int, int, double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.splev
fpchec(double[], int, double[], int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.curfit
fpconv(double[], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
fpcurf(int, double[], double[], double[], int, double, double, int, double, int, double, int, int, int, int[], double[], double[], double[], double[], double[], double[][], double[][], double[][], double[][], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.curfit
fpcuro(double, double, double, double, double[], int[]) - Method in class gov.nih.mipav.model.algorithms.sproot
fpdisc(double[], int, int, double[][], int) - Method in class gov.nih.mipav.model.algorithms.curfit
fpgivs(double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.curfit
FPGM - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
fpknot(double[], int, double[], int[], double[], int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.curfit
fprati(double[], double[], double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.curfit
fprota(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.curfit
fpsconv(double[], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
fpser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
fpsSlider - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
fpsSlider - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
FPtP(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fpvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: false positive volume fraction.
fpvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: false positive volume fraction.
fQ(double, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
fQB(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
fQBTestMode(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
fQTestMode(double, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
frac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fracEcho - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 642 Fractional echo-effective TE flag.
fractalDimensionBoxCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
fractalDimensionBoxCountDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
fractalDimensionEuclideanDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
fractalDimensionEuclideanDistanceDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
fractionalEffectiveEcho - Variable in class gov.nih.mipav.model.file.FileGESigna4X
fractionalEffectiveEcho - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
frame - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature
frame - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Reference to the Query/Retrieve GUI object.
frame - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: GUI frame where all DICOM messages are displayed.
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
frame - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Pointer back to frame that called this.
frame - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Frame for the GUI in which the form is presented
frame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Frame where the plotted surface is displayed.
frame - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
frame - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
frame - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: frame - frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: frame - frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: frame - frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Frame where the component image is displayed.
frame - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages.ImageCellRenderer: DOCUMENT ME!
frame(libdt.Mat, int) - Method in class gov.nih.mipav.model.algorithms.libdt
frame_center - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < flag if vbuf_zm is used.
frame_patches - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < center frame of the video buffer (reference to vbuf).
frame_size - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
frameAnimate - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
frameB - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: DOCUMENT ME!
frameB - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: DOCUMENT ME!
frameBorder - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
frameBorder - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
frameBorder - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
frameBorderCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
frameButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
frameColocalize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
frameControls - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Controls having color and opacity.
frameFollowsSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
frameGraphVOI - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
frameGroupImages - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
frameGroupImagesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
frameGroupNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
frameHeight - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
frameHeight - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
frameHistogram - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
frameInsets - Variable in class gov.nih.mipav.view.ViewJFrameMessage: DOCUMENT ME!
frameInsets - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
frameList - Variable in class gov.nih.mipav.model.structures.ModelImage: List of frames where this image is displayed.
frameLocation - Variable in class gov.nih.mipav.view.ViewUserInterface: Location of new image frames.
frameNumber - Variable in class gov.nih.mipav.view.VOIFrameNode: The slice number of the VOI component
frameRateField - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
frameRefNum - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
frames - Variable in class gov.nih.mipav.model.file.FileTiff
framesarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
framesarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
framesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
framesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
frameStartLocation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
framesToCapture - Variable in class gov.nih.mipav.model.file.FileAvi
framesToSkip - Variable in class gov.nih.mipav.model.file.FileAvi
frameWidth - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: frame information.
frameWidth - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Frame information.
framingMethod - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
framingMethodIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
frapAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
fraud_pair_item(String, int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.fraud_pair_item
fraud_pair_list - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
FREE - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
FREE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
free_adjncy - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
free_adjwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
free_discrete_wavelet(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
free_nodes - Static variable in class gov.nih.mipav.model.algorithms.KDTree
free_pool(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg
free_resnode(KDTree.res_node) - Method in class gov.nih.mipav.model.algorithms.KDTree
free_sbtree(GenericPolygonClipper.sb_tree[]) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
free_vsize - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
free_vwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
free_xadj - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
freeBlockLoc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
FreeBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
FreeBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
FreeCtrl(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
freeMemory - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
freeRAList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
freeRangeButton - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
freeRangeColocIntensity1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
freeRangeColocIntensity1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
freeRangeColocIntensity2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
freeRangeColocIntensity2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
freeRangeColocSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
freeRangeColocSize - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
freeRangeMode - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
freeRangeMode - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
freeRangeRThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: The linear correlation coefficients for all pixels with values either below color1 for buffer or below color2 for secondBuffer.
freeRangeRThreshold - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
freeRegion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
FREESURFER - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: FreeSurfer ascii files (*.asc).
freev(int, int[], int[], int[], int[], int[], int[], boolean[], boolean, boolean, int, int) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
FreeWorkSpace(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
FREQ_DEFAULT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: default frequency value for blurring frequency, at 0.2.
freq_dim - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Bits 0 and 1 of the dim_info character contain the freq_dim information. 0 for "No frequency encoding direction is present", 1 for "Frequency encoding in the x direction", 2 for "Frequency encoding in the y direction", and 3 for "Frequency encoding in the z direction".
freq_dim - Variable in class gov.nih.mipav.model.file.FileNIFTI: Bits 0 and 1 of the dim_info character contain the freq_dim information. 0 for "No frequency encoding direction is present", 1 for "Frequency encoding in the x direction", 2 for "Frequency encoding in the y direction", and 3 for "Frequency encoding in the z direction".
FREQ_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: minimum frequency value for blurring frequency, at 0.0.
freq1 - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
freq1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
freq1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
freq1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
freq2 - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
freq2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
freq2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
freqDir - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 742 Frequency Direction.
freqU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Variables used in Gabor filter.
freqU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Variables used in Gabor filter.
freqU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
freqU - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: 5 variables used in Gabor transform. - should be removed - redesigned
freqU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
freqU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
frequency - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: FrequencyFilter's low-pass cut-off frequency.
FREQUENCY - gov.nih.mipav.model.file.FileInfoBase.UnitType
frequencyDoubled - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser
frequencyFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
FrequencyFilterAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
FrequencyFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
FrequencyFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
FrequencyFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
FrequencyFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
FrequencyFilterColorAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
FrequencyFilterColorAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
FrequencyMHz - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
freqV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
freqz2(double[][], double[][], double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
fresnl(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
FRESNL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
fretAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
FRETImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: private ModelImage FP1Image; // FP1 taken with FP1 filter.
FRETImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: private ModelImage donorImage; // image taken with donor filter.
FRETImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
FRETImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
FREUDENSTEIN_AND_ROTH - Variable in class gov.nih.mipav.model.algorithms.Lmmin
FREUDENSTEIN_AND_ROTH - Variable in class gov.nih.mipav.model.algorithms.LsqFit
FREUDENSTEIN_AND_ROTH - Variable in class gov.nih.mipav.model.algorithms.NESolve
FREUDENSTEIN_AND_ROTH - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
FreudensteinAndRothFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothFunction
FreudensteinAndRothJacobianFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothJacobianFunction
frexp(double, int[]) - Method in class gov.nih.mipav.model.algorithms.SVM
frft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
fro_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
FRO_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
fro_mu_partial_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
FRO_MU_PARTIAL_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
fromAStoVisibleString() - Method in class gov.nih.mipav.model.file.FileDicomTag: From age string to something that makes more sense. ages are DICOM as nnnT.
fromByte(byte) - Static method in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
fromConverterAndConsumer(ContourPlot.PixelConvertingSpliterator.PixelConverter<P, T>, Consumer<T>) - Static method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelManipulator: Creates a PixelManipulator from a ContourPlot.PixelConvertingSpliterator.PixelConverter and corresponding Consumer (action).
fromDAtoVisibleString() - Method in class gov.nih.mipav.model.file.FileDicomTag: parses the DICOM v3 format tag to make a mm/dd/yyyy formatted date.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Reads a PCA object from a binary file.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Read point info from a file.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Reads the class data form disk.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Reads a shape from a file.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Reads the class info from file.
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Reads a matrix from disk in binary format (from the current position of the file pointer), as written from ToFile().
FromFile(DataInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Reads a vector from disk in binary format.
FromFile(DataInputStream, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Reads an object from disk.
FromFile(DataInputStream, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: Not used
FromFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMObject
FromFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Reads a matrix from disk in binary format, as written from ToFile().
FromFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Reads a vector from disk in binary format.
fromFloat(float) - Static method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Convert a 32-bit float to a 'byte' that represents an unsigned 8-bit integer (uint8).
fromFunctions(Supplier<T>, BiConsumer<P, T>, BiConsumer<T, P>) - Static method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: Creates a new PixelConverter from the specified functions.
fromInt(int) - Static method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Convert a 32-bit integer (int32) to a 'byte' that represents an unsigned 8-bit integer (uint8).
fromLPS(ModelImage, int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Returns the axisOrder and axisFlip mapping of the input image from LPS coordinates.
fromNumericValue(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType: Each pixel is an R,G,B triple followed by an alpha sample.
fromOAR3D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: DOCUMENT ME!
fromOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The transformation matrix from the origin of the input image.
fromOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The transformation matrix from the origin of the input image.
fromOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: The transformation matrix from the origin of the input image.
fromOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: The transformation matrix from the origin of the input image.
fromOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: The transformation matrix from the origin of the input image.
fromPanasonicString(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age: Parses an age object from the string format used by Panasonic cameras: 0031:07:15 00:00:00
fromPatientOrientationToVisibleString() - Method in class gov.nih.mipav.model.file.FileDicomTag: DOCUMENT ME!
fromPatientSexToVisibleString() - Method in class gov.nih.mipav.model.file.FileDicomTag: Converts a DICOM patient sex tag (eg, "M") into a more understandable value (eg, "Male").
fromStream(InputStream) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.StringUtil
fromString(String) - Static method in enum gov.nih.mipav.view.Preferences.LogLevel
fromTiffFormatCode(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
fromTMtoVisibleString() - Method in class gov.nih.mipav.model.file.FileDicomTag: Takes a DICOM tag with a TM value representation and returns it in the format HH:MM:SS.frac, or as much as is available to convert (ie, HH:MM could be all that is currently stored).
FromTripletSparseMatrix(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
FromTripletSparseMatrix(CeresSolver.TripletSparseMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
FromTripletSparseMatrixTransposed(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
fromVisibleStringToAS(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: Converts the given readable string to a DICOM compliant age string.
fromVisibleStringToDA(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: Converts the given string into a DICOM-legal value for a DA value-representation (VR) tag. places a date (yyyymmdd) into value that is in either yyyymmdd (DICOM v3) or yyyy.mm.dd (< DICOM v3) or mm/dd/yyyy format.
fromVisibleStringToDS(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: Takes the input string and forms a DICOM compliant decimal string out of it.
fromVisibleStringToDT(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: setVisibleStringToDT.
fromVisibleStringToPatientOrientation(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: DOCUMENT ME!
fromVisibleStringToPatientSex(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: Converts patient sex (eg, "Male") into a valid DICOM value (eg, "M").
fromVisibleStringToPN(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: Converts a DICOM person's name ("PN") tag into a more understandable value.
fromVisibleStringToTM(String) - Method in class gov.nih.mipav.model.file.FileDicomTag: setVisibleStringToTM.
front - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
front - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
front - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
FRONT - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
frontBottomLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontBottomLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontBottomRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontBottomRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
FrontEdge - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
FrontEdge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
FrontEdge(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
frontFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
frontInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
frontInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
frontTopLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontTopLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontTopRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
frontTopRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
fRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
fRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
fs - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
fs(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
fS1(int, double, CVODES.NVector, CVODES.NVector, int, CVODES.NVector, CVODES.NVector, CVODES.UserData, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
fS1TestMode(int, double, CVODES.NVector, CVODES.NVector, int, CVODES.NVector, CVODES.NVector, CVODES.UserData, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
fSample_mouseDragged - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: sample rate when mouse is dragged.
fSample_mouseReleased - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: sample rate when mouse is released.
fsave - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
fserrors - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
fserrors - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
fslButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: Radio button to save gradBval text file in FSL format
fsmall_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
fsqkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
fsqkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
fst_row - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
fStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.fStop: Creates a new fStop object.
fStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.fStop: Creates a new fStop object.
fsum - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
fsum - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
fsumsq(double, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
fsumsq(DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
ft - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
ftab - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
FTail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
FTB_LENGTH - Static variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream: Length of File Type Box
fTestMode(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ODE
fTestMode(double, CVODES.NVector, CVODES.NVector, CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES: f routine.
fTestMode(DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.ODEEP
ftol - Variable in class gov.nih.mipav.model.algorithms.Lmmin: ftol is a nonnegative input variable.
ftol(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
ftrue - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceTest
fudgeFactor - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Frame adjustment to keep the frame from being just small enough for the ScrollPane to display the scroll bars.
FujifilmMakernoteDescriptor(MetadataExtractor.FujifilmMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
FujifilmMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory
FUL - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
full - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
fullAnalysisMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fullAnalysisMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fullAnalysisMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fullAnalysisMode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: If true this algorithm skips all subsample and goes directly to the level 1 optimization.
fullDatesBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
fullGtU(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
fullRangeRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
fullsize_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, byte[][], int, byte[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
fullsize_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[][], int, short[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
FULLSIZE_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
fun(double[]) - Method in interface gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Function
fun(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
fun(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
fun_obj - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron
fun2Icon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun2PrintIcon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun3Icon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun3PrintIcon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun4Icon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun4PrintIcon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun5Icon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
fun5PrintIcon - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
func - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
func - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
func - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
FUNC - Variable in class gov.nih.mipav.model.algorithms.CVODES
FUNC_BN_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BN_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_BT_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_COR_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_COR_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_COR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_COR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_CT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_FIM_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: funcType for anatType == false.
FUNC_FIM_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: 1 value.
FUNC_FT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_FT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_FT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_GT_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_GT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_GT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_GT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_PT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_PT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_PT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_THR_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: 6 funcType of functional data have default scaling for byte data.
FUNC_THR_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: Unfortunately, the func type codes overlap for Func and Anat datasets.
FUNC_THR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_THR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_TT_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_TT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_TT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_TT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
FUNC_ZT_SCALE_BYTE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_ZT_SCALE_SHORT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_ZT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
FUNC_ZT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
funcC(double, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: This routine iterates to find the solution to the first moment equation for the Generalized Rice distribution.
funcEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar containing the total number of function evaluations done inside this routine.
funcEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar containing the total number of function evaluations done inside this routine.
funcFileName - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The file name of the transfer function data file.
FUNCT - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Transfer Function Files (*.fun).
funcTag - Static variable in class gov.nih.mipav.model.file.FileHistoLUT: Tag marking the beginning of a transfer function file.
function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
Function - Interface in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Function(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointAdjacencyFunction
Function(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
Function(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NodeAdjacencyFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RefineFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
Function(OctNode, OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TerminatingNodeAdjacencyFunction
function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientChecker
function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
function_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
function_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions
function_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
function_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
function_tolerance_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradient
functionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The cost of the function at the best minimum.
functionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The cost of the function at the best minimum.
functionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: The cost of the function at the best minimum.
functionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: The cost of the function at the best minimum.
functionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
functionCode - Variable in class gov.nih.mipav.model.algorithms.Gamma: In lgamma and cgamma calculate gamma(x) for functionCode = 1 and calulate the ln(gamma(x)) for functionCode = 0
FunctionData - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
FunctionData(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
functionFit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
functionFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
functionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
functionIndex - Variable in class gov.nih.mipav.model.file.FileImageXML: Index of LUT function when reading xml header.
functionIndex - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
functionKeys - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
functionLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
functionPropPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
functions - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
FunctionSample() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample
FunctionSample(double, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample
FunctionSample(double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample
functionStrings - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
FunctionToleranceReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
functionType - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
functionType - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
functionType - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
functionVector - Variable in class gov.nih.mipav.model.file.FileImageXML: Vector to store the LUT functions when reading xml header.
functLineColorButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
functName - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EasyCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedCostFunction
functor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalCostFunction
functVisibleCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: the slope changes.
funcType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
funcType - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
funused1 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV uses this variable to define the X-axis origin.
funused1 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV uses this variable to define the X-axis origin.
funused2 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV uses this variable to define the Y-axis origin.
funused2 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV uses this variable to define the Y-axis origin.
funused3 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV uses this variable to define the Z-axis origin.
funused3 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV uses this variable to define the Z-axis origin.
fUpdate1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Factor used in controlling the input of the tangetial component of the surface evolution.
fuse(double[][][], double[][][], int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
fuseImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
fuseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Use serialVersionUID for interoperability.
FUZZ_FACTOR - Static variable in class gov.nih.mipav.model.algorithms.CVODES
fuzzMinAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
FUZZY_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
FUZZY_ONLY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
FuzzyC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
FuzzyC_ALL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
FuzzyC_class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
FuzzyC_class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
FuzzyC_class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
FuzzyC_class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
FuzzyC_GRE_LOW - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
FuzzyC_GRE_LOW - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
FuzzyC_GRE_LOW - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
fuzzyCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
fuzzyCMeanFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
fuzzyCMeanFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
fuzzyCMeanFilterCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
fuzzyCMeanImages - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
fuzzyCMeanPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
fuzzyImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
fuzzyMinAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
fuzzyOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
fuzzyOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
fuzzyOnly - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
fuzzyOnlyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
fuzzySlider - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
fuzzyThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
fuzzyThreshold - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Region grow parameters fuzzyConnectedness is not used if fuzzyThreshold is less than 0.
fuzzyTruncatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
fvc - Variable in class gov.nih.mipav.model.algorithms.NESolve
fvec - Variable in class gov.nih.mipav.model.algorithms.Lmmin: fvec is an output array of length m which contains the functions evaluated at the output x.
FWD_MIN(GenericPolygonClipper.edge_node[], int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
fwhm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Full width at half maximum of the autocorrelation.
fwhm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: full width at half maximum of the autocovariance.
fwhm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fwhm - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fwhm(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
fwhm(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
fwhmB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
fwhmFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fwhmG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
fwhmR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: DOCUMENT ME!
fwhmScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
fwht_normalize(int, int[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
fwht_sum_absolute_difference(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
fwht_sum_absolute_difference(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
fwht_transform(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
fwht_transform2D(int, int, int[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
fx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
fx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
fx - Variable in class gov.nih.mipav.model.algorithms.NelderMead.point_t
FX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
Fx2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
fXDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: x, y, z delta value.
Fxy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
fy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
fy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
FY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
Fy2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
fYDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: x, y, z delta value.
fz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
fz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
FZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
fZDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: x, y, z delta value.

G

g - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
g - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
g - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
g - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D array of length param containing the gradient of the objective at the current point.
g - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D array of length param containing the gradient of the objective at the current point.
g - Variable in class gov.nih.mipav.model.algorithms.ODE
g - Variable in class gov.nih.mipav.model.algorithms.ODEEP
g - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
g - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
g() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
g(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
g(double, CVODES.NVector, double[], CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES
g(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
g(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
g(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
G - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
G - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
G - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
G() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
g_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
g_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
g_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the green value of this pixel at its current position.
G_bar - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
G_bar - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
g_lambda(double, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
g_mask_lut - Variable in class gov.nih.mipav.model.algorithms.libdt
g_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
g_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
g_rgbtable - Variable in class gov.nih.mipav.model.algorithms.libdt
G_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
G_SIZE - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
g_tol - Variable in class gov.nih.mipav.model.algorithms.LsqFit
G_Y_OFF - Variable in class gov.nih.mipav.model.file.libjpeg
g2d - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
g2d - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
GABOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
GABOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
GABOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
gaborAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaborAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaborAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaborFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaborFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
gaborFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaborFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaborFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: gabor filter.
gaborFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
gaborFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
gaborFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
gaborFilterCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaborImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaborImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
gaborPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
gageodilate_union_find(int[], int[], int[], int[][], int, int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
gain - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
gain - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
gain - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
gain - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector
gain - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
gainControl - Variable in class gov.nih.mipav.model.file.FileSVS
gainControl - Variable in class gov.nih.mipav.model.file.FileTiff
gainText - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
galerkin2D(int, int, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
galerkin3D(int, int, int, int, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
gam1(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
gAMA - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
gamln(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
gamln1(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
gamma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
gamma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
gamma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
gamma - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: half width at half maximum
gamma - Variable in class gov.nih.mipav.model.algorithms.Integration2
gamma - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
gamma - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
gamma - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
gamma - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
gamma - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
gamma - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
gamma - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
gamma - Variable in class gov.nih.mipav.model.file.FileInfoCZI
gamma - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
gamma - Variable in class gov.nih.mipav.view.ColorWheel: gamma correction
gamma - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: gamma correction *
gamma - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
gamma - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
gamma - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
gamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
gamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: gamma correction *
gamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
gamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
gamma - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: gamma correction *
gamma() - Method in class gov.nih.mipav.model.algorithms.Gamma: This code is a port of the FORTRAN routine GAMMA from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 49-50.
Gamma - Class in gov.nih.mipav.model.algorithms: This code calculates the gamma function of an input argument x.
Gamma() - Constructor for class gov.nih.mipav.model.algorithms.Gamma
Gamma(double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Gamma
Gamma(double, double, double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Gamma
Gamma(double, double, double, boolean, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Gamma
Gamma(double, double, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Gamma
Gamma(double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Gamma
GAMMA - Static variable in class gov.nih.mipav.model.algorithms.Gamma: Compute gamma function for real x, x is not equal to 0 or a negative integer
GAMMA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
GAMMA - Variable in class gov.nih.mipav.model.algorithms.NelderMead
GAMMA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
GAMMA(double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
gamma_beta(double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
gamma_expectation(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
gamma_expectation(double, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
gamma_expectation_log(double, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
gamma_fit(double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
gamma1 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
gamma2 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
gammaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
gammabeta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
gammabetabar - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
gammaHalflife - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
gammaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
Gammaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
gammaln(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
gammaln2(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
gammaPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
gammaPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
GammaRand(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
gammaSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
gammaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
gammaTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
gammaTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
gammaValue - Variable in class gov.nih.mipav.model.file.FileInfoZVI
gamrnd(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
gamrnd(double, double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
gap - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
gapArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: If planeGap is not -1, then gapArray contains the values at which zero filling gaps are present.
gapTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
garbage_collection(int, int, int, int, int[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
garrote - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
gatedFrameMode - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
gatedFrameModeIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
gatedStudyGeneral - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
gatherBoundedPoints(ArrayList<Integer>, ArrayList<Integer>, double, double, float, float, float, float[], float[], float[]) - Static method in class gov.nih.mipav.model.structures.VOI: Gathers the points that fall within the required bounds
gatherBytes(MetadataExtractor.SequentialReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
gatherBytes(MetadataExtractor.SequentialReader, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
gatherDependents(Class) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Gets the dependents of a given class, defined as those classes which exist solely in the pluginDir path and should be uninstalled.
gatherSubClassDependents(Class, int) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Attempts to go no further than third level.
gatingType - Variable in class gov.nih.mipav.model.file.FileGESigna4X
gatingType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
gatingType2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
gatingType2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
gatingTypeString - Variable in class gov.nih.mipav.model.file.FileGESigna4X
gattArray - Variable in class gov.nih.mipav.model.file.FileInfoMinc: DOCUMENT ME!
gauc(int[], double, double[], double, double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
gauc(int[], DoubleDouble, DoubleDouble[], DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
gaus(double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
GAUS - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
gauss(double) - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Gaussian evaluated at a point with given parameters
Gauss() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: make randomize gauss.
Gauss_filter() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Gauss_filter
GAUSS_INCREMENT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
gauss_ker2D() - Method in class gov.nih.mipav.model.algorithms.NLMeans_filt2D
GAUSS_LIMIT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
gauss_newton_step() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
gauss_newton_step_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
GAUSS_NUM_ELS - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
gauss_octave - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.GSS_filters
gauss_seidel2D(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
gauss_seidel3D(double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
Gauss1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss1CostFunction
Gauss1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
gauss1Fitting(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1Fitting
gauss1FittingCheck - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
gauss1FittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss1FittingCostFunction
Gauss1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Gauss2CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss2CostFunction
Gauss2Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
gauss2Fitting(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2Fitting
gauss2FittingCheck - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
gauss2FittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gauss2FittingCostFunction
gauss2FittingData - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
gauss2FittingObservations - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
Gauss2Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Gauss3CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Gauss3CostFunction
Gauss3Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Gauss3Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
gaussBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
gaussBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
gaussData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: DOCUMENT ME!
GaussData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Storage location of the Gaussian kernel.
GaussData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Storage location of the Gaussian kernel.
GaussData_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Storage location of the 2D Gaussian kernel.
GaussData_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
gaussDiffFilter(AlgorithmEmbeddedConfidenceEdgeDetection.BgImage, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
gaussFilter - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current octave height.
gaussFilterSigma - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current Gaussian filter
gaussFilterWidth - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current Gaussian filter std
gaussgen(double, int) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
gaussian(double[], double[], int, int, double, int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Convolution with a Gaussian
gaussian(double[], double[], int, int, double, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Convolution with a Gaussian
gaussian(double[], int, int, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: In-place Gaussian smoothing of an image
gaussian(double[], int, int, double, int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Convolution with a Gaussian
gaussian(double[], int, int, double, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Convolution with a Gaussian
Gaussian - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType
Gaussian - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess: Static 4x4 Gaussian kernel
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
GAUSSIAN - Variable in class gov.nih.mipav.model.algorithms.LsqFit
GAUSSIAN - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
GAUSSIAN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Used to indicate Gaussian distribution of noise.
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
GAUSSIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
GAUSSIAN_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
GAUSSIAN_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
GAUSSIAN_INVERSE_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
GAUSSIAN_PROBABILITY_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics: Also known as the normal probability function
GAUSSIAN_PROBABILITY_INTEGRAL - Static variable in class gov.nih.mipav.model.algorithms.Statistics
gaussian_pyramid(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
GAUSSIAN_SIGMA - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
GAUSSIAN_SIGMA - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
gaussian2nd2d(double[][], double[][], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
gaussian2nd3d(double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
gaussianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaussianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaussianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaussianangularfilter(double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
GaussianApproximation(double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
GaussianApproximation0(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
gaussianBlur25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: 2D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gaussianBlur3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: 3D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gaussianBlur4D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Calls gaussianBlur3D for each volume in the time series image.
gaussianBlurAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: DOCUMENT ME!
gaussianBlurSep25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
gaussianBlurSep25DSlices() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
gaussianBlurSep3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
gaussianBlurSep3D(CLContext, CLDevice, CLBuffer<FloatBuffer>, int, int, float[], int, int, int, int, int[]) - Static method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
gaussianBlurSepAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: DOCUMENT ME!
gaussianButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gaussianData - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: data storage buffer.
gaussianData - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: data storage buffer.
gaussianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaussianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaussianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaussianFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
gaussianFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
gaussianFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
gaussianFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
gaussianFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
gaussianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: gussian filter.
gaussianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
gaussianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
gaussianFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
GaussianFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.GaussianFunction
GaussianHistogramMatching(CDVector, CDVector, int, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Maps the distibution of v into an approximate Gaussian distribution.
gaussianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gaussianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gaussianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gaussianInverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
gaussianKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
gaussianKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
GaussianKernel - Class in gov.nih.mipav.model
GaussianKernel() - Constructor for class gov.nih.mipav.model.GaussianKernel
GaussianKernelFactory - Class in gov.nih.mipav.model
GaussianKernelFactory(float[]) - Constructor for class gov.nih.mipav.model.GaussianKernelFactory
gaussianLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
gaussianMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
gaussianMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
GaussianMixtureModelsIncompleteSamples - Class in gov.nih.mipav.model.algorithms: dirichletRnd ported from mixGaussRnd.m by Mo Chen Copyright (c) 2016, Mo Chen All rights reserved.
GaussianMixtureModelsIncompleteSamples() - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
GaussianMixtureModelsIncompleteSamples(int, int) - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
GaussianMixtureModelsIncompleteSamples.Background - Class in gov.nih.mipav.model.algorithms
GaussianMixtureModelsIncompleteSamples.GMM - Class in gov.nih.mipav.model.algorithms
GaussianOneDimKernel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
GaussianOneDimKernel() - Constructor for class gov.nih.mipav.model.algorithms.GaussianOneDimKernel: Creates a new GaussianOneDimKernel object.
gaussianProbabilityFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
gaussianProbabilityIntegral() - Method in class gov.nih.mipav.model.algorithms.Statistics: Formula found in Computation of Special Functions by Shanjie Zhang and Jianming Jin Chapter 16.3 Gaussian Probability Integral page 625.
gaussians - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
gaussians - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
gaussianScale - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Gaussian scale for structure tensor smoothing.
gaussianScale - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
gaussianScale - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
gaussianSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
gaussianSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
gaussianSmooth(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
gaussianSmooth3D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: DOCUMENT ME!
gaussianStdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Standard deviation of the gaussian used in determining the zero membership function from intensity differences
gaussianStdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
gaussianText - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
gaussj(double[], double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
GAUSSJ(int, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
gaussKernel - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
gaussMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
gaussPt(int[]) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Calculates the Gaussian function at a point.
gaussPt(int[]) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Calculates the Gaussian function at a point.
gaussRnd(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
gaussRnd(double[], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
gaussSecondStandardDeviationFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussSecondStandardDeviationFittingCostFunction
gaussStandardDeviationCheck - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
gaussStandardDeviationFitting(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFitting
gaussStandardDeviationFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.gaussStandardDeviationFittingCostFunction
gazeDecreaseButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
gazeIncrButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
GB - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
GB - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
gbc - Variable in class gov.nih.mipav.view.components.PanelManager: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: GridbagConstraints *
gbc - Static variable in class gov.nih.mipav.view.dialogs.GuiBuilder
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: grid bag constraints *
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
gbc - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: GridbagConstraints *
gbc - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
gbc - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
gbc - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
gbc - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
gbc_1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
gbc_2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
gbc_3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
gbc_4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
gbc_5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
gbc2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: grid bag constraints *
gbc2 - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
gbc2 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
gbc2 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
gbc2 - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
gbc3 - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: grid bag constraints *
gbConstraints - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
gbcTP - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
gbcTP - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
gbcTP - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
gbcTP - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
gbl - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: GridBagLayout *
gbl - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
gbl - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
gbl - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: GridBagLayout *
gbLayout - Static variable in class gov.nih.mipav.view.dialogs.GuiBuilder
gbLayout - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
gbLayout - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
gbLayout - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
GCD(long, long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational
gCenterString - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
gChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: If true filter the green channel.
gChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: the green channel.
gChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
gChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: when true, indicates whether to process the colour channel.
gChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
gChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: the green channel.
gcPt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the geometric center of the contour of a VOI.
gd - Static variable in class gov.nih.mipav.model.algorithms.Cephes
GD4 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
GD8 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
GDAL_METADATA - Static variable in class gov.nih.mipav.model.file.FileSVS
GDAL_METADATA - Static variable in class gov.nih.mipav.model.file.FileTiff
gdalMetadata - Variable in class gov.nih.mipav.model.file.FileSVS
gdalMetadata - Variable in class gov.nih.mipav.model.file.FileTiff
gdtr(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
GDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
gdtrc(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
GDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ge - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
ge - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
ge - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
ge - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
ge - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations
ge - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations2
ge - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations3
ge - Variable in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue
ge - Variable in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2
ge - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
ge - Variable in class gov.nih.mipav.model.structures.jama.SVD
ge(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is greater than or equals to another DoubleDouble value.
Ge(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise greater than or equal.
Ge(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Greater Than or Equal - compares a double and a vector.
Ge(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise greater than or equal.
Ge(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Greater Than or Equal - compares a vector and a vector.
GE - gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType
GE_GENESIS - Static variable in class gov.nih.mipav.model.file.FileUtility: GE Genesis 5X and LX. extension: .sig
GE_GENESIS_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type GE_GENESIS
GE_SIGNA4X - Static variable in class gov.nih.mipav.model.file.FileUtility: GE Signa 4.x.
GE_SIGNA4X_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type GE_SIGNA4X
ge2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
GEcolor - Static variable in class gov.nih.mipav.model.structures.ModelLUT
geGenesisEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
GEMV - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
GEN - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: General( *.gif; *.jpeg; *.jpg; *.pict; *.psd; *.tif; *.tiff).
GEN_ANAT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI typeString general anatomical.
GEN_FUNC_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI typeString general functional.
gen_regular_ai_s(double[], double[], double[], int, double, double, boolean) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
gen_regular_bloc_bold(double[], double[], double[], double[], double[], double[], int, double, double, boolean, double[], double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
gen_rnd_ai_s(double[], double[], double[], double, double, int, int, double, boolean, boolean, boolean, boolean, long, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
gen_rnd_bloc_bold(double[], double[], double[], double[], double[], double[], double, double, boolean, double[], int, int, double, boolean, boolean, boolean, double, int, int, boolean, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
gen_rnd_event_bold(double[], double[], double[], double[], double[], int, double, boolean, double[], int, double, double, double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
gen_rnd_i_s(double[], double[], int, double, int, double, double, boolean, long, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
genContour(int, int, Point, BitSet) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Static method that generates a boundary of a general object.
genContour(int, int, Point, BitSet) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Static method that generates a boundary of a general object.
genContour(short[], int, int, Point, short) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Static method that generates a boundary of a general object.
genContour(short[], int, int, Point, short) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Static method that generates a boundary of a general object.
genContour(ModelImage, int, int, Point) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Static method that generates a boundary of a binary object.
genContour(ModelImage, int, int, Point) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Static method that generates a boundary of a binary object.
genContour(BitSet, int, int, Point) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Static method that generates a boundary of a binary object.
genContour(BitSet, int, int, Point) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Static method that generates a boundary of a binary object.
GENERAL_MICROSCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality general microscopy.
GENERAL_MICROSCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality general microscopy.
generalData - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
generalImageData - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
generalImageData() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
generalInfoList - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
GeneralizedEigenvalue - Class in gov.nih.mipav.model.structures.jama: This file contains 1 user callable eigenvalue function and 2 user callable generalized eigenvalue functions.
GeneralizedEigenvalue() - Constructor for class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Creates a new GeneralizedEigenvalue object.
GeneralizedEigenvalue2 - Class in gov.nih.mipav.model.structures.jama
GeneralizedEigenvalue2() - Constructor for class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
GeneralizedInverse2 - Class in gov.nih.mipav.model.structures.jama
GeneralizedInverse2() - Constructor for class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
GeneralizedInverse2(double[][], int, int) - Constructor for class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
GeneralLight - Class in gov.nih.mipav.view.renderer.J3D: This class maintains an instance of a SoftwareLight and a (Java3D) Light where these instances are of the same type:
GeneralLight(int, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.GeneralLight: Constructor.
generalPanel - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
generalThresholdPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
generateAnonymousName() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: creates a string to use as a name out of the generic name, and the sequence.
generateAtlasImage() - Method in class gov.nih.mipav.view.ViewJFrameImage: Read the 3D atlas images directory, convert each 3D image to 2D slices based atlas.
generateBaseImage(ModelImage, double, double) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
generateBinaryImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Forms a solid (without holes) binary image from all VOIs in the image.
generateBinaryImage(boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Forms a binary image from VOIs.
generateBoundaryContours(VOIBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Convert VOI from one contour to two contours
generateBoundaryContours(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Convert VOI from one contour to two contours
generateBSplineShapeFunctions(int) - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
generateButton - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
generateCmdUsageInfo() - Method in interface gov.nih.mipav.view.Argument: Prints usage info for specific command
generateCmdUsageInfo() - Method in enum gov.nih.mipav.view.Argument.InstanceArgument
generateCmdUsageInfo() - Method in enum gov.nih.mipav.view.Argument.StaticArgument
generateCmdUsageInfo() - Static method in class gov.nih.mipav.view.ViewUserInterface: Generates automatic list of available commands.
generateCodeTable(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
generateCodeTable(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Generate the VOI contours from the probablity maps.
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
generateContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
generateContours_MRI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Generate the VOI contours from MRI prediction only.
generateContours_MRI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Generate the VOI contours from MRI prediction only.
generateConvexHullMask(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Algorithm Implementation Steps: 7.
generateCoordList() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Generates the coordinate list.
generateCoordList25D(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Generates the coordinate list 2.5 D.
generateCurves(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates the set of natural spline curves to fit the current lattice.
generated - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
generated - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
generated - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
generateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
generateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
generateDecoderTable() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
generateDecoderTable() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
generateDescriptors(Vector<SIFTImageSimilarity.KeyPoint>, ModelImage[][], int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
GenerateDGaussian - Class in gov.nih.mipav.model.algorithms: Calculates an n-dimensional gaussian volume at a given scale, kernel size, and normalized derivative (through the fourth order) in any of the dimensions.
GenerateDGaussian(double[], int[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.GenerateDGaussian: Initializes class that calculates an n-dim Gaussian.
GenerateDGaussian(double[], int[], double[], int[], double) - Constructor for class gov.nih.mipav.model.algorithms.GenerateDGaussian: Initializes class that calculates an n-dim Gaussian.
generateDoGImages(ModelImage[][]) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
generateEllipses(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
generateEllipsoidMesh() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Tessellate a unit sphere centered at the origin.
generateEllipsoidMesh(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Tessellate a unit sphere centered at the origin.
generateEllipsoidMesh(int, float, int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Tessellate a unit sphere centered at the origin.
generateEndingSlices() - Method in class gov.nih.mipav.view.ViewJFrameImage
generateFFTIndices(int) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: In order to use FFT, first thing is to rearrange the order of signals.
generateFFTIndices(int) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: In order to use FFT, first thing is to rearrange the order of signals.
generateFinePoints(int[], int[][]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
GenerateGaussian - Class in gov.nih.mipav.model.algorithms: Calculates an n-dimensional gaussian volume at a given scale, kernel size, and normalized derivative (through the fourth order) in any of the dimensions.
GenerateGaussian(double[], int[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.GenerateGaussian: Initializes class that calculates an n-dim Gaussian.
GenerateGaussian(double[], int[], double[], int[], double) - Constructor for class gov.nih.mipav.model.algorithms.GenerateGaussian: Initializes class that calculates an n-dim Gaussian.
GenerateGaussian(float[], int[], float[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.GenerateGaussian: Initializes class that calculates an n-dim Gaussian.
GenerateGaussian(float[], int[], float[], int[], double) - Constructor for class gov.nih.mipav.model.algorithms.GenerateGaussian: Initializes class that calculates an n-dim Gaussian.
generateGaussianImages(ModelImage, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
generateGaussianKernels(double, int) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
generateGaussianMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
generateGaussianMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
generateGaussianMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
generateGEID(FileDicomTagTable) - Static method in class gov.nih.mipav.model.file.FileIO
generateGrid(int[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
generateGrid(int[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
generateGTContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
generateGTContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
GenerateHistogram(GraphicsImage[], GraphicsImage[], String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Generate 2D histogram from the input image and the gradient-magnitude
generateIFinal(ModelImage, ModelImage, BitSet, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
generateInnerContour(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
generateInnerContour(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
generateInnerContour(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
generateInnerContour(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
generateInnerContour(VOIBase, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
generateInOutContours(VOIBase, float[], float[], Vector3f[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
generateInOutContours(VOIBase, float[], float[], Vector3f[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
generateInOutContours(VOIBase, float[], float[], Vector3f[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
generateInOutContours(VOIBase, float[], float[], Vector3f[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
generateInOutContours(VOIBase, float[], float[], Vector3f[], Vector3f[], Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
generateJacobian() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Jacobian used for non-linear least squares fitting.
generateJacobian() - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Jacobian used for non-linear least squares fitting.
generateJacobian() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Jacobian used for non-linear least squares fitting.
generateKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
generateLookupTable() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
generateMagEnhanced(double[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
generateMap(int, int, ModelImage, int[][], int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
generateMap(int, int, ModelImage, int[][], int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
generateMap(int, int, ModelImage, int[][], int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
generateMap(int, int, ModelImage, int[][], int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
generateMap(int, int, ModelImage, int[][], int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
generateMaskAngle(double[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
generateMenuItem - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
generateMTFValues() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
generateNewImages() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Generates new images.
generateNewTagValue(String, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Generates a new version of a particular tag that is DICOM compatible
generateNewTagValue(String, FileDicomTagTable, boolean) - Static method in class gov.nih.mipav.model.file.FileInfoDicom: Generates a new version of a particular tag in the given tag table with same length that is DICOM compatible
generateNewTagValue(String, String) - Static method in class gov.nih.mipav.model.file.FileInfoDicom: Generates a new version of a particular tag in the standard DICOM tag table with same length that is DICOM compatible
generateNewTagValue(String, String, FileDicomTagInfo.VR) - Static method in class gov.nih.mipav.model.file.FileInfoDicom: Generates a new version of a particular tag given an arbitrary value and returns a DICOM compatible result
generateNewTagValue(String, String, FileDicomTagInfo.VR, boolean) - Static method in class gov.nih.mipav.model.file.FileInfoDicom
generateNewTextureCoords(ModelImage, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Generates new texture coordinates for all surfaces, based on the new ModelImage texture-source.
GenerateNormalFiles(VolumeTriPlanarInterface) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: This function is called when the user selects the Surface or Composite Surface volume rendering option.
generateOrthonormalBasis(MjVector3f, MjVector3f, MjVector3f, boolean) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Input W must be initialized to a nonzero vector, output is {U,V,W}, an orthonormal basis.
generateOrthonormalBasis(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Generate a set (any set) of orthonormal basis vectors.
generateOutputImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
generatePatches() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
generatePatches() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
generatePath() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Generate the path planning path.
generatePhaseMask(BitSet, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
generatePoly() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
generatePoly(int, double[], int, int) - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
generateProgressValues(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Helper function to determine which values to pass on to linked algorithms (that will fire progress changes to the same progress bar).
generateRandomWeibull2param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
generateRandomWeibull3param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
generateRandString() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: generates a random, up to-5 character, hexadecimal string.
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitExponential
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitLine
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
generateResiduals() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Calculates the residuals for a given function, not implemented since some functions might prefer to only use a subset of data points, or not use yDataFitted if working during an iteration
generateRFACoordMaps() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Generates the texture coord map vectors for the three orthogonal slices.
generateRFACoordMaps() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Generates the texture coord map vectors for the three orthogonal slices.
generateRFACoordMaps(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: create texture coordmaps for the texture-mapped planes displaying the triSliceImages.
generateRFACoordMaps(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: create texture coordmaps for the texture-mapped planes displaying the triSliceImages.
generateSegContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
generateSegContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
generateSequentialWeibull2param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
generateSequentialWeibull3param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
generateShortImage(int) - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a solid (no holes) short image of regions defined by VOIs.
generateShortImage(int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Exports a short mask of the VOI[index].
generateSizeTable(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
generateSizeTable(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
generateSphereMesh(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Tessellate a unit sphere centered at the origin.
generateTestImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
generateTestImages() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: A test of the diffeomorphic demons is to transform a circle image to a letter C image.
generateTestImages() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: A test of the diffeomorphic demons is to transform a circle image to a letter C image.
generateTestImages() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: A test of the diffeomorphic demons is to transform a circle image to a letter C image.
generateTransformationMatrix(int) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
generateTriMesh(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
generateTriMesh(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
generateTriMesh2(boolean, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
generateUnsignedByteImage(int) - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a solid (no holes) unsigned byte image of regions defined by VOIs.
generateUnsignedByteImage(int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Exports an unsigned byte mask of the VOI[index].
generateVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
generateVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
generateVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
generateVOI(VOI, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: extract a VOI from a binary mask image.
generateVOIMask() - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a BitSet mask of all the VOIs and sets ImageModel mask.
generateVOIMask(boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a BitSet mask of all the VOIs and sets ImageModel mask.
generateVOIMask(boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a BitSet mask of all the VOIs and sets ImageModel mask.
generateVOIMask(short[], int) - Method in class gov.nih.mipav.model.structures.ModelImage: Generates a mask of the type short - without XORing VOI contours.
generateVOIMask(short[], int, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Exports a short mask of the VOI[index].
generateVOImesh(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: From the current shape, generate the corresponding triagnle meshes view.
generateVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: ASF writer version 0.90.
generateVolumeTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: generates an ImageComponent3D containing the ModelImage data.
genericImageName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Used as part of the image name; used in all processed image-sets.
genericInit() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
GenericKey(Object...) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey: Creates a new key from the specified objects
genericName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: portion of the file name for all anonymized images.
GenericPolygonClipper - Class in gov.nih.mipav.model.structures
GenericPolygonClipper() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper
GenericPolygonClipper(GenericPolygonClipper.gpc_op, VOI, VOI, VOI) - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper
GenericPolygonClipper.bbox - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.bundle_state - Enum in gov.nih.mipav.model.structures
GenericPolygonClipper.edge_node - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.gpc_op - Enum in gov.nih.mipav.model.structures
GenericPolygonClipper.gpc_vertex - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.gpc_vertex_list - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.it_node - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.lmt_node - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.polygon_node - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.sb_tree - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.st_node - Class in gov.nih.mipav.model.structures
GenericPolygonClipper.vertex_node - Class in gov.nih.mipav.model.structures
GenericRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
genFontSize - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters
genGaussianRandomNum(double, double) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a Gaussian random number greater or equal to the stRange and less than or equal to the endRange.
genGaussianRandomNum(float, float) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a Gaussian random number greater or equal to the stRange and less than or equal to the endRange.
genGaussianRandomNum(int, int) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a Gaussian random number greater or equal to the stRange and less than or equal to the endRange.
genLevelMask(int, int, float[], float, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 is a zero crossing is detected.
genLevelMask(int, int, float[], float, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 where a zero crossing is detected.
genLevelMask(int, int, float[], float, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 is a zero crossing is detected.
genLevelMask(int, int, float[], BitSet, float) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 is a zero crossing is detected.
genLevelMask(int, int, float[], BitSet, float) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 is a zero crossing is detected.
genLevelMask(int, int, float[], BitSet, float) - Static method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Generates a zero crossing mask for a 2D function sets a Bitset object to 1 is a zero crossing is detected.
genmmd_(int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
genRTCclassRTCaddTypeHashComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCaddTypeHashMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCarrayDef - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCattributeDefComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCdddef0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCdefineHashtables - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCEntry - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetDescriptionComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetDescriptionMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetElementComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetElementMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetGroupComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetGroupMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetIndexComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetIndexMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetTypeCodeComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCgetTypeCodeMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCsetRTCcodeName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCsetUnkownRTCcodeName - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCstaticSearchGroup - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCtypecodeComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCtypedef0 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCtypedefGeneral - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCunknownDDTypeComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCclassRTCunknownDDTypeMethod - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCimports - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCjavadocComments - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCpackage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genRTCwarning - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
genStandardGaussian() - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen
genTicksAndLabels(double, double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
genTicksAndLabels(double, double, int, boolean) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.TickMarkGenerator: Generates a number of tick marks and corresponding labels.
genUniformRandomNum(double, double) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a uniform random number greater or equal to the stRange and less than or equal to the endRange.
genUniformRandomNum(float, float) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a uniform random number greater or equal to the stRange and less than or equal to the endRange.
genUniformRandomNum(int, int) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: Generates a uniform random number greater or equal to the stRange and less than or equal to the endRange.
genZeroXMask(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Generates a zero crossing mask for a 2D function sets a ModelImage to 1 if a zero crossing is detected.
genZeroXMask(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Generates a zero crossing mask for a 2D function sets a ModelImage to 1 if a zero crossing is detected.
genZeroXMask(int, float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Generates a zero crossing mask for a 2D function sets a ModelImage to 255 if a zero crossing is detected.
genZeroXMask(int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Generates a zero crossing mask for a 2D function.
genZeroXMask(int, float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Generates a zero crossing mask for a 2D function.
geo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
geo - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
geod - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
geod - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
Geodesic - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Introduction: The goal of this task is to add the ability for the user to draw a region of interest on a triangle mesh surface, by allowing the user to select points on the mesh surface and calculating the connecting polyline on the surface between the points.
Geodesic() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Instantiation without initializing the progress bar, pickCanvas, GeodesicGroup, triangle mesh or sphere radius, each of those can be set through individual member access functions:.
Geodesic(PickCanvas, Group, ModelTriangleMesh, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Instantiaion of the Geodesic object, with the objects necessary for the Geodesic to serve as a MouseListener that performs picking and with the Group kGeodesicGroup so that the Geodesic curve can be drawn directly on the ModelTriangleMesh.
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
GEODESIC_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
GEODESIC_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
Geodesic_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Render
Geodesic_WM() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Instantiation without initializing the progress bar, pickCanvas, GeodesicGroup, triangle mesh or sphere radius, each of those can be set through individual member access functions:.
Geodesic_WM(TriMesh, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Instantiation of the Geodesic object, with the objects necessary for the Geodesic to serve as a MouseListener that performs picking and with the Group kGeodesicGroup so that the Geodesic curve can be drawn directly on the TriMesh.
geodesicAcceleration - Variable in class gov.nih.mipav.model.algorithms.LsqFit
geodesicCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilation(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: geodesic dilation of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicDilationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosion(boolean, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: geodesic erosion of a boolean, unsigned byte or unsigned short image using the indicated kernel and the indicated number of executions.
geodesicErosionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
geodesicGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Geodesic user-interface panel:
geodesicPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Geodesic panel.
geodesicPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Geodesic panel.
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Size of geodesic erosions and dilations
geodesicSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
geodesicSizeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
geodesicSizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
GeoLocation() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
GeoLocation(double, double) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation: Instantiates a new instance of MetadataExtractor.GeoLocation.
GeoLocationTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.GeoLocationTest
geom - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpace
geomCenter1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: geom center voi1
geomCenter2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: geom center voi2
GEOMETRIC_ZOOM - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage: Used to indicte geometric zoom steps (2x, 4x, 8x, 16x ...).
geometricCenterDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
Geometry - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
Geometry() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
geominit() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
geoms - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
geomx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
geomy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
geomz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
geScanner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
geScanner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
geSigna4XEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
geSoftwareVersion - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: int telling software version if datset is GE
gestl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
get() - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme: Returns the preset's ContourPlot.ColorScheme object
get() - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit: Gets the stored value of this storage unit to i.
get() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
get() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
get() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
get(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Construct a level surface from the 3D image managed by the extractor.
get(float, ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: Construct a level surface from the 3D image managed by the extractor.
get(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Retrieve the element in the array location i.
get(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Retrieve the element in the array location i.
get(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
get(int) - Method in class gov.nih.mipav.model.algorithms.Vectornd
get(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a Number object at position in the data array.
get(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in byte format.
get(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in byte format.
get(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in as Number.
get(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in Number format.
get(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in as a Number object.
get(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: function to get data where bounds checking is performed.
get(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
get(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Retrieve the element in the array location i.
get(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Retrieve the element in the array location i.
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer
get(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer
get(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is performed.
get(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
get(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
get(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
get(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
get(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
get(int, int) - Method in class gov.nih.mipav.model.structures.jama.JamaMatrix: Get a single element.
get(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is performed.
get(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is performed.
get(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is performed.
get(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Accessor that returns the tag with a certain hexadecimal key.
get(Image, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory: Creates a new BufferedImage of the specified imgType and same size as the provided image and draws the provided Image onto the new BufferedImage.
get(String) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Accessor that returns the tag with a certain hexadecimal key.
get_add_patch_matrix(int, int, int, int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
get_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
get_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
get_byte(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_C(int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
get_C(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
get_centroid(NelderMead.simplex_t, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead
get_class(RandomAccessFile, AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
get_colamd(int, int, int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
get_dac(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_data(int, float[][], int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
get_data(int, float[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
get_dht(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_dqt(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_dri(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_file_format(String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
get_frequency(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
get_interesting_appn(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
GET_INTERESTING_APPN - Static variable in class gov.nih.mipav.model.file.libjpeg
get_kaiserWindow(int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
get_keep_length(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
get_length() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
get_lse(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_metis(int, int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
get_next_file(int, FileJPEG2000.dircnt_t, FileJPEG2000.img_fol_t, FileJPEG2000.opj_decompress_parameters) - Method in class gov.nih.mipav.model.file.FileJPEG2000
get_nmf_default_options() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
get_nr_variable() - Method in interface gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Function
get_nr_variable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
get_nr_variable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
get_num_images(String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
get_perm_c(int, SuperLU.SuperMatrix, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
get_permutation_index(int[], int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
get_Q(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
get_Q(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
get_Q(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.QMatrix
get_Q(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
get_Q(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
get_Q(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
get_Q(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
get_Q(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.QMatrix
get_Q(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
get_Q(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
get_QD() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
get_QD() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
get_QD() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.QMatrix
get_QD() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
get_QD() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
get_QD() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
get_QD() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
get_QD() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.QMatrix
get_QD() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
get_QD() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
get_right_extent_length(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
get_seed() - Method in class gov.nih.mipav.model.structures.Triangulation
get_sof(libjpeg.jpeg_decompress_struct, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
get_soi(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_sos(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
get_subclass(RandomAccessFile, AlgorithmGaussianMixtureModelEM.SigSet, AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
get1DPointsInCircle(int, int, int, int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Calculates the points of an approximate sphere whose center is at (xCenter, yCenter) with a given radius.
get1DPointsInSphere(int, int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Calculates the points of an approximate sphere whose center is at value with a given radius.
get1DPointsInSphere(int, int, int, int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Calculates the points of an approximate sphere whose center is at (xCenter, yCenter, zCenter) with a given radius.
get1Jan1904EpochDate(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DateUtil
get2DPointsInCircle(int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Calculates the points of an approximate circle whose center is at (xCenter, yCenter) with a given radius.
get32BitNumberString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
get35mmFilmEquivFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
get3DPointsInSphere(int, int, int, double, double, double, double) - Static method in class gov.nih.mipav.util.CircleUtil
get3DPointsInSphere(int, int, int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Calculates the points of an approximate sphere whose center is at (xCenter, yCenter, zCenter) witha given radius.
get7BitStringFromBytes(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
geta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
getAAssociateRQ() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Returns the association request.
getABBlend() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
getABBlend() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
getABBlend() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getAbbrev() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getAboutInfo(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBase: Abstract method which is used by the extending class to return information about the file header.
getAboutInfo(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAboutInfo(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X
getAbserr() - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
getAbserr() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
getAbserr() - Method in class gov.nih.mipav.model.algorithms.ODE
getAbserr() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getAbsolute() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the absolute value of this object as a new Rational.
getAbsolutePath() - Method in class gov.nih.mipav.view.ViewFileTreeNode: The absolute path of the FileNode, as taken from its File.
getAccelerationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getAccelerationVectorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
getAccelerometerXDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAccelerometerYDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAccelerometerZDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAccessionNumber() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getACenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getACIns() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getACIns() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getAClipPlanePts() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the arbitrary clipping plane four corners points.
getAcpcAC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets anterior commissure in acpc space.
getAcpcDim() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets acpc image dimensions.
getACPCImage() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC
getAcpcMax() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets acpc max extent.
getAcpcMin() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets acpc min extent.
getAcpcPC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets posterior comissure in acpc space.
getAcpcRes() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets resolution in acpc space.
getAcqGradMat() - Method in class gov.nih.mipav.model.file.FileInfoBRUKER
getAcquiredCardiacCycles() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getAcquiredStudyDuration() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getAcquisitionMatrix() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getAcquisitionNumber() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getAcquisitionTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getAction() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelManipulator: Returns the action performed by this manipulator
getAction() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getAction() - Method in class gov.nih.mipav.model.scripting.ParsedActionLine: Returns the action which should be taken when this line is executed.
getActionCommand() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
getActionField() - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction
getActionMetadata() - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.BlankJistHook
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Return meta-information about this discoverable action for categorization and labeling purposes.
getActionMetadata() - Method in class gov.nih.mipav.view.dialogs.MTryJistHook
getActionName() - Method in class gov.nih.mipav.model.scripting.actions.ActionBase: Returns the script action command string for this action.
getActionName(Class) - Static method in class gov.nih.mipav.model.scripting.actions.ActionBase: Returns the script command string for an action.
getActionsForImagesUsedInScript(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns an array of the actions in which external images are used in a given script.
getActiveDLightingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getActiveImage() - Method in interface gov.nih.mipav.view.PaintGrowListener: Get the active image we are growing in.
getActiveImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the active image.
getActiveImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getActiveImage() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getActiveImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getActiveImage() - Method in class gov.nih.mipav.view.ViewControlsImage: Identifies which image is active.
getActiveImage() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns the active image.
getActiveImage() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the active image.
getActiveImage() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the reference to the currently active image.
getActiveImage() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getActiveImage() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getActiveImage() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getActiveImage() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Returns the current active image.
getActiveImageBuffer() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the active image buffer.
getActiveImageBuffer() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the active image buffer.
getActiveImageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor that returns the active image frame vector.
getActiveImageInfoDialog() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns a reference to the image info dialog for the active image.
getActiveImageSliceBuffer() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the active image buffer for this slice.
getActiveIndex() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
getActiveLookupTable() - Method in class gov.nih.mipav.view.PatientSlice: Returns the ModelLUT or ModelRGB based on which image is currently active, either imageA or imageB and they type of image (color or grayscale).
getActiveLookupTable(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Returns the ModelLUT or ModelRGB based on which image is currently active, either imageA or imageB and they type of image (color or grayscale).
getActiveLUT() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getActiveLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getActiveLUT() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the active image.
getActiveLUT() - Method in class gov.nih.mipav.view.ViewJFrameImage
getActiveLUT() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getActiveLUT() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getActiveLUT() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getActiveMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
getActivePt() - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the Vector3f of the active point.
getActiveRGB() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getActiveRGB() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getActiveRGB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the active image.
getActiveRGB() - Method in class gov.nih.mipav.view.ViewJFrameImage
getActiveRGB() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getActiveRGB() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getActiveRGB() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getActiveTransferFunction() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB: Get the transfer function.
getActiveVOICount() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getActiveVOIs(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: This legacy code returns all active vois for a given source image.
getActualReceiveFrequency() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getActualTransmitFrequency() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAdaptiveMean(int, float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Used for color images only when filterType == ADAPTIVE_VECTOR.
getADCImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Apparent Diffusion Coefficient Image.
getAddedVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Retrieve the VOI generated by the mask to voi extraction.
getAdditionalPluginDirectories() - Static method in class gov.nih.mipav.plugins.PluginUtil
getAdditionalSets() - Method in class gov.nih.mipav.model.file.FileImageXML: Returns the enumerated list of additional sets to be written into the header file.
getAdjMark() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the adjust mark flag.
getAdvancedSceneModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAdvectionWeight() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the advection weight 'b'.
getAdvFunction() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Accessor to return the advanced function string.
getAeLockDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getAESettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getAfAreaModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAfAreasDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: coordinates range from 0 to 255
getAfAssistLampDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAffiliation() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Gets affiliation.
getAffiliation() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getAffiliation() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getAffiliationString() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getAfFineTuneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getAFIlluminatorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getAFModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getAFNIOrigExtents() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the dimensions of the dicom ordered +orig AFNI image.
getAFNIOrigResolutions() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Return the resolutions of the dicom ordered +orig AFNI image return the array containing the dicom ordered +orig image resolutions.
getAFNITypeString() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns integer telling if file is AFNI HEAD_ANAT_TYPE, HEAD_FUNC_TYPE, GEN_ANAT_TYPE, or GEN_FUNC_TYPE.
getAFNIViewType() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns integer telling if file is AFNI +orig, +acpc, or +tlrc.
getAfPointDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getAfPointSelectedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getAfPointSelectedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: coordinates expressed as a percent
getAFPointSelectedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getAfPointUsedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getAfSearchDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getAgastPoints(int, Vector<Point2i>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getAgastScore(double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getAgastScore(double, double, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getAgastScore(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getAgastScore_5_8(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getAge() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getAge(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory: Attempts to convert the underlying string value (as stored in the directory) into an Age object.
getAIF_voxels() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
getAlias() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
getAll(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getAllConnections() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
getAllContourPoints() - Method in class gov.nih.mipav.model.structures.VOIBase
getAllEdgePoints(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
getAllExtensions() - Method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
getAllFileTypeDefaultExtensions() - Static method in class gov.nih.mipav.model.file.FileTypeTable
getAllFileTypeDescriptions() - Static method in class gov.nih.mipav.model.file.FileTypeTable
getAllFileTypeExtensions() - Static method in class gov.nih.mipav.model.file.FileTypeTable
getAllFileTypes() - Static method in class gov.nih.mipav.model.file.FileTypeTable
getAllLights() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Returns all general lights.
getAllowedBitDepths() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType
getAllowsChildren() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
getAllowsChildren() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Only directoies can allow children.
getAllParameters() - Static method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Returns all the parameters used in the decoding chain.
getAllParameters() - Static method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Returns all the parameters used in the decoding chain.
getAllParameters() - Static method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Returns all the parameters used in the encoding chain.
getAllParameters() - Static method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Returns all the parameters used in the encoding chain.
getAllSameDimUnits(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should now use enum
getAllSlices() - Method in class gov.nih.mipav.model.structures.VOIProtractor: Returns true if this protractor is displayed independent of z-value.
getAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
getAllValues(Vector<Double>, Vector<Integer>, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getAllWalls(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>, ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getAlpha() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
getAlpha() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getAlpha() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns T00, T01, and T02 in the transformation matrix.
getAlpha() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the alpha smoothing factor.
getAlpha() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
getAlphaArray() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of T00, T01, and T02 in the transformation matrix.
getalphaBlend() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns amount of alpha blending between two images.
getAlphaBlend() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getAlphaBlend() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the alphablend of the two image.
getAlphaBlend() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Accessor that returns the alphablend of the two image.
getAlphaBlend() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns float alphaBlend.
getAlphaBlend() - Method in class gov.nih.mipav.view.ViewJFrameBase: Returns a default alphaBlend value for blending of two images.
getAlphaBlend() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the alphaBlend value for blending between imageA and imageB.
getAlphaBlendSliderValue() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: This function returns the value of the blending slider.
getAlphaBlendSliderValue() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

This function returns the value of the blending slider.
getAlphaFunction() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor that returns the alpha transfer function.
getAnchor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getAnchor() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the anchor point.
getAnchor() - Method in class gov.nih.mipav.view.Rubberband: Returns the anchor point of the rubberband.
getAndMoveToFrontDecode() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
getAngioFlag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getAngle() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
getAngle() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getAngle() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Get the spot cone angle.
getAngle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the field of view angle.
getAngleInDegree(float, float) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the polar theta angle in Degree [0, 360].
getAngleInRadians(float, float) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the polar theta value in radians [0 , 2*PI].
getAngleString(double) - Method in class gov.nih.mipav.model.structures.VOIProtractor: Returns the angle of the protractor as a string.
getAngleString(float[]) - Method in class gov.nih.mipav.model.structures.VOIProtractor: Returns the angle of the protractor as a string.
getAnimateFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Method that returns the animate frame if it exists else returns null.
getAnimateTime() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
getAnnotationInfo(String, boolean[], Color[], float[], boolean[], Color[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
getAnnotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getAnnotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Returns list of annotations from lattice model.
getAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getAnnotationsPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getAnnotationsPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
getAnnotationsStraight() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getAnnotationsStraight() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getANormal() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAnotherPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns another mid-sag marker point for +orig to +acpc transformation in dataset ordering.
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Accessor that returns the final cost function.
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Accessor that returns the final cost function.
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Accessor that returns the final cost function.
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
getAnswer() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Accessor that returns the final cost function.
getAnteriorPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most anterior point marker for +acpc to +tlrc transformation in dicom ordering.
getAntiBlurDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getAPCenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getApertureValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getApertureValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getApexApertureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getApexBrightnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getApexFilmSpeedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getApexShutterSpeedTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getApplicationContext() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Accessor to return the application context.
getAppliedCorrections() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getApplyWindowLevel() - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Accessor that gets the applyWindowLevel boolean.
getAppName() - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
getAPPO(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Get APPO part of header.
getApproximateFNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getAppTitle() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get the title of this application.
GetArbInverse(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
getArbitratyClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getArbitratyClipOn() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getArch() - Static method in enum gov.nih.mipav.view.Preferences.SystemArchitecture: Gets the system architecture.
getArchitecture() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getArchString() - Static method in class gov.nih.mipav.util.NativeLibraryLoader
getArea() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the area of the VOI; return area defined by the VOI.
getArea() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Return the surface area of the ModelTriangleMesh objects.
getAreaUnitsOfMeasureStr() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the area unit for the data.
getArgument() - Method in interface gov.nih.mipav.view.Argument: Returns command in lower-case form.
getArgument() - Method in enum gov.nih.mipav.view.Argument.InstanceArgument
getArgument() - Method in enum gov.nih.mipav.view.Argument.StaticArgument
getArgument(String) - Static method in enum gov.nih.mipav.view.Argument.StaticArgument
getArgument(String, boolean) - Static method in enum gov.nih.mipav.view.Argument.InstanceArgument
getArgument(String, boolean) - Static method in enum gov.nih.mipav.view.Argument.StaticArgument
getArray() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
getArray() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
getArray1() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
getArray2() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
getArrayCopy() - Method in class gov.nih.mipav.model.structures.jama.JamaMatrix: Copy the internal two-dimensional array.
getArrayCurvePosition() - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Access the entire array of curves which define the positions of points along the path in 3D that is associated with this node.
getArrayName() - Method in class gov.nih.mipav.model.file.FileInfoMATLAB
getArrayPointPosition(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Access the array of 3D coordinates for the points which define the specified branch.
getArrayTransMatrix() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
getArrayTransMatrix() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Sorts the array of transformation matricies and returns the sorted array.
getArrayTransMatrix2() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Sorts the array of transformation matricies and returns the sorted array.
getArrythmiaRejectionRatio() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getArtFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getArtFilterEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getAsBooleanArray() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the contents of this list as an array of booleans, if the list contains ParameterBoolean elements.
getAsDoubleArray() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the contents of this list as an array of doubles, if the list contains ParameterDoubl elements.
getAsFloatArray() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the contents of this list as an array of floats, if the list contains ParameterFloat elements.
getAsIntArray() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the contents of this list as an array of ints, if the list contains ParameterInt elements.
getAsLongArray() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the contents of this list as an array of longs, if the list contains ParameterLong elements.
getAspectRatioDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getAsymmetryIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getata(int, int, int, int[], int[], int[], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
getAttenuation0() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Get the constant term of the attenuation polynomial.
getAttenuation1() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Get the linear term of the attenuation polynomial.
getAttenuation2() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Get the quadratic term of the attenuation polynomial.
getAttenuationCorrection() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getAudioDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getAuthors() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getAuthors() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getAuthorsString() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getAutoBracketingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getAutoCenterFrequency() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAutoExposureWarningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getAutoFlashCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getAutoFocusDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getAutoFocusPositionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getAutoManualPrescan() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAutoPortraitFramedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getAuxdata() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getAuxFile() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to the aux_file string.
getAuxFile() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to the aux_file string.
getAuxFile() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to the aux_file string.
getAuxFile() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to the aux_file string.
getAvailableCores() - Static method in class gov.nih.mipav.util.ThreadUtil: Return the available processors in your machine.
getAvailableImageList() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getAverage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
getAverage() - Method in class gov.nih.mipav.model.structures.VOIBase
getAverageIntensities() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
getAverageSAR() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAveragesNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getAvgInten() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the average intensity of the VOI return average intensity of image defined by the VOI.
getAvgInten() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getAvgIntenB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the average intensity of the Blue channel of VOI return average intensity of the Blue channel of image defined by the VOI.
getAvgIntenB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getAvgIntenG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the average intensity of the Green channel of VOI return average intensity of the Green channel of image defined by the VOI.
getAvgIntenG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getAvgIntenR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the average intensity of the Red channel of VOI return average intensity of the Red channel of image defined by the VOI.
getAvgIntenR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getAVICompression() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Gets the AVI compression.
getAVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box arbitrary selection value.
getAVisible() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Return check box arbitrary selection value.
getAvrConvexity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getAvrConvexity() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getAxes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: DOCUMENT ME!
getAxialComponentSlice() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the axial position of the slice.
getAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Read the current axis at index i.
getAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
getAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Read the current axis at index i.
getAxis(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Read the current axis at index i.
getAxisAligned() - Method in class gov.nih.mipav.view.PatientSlice: Returns whether the current slice is axis-aligned or rotated.
getAxisAligned() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Returns whether the slice is axis-aligned or rotated.
getAxisAngle() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get rotation axis alpha value.
getAxisAngle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
getAxisDirection() - Method in class gov.nih.mipav.model.file.FileInfoBase: Get the direction for accessing each axis of data.
getAxisFlip(ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the booean axisFlip array that describes how FileCoordinate axes are inverted in PatientCoordinates.
getAxisFlip(ModelStorageBase, int, boolean) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the booean axisFlip array that describes how FileCoordinate axes are inverted in PatientCoordinates.
getAxisOfChange() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates and returns the axis of change based on the srcImage.
getAxisOrder(ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the axisOrder array that describes how FileCoordinate axes are remapped for the PatientCoordinates.
getAxisOrderInverse(int[], int[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Inverts the input axisOrder so that points can be mapped back from PatientCoordinates to FileCoordinates.
getAxisOrientation() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns orientation of each axis.
getAxisOrientation() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Returns the orientations of the 3 axes.
getAxisOrientation() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the axis orientation of image.
getAxisOrientation(float[][]) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Return the 3 axis orientation codes that correspond to the closest standard anatomical orientation of the (i,j,k) axes.
getAxisOrientation(int) - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns orientation of entered axis.
getAxisOrientation(ModelStorageBase) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Gets the axisOrientation variables stored in the image.FileInfoBase object for the input ModelImage, image.
getAxisOrientation(TransMatrix) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Return the 3 axis orientation codes that correspond to the closest standard anatomical orientation of the (i,j,k) axes.
getAxisOrientation(TransMatrix) - Static method in class gov.nih.mipav.model.file.FileMGH: Return the 3 axis orientation codes that correspond to the closest standard anatomical orientation of the (i,j,k) axes.
getAxisOrientation(TransMatrix) - Method in class gov.nih.mipav.model.file.FileNIFTI: --------------------------------------------------------------------------- !
getAxisOrientation(TransMatrix) - Method in class gov.nih.mipav.model.file.FileNRRD: Return the 3 axis orientation codes that correspond to the closest standard anatomical orientation of the (i,j,k) axes.
getAxisOrientationFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the axis orientation associated with a string.
getAxisOrientationStr(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Return the string associated with an axis orientation.
getAxisSlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Return which axis has been currently selected for slicing the volume for rendering.
getAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get rotation axis X value.
getAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get rotation axis Y value.
getAxisZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get rotation axis Z value.
getb() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
getB0ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
getB1ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
getBabyAge1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getBabyAgeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getBabyNameDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
GetBackface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Return true if back-face culling is on, false otherwise.
getBackground() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getBackgroundColor() - Method in class gov.nih.mipav.model.structures.VOIText: Gets background color.
getBackgroundColor() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the background color used for rendering images.
getBackgroundColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
getBackgroundColor() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the background color.
getBackgroundColorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getBandSpacing() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getBandSpacingCounter() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
getBarycentric(Point2f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Support for conformal mapping to planar triangle mesh.
getBarycentric(Vector2f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Support for conformal mapping to planar triangle mesh.
getBase() - Method in enum gov.nih.mipav.model.file.FileInfoBase.UnitType
getBase() - Method in class gov.nih.mipav.model.structures.event.VOIEvent: returns the reference VOI.
getBaseNameforReconstructedSlices() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get baseNameforReconstructedSlices.
getBasisVectors(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getBasisX() - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Return the discretized B-Spline basis for the X axis.
getBasisX() - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Return the discretized B-Spline basis for the X axis.
getBasisY() - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Return the discretized B-Spline basis for the Y axis.
getBasisY() - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Return the discretized B-Spline basis for the Y axis.
getBasisZ() - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Return the discretized B-Spline basis for the Z axis.
getBBox(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
GetBBox(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
getBeginSlice() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the slice to begin saving at.
getBeginTime() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the time slice to begin saving at.
getBehaviorGroup() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the branch group that holds the mouse behavior.
GetBestSchurTemplateSpecialization(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
getBestTickSpacing(int, double) - Method in class gov.nih.mipav.view.ViewJSlider: Gets the best tick spacing by finding the value that divides into rangeNeeded with the greatest number that is still less than the maximum number of ticks that are allowed in the range
getBeta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
getBeta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getBeta() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns T10, T11, and T12 in the transformation matrix.
getBetaArray() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of T10, T11, and T12 in the transformation matrix.
getBetaHalflife() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getBias() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
getBias() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
getBilinear(int, double, double, int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Performs bilinear interpolation of image data.
getBilinear(int, double, double, int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Performs bilinear interpolation of image data.
getBilinear(int, float, float, int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Performs bilinear interpolation of image data.
getBilinear(int, float, float, int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Performs bilinear interpolation of image data.
getBilinear(int, float, float, int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Performs bilinear interpolation of image data.
getBiLinear(float[], int, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: getBiLinear - version of get that performs bi-linear interpoloation.
getBiLinear(float[], int, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: getBiLinear - version of get that performs bi-linear interpoloation.
getBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Version of get that performs bi-linear interpoloation.
getBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
GetBillboardPosition() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
getBinaryDataString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getBit(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Gets whether a bit at a specific index is set or not.
getBitFlagDescription(int, Object...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor: LSB first.
getBitmapType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getBitmapTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getBitPix() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to the bitpix value.
getBitPix() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to the bitpix value.
getBitPix() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to the bitpix value.
getBitPix() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to the bitpix value.
getBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
getBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
getBitsAllocated() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getBitSetBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the Bitset buffer (binary image).
getBitSetMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Gets the Mask image returned as a Java Bitset object.
getBitsPerChannelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getBitsPerPixel() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getBitsPerSample() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getBitsPerSampleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getBitsStored() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getBlackAndWhiteFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getBleachedROIShape() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
GetBlend() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Sets the blend factor shader parameter between imageA and imageB.
getBlendSliderValue() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Get the blender slider value
getBlendValue() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Get the imageA and imageB blending value from the PlaneRender.
getBlendValue() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the imageA and imageB blending value from the PlaneRender.
getBlock() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
getBlockConfigAndKernelString() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getblue() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns int blue.
getblue() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Accessor that returns int blue.
getblue() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns int blue.
getblue() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns int blue.
getBlue() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getBlue() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: accessor that returns int blue.
getBlueBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getBlueFunction() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor that returns the blue transfer function.
getBlueFunction() - Method in class gov.nih.mipav.model.structures.ModelRGB: Accessor that returns the blue transfer function.
getBlueX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getBlueY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Get the blurred curvature flow image.
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Get the blurred curvature flow image.
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Get the blurred curvature flow image.
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Get the blurred curvature flow image.
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Get the blurred curvature flow image.
getBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Get the blurred curvature flow image.
getBlurWarningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getbMatrixVals() - Method in class gov.nih.mipav.model.file.DTIParameters
getBodyFirmwareVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getBodyPart() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get subject's body part (optional).
getBOn() - Method in class gov.nih.mipav.model.structures.ModelRGB: Returns the boolean indicating if the blue channel should be displayed.
getBoolean(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a boolean, if possible.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a boolean value at position in the data array.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data from the object.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data from the object.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data from the object.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data from the object.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data from the object.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data from the object as a boolean.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data from the object as a boolean.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data from the object as a boolean.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data from the object as a boolean.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data from the object as a boolean.
getBoolean(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking.
getBoolean(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: n-Dimensional get data fuction where bounds checking is NOT performed.
getBoolean(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getBoolean(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getBoolean(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getBoolean(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the boolean value of one of the parameters from the table.
getBoolean(StringTokenizer) - Static method in class gov.nih.mipav.view.MipavUtil: Get a boolean value from a string tokenizer.
getBooleanObject(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a boolean.
getBooleanProperty(Properties, String) - Method in class gov.nih.mipav.model.structures.TransMatrix
getBooleanString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getBorderBufferNeighborList(int, int[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getBorderBufferNeighborList(int, int, float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getBorderColor() - Method in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
getBorderColor() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the color of the image border.
getBorderSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the size of the image border.
getBorderValue() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Get the image border value.
getBotX() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of bottom X boundaries for conversion to Talairach space.
getBotY() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of bottom Y boundaries for conversion to Talairach space.
getBotZ() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of bottom Z boundaries for conversion to Talairach space.
getBound() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the bounds sphere.
getBoundary() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the indices of the boundary points of the current region.
getBoundary() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Get the indices of the boundary points of the current region.
getBoundary() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Get the indices of the boundary points of the current region.
getBoundary() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The set of boundary points that were identified as part of the coarse-level region growing.
getBoundaryCode(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
getBoundedVolume() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Returns the crop bounding volume as a CubeBounds object.
getBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
getBoundingBoxColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
getBoundingBoxFlag() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the bounding box flag.
getBoundingBoxLeftMiddle(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box middle left-edge point for the input VOI.
getBoundingBoxLowerLeft(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box lower edge left corner for the input VOI.
getBoundingBoxLowerMiddle(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box lower edge middle point for the input VOI.
getBoundingBoxLowerRight(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box lower edge right corner for the input VOI.
getBoundingBoxRightMiddle(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box middle right-edge point for the input VOI.
getBoundingBoxUpperLeft(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box upper edge left corner for the input VOI.
getBoundingBoxUpperMiddle(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box upper edge middle point for the input VOI.
getBoundingBoxUpperRight(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the bounding box upper edge right corner for the input VOI.
getBounds() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getBounds() - Method in class gov.nih.mipav.view.Rubberband: Gets a rectangle that is the bounds of the rubberband.
getBounds() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that returns the bounds of the component.
getBounds(float[], float[], float[]) - Method in class gov.nih.mipav.model.structures.VOI: Calculates the extents or boundary of the voi in x, y, and z.
getBounds(float[], float[], float[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the bounds of the contour.
getBounds(int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.VOI: Calculates the extents or boundary of the voi in x, y, and z.
getBounds(int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the bounds of the contour.
getBoundsDistance(Vector3f, Vector3f, Vector3f, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
getBoundsWithRotation() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getBoundXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the negative X slice bound.
getBoundXPos() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the positive X slice bound.
getBoundYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the negative Y slice bound.
getBoundYPos() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the positive Y slice bound.
getBoundZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the negative Z slice bound.
getBoundZPos() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the location of the positive Z slice bound.
getBox() - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
getBox(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getBoxSliceInScreen(Vector3f[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: sets up the values for the ViewJComponentBoxSlice array.
getBoxSliceInScreen(Vector3f[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: sets up the values for the ViewJComponentBoxSlice array.
getBoxWithHole(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getBoxX() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the checkbox of X slider.
getBoxX() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the checkbox of X slider.
getBoxY() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the checkbox of Y slider.
getBoxY() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the checkbox of Y slider.
getBoxZ() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the checkbox of Z slider.
getBoxZ() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the checkbox of Z slider.
getBracketB() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
getBracketBound() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getBracketSettingsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getBracketStepDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getBrainMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the 3D image that represents the extracted brain.
getBrainMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getBrainSelection() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the current brain selection term, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.
getBrainVolume() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the 3D image that represents the extracted brain.
getBrainVolume() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Returns the volume of the brain in units (typically millimeters).
getBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the BranchGroup from the scene graph
getBranchCurve() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Access the curve in the path graph currently positioned along.
getBranchCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Access the curve in the path graph currently positioned along.
getBranchCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Access the curve in the path graph currently positioned along.
getBranchDistUnvisitedMax() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Access the normalized distance traveled from the end of the current branch path.
getBranchDistUnvisitedMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Access the normalized distance traveled from the end of the current branch path.
getBranchDistUnvisitedMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Access the normalized distance traveled from the end of the current branch path.
getBranchDistUnvisitedMin() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Access the normalized distance traveled from the beginning of the current branch path.
getBranchDistUnvisitedMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Access the normalized distance traveled from the beginning of the current branch path.
getBranchDistUnvisitedMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Access the normalized distance traveled from the beginning of the current branch path.
getBranchGroup() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the branch group of this 3D object, the parent of the transform group.
getBranchIndex() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the index of the branch from which the item was seen and annotated.
getBranchIndex() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Access the index of the curve in the path graph currrently positioned along.
getBranchIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the index of the branch from which the item was seen and annotated.
getBranchIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Access the index of the curve in the path graph currrently positioned along.
getBranchIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Access the index of the curve in the path graph currrently positioned along.
getBranchingFactor() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getBranchParentIndex(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return the index of the parent branch for the specified branch.
getBranchParentNormalizedDist(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return the normalized distance (in range [0,1]) along the parent branch where the specified branch starts.
getBranchPathShape() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: For displaying the Path in the surface renderer:
getBranchPointBranches(int, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return the array of branch indexes for all of the child branches which start at the specified point along the specified parent branch.
getBranchPointEntryArray(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return the array of TreeMap entries which stores all of the child branch information for the specified input branch.
getBranchPoints(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return array of relative path distances (in range [0,1]) where branch points occur along the specified input branch.
getBranchPointSegment(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Return an index which identifies segment the specified normalized path distance belongs.
getBranchPointSegment(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Return an index which identifies segment the specified normalized path distance belongs.
getBranchPointSegment(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Return an index which identifies segment the specified normalized path distance belongs.
getBranchState() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getBranchState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the current state of traversing.
getBranchState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getBranchState() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the current state of traversing.
getBranchState() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
getBranchState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Get the current state of traversing.
getBrickLabsString() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the brick labs string for identifying sub-bricks.
getBrightnessValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getBrushSize() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get whether or not to do the brute-force registration.
getbSplineAlgo() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
getBuffer() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
getBuffer() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
getBuffer3Bytes(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Converts byte data to int data.
getBufferByte() - Method in class gov.nih.mipav.model.file.FileNIFTI
getBufferDouble(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to double data.
getBufferedRaster(int) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Access texture data from the BufferedImage with given z slice number.
getBufferFloat(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to float data.
getBufferFloat(byte[], int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Converts byte data to float data.
getBufferInt(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to int data.
getBufferInt(byte[], int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Converts byte data to int data.
getBufferLong(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to int data.
getBufferShort(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to short data.
getBufferShort(byte[], int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Converts byte data to short data.
getBufferTypeStr(int) - Static method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the string for a particular buffer type.
getBufferUShort(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to int data.
getBufferValue(boolean, boolean, float[], int) - Method in class gov.nih.mipav.view.PatientSlice: Helper method for calculating complex values.
getBugFromDescription(String) - Static method in enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
getBundledPlugIns() - Method in class gov.nih.mipav.plugins.PlugInBundle: Subclasses should override this method to return the list of plugins that they encompass.
getBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return one of the treatment's burns.
getBurnBase() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the burn base reference inside the probe control panel.
getBurnCenter(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the center point of a burn.
getBurnEnum() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the list of burns as an enumeration.
getBurnLabelFlag() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the show burning point label's flag.
getBurnMask() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the burnning point ( sphere packing or ellipsoid packing ) mask.
getBurnName(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the name of a burn.
getBurnPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the burning point world coordinate.
getBurnRadius(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the diameter of a burn.
getBurnRootParentBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the root of the burning point.
getBurnRootParentBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the burn root branch group.
getBurnVolume(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the volume of a burn.
getBurstModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getBurstModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getButtonPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogText: Accessor to the JPanel which holds the buttons at the bottom of the dialog.
getButtons() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Return all the buttons in a single array.
getbValues() - Method in class gov.nih.mipav.model.file.DTIParameters
getBWModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getByLineDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getByLineTitleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getByte() - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads unsigned bytes from file.
getByte() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
getByte() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Gets the next byte in the sequence.
getByte() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
getByte(byte[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getByte(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
getByte(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
getByte(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Gets the byte value at the specified byte index.
getByte(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a byte value at position in the data array.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in byte format.
getByte(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking
getByte(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getByte(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getByte(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Short or an array of Short as needed by the tag's VM.
getByte(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getByte(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getByteArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets the specified tag's value as an byte array, if possible.
getByteBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getByteBuffer() - Method in class gov.nih.mipav.model.file.FilePackBit: Gets the byte buffer of the image data.
getByteBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the byte buffer (image).
getByteImageData(ModelImage, int, int) - Method in class gov.nih.mipav.model.file.FileIO
getByteLengthDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getByteOrdering() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
getBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunk
getBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StringValue
getBytes(byte[], int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
getBytes(byte[], int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Retrieves bytes, writing them into a caller-provided buffer.
getBytes(byte[], int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
getBytes(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
getBytes(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns the required number of bytes from the sequence.
getBytes(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
getBytes(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
getBytes(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
getBytes(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns the required number of bytes from the specified index from the underlying source.
getBytes(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
getBytes(MetadataExtractor.SequentialReader, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDhtReader
getBytesPerPixel() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getByteTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getC() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
getC(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Color function to get data where bounds checking is performed.
getCachedOrCreateRaster(int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
getCalledAppTitle() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Accessor to return the called application entity title.
getCallingAppTitle() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Accessor to return the calling application entity title.
getCalMax() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to cal-max.
getCalMax() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to cal-max.
getCalMax() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to cal-max.
getCalMax() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to cal-max.
getCalMin() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to cal_min.
getCalMin() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to cal-min.
getCalMin() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to cal_min.
getCalMin() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to cal-min.
getCalUnits() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the string for cal units.
getCalUnits() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the string for cal units.
getCameraControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Get the rotation control dialog box.
getCameraControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Get the rotation control dialog box.
getCameraControl() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the camera control panel.
getCameraDirection() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the Camera direction vector at the Annotation point.
getCameraDirection() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Return the camera direction vector.
getCameraElevationAngleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getCameraIdDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getCameraLocation() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the Camera 3D position at the Annotation point.
getCameraLocation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the camera current location
getCameraMake() - Method in class gov.nih.mipav.model.file.FileInfoBase
getCameraModel() - Method in class gov.nih.mipav.model.file.FileInfoBase
getCameraModelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getCameraOrientationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the camera control panel.
getCameraParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the camera parameters.
getCameraRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the Camera right vector at the Annotation point.
getCameraSettingsVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getCameraTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getCameraTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getCameraType2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getCameraTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getCameraUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the Camera up vector at the Annotation point.
getCameraUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Return the camera up vector.
getCancelButton() - Method in class gov.nih.mipav.view.ViewJProgressBar: Get the cancel button
getCanvas() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Returns the VolumeCanvas3D object.
getCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the canvas for this 3D object.
getCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
GetCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Returns the GLCanvas in the m_pkRenderer object.
GetCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
GetCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
GetCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay: Return the GLCanvas for display.
GetCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
getCanvasCenter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Gets the canvas center.
getCanvasCenter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Gets the canvas center.
getCaptionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCaptureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getCardiacFrequency() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getCardiacHeartRate() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCardiacPhaseNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCardiacPhaseNumber() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getCardiacRepTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCartesianX(float, float) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Givem Polar coordinate system r and theta, calculate the Cartesian coordinate X.
getCartesianY(float, float) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Givem Polar coordinate system r and theta, calculate the Cartesian coordinate Y.
getCasioPreviewThumbnailDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getCategory() - Method in interface gov.nih.mipav.plugins.BundledPlugInInfo: Specifies the menu structure of a particular plug-in.
getCategory() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getCategory() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getCategoryDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCc() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
getCcdIsoSensitivityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getCcdSensitivityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getCcdSensitivityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getCDATA(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Converting string value to CDATA format.
GetCell(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
GetCell(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
GetCell(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
GetCell(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
getCellColor(SoftwareMaterial, SoftwareVertexProperty, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Compute the "lighted" color of the cell at the specified position with the specified normal vector and base color.
getCellData() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
getCellEditorValue() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
getCenter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Get the center of the quadric surface.
getCenter() - Method in class gov.nih.mipav.view.PatientSlice: Return the current center of the volume in FileCoordinates.
getCenter() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Returns the current center point of the 3 intersecting ModelImage planes in FileCoordinates.
getCenter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Gets the three slider positions, representing the center point of the three orthogonal planes.
getCenter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets the center of the ModelTriangleMesh objects.
getCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Gets the three slider positions, representing the center point of the three orthogonal planes.
getCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget
getCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate and return the current center of the widget in world coordinates.
getCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getCenter() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Returns the current center point in FileCoordinates:
getCenter() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Sets the x coordinate of the point to be the center of the transformed image.
getCenter() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Sets the x coordinate of the point to be the center of the transformed image.
getCenter() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Sets the x coordinate of the point to be the center of the transformed image.
getCenter(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
GetCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return center of the surface.
getCenterCenter() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getCenterControlPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getCenterOfMass() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Returns the computed center of mass.
getCenterOfMass() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the center of mass of the VOI ; return center of mass defined by the VOI.
getCenterOfMass(ModelImage) - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the center of mass of the contour for a given image
getCenterOfMass(ModelImage, Vector3f, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the center of mass of the contour for the image and color-channel c.
getCenterOfMassB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the blue center of mass of the VOI ; return blue center of mass defined by the VOI.
getCenterOfMassB(ModelImage) - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the blue center of mass of the contour.
getCenterOfMassG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the green center of mass of the VOI ; return green center of mass defined by the VOI.
getCenterOfMassG(ModelImage) - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the green center of mass of the contour.
getCenterOfMassR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the red center of mass of the VOI ; return red center of mass defined by the VOI.
getCenterOfMassR(ModelImage) - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the red center of mass of the contour.
getCenterOfRotation() - Method in class gov.nih.mipav.model.file.FileInfoMetaImage
getCenterPointX() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
getCenterPointY() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
getCenterPointZ() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
getCenterPt() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getCenterPt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameImage
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getCenterPt() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getCenterPtLocation() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Gets the center point of rotation.
getCenterValue(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getCentroids() - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: accessor that returns the array of initial centroid values.
getCentroids() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
getCentroids() - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: Accessor that returns the array of initial centroid values.
getCentroids() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
getCentroids(ModelImage, AlgorithmFuzzyCMeans, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
getCentroidsThreshold() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
getCfaPattern2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase: String description of CFA Pattern Indicates the color filter array (CFA) geometric pattern of the image sensor when a one-chip color area sensor is used.
getCfaPatternDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase: String description of CFA Pattern Converted from Exiftool version 10.33 created by Phil Harvey http://www.sno.phy.queensu.ca/~phil/exiftool/ lib\Image\ExifTool\Exif.pm Indicates the color filter array (CFA) geometric pattern of the image sensor when a one-chip color area sensor is used.
getChangedCurveOfInterest() - Method in class gov.nih.mipav.model.structures.UpdateVOIEvent: DOCUMENT ME!
getChangedValues() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getChangedVolumeOfInterest() - Method in class gov.nih.mipav.model.structures.UpdateVOIEvent: DOCUMENT ME!
getChangeTab(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener
getChannelCountDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getChannelID() - Method in class gov.nih.mipav.model.file.FileInfoCZI
getChannels() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getCharset() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StringValue
getCheckbox() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
getCheckboxLabels() - Static method in class gov.nih.mipav.view.JPanelStatisticsList
getCheckboxLength() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
getChf() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
getChf() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
getChildAt(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
getChildCount() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
getChildNodeIDs() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getChildNodeIDs() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getChisq() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction
getChiSquared() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
getChiSquared() - Method in class gov.nih.mipav.model.algorithms.NL2sol: getChiSquared - accessor to chi-squared value (goodness-of-fit measure).
getChiSquared() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: getChiSquared - accessor to chi-squared value (goodness-of-fit measure).
getChiSquared() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: getChiSquared - accessor to chi-squared value (goodness-of-fit measure).
getCircleRadius() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getCircularity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the circularity of the VOI.
getCitations() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getCitations() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getCitationsString() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getCityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getClassArray() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
getClassArray() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
getClasses(libdt.DytexMix, Vector<libdt.Mat>, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
getClasses(libdt.DytexMix, Vector<libdt.Mat>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt
getClassificationImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Accessor that returns the classification image.
getClassValues() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
getClassValues() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
getCleanImageBufferB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getClearRetouchDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getClickCountToStart() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
getClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipAEEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipArb() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipArbInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
getClipColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipColors() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
getClipDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return clipPanel from parent frame.
getClipDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return clipPanel from parent frame.
getClipDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipDisplayed() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
GetClipEffect() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Return current clipping state.
getClipEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
getClipEye() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipEyeInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipInvDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getClipInvEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
getClipInvEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
GetClipped() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
getClippedMatrix() - Method in class gov.nih.mipav.view.ViewUserInterface: Retrieves the clipped matrix for paste action.
getClippedScannerVectors() - Method in class gov.nih.mipav.view.ViewUserInterface: Deprecated.
getClippedVOIs() - Method in class gov.nih.mipav.view.ViewUserInterface: Deprecated.
getClippingPathNameString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
GetClipRadius() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
getClipValues() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
getCmdLineArguments() - Method in class gov.nih.mipav.view.ViewUserInterface: Returns the Command line arguments (as one string, each separated by a space) .
getCoarseBegin() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the coarse sample begin.
getCoarseEnd() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the coarse sample end.
getCoarseRate() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getCoarseRate() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the coarse sample rate.
getCoarseRateX() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getCoarseRateY() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getCoarseRateZ() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getCoarseVal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Get the coarse value.
getCoarseVal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEdit: abstract method returning the panel's value.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditAxisOrientation: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditBoolean: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditChar: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditDate: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditDefault: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditImageOrientation: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditModality: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditOrientation: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditRace: DOCUMENT ME!
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditSetOrParam: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditSex: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditTime: If the information held by the panel is stored as a code (as in 'M' for "male" or 'F' for "female"), then this code will be returned by this method.
getCodedValue() - Method in class gov.nih.mipav.view.JPanelEditValueType: DOCUMENT ME!
getCodedValue() - Method in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
getCoeff(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
getCoefficient(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Get the coefficients of the quadratic equation that represents the approximating quadric surface.
getCoefficients() - Method in class gov.nih.mipav.model.structures.RealPolynomial
getCoilName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCoilType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCol() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
getCollapseImage() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getColor() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getColor() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the VOI's color.
getColor() - Method in class gov.nih.mipav.model.structures.VOIText: Gets the font color (for copy/paste operations).
getColor() - Method in class gov.nih.mipav.view.ColorIcon: getColor - gets the color of the icon.
getColor() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query the current based color of the light.
getColor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the current burning point color.
getColor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the buring point surface color.
getColor() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: Returns the color of the slice:
getColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
getColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the widget current color from the widget shader.
getColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Returns the current color of the VOI.
getColor() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
getColor() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getColor - gets the color of the line on the graph.
getColor(int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap: Returns the ith color
getColor(int) - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
getColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
getColor(int) - Method in class gov.nih.mipav.model.structures.ModelLUT: Gets a specific index of the LUT.
getColor(int) - Method in class gov.nih.mipav.model.structures.ModelRGB: Gets a specific index of the RGB table.
getColor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
getColor(ModelTriangleMesh, int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Calculates and returns the start point color for a new starting point inside an existing triangle.
getColor(ModelTriangleMesh, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Get the the triangle color from the given triangle index.
getColor(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Called when reading the input surface.xml file: Parses the input string into a Color3f variable:
getColor(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when reading the input surface.xml file: Parses the input string into a Color3f variable:
getColor(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Called when reading the input surface.xml file: Parses the input string into a Color3f variable:
getColor(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Called when reading the input surface.xml file: Parses the input string into a Color3f variable:
getColor(TriMesh, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Calculates and returns the start point color for a new starting point inside an existing triangle.
getColor(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Get the the triangle color from the given triangle index.
GetColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Returns the color of the widget color transfer function.
GetColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
getColor1() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColor2() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColor3() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColor3() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets a Color3f copy of the surface color.
getColor4() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColor4f() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets the surface color.
getColorA() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getColorAdjustmentModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getColorB() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getColorBackground() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColorChange(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: This is called when the user chooses a new color for the surface.
getColorChange(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: This is called when the user chooses a new color for the surface.
getColorCopy() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the colors of a triangle mesh.
getColorCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getColorCreatorEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getColorDialog() - Method in class gov.nih.mipav.view.ViewJColorChooser
getColorEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getColorEncoding() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getColorEncodingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getColorFactor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Calculates and returns the color factor based on the srcImage.
getColorFactor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates and returns the color factor based on the srcImage.
getColorFactor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Calculates and returns the color factor based on the srcImage.
getColorFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getColorG() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getColorimage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getColorImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Color Map Image.
getColorLocal(int, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Gets the stored local color.
getColorMapImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
getColorMapped(int[], Color3f, float, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Get the color from the RGB lookup table:
getColorMapped(ModelRGB, int[], int, float[], int, ColorRGBA) - Method in class gov.nih.mipav.view.PatientSlice: Get the color from the RGB lookup table:
GetColorMapTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Color Map Texture.
getColorMatrix2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDescriptor
getColorMatrixDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getColorMatrixDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getColorModeCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getColorModel() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
getColorPallete(FileDicomTagTable, FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a pallete (look-up table) out of the given DICOM key and interprets the data based on the data-size specification tag.
getColorR() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getColorRGBA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets the surface color.
getColors() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap
getColors() - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
getColors() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
getColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getColors(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when reading the input surface.xml file: Parses the input string into a an array of Color4f[], representing the mesh per-vertex colors:
getColorSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getColorScheme() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
getColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getColorSpaceType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getColorSpaceTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getColorString() - Method in class gov.nih.mipav.model.structures.VOIText: Gets a string describing the font's color (for saving in XML header).
getColorString() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
getColorString(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Called when writing the surface.xml file: Converts the input Color3f to a String for writing:
getColorString(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when writing the surface.xml file: Converts the input Color3f to a String for writing:
getColorString(Color4f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when writing the surface.xml file: Converts the input array of Color4f[] to a String for writing:
getColorString(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Called when writing the surface.xml file: Converts the input Color3f to a String for writing:
getColorString(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Called when writing the surface.xml file: Converts the input Color3f to a String for writing:
getColorTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getColorText() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorScheme
getColorToneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getColorTransformDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
getColorType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getColorTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getColour(int) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
getColour(int) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
getColourDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getColourModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getColumn(int, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrix: Copy our data into the provided double array
getColumn(int, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Copy our data into the provided double array
GetColumn(int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
getColumnBaseIndex(String) - Method in class gov.nih.mipav.view.ViewTableModel: Gets the index of the given column name.
getColumnClass(int) - Method in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
getColumnClass(int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getColumnClass(int) - Method in class gov.nih.mipav.view.ViewTableModel: Returns the class of the item in the column.
getColumnCount() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getColumnIndex(String) - Method in class gov.nih.mipav.view.ViewTableModel: Gets the index of the given column name.
getColumnName(int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getColumnNames() - Method in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
getColumnNames() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
getColumns() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getColumnStartsWithIndex(String) - Method in class gov.nih.mipav.view.ViewTableModel: Gets the index of a column name that starts with the given string
getCOMInfo() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Return the information found in the COM marker segments encountered in the decoded codestream.
getCOMInfo() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Return the information found in the COM marker segments encountered in the decoded codestream.
getCommand(String) - Static method in enum gov.nih.mipav.view.Argument.InstanceArgument
getComments() - Method in class gov.nih.mipav.model.structures.VOI
getComments() - Method in class gov.nih.mipav.model.structures.VOIText
getCommon() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem
getCommonExtension() - Method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
getCompA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the opacity histrogram component of the imageA.
getCompA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the opacity histrogram component of the imageA.
getCompA_GM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the opacity histrogram component of the Gradient Magnitude imageA.
getCompA_GM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the opacity histrogram component of the Gradient Magnitude imageA.
getComparator(int) - Method in class gov.nih.mipav.model.structures.TableSorter: Gets an appropriate comparator for sorting the particular column
getCompareType() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator: DOCUMENT ME!
getCompB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the opacity histrogram component of the imageB.
getCompB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the opacity histrogram component of the imageB.
getCompB_GM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the opacity histrogram component of the Gradient Magnitude imageB.
getCompB_GM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the opacity histrogram component of the Gradient Magnitude imageB.
getCompData(DataBlk, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompleteFileNameList(String) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Returns the complete list of file names according to given file name.
getCompleteFileNameList(String) - Static method in class gov.nih.mipav.model.file.FilePARREC: Returns the complete list of file names according to given file name.
getCompleteFileNameList(String) - Static method in class gov.nih.mipav.model.file.FileSiemensText: Returns the complete list of file names according to given file name.
getCompleteFileNameList(String) - Static method in class gov.nih.mipav.model.file.FileSpar: Returns the complete list of file names according to given file name.
getCompleteFileNameListDefault(String) - Method in class gov.nih.mipav.model.file.FilePARREC: Gets the header and image file names given a header or image file name
getComplexDisplay() - Static method in class gov.nih.mipav.view.Preferences: Returns how pixel values are displayed on the MIPAV toolbar for complex images.
getComponent() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
getComponent() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
getComponent(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey: Returns the component at specified index
getComponent(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getComponent(int, Class<T>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey: Returns the component at specified index casted to the specified type
getComponent(JComponent, int) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
getComponentByName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
getComponentConfigurationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getComponentDataDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getComponentHistoLUT(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
getComponentId() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent
getComponentImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: get component image
getComponentImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: get component image
getComponentImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getComponentImage() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the reference to the component image.
getComponentImage() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Returns the reference to the component image.
getComponentImage() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Returns the Component displaying the current active image.
getComponentImageDicom() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
getComponentImageXY() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Accessor that returns the reference to componentImageXY.
getComponentName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent: Returns the component name (one of: Y, Cb, Cr, I, or Q)
getComponentName(Component, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
getComponentName(Object, Component, String, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
getComponentPreviewImage() - Method in class gov.nih.mipav.view.ViewImageDirectory: Gets the ViewJComponentPreviewImage that contains the currently selected model image.
getComponents() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Construct the connected components of the mesh.
getComponents() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Construct the connected components of the triangle mesh.
getComponents(Vector) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Construct the connected components of the mesh by factoring the connectivity array into disjoint subarrays.
getComponentSizeBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
getCompositeImageA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Access to retrieve the array ARGB composite 3D texture values for image A.
getCompositeMatrix(boolean) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Gets the composite (dynamically built) matrix made by multiplying in forward order the image's matrices.
getCompressed() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the compressed value.
getCompressed() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the compressed value.
getCompressed() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the compressed value.
getCompressedAverageBitsPerPixelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getCompression() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getCompression() - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Returns an int (based on AlgorithmTranscode's static variables) representing the compression type to be used.
getCompression() - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Returns an int (based on AlgorithmTranscode's static variables) representing the compression type to be used.
getCompressionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getCompressionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getCompressionType() - Method in class gov.nih.mipav.model.file.FileInfoBase: Gets the compression type.
getCompressionType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getCompressionTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getComputedPaintMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Method is used when the "extract paint" option is set.
getConcatenatedSATSelection() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getConnect() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getConnection(int) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
getConnectivity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getConnectivity() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Get the connectivity vector.
getConnectivity(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when reading the input surface.xml file: Parses the input string into a an array of int[] to represent the mesh connectivity:
getConnectivity(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Parse the connectivity index from the section.
getConnectivityCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getConsistentComponents() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Construct the connected components of the mesh.
getConsistentComponents() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Construct the connected components of the triangle mesh.
getConstant() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Get the constant term for the factored quadratic equation.
getConstrainedValues(double[], int) - Method in class gov.nih.mipav.model.algorithms.NMSimplex
getConstraints() - Method in class gov.nih.mipav.view.components.PanelManager: Returns the current constraints of this panel manager.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates a string with the parameters that the image was constructed with.
getConstructionInfo() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates a string with the parameters that the image was constructed with.
getContactPerson() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getContainingPanel() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns the main interface panel for display in another interface.
getContainingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Returns the container for this object.
getContainingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Returns the container for this object.
getContainingTriangle(Point2f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Support for conformal mapping to planar triangle mesh.
getContainingTriangle(Vector2f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Support for conformal mapping to planar triangle mesh.
getContentDescriptor() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
getContentDescriptor() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
getContentDescriptor() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
getContentLength() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
getContentLength() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
getContentLength() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
getContentTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getContentType() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: Content type is of RAW since we are sending buffers of video frames without a container format.
getContentType() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: Content type is of RAW since we are sending buffers of video frames without a container format.
getContiguousSlices() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getContinuousDriveModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getContinuousUpdate() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Return whether to update the Volume Tri-Planar view continuously as the fly path changes.
getContourFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getContourGraph() - Method in class gov.nih.mipav.model.structures.VOI: Returns the contour graph associated with this voi.
getContourID() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the contour ID: the index of this contour into the VOI.
getContourLength(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
getContourStatistic(String, String) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties: Gets the statistic for a particular contour of a VOI without reference to the slice a contour may exist on.
getContourVector() - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler: Get the whole contour vector generated from the xml file.
getContourVector() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: Get the whole contour vector generated from the xml file.
getContourX(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
getContourY(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
getContrastAgent() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getContrastAmount() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getContrastBolusAgent() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusIngredient() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusIngredientConcentration() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusRoute() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusStartTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusTotalDose() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastBolusVolume() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getContrastModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getContrastSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getContrastType() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getContrastUsed() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getControl(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: DOCUMENT ME!
getControl(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
getControl(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
getControl(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
getControl(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
getControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the main control panel.
getControlPoint(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Retrieve the position of the specified control point.
getControlPoint(int, int, Vector2f) - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Retrieve the position of the specified control point.
getControlPointMaxMoveDist(int, int, int, Vector3f, float) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Compute the maximum distance the control point can be moved in the specified direction while keeping the control point relative to its 26 neighboring control points such that "folding" does not occur.
getControlPointMaxMoveDist(int, int, Vector2f, float) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Compute the maximum distance the control point can be moved in the specified direction while keeping the control point relative to its 8 neighboring control points such that "folding" does not occur.
getControls() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: get controls
getControls() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
getControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Gets control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Required by the parent super class, do nothing.
getControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: get controls
getControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Get control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Get control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameBase: Gets the control widgets for the frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Get control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Get control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Gets the control widgets for the frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Gets the control widgets for the frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get control widgets (toolbars, sliders) for the image frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Gets control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Placeholder.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Gets control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Gets control widgets for frame.
getControls() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets reference to control widgets for frame.
getConverged() - Method in class gov.nih.mipav.model.algorithms.LsqFit
getConversionFactor(int, int) - Static method in class gov.nih.mipav.model.structures.ModelImage
getConversionFactor(FileInfoBase.Unit) - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getConversionLensDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getConversionProgram() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getConverter() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelManipulator: Returns the converter that converts a pixel to the element accepted by this manipulators action (and the element back to the pixel).
getConverterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getConvertStartLocationsToDICOM(double[], double[][], boolean[], int, double[]) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Converts from the minc start location to the dicom start locations
getConvertStartLocationsToDICOM(int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Accessor that gets the "start" variable values, adjusted so that [0] holds the image x axis value, [1] the image y axis value, and [2] the image z axis value.
getConvFactor() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getConvolve() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor method for the m_bConvolve data memeber.
getCoordCode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Returns type of x, y, z coordinates.
getCoordCode2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Returns type of x, y, z coordinates 2.
getCoordinate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The red target sign's x cylinder transform group, which regards as the center of the burning point.
getCoordinate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Get the coordinate vector.
getCoordinate(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Parse the coordinate point value from the section.
getCoordinateIndices() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the array of connectivity among the vertices which define the triangles of the mesh.
getCoordinates() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the array of coordinates at each vertex.
getCoordinates(float[]) - Method in class gov.nih.mipav.model.structures.VOIPoint: This method gets the coordinates of the point
getCoordinateView() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Returns the coordinate view, which is the range of x and y coordinates visible in the coordinate system.
getCoordMapX() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Access functions for Mapping from texture coordinates to model coordinates and vice versa: getCoordMapX:
getCoordMapY() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: getCoordMapY:
getCoordMapZ() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: getCoordMapZ:
getCoords(Vector3f, Vector3f, float, VertexBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Sets up the line annotations.
getCoordsLine(float[], float[], double, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates the screen coordinates for the VOILine tickmarks.
getCoordsProtractor(float[], float[], double, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the screen location for the angle and length display for the VOIProtractor.
getCoordSysArea() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
getCopies(Point3f[], Vector3f[], Color4f[], TexCoord3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Copies the components of a ModelTriangleMesh into the parameters.
getCopyrightNoticeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCopyVOINames() - Method in class gov.nih.mipav.view.ViewUserInterface
getCopyVOIs() - Method in class gov.nih.mipav.view.ViewUserInterface
getCORFileList(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Only for FreeSurfer COR volume files Looks in the image directory and returns all images with the same root up to the hyphen, sorted in lexicographical order.
getCorners() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
getCornerScore(int[], int) - Method in class gov.nih.mipav.model.algorithms.AgastDetector5_8
getCornerScore(int[], int) - Method in class gov.nih.mipav.model.algorithms.OastDetector9_16
getCornerValue(OctNode, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getCornerValueAndNormal(OctNode, int, float[], Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getCoronalComponentSlice() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the y position of the slice.
getCorrectedGradients() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
getCorrectionFactor() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Returns the amount of correction which should be applied to the z-direction sigma (assuming that correction is requested).
getCorrectionFactor(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Returns the amount of correction which should be applied to the z-direction sigma (assuming that correction is requested).
getCorrectionFactorString() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Returns a string indicating the z-direction sigma after applying the resolution correction factor.
getCorrespondingPoint(float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
getCorrespondingPoint(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
getCORSuffixFrom(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Only used for COR volume files with hyphen in name Breaks the filename into basename and suffix, then returns the suffix.
getCost() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Returns the cost of the best transformation.
getCost() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the cost of the best transformation.
getCost() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getCost() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
getCost() - Method in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Returns the cost.
getCost() - Method in class gov.nih.mipav.model.algorithms.Vectornd
getCost() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Get the current accumulated cost.
getCost() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getCost(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Returns the cost for the transformation vector.
getCost(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Returns the cost for the transformation vector.
getCost(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Returns the cost for the transformation vector.
getCostCalled() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Accessor that returns how many times the cost function has been called.
getCostCalled() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Accessor that returns how many times the cost function has been called.
getCostChoice() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the choice of cost function.
getCostFunction() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
getCostFunction() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
getCostFunction() - Method in interface gov.nih.mipav.model.algorithms.AlgorithmOptimizeFunctionBase
getCostFunction() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction
getCostFunction() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer.CostFunction
getCostFunction() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction
GetCostFunctionForResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
getCosts() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: accessor for costs.
getCosts() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: accessor for costs.
getCount(JComponent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
getCounter() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getCounter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getCounter() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getCountryDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getCountryOrPrimaryLocationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCov_reg_type(int) - Method in class gov.nih.mipav.model.algorithms.libdt
getCov_type(int) - Method in class gov.nih.mipav.model.algorithms.libdt
getCovariance() - Method in class gov.nih.mipav.model.algorithms.LsqFit
GetCovarianceBlock(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
GetCovarianceBlockAndCompare(double[], double[], boolean, CeresSolver2.CovarianceImpl, double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GetCovarianceBlockInTangentOrAmbientSpace(double[], double[], boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
GetCovarianceBlockInTangentSpace(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
GetCovarianceMatrix(Vector<double[]>, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
GetCovarianceMatrixInTangentOrAmbientSpace(Vector<double[]>, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
GetCovarianceMatrixInTangentSpace(Vector<double[]>, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
getCPhase() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getCreditDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getCrosshairPoint() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Returns the current cross hair position in screen coordinates.
getCsaImageAcquisitionMatrixText() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageBandwidthPerPixelPhaseEncode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageEchoColumnPosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageEchoLinePosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageEchoPartitionPosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageGSWDDataType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageICE_Dims() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageImaAbsTablePosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageImaCoilString() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageImaPATModeText() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageImaRelTablePosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageMeasuredFourierLines() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageMosaicRefAcqTimes() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageMultistepIndex() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageNonPlanarImage() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageNumberOfImagesInMosaic() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImagePhaseEncodingDirectionPositive() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageProtocolSliceNumber() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageRealDwellTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageRFSWDDataType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageSequenceMask() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageSliceMeasurementDuration() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageSliceNormalVector() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageSlicePosition_PCS() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageTimeAfterStart() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaImageUsedChannelMask() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesAbsTablePosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesB1rms() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesB1rmsSupervision() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesCoilForGradient() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesCoilForGradient2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesCoilId() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesCoilString() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesdBdt_limit() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesdBdt_max() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesdBdt_thresh() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesFlowCompensation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesGradientDelayTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesGradientMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesIsocentered() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesLongModelName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMiscSequenceParam() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolacFlowComp0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoladFlipAngleDegree0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolalTE0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolalTR0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnbValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnflFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnlRxChannel() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlElementSelected() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlRxChannelConnected() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDlCoilCopy() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtCoilID() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtElement() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0iUsedRFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSauiNmbrOfNibbles() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSaulPlugId() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolasCoilSelectMeas0tNucleus() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoldAveragesDouble() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoldRefSNR() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoldRefSNR_VOI() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollAverages() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollCombinedEchoes() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollContrasts() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollParadigmPeriodicity() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollProtID() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollRepetitions() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollScanTimeSec() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollTOM() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocollTotalScanTimeSec() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedInPlaneRot() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedPhaseFOV() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedReadoutFOV() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreProtRelated() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjMDSMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjProtID() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjRFMapMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjShimMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjTableTolerance() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjVolumeValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAdjDatauiAdjWatSupMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAngiolDynamicReconMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAngiolTemporalInterpolation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAngioucPCFlowMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAngioucTOFInflow() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAslulMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsAutoAligndAAMatrix() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsBladeParadBladeCoverage() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsBladeParaucMotionCorr() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsDiffusionulMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsDistortionCorrFilterucMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsEFISPECbEFIDataValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglEchoTrainDuration() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglEPIFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglSegments() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglShots() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglSliceTurboFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImaginglTurboFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsFastImagingucSegmentationMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbB0CompensationValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbCrossTermCompensationValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbDelayValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbEddyCompensationValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbOffsetValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbSensitivityValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECbShimCurrentValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECflGSWDMinRiseTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityX() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityY() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityZ() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClDelayX() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClDelayY() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClDelayZ() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetX() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetY() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetZ() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant4() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGRADSPECucMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGroupArrayanMember() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGroupArrayasGroup0nSize() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGroupArraylSize() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGroupArraysPSatdGap() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsGroupArraysPSatdThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacedAngioDynCentralRegionA() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacedAngioDynSamplingDensityB() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacedPhaseResolution() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacedSeqPhasePartialFourierForSNR() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacedSliceResolution() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelBaseResolution() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelImagesPerSlab() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelLinesPerShot() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelPartitions() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelPhaseEncodingLines() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelRadialInterleavesPerImage() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpacelRadialViews() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucAsymmetricEchoMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucAveragingMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucDimension() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucMultiSliceMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucPhasePartialFourier() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucPOCS() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucSlicePartialFourier() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucTrajectory() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceucViewSharing() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsKSpaceunReordering() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSdMdsRangeExtension() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSlmdsLinesPerSegment() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSlTableSpeedNumerator() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSsMdsEndPosSBCS_mmdTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSulMdsModeMask() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSulMdsReconMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsMDSulMdsVariableResolution() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsNavigatorParalBreathHoldMeas() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsNavigatorParalRespComp() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsParametricMappingucParametricMap() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatlAccelFact3D() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatlAccelFactPE() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatlRefLinesPE() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatucPATMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatucRefScanMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPatucTPatAverageAllFrames() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglMethod1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglMethod2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglPhases() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglRetroGatedImages() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglSignal1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImaginglSignal2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlArryhythmiaDetection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOffThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOnThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerIntervals() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerPulses() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerWindow() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlArryhythmiaDetection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOffThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOnThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerIntervals() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerPulses() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerWindow() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucFlowSenMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselArryhythmiaDetection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOffThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOnThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerIntervals() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerPulses() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerWindow() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioRespdGatingRatio() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGatePhase() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGateThreshold() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodFlipAngle() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesdIRPulseThicknessFactor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesdT2PrepDuration() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucFatSat() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucFatSatMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucInversion() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucSatRecovery() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucT2Prep() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucTIScout() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsPrepPulsesucWaterSat() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflGMax() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflNominalB0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflRiseTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfolMaximumNofRxReceiverChannels() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfotBaselineString() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsProtConsistencyInfotSystemType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRawFilterlSlope_256() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRawFilterucMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRawFilterucOn() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0dThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRSatArraylSize() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRXSPECalDwellTime0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRXSPECbGainValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsRXSPEClGain() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayanAsc() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayanPos() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdInPlaneRot() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdPhaseFOV() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdReadoutFOV() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondCor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondSag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondTra() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArraylConc() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArraylSize() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArraysTSatdThickness() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSliceArrayucMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalAutoRefScanNo() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalDecouplingType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalExcitationType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalNOEType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalPhaseCyclingType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalPhaseEncodingType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalRFExcitationBandwidth() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalSpecAppl() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParalSpectralSuppression() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsSpecParaucRemoveOversampling() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnbAmplitudeValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnflAmplitude() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEntName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bAmplitudeCorrectionValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bFrequencyValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bReferenceAmplitudeValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bRFPAIndexValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flAmplitudeCorrection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flReferenceAmplitude() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0lFrequency() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0tNucleus() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bAmplitudeCorrectionValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bFrequencyValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bReferenceAmplitudeValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bRFPAIndexValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1flAmplitudeCorrection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1lRFPAIndex() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECbKDynValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipHigh() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipLow() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMax() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMin() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseClip() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseMax() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPEClBCExcitationMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPEClBCSeqExcitationMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPEClNoOfTraPulses() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECucBCExcitationModeValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECucExcitMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECucRFPulseType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsTXSPECucSimultaneousExcitation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsWiPMemBlockadFree() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsWiPMemBlockalFree() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolsWiPMemBlocktFree() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltdefaultEVAProt() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltProtocolName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltReferenceImage0() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltReferenceImage1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltReferenceImage2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocoltSequenceFileName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucAAMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucAARefMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucAARegionMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucAutoAlignInit() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucBold3dPace() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucBOLDParadigmArray() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucCineMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucCoilCombineMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucDisableChangeStoreImages() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucDixon() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucDixonSaveOriginal() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucEnableIntro() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucEnableNoiseAdjust() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucFlipAngleMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucForcePositioningOnNDIS() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucInteractiveRealtime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucInternalTablePosValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucOneSeriesForAllMeas() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucPHAPSMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucReadOutMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucReconstructionMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucScanRegionPosValid() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucSequenceType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucTablePositioningMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolucWaitForPrepareCompletion() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolulVersionRfWatchdogMask() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrPhoenixProtocolWaitForUserStart() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesMrProtocolVersion() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesNumberOfPrescans() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesOperation_mode_flag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesPATModeText() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesPatReinPattern() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesPhaseGradientAmplitude() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesPositivePCSDirections() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesProtocolChangeHistory() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesReadoutGradientAmplitude() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesReadoutOS() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesRelTablePosition() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesRFSWDMostCriticalAspect() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesRFSWDOperationMode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesRfWatchdogMask() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSARMostCriticalAspect() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSed() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSelectionGradientAmplitude() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSequenceFileOwner() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSliceArrayConcatenations() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSliceResolution() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesStim_faktor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesStim_lim() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesStim_max_online() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesStim_mon_mode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesSW_korr_faktor() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriest_puls_max() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesTablePositionOrigin() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesTalesReferencePower() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaSeriesTransmitterCalibration() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCsaStim_max_ges_norm_online() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getCurrentChannelInfo() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
getCurrentDataset() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentExperiment() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentExperimenter() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentFilter() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
getCurrentGroup() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentImage() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentInclude() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getCurrentIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getCurrentInstrument() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentLightSource() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
getCurrentLineNumber() - Method in class gov.nih.mipav.model.scripting.ParserEngine: Returns the line number of the last line parsed by the parser engine.
getCurrentNMI() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getCurrentObjective() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
getCurrentOrErrorDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
getCurrentOrientation() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getCurrentOTF() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
getCurrentParameter() - Method in class gov.nih.mipav.model.file.XMLPSet: Returns the current parameter to be modified.
getCurrentPlate() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentPositionLabels() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Get the last point that the position labels got set to.
getCurrentProject() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentPSet() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets current parameter set.
getCurrentRowOrder(TableSorter) - Static method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
getCurrentScreen() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
getCurrentSurface() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Returns the SurfaceLink object for the current surface.
getCurrentTransform() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
getCurrentTSlice() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the current tslice.
getCurrentUpdate() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
getCurrentVal(double[]) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
getCurrentVOI() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get's the VOILink for the current VOI.
getCursorMode() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the VOI mode.
getCurSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the current highlight surface.
getCurTreatment() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the treatment info that matches the currently selected target surface.
getCurvatureWeight() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the curvature weight 'c'.
getCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map.curvePair
getCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair
getCurve(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
getCurvePosition(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Access the curve which defines the positions of points along the path in 3D that is associated with this node.
getCurves() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the curves making up the VOI.
getCurvesPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
getCurveType() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the curve type.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Get the curvature flow image.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Get the curvature flow image.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Get the curvature flow image.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Get the curvature flow image.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Get the curvature flow image.
getCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Get the curvature flow image.
getCustomLUTList() - Static method in class gov.nih.mipav.view.JPanelHistogram: Creates a Vector or LUT names representing different color look-up tables.
getCustomLUTList() - Static method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.
getCustomRenderedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getCustomSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getCut(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getCylinder() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getCylinderCoordinates() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getCylinderCoordinates() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getCylinderXTG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the red target sign x cylinder transform group.
getD() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
getD() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Return the block diagonal eigenvalue matrix
getDashedStroke() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Builds the dashed stroke used to render the minor talairach grid lines.
getData() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint
getData() - Method in interface gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.IMetadataProvider
getData() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getData() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
getData() - Method in class gov.nih.mipav.model.algorithms.CVODES.NVector
getData() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
getData() - Method in class gov.nih.mipav.model.GaussianKernel
getData() - Method in interface gov.nih.mipav.model.Kernel
getData() - Static method in class gov.nih.mipav.view.Preferences: Gets all the text printed to the data panel.
getData() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Gets text area which data tab prints to.
getData(ModelSurfaceTopology.Edge) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Get the attribute data associated with the specified edge.
getData(ModelSurfaceTopology.Triangle) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Get the attribute data associated with the specified triangle.
getData(ModelSurfaceTopology.Vertex) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Get the attribute data associated with the specified vertex.
getDataCompression() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDataDescription() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDataDimension() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
getDataDimension() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
getDataEncode() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDataFileName() - Method in class gov.nih.mipav.model.file.FileImageXML: Accessor that returns the array of data file names
getDataFileName() - Method in class gov.nih.mipav.model.file.FileRaw: Accessor that returns the array of data file names
getDataLength() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Returns the size of the data held in this sequence in number of bytes, including the number of bytes required to delimit each item.
getDataLength() - Method in class gov.nih.mipav.model.file.FileDicomTag: Calculates the number of bytes that the data (the object value) will take to be stored.
getDataLength(boolean) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Calculates the number of bytes that the data (the object value) takes to be stored.
getDataPrecisionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getDataSet(int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a set of DICOM tags from a DICOM sequence item, ending with the data-element end tag FFFE,E00D.
getDataSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get total buffer length.
getDataType() - Method in class gov.nih.mipav.model.file.FileBase: Gets datatype
getDataType() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns data type.
getDataType() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getDataType() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the image buffer type as an enum.
getDataType() - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Accessor that returns the data type.
getDataType() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Accessor that returns the data type.
getDataType() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Accessor that returns the data type.
getDataType() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the data type.
getDataType(int) - Static method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
getDataTypeCode() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to coded datatype value.
getDataTypeCode() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to coded datatype value.
getDataTypeCode() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to coded datatype value.
getDataTypeFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the image data type associated with a string.
getDataTypeName() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to the 10 character string of data-type.
getDataTypeName() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to the 10 character string of data-type.
getDataTypeName() - Method in class gov.nih.mipav.model.file.FileInfoSPM: Accessor to the 10 character string of data-type.
getDate() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDate() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's date.
getDate(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a java.util.Date.
getDate(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory
getDate(int, String, TimeZone) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a java.util.Date.
getDate(int, TimeZone) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a java.util.Date.
getDateCreated() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Parses the Date Created tag and the Time Created tag to obtain a single Date object representing the date and time when this image was captured.
getDateCreatedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getDateDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDateDigitized() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was digitized.
getDateDigitized(TimeZone) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was digitized.
getDateModified() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was modified.
getDateModified(TimeZone) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was modified.
getDateOriginal() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was captured.
getDateOriginal(TimeZone) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory: Parses the date/time tag, the subsecond tag and the time offset tag to obtain a single Date object with milliseconds representing the date and time when this image was captured.
getDateSent() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Parses the Date Sent tag and the Time Sent tag to obtain a single Date object representing the date and time when the service sent this image.
getDateSentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDateTimeUTCDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getDays() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
getDaysBefore(Calendar, int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Returns the new date of num days before date.
getDBdt() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDBname() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to DB_name.
getDBname() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to DB_name.
getDBname() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to DB_name.
getDCIns() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getDCIns() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getDcmmeta_affine() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDcmmeta_reorient_transform() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDcmmeta_shape() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDcmmeta_slice_dim() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDcmmeta_version() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getDctEncodeVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
getDDType() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Gets the index for this VR.
getDebug() - Static method in class gov.nih.mipav.view.Preferences: Gets all the text printed to the debug panel.
getDebug() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Gets text area which debug tab prints to.
getDebugPreferences() - Static method in class gov.nih.mipav.view.Preferences: Gets the LogConfiguration for logging categories (minor, algorithm, fileIO, comms, scripting).
getDecayCorrected() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDecimalRational(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getDecimatedFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getDecimatedIBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getDecimatedPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getDecimatedVBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getDecoder(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS
getDecoder(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff
getDecryptedIntArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory: decryption algorithm adapted from exiftool
getDecSwitchPositionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getDefaultButtonSize() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Returns the default size used for most text buttons.
getDefaultCentroids(ModelImage, int, boolean, BitSet, boolean, float) - Static method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
getDefaultDirectory() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Accessor that gets the default directory.
getDefaultDirectory() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get directory location of last file access.
getDefaultDisplay() - Static method in class gov.nih.mipav.view.Preferences: Returns how pixel values of images are displayed in terms or brightness values and possible colors.
getDefaultExtension() - Method in class gov.nih.mipav.model.file.FileTypeInfo: Returns the primary extension which should be used for this file type (i.e., '.nii' for NIFTI).
getDefaultFrameRate() - Static method in class gov.nih.mipav.view.Preferences: Gets the default frame rate used in saving AVI movies.
getDefaultHostKey() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get the default chat/file server host key.
getDefaultLevel() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getDefaultLUTa() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the default LUTa for the frame.
getDefaultLUTb() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the default LUTb for the frame.
getDefaultMax(FileInfoBase) - Static method in class gov.nih.mipav.model.file.FileMinc: Return the default volume maximum for different file data types.
getDefaultMaxDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the default maximum point for the domain (previously calculated).
getDefaultMaxRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the default maximum point for the range (previously calculated).
getDefaultMin(FileInfoBase) - Static method in class gov.nih.mipav.model.file.FileMinc: Return the default volume minimum for different file data types.
getDefaultMinDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the default minimum point for the domain (previously calculated).
getDefaultMinRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the default minimum point for the range (previously calculated).
getDefaultPluginDirectory() - Static method in class gov.nih.mipav.plugins.PluginUtil
getDefaultScriptDirectory() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get directory location of script files.
getDefaultServerKey() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get default DICOM image server key.
getDefaultShape() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Return access to the default shape to use for rendering all subsequent annotated items.
getDefaultShortcutTable() - Static method in class gov.nih.mipav.view.Preferences: Gets the Default Hashtable used to store the shortcut keystrokes and commands.
getDefaultStorageDir() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Returns the default storage directory for the received dicom files.
getDefaultStorageKey() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get default DICOM image storage location.
getDefaultWindow() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getDeformationField() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm
getDeformationField() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
getDeformationField() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getDeformedSubject() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
getDeformedSubject() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getDegree() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
getDegreesMinutesSecondsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getDelimiter() - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile
getDenominator() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the denominator.
getDependentVarId() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getDepth(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
getDepth(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
getDerivative() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: return new instance which is the derivative of this instance.
getDescription() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to the current analyze-image description.
getDescription() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to the current analyze-image description.
getDescription() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to the current SiemensText-image description.
getDescription() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to the current SPM-image description.
getDescription() - Method in class gov.nih.mipav.model.file.FileTypeInfo: Retrieve the description for this file type.
getDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType
getDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Get a description of the tag's value, considering enumerated values and units.
getDescription() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's description.
getDescription() - Method in class gov.nih.mipav.model.file.XMLPSet: Get the parameter set description.
getDescription() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getDescription() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Gets the set display's description.
getDescription() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getDescription() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getDescription() - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: FileFilter override.
getDescription() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Get description associated with this light.
getDescription() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the description associated with the annotated point.
getDescription() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the description associated with the annotated point.
getDescription() - Method in class gov.nih.mipav.view.ViewImageFileFilter: One of the overrides to FileFilter.
getDescription(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: Gets the description of a given integer hash index.
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Provides a description of a tag's value using the descriptor set by setDescriptor(Descriptor).
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Descriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Descriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDescriptor
getDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor: Returns a descriptive value of the specified tag for this image.
getDescription(int) - Static method in class gov.nih.mipav.view.ViewImageFileFilter: Returns the description of the given file filter.
getDescriptionLong() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getDescriptionLong() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getDescriptions() - Static method in class gov.nih.mipav.view.ViewImageFileFilter: Returns the list of descriptions.
getDestImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Accessor to return the destination image
getDestination() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
getDetectedFaces() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory
getDetectedFacesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getDetectorHeadNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDeviceTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getDHT(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Get the Huffman table.
getDiagnosis() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get diagnosis for subject (optional).
getDiagonal(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Get a diagonal entry for the quadric surface.
getDialogActionString(Class<? extends JDialogScriptableBase>) - Static method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Extracts the scripting action string which should be used for a given class.
getDialogName() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Returns the name of the dialog (e.g.
getDiameter(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getDICOMBrowserTableConfiguration() - Static method in class gov.nih.mipav.view.Preferences: Gets the user-configured columns that indicate the DICOM tags that are displayed in the DICOM browser table.
getDICOMCatcher() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get the DICOM receiver.
getDICOMQueryFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get the DICOM query frame.
getDICOMSaveDictionary() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get the default DICOM Save Dictionary (which tags to save into XML header.
getDicomSaveList(FileInfoDicom, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Returns a list of tags that are a subset of the DICOM dictionary.
getDicomTable() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Retrieves the dicom converted tag hashtable
getDicomTagTable() - Static method in class gov.nih.mipav.model.file.DicomDictionary: Returns a reference to the DICOM Hashtable.
getDicomTagTable(boolean) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Returns a reference to the DICOM Hashtable.
getDicomValue(String) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Get the value from the minc info based on a given dicom tag id.
getDicomValueAsString(FileDicomTag) - Static method in class gov.nih.mipav.model.file.FileMinc: Returns the value of a dicom tag, represented as a string.
getDiffuse() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query current optional diffuse color for vertex.
getDiffusion() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDiffusionAnisotropyType() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDiffusionBFactor() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDiffusionBValueNumber() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDiffVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the volume difference btw the tumor surface and burning sphere packings.
getDiffVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the volume difference btw tumor surface and burning sphere packings.
getDiffVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the diff volume of the current treatment.
getDigitalDateCreated() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Parses the Digital Date Created tag and the Digital Time Created tag to obtain a single Date object representing the date and time when the digital representation of this image was created.
getDigitalDateCreatedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDigitalTimeCreatedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getDigitalZoomCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getDigitalZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getDigitalZoomOnDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getDigitalZoomRatioDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getDigitNumber() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the number of digits to use when appending to the multi file save (i.e., if you want test00.tif to be the first file, 0 is the start number and 2 is the digit number).
getDilationSize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the dilation size for dilating the voxelized brain surface obtained by rasterizing the triangle mesh.
getDilationSize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Get the dilation size for dilating the voxelized object surface obtained by rasterizing the triangle mesh.
getDim() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to the dim_un0.
getDim() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to the dim_un0.
getDim() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getDim() - Method in class gov.nih.mipav.model.structures.TransMatrix: Return dimension passed to constructor.
getDim() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Return dimension passed to constructor.
getDim() - Method in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode
getDimArray() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Gets the array with the dimension information.
getDimElem(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Accessor that returns the dimension element at the indicated index in the dimension array.
getDimension() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase
getDimension() - Method in class gov.nih.mipav.model.algorithms.Vectornd
getDimensionNode() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Returns the dimension node (only 1 exists at fileinfo[0] position
getDimensionNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getDiognostician() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getDirection() - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
getDirection() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query the current direction of the light.
getDirection() - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: DOCUMENT ME!
getDirection() - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
getDirection() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: Get the light direction.
getDirection() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Get the light direction.
getDirective(int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getDirectories() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Returns an iterable set of the MetadataExtractor.Directory instances contained in this metadata collection.
getDirectoriesOfType(Class<T>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata
getDirectory() - Method in class gov.nih.mipav.view.ViewDirectoryChooser: Displays a dialog to select a directory, with the script directory as the default.
getDirectory() - Method in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
getDirectory() - Method in class gov.nih.mipav.view.ViewFileTreeNode: The directory of the FileNode, as taken from its File.
getDirectory() - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Get the directory containg the file.
getDirectoryCount() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Returns the count of directories in this metadata collection.
getDirectoryName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Get the name of the com.drew.metadata.Directory in which the tag exists, such as Exif, GPS or Interoperability.
getDirFileInfo() - Method in class gov.nih.mipav.model.file.FileDicom: Accessor that returns the DICOMDIR sequence file info.
getDirUIDs(File) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store
getDiscoverableActionList() - Static method in class gov.nih.mipav.view.ViewUserInterface
getDiscoverableActionList(String) - Static method in class gov.nih.mipav.view.ViewUserInterface
getDisplay() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Gets whether the surface should be displayed.
getDisplay() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink: Gets whether or not the VOI should be displayed.
getDisplay() - Method in class gov.nih.mipav.model.structures.VOIText
getDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
GetDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Get the object display either on/off.
getDisplayApertureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getDisplayArb() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
getDisplayDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the diaplay dialog.
getDisplayDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the diaplay dialog.
getDisplayEye() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
getDisplayFuzzy() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that returns displayFuzzy.
getDisplayFuzzy() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder.
getDisplayFuzzy() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor that returns displayFuzzy.
getDisplayInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
getDisplayList() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Called by the doPick() method in Navigation behavior.
getDisplayMode() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the display mode.
getDisplayMode() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the LUT panel current display mode.
getDisplayMode() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Accessor that indicates which image is active:
getDisplayMode() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns displayMode.
getDisplayMode3D() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the current volume display mode.
getDisplayMode3D() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the current volume display mode.
getDisplayName() - Method in class gov.nih.mipav.view.ShortCutted: Formats shortcut's name for display.
getDisplayOptions() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
GetDisplayTract() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Returns if there are tracts to display.
getDisplayTransform() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the display transform flag.
getDisplayValue() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: this editor's okay editable value.
getDisplayValueForInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: used when editing images associated with a project.
getDisplayValueForParam() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
getDisposalMethod() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory
getDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityItem: DOCUMENT ME!
getDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexItem: DOCUMENT ME!
getDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensity
getDistance() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Get the current accumulated distance.
getDistance(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Vertex-vertex distance measured along the shortest edge-path connecting the two vertices.
getDistance(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Vertex-vertex distance measured along the shortest edge-path connecting the two vertices.
getDistanceInMeters(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getDistanceMap() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: access to the distance map - stored in map from MjEdgeKey to Float.
getDistanceNeighbors27(float[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill an array of distances to the 26-connected neighbors for any given sample where the distances are the Euclidean distances in sample coordinates.
getDistortionCorrection2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getDistortionCorrectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getDistortionCorrectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionCorrectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getDistortionParam02Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionParam04Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionParam08Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionParam09Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionParam11Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
getDistortionScaleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
GetDivergence(int[], Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getDOB() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get subject's date of birth (optional).
getDOF() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getDOF() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the degrees of freedom.
getDoGeometricCenterLabel() - Method in class gov.nih.mipav.model.structures.VOIBase: If doGeometricCenterLabel = true and active == false and closed = true, execute drawGeometricCenterLabel when in drawSelf
getDomainMax() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getDomainMin() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getDomainTolerance() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
GetDotProduct(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getDouble(boolean) - Method in class gov.nih.mipav.model.algorithms.libdt: Reads eight unsigned bytes from file.
getDouble(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads eight unsigned bytes from file.
getDouble(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads eight unsigned bytes from file.
getDouble(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a double, if possible.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a double value at position in the data array.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the acquire data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in double format.
getDouble(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: The interpolated value from the data array.ersion of get that does NOT perform bounds checking.
getDouble(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getDouble(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getDouble(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Double or an array of Double as needed by the tag's VM.
getDouble(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getDouble(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getDouble(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the double value of one of the parameters from the table.
getDouble(StringTokenizer) - Static method in class gov.nih.mipav.view.MipavUtil: Get a double value from a string tokenizer.
getDouble64() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getDouble64(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getDoubleArrayConverter() - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
getDoubleBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getDoubleBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the double buffer (image).
getDoubleObject(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a Double.
getDoubletArrayElementSpliterator(Spliterator<? extends ContourPlot.PixelBase>) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator: Example implementation of a PixelConvertingSpliterator<double[]>.
getDoubleTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getDoubleValOrAsciiVal(String) - Method in class gov.nih.mipav.model.file.FileIO
getDoubleValueOfKey(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
getDownSampleResolutions() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
getDPIScale() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getDrawingContext() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
getDrawVOIflag() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
getDRI(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Get DRI part of header.
getDriveModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 2 or 3 numbers: 1.
getDRRNorm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the normalization factor for DDR rendering mode.
getDTI() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Return the DTI Image.
getDTIimage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getDTIParameters() - Method in class gov.nih.mipav.model.file.FileBRUKER
getDTIParameters() - Method in class gov.nih.mipav.model.structures.ModelImage
getDuration() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: We could have derived the duration from the number of frames and frame rate.
getDuration() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
getDWI() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
getDynamicRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getDynamicRangeOptimizerDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getDynamicRangeSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getDynamicScanBeginTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDynamicScanNumber() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getDynamicStudyGeneral() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getEast() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getEasyShootingModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getEccentricity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the eccentricity of the VOI: 1 = line, 0 = circle; return eccentricity of the VOI.
getEchoNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEchoNumber() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getEchoNumbers() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getEchoTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getEchoTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getEchoTrainLength() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEchoTrainLength() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getEdgeJunctions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
GetEdgeLoops(Vector<Pair<Long, Long>>, Vector<Vector<Pair<Long, Long>>>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getEdgeMap() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Access the hash map of edges.
getEdgePoints(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility: Finds the points of the given BitSet which has at least one neighbor (not including diagonals) not in the BitSet.
getEdgeQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: The number of edges currently in the table.
getEdges() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
getEdges() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getEigenValueImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Eigen Value Image.
getEigenValueImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
getEigenVectorImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Eigen Vector Image.
getEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
getElapsedStudyDuration() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getElapsedTime() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns the elapsed time in seconds.
getElement() - Method in class gov.nih.mipav.model.file.FileDicomKey: returns only the element portion of the DICOM key.
getElement() - Method in class gov.nih.mipav.model.file.FileDicomTag: Accessor that returns the element word of the tag (hex).
getElement(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: Gets the element number of a given integer hash index.
getElement(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: Get the element value at the specified row,col.
getElementAt(int) - Method in class gov.nih.mipav.model.structures.IntVector: Gets a value from the array.
getElementNumber() - Method in class gov.nih.mipav.model.file.FileDicomKey: Returns the element portion of a DICOM key as an integer.
getEllipseCurves() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getelts(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
getElts() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getElts(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getEltsLength() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getEmail() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Gets email.
getEmailDefault() - Static method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
getEmbeddedPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
getEnable() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Access on when picking with the mouse is enabled.
getEnable() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
getEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Access on when picking with the mouse is enabled.
getEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Return the sculpt enabled status.
getEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns whether the ModelTriangleMesh is to be displayed with the ModelImage data as a texture or not.
getEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Returns true if the user has enabled the paint brush.
getEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Returns true if the user has enabled the paint brush.
getEncodedTextDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getEnd() - Method in class gov.nih.mipav.view.Rubberband: Returns the end point of the rubberband.
getEndCalendar() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets all the ending date of the patient's study from the all three comboboxes.
getEndDay() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the ending day of the study in the endDayBox combobox.
getEndianess() - Method in class gov.nih.mipav.model.file.FileInfoBase: Descibes file endianess.
getEndianess() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getEndianess() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the endianess.
getEndianessFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the endianess associated with a string.
getEndLines(Vector3f, Vector3f, VertexBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Sets up the line annotations for the end-points of the line (arrows).
getEndLines2(Vector3f, Vector3f, VertexBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Sets up the protractor annotations for the end-points of the protractor (arrows).
getEndLinesLine(float[], float[], int, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the inverted-arrow coordinates for the VOILine tickmark display.
getEndLinesProtractor(float[], float[], int, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates and returns the arrow-head coordinates for the VOIProtractor tickmark display.
getEndMonth() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the ending month of the study in the endMonthBox combobox.
getEndPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the end point world coordinate vector.
getEndPointCoordinate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the end point transform.
getEndRange() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the starting range of pixels.
getEndSlice() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the slice to stop saving at.
getEndTime() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the time slice to stop saving at.
getEndX() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEndY() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEndYear() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the ending year of the study in the endYearBox combobox.
getEndZ() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEnergy(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
getEnergy(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
getEnergyWindow() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getEnergyWindowLowerLevel() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getEnergyWindowsNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getEnergyWindowUpperLevel() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getEnhancedNumSlices() - Method in class gov.nih.mipav.model.file.FileDicom
getEnhancedNumVolumes() - Method in class gov.nih.mipav.model.file.FileDicom
getEnhancedTagTables() - Method in class gov.nih.mipav.model.file.FileDicom
getEnhancementDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getEntropy() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getEntropy(int[], double) - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Standard entropy calculation.
getEntry() - Method in class gov.nih.mipav.model.provenance.ProvenanceChangeEvent: Retrieves the provenance entry
getEntry(Class) - Method in class gov.nih.mipav.plugins.ManifestFile: Gets the dependents of class c.
getEntryPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the entry ponit world coordinate.
getEntryPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the entry pont transform group.
getEntrySet() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults
getEpochTimeDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getEps() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
getEQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getEquation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
getEquipmentName() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get the scan Equipment Model Name associated with image.
getEquipmentVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getError() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Return the current error measure computeas the root mean squared error.
getError() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Return the current error measure between the target image and the registered source image.
getError() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Return the current error measure between the target image and the registered source image.
getError() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Return the current error measure between the target image and the registered source image.
getError() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Return the current error measure between the target image and the registered source image.
getError() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Accessor that returns error String if an error has occured.
getError() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
getErrorComponent() - Method in class gov.nih.mipav.view.JPanelEdit: method returns the Component (visual GUI interface) that has an error making the panel value in an attempt to allow the user the chance to correct the problem.
getErrorCount() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the count of error messages in this directory.
getErrorDeriv(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Computes the derivative of the error function at a control point by approximating with finite differences where the control point is moved small amounts in each orthgonal direction.
getErrorDeriv(int, int, Vector2f) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Computes the derivative of the error function at a control point by approximating with finite differences where the control point is moved small amounts in each orthgonal direction.
getErrorMessage() - Method in class gov.nih.mipav.model.algorithms.ODE
getErrorMessage() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getErrors() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Used to iterate over any error messages contained in this directory.
getErrorStatus() - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
getErrorStatus() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
getErrorString() - Method in class gov.nih.mipav.view.JPanelEdit: method returns the String describing an error making the panel value.
getEsize() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getEValueimage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getEVDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getEventType() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getEVimage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getExamName() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getExamType() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getExceptions() - Static method in class gov.nih.mipav.view.ViewUserInterface
getExcitationsNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getExcluder() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
getExifImageHeightDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExifImageWidthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExifVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExifVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getExitCode() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Returns the exit code of the class.
getExitCode() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Returns the exit code of the class.
getExitCode() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Returns the exit code of the class.
getExitCode() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Returns the exit code of the class.
getExitStatus() - Method in class gov.nih.mipav.model.algorithms.NESolve
getExitStatus() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
getExitStatus() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
getExitStatus() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
getExperimentDate() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current experiment date string.
getExperimentDate() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current experiment date string.
getExperimentDate() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current experiment date string.
getExperimentTime() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current experiment time string.
getExperimentTime() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current experiment time string.
getExperimentTime() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current experiment time string.
getExpirationDate() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Parses the Expiration Date tag and the Expiration Time tag to obtain a single Date object representing that this image should not used after this date and time.
getExpirationDateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getExpirationTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getExponent() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: Get the spot cone exponent.
getExposureBiasDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExposureCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getExposureDifferenceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDescriptor
getExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getExposureProgramDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExposureShiftDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getExposureTime() - Method in class gov.nih.mipav.model.file.FileInfoBase
getExposureTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExposureTuningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getExrAutoDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getExrModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
GetExt(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Returns the extension of a file name.
getExtendedDescription() - Method in class gov.nih.mipav.model.file.FileTypeInfo: Return the description and file extension list for this file type.
getExtendedWBDetectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getExtenderDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getExtension() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the VOI extension.
getExtension(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Returns the extension of the file name (including the dot), if file name does not have extension, then return empty string.
getExtensionCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory
getExtensionCodeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDescriptor
getExtensionList() - Method in class gov.nih.mipav.model.file.FileTypeInfo: Retrieve the list of extensions supported by this file type.
getExtensionsString() - Method in class gov.nih.mipav.model.file.FileTypeInfo: Retrieve a string listing all of the extensions supported by this file type, separated by EXT_DELIM.
getExtention() - Method in enum gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType
getExtents() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the dimensionality of the image.
getExtents() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getExtents() - Method in class gov.nih.mipav.model.GaussianKernel
getExtents() - Method in interface gov.nih.mipav.model.Kernel
getExtents() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the extents of the image.
getExtents() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getExtents() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the extents.
getExtents() - Method in class gov.nih.mipav.view.PatientSlice: Returns the local image extents for the PatientSlice orientation.
getExtents() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Query information which describes the bounds of the volume.
getExtents() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Returns the extents of the tri planar component (in the component's order, not the image volume's).
getExtents(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the image extents translated into the Patient-Coordinate systsm:
getExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the image extents translated into the Patient-Coordinate system:
getExtentsSize(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getExternalDirs() - Static method in class gov.nih.mipav.util.MipavInitGPU: Get the default Shader directory.
getExternalFlashBounceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getExternalFlashDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getExternalFlashZoomDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getExternalNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getExternalSensorBrightnessValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getExtractedImages() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Return the images extracted from the source image.
getExtractedVOI() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: get the final VOI
getExtractList() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Method to return the extract list since local copies may change while the algorithm runs.
getExtraSamplesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getExtreme() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the view port extreme value e.
getExtremityCoil() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getEyeDist() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the z value of the eye point (0,0,z).
getEyePoint() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Return the world space coordinates for the eye point.
getEyePoint() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Return access to the current eye point in world coordinates.
getEyePoint() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Return access to the current eye point in world coordinates.
getFace(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getFaceDetectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
GetFaceIndex(double[], double, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
GetFaceIndex(float[], float, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
GetFaceIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
getFaceOrientation(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Return the guess at the face's orientation based on the image orientation information.
getFaceOrientation(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Return the guess at the face's orientation based on the image orientation information.
getFaceQuatity() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getFaceQuatityOrig() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
getFaceRecognitionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Return the y-axis movement multipler.
getFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Return the y-axis movement multipler.
getFAimage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getFAImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Functional Anisotropy Image.
getFAImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
getFastMarcher() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Get the fast marching object.
getFeatureArray() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
getFeatureArray() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: DOCUMENT ME!
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Get the feature image.
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Get the feature image.
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Get the feature image.
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Get the feature image.
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Get the feature image.
getFeatureImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Get the feature image.
getFeatureType() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
getFeatureWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model: The nr_feature*nr_class array w gives feature weights.
getFieldOfView() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getFieldSkip() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current field_skip value.
getFieldSkip() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current field_skip value.
getFieldSkip() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current field_skip value.
getFieldStrength() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getFile() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
getFile() - Method in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
getFile() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Returns the File that is this node on the tree.
getFile(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the file value of one of the parameters from the table.
getFileBlocks() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getFileChooser() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Get the active file chooser.
getFileDialog() - Method in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
getFileDir() - Method in class gov.nih.mipav.model.file.FileAvi: Returns fileDir.
getFileDir() - Method in class gov.nih.mipav.model.file.FileBRUKER: This convenience method is needed to establish the location of the 2dseq file
getFileDirectory() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns counter to start of image data.
getFileDirectory() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the directory to be written to.
getFileDirectory(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Returns the path information from the file name with the path information.
getFileExtents() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Analyze _extents_ value of 16,384.
getFileExtents() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: SiemensText _extents_ value of 16,384.
getFileExtents() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getFileFilter() - Method in interface gov.nih.mipav.view.FileSelector: Returns the file filter used by FileSelector.
getFileFilter() - Method in class gov.nih.mipav.view.FileSelectorImpl
getFileFilter() - Static method in class gov.nih.mipav.view.Preferences: Returns the index of the latest used file filter.
getFileFilter() - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.SurfaceLoaderSUR: Get access to FileFilter (to be used in JFileChooser) for the types of files that can be loaded by this class.
getFileFilter(int) - Method in class gov.nih.mipav.view.FileSelectorImpl: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: A private helper function to get the current used FileFilter from JFileChooser.
getFileFilter(JFileChooser, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: A private helper function to get the current used FileFilter from JFileChooser.
getFileFormat() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns file format.
getFileFormatDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getFileFromName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
getFileIndex(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Trims off the file extension and file name, but leaves the file index.
getFileInfo() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileAfni: getFileInfo - accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileAnalyze: Returns the FileInfoAnalyze read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileAvi
getFileInfo() - Method in class gov.nih.mipav.model.file.FileBFLOAT: Returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileBMP: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileBRUKER: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileCheshire: Returns the FileInfoCheshire read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileCOR: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileCZI: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileDicom: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
getFileInfo() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
getFileInfo() - Method in class gov.nih.mipav.model.file.FileICS: getFileInfo - accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileImageXML: Returns the FileInfoXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileInterfile: Returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileJP2: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileLIFF: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileLSM: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Get the file info generated by reading in the magnetom vision file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileMATLAB: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileMGH: Returns the FileInfoMGH read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileMinc
getFileInfo() - Method in class gov.nih.mipav.model.file.FileMincHDF: Returns the FileInfoXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileNIFTI: Returns the FileInfoNIFTI read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileNRRD: Returns the FileInfoNRRD read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FilePARREC: Returns the FileInfoAnalyze read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSiemensText: Returns the FileInfoSiemensText read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSpar
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSPM: Returns the FileInfoSPM read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSTK: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSurfaceXML: Returns the FileInfoSurfaceXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileSVS: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileTiff: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.file.FileTrackVis
getFileInfo() - Method in class gov.nih.mipav.model.file.FileVista
getFileInfo() - Method in class gov.nih.mipav.model.file.FileZVI: Accessor that returns the file info.
getFileInfo() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the fileInfo array (one per slice).
getFileInfo() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D: Returns the FileInfoSurfaceRefXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D: Returns the FileInfoSurfaceXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Returns the FileInfoSurfaceRefXML read from the file.
getFileInfo() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM: Returns the FileInfoSurfaceRefXML read from the file.
getFileInfo(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the fileInfo of a specific image slice.
getFileInfoVector() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
getFileLength() - Method in class gov.nih.mipav.model.file.FileDicomBase
getFileList() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
getFileList(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileMicroCat: Looks in the image directory and returns all images with the same suffix as fileName, sorted in lexicographical order.
getFileList(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Looks in the image directory and returns all images with the same suffix as fileName, sorted in lexicographical order.
getFileLocation() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
getFilename() - Method in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException: Deprecated.
use InvalidInputDataException.getFile() instead
getFileName() - Method in class gov.nih.mipav.model.file.FileAvi: Returns fileName.
getFileName() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the file name.
getFileName() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the file name to be written to.
getFileName() - Method in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
getFileName() - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Get the file name (no path).
getFileName(boolean) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D: Calls a dialog to get a file name.
getFileName(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh: Calls a dialog to get a file name.
getFileName(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Calls a dialog to get a file name.
getFileName(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Returns the file name without path information from file name with the path information.
GetFilename(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Returns the file name of a path+file name string.
getFileNameList(FileInfoBase[]) - Static method in class gov.nih.mipav.model.file.FileUtility: Gets the file name list from which this ModelImage is opened.
getFileNameList(ModelImage) - Static method in class gov.nih.mipav.model.file.FileUtility: Gets the file name list from which this ModelImage is opened.
getFileNames() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getFileNumberMemoryDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFilePath() - Method in class gov.nih.mipav.view.dialogs.ScriptTreeNode
getFilePointer() - Method in class gov.nih.mipav.model.file.FileDicomBase: Gets the file/buffer pointer and returns it.
getFileReader(String) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Gets a buffered reader for a given file name.
getFileReader(String) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Gets a buffered reader for a given file name.
getFiles(int[]) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
getFileSizeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDescriptor
getFileSourceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFileSuffix() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the file suffix.
getFileTempDir() - Static method in class gov.nih.mipav.view.Preferences: Returns the temporary directory which is used to store files to be deleted.
getFileTree() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel
getFileType() - Method in class gov.nih.mipav.model.file.FileIO: Presents a dialog for a user-entered definition of the image type.
getFileType() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor to get what type of file this is, such as analyze, raw, DICOM, etc.
getFileType() - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Accessor that returns the image type.
getFileType(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Sets the FileBase.
getFileType(String, String, boolean, boolean, boolean[]) - Static method in class gov.nih.mipav.model.file.FileUtility: Sets the FileBase.
getFileTypeFromStr(String) - Static method in class gov.nih.mipav.model.file.FileUtility: Returns the file type associated with a string.
getFileTypeFromSuffix(String) - Static method in class gov.nih.mipav.model.file.FileTypeTable: Gets the file type based upon the suffix.
getFileTypeInfo(int) - Static method in class gov.nih.mipav.model.file.FileTypeTable
getFileTypeStr(int) - Static method in class gov.nih.mipav.model.file.FileUtility: Return the string associated with a file type.
getFileTypeTable() - Static method in class gov.nih.mipav.model.file.FileTypeTable
getFillOrderDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFilmModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFilter() - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Accessor that gets the file filter.
getFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getFilterDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getFilterIndex(String) - Static method in class gov.nih.mipav.view.ViewImageFileFilter: DOCUMENT ME!
getFilterMethod() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getFilterMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getFilterName() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getFiltersDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getFilterType() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns type of filter - low, high, bandpass, or bandstop. - TO BE MOVED
getFinal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the final point with translations, rotations, scales, and skews representing the best Transformation.
getFinal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the final point with translations, rotations, scales, and skews representing the best Transformation.
getFinal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinal(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the final point with translations, rotations, scales, and skews representing the best tranformation.
getFinalCRC() - Method in class gov.nih.mipav.model.file.CRC
getFinalMaskImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: returns the mask image
getFinePixColorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFineRate() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getFineRate() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the fine sample rate.
getFineRateX() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getFineRateY() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getFineRateZ() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getFineVal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Get the fine value.
getFirmwareVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getFirst() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair
getFirst() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Pair
getFirst() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet
getFirst() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair
getFirst() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair
getFirstDirectoryOfType(Class<T>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Gets the first MetadataExtractor.Directory of the specified type contained within this metadata collection.
getFirstExifSubIFDDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata
getFirstFile(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store: DOCUMENT ME!
getFirstHuffmanTablesDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata
getFirstPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns first mid-sag point marker point for +orig to +acpc transformation in dataset ordering.
getFirstSliceAfterBleach() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getFitFunctionVisible() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getFitFunctionVisible - accessor that gets the visible flag of the fitted function.
getFittedFunctionsVisible() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag.
getFittedFuncts() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the fitted functions for this graph.
getFittedY() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction
GetFixedDepthLaplacian(SparseSymmetricMatrix, int, SortedTreeNodes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getFixedPoint(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns the position of the fixed point in the specified component (i.e. the number of fractional bits), which is always 0 for this ImgReader.
getFixedPoint(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Returns the position of the fixed point in the specified component (i.e. the number of fractional bits), which is always 0 for this ImgReader.
getFlashActivityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFlashBiasDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFlashBracketCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getFlashCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFlashControlModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 3 or 4 values
getFlashCurtainDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getFlashDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFlashDetailsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFlashDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getFlashExposureCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getFlashExposureCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getFlashExposureValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFlashFiredDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getFlashFiredDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFlashFiredDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getFlashIntensityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getFlashIntensityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 3 or 4 values
getFlashLevelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getFlashModeCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getFlashModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getFlashModelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getFlashPixVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFlashRemoteControlDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getFlashStatusDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDescriptor
getFlashTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getFlashUsedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getFlashWarningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getFlickerReduceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getFlip() - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
getFlipAngle() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getFlipAngle() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getFlipAngle() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getFloat(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: Reads four unsigned bytes from file.
getFloat(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads four unsigned bytes from file.
getFloat(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads four unsigned bytes from file.
getFloat(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a float, if possible.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a float value at position in the data array.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in float format.
getFloat(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking.
getFloat(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data function where bounds checking is NOT performed.
getFloat(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getFloat(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Float or an array of Float as needed by the tag's VM.
getFloat(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getFloat(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getFloat(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the float value of one of the parameters from the table.
getFloat(StringTokenizer) - Static method in class gov.nih.mipav.view.MipavUtil: Get a float value from a string tokenizer.
getFloat32() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getFloat32(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getFloatBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getFloatBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the float buffer (image).
getFloatC(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D color get data fuction where bounds checking is NOT performed.
getFloatC(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D color get data fuction where bounds checking is NOT performed.
getFloatC(int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getFloatObject(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a float.
getFloatProperty(Properties, String) - Method in class gov.nih.mipav.model.structures.TransMatrix
getFloatToShort() - Method in class gov.nih.mipav.model.file.FileWriteOptions
getFloatToShort() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
getFloatTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getFloatTriLinearBounds(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get a value using tri-linear interpoloation.
getFloatTriLinearBounds(float, float, float, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get a value using tri-linear interpoloation.
getFloatTriLinearBoundsTime(float, float, float, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get a value using tri-linear interpoloation.
getFloodCorrected() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getFmriStatusIndication() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getFNumber() - Method in class gov.nih.mipav.model.file.FileInfoBase
getFNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFocalLength() - Method in class gov.nih.mipav.model.file.FileInfoBase
getFocalLength35() - Method in class gov.nih.mipav.model.file.FileInfoBase
getFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocalLengthDescription(double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getFocalPlaneDiagonalDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getFocalPlaneDiagonalDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocalPlaneResolutionUnitDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFocalPlaneXResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFocalPlaneYResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getFocalUnitsPerMillimetreDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFocusAreaDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocusContinuousDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFocusDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getFocusDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getFocusDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocusInfoVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getFocusingModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getFocusMode1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFocusMode1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getFocusMode2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFocusMode2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getFocusModeCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getFocusModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getFocusProcessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getFocusRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFocusTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getFocusWarningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getFolderNameDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getFontDescriptors() - Method in class gov.nih.mipav.model.structures.VOIText: Gets the font's descriptors (PLAN, BOLD, ITALIC).
getFontName() - Method in class gov.nih.mipav.model.structures.VOIText: Gets the name (type) of the font.
getFontSize() - Method in class gov.nih.mipav.model.structures.VOIText: Returns the size of the font.
getForceQuiet() - Static method in class gov.nih.mipav.view.MipavUtil: Returns whether all error/warning/info dialogs should be suppressed.
getFormat() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: Return the format of each video frame.
getFormat() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: Return the format of each video frame.
getFormat() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: Return the format of each video frame.
getFormattedFloat(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getFormattedInt(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getFormattedString(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getFormattedThumbnailLine(int[], int) - Method in class gov.nih.mipav.model.file.FileImageXML: Returns a String for writing the thumbnail data (r,g,b) to the XML header.
getForwardNormalizedPosition(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Return the position of the curve of the point further down the curve the specified distance in the current heading.
getForwardNormalizedPosition(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Return the position of the curve of the point further down the curve the specified distance in the current heading.
getForwardNormalizedPosition(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Return the position of the curve of the point further down the curve the specified distance in the current heading.
getForwardNormalizedTime(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Return the normalized path distance of a point further down the branch curve in the current heading.
getForwardNormalizedTime(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Return the normalized path distance of a point further down the branch curve in the current heading.
getForwardNormalizedTime(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Return the normalized path distance of a point further down the branch curve in the current heading.
getFractalDimensionBoxCount() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getFractalDimensionEuclideanDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getFractionalEffectiveEcho() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getFrame() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterImage: Return the frame containing the image that this image placeholder refers to.
getFrame() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Various util type functions.********************************************************************************************* ********
getFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Accessor that returns the parent frame for the component.
getFrame() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the frame holding this component.
getFrame() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getFrame() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getFrame() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getFrame() - Method in class gov.nih.mipav.view.ViewControlsImage: Accessor for the ViewJFrameBase used.
getFrame() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the frame.
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameImage
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getFrame() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getFrameBuffer() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Grab the canvas image, and copy into the m_kSculptImage data members.
getFrameBuffer(BufferedImage, VolumeCanvas3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Read the frame buffer from the input VolumeCanvas3D and store the result in the input BufferedImage:
getFrameContainingImage(ModelImage) - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor that returns the active image frame vector.
getFrameGraphics() - Method in class gov.nih.mipav.view.ViewJFrameGraph
getFrameGroupImages() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getFrameGroupNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getFrameHeight() - Method in class gov.nih.mipav.view.ViewJFrameImage: Return the height that the frame should have.
getFrameLandMarkPoints() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get the frame four corner landmark points.
getFrameNumber() - Method in class gov.nih.mipav.view.VOIFrameNode: Gets the slice number of this VOI.
getFrameRate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Accessor that gets the frame rate.
getFrameRate() - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Accessor that gets the frame rate.
getFramesInfo() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
getFramesInfo() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
getFrameSize() - Method in class gov.nih.mipav.view.ViewJFrameImage: Return the preferred size for the frame.
getFrameSize(Dimension) - Method in class gov.nih.mipav.view.ViewJFrameImage: Return the preferred size for the frame.
getFrameWidth() - Method in class gov.nih.mipav.view.ViewJFrameImage: Return the width that the frame should have.
getFramingMethod() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getFree() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: The amount of free memory the thread found.
getFreeHeapMemory() - Static method in class gov.nih.mipav.view.MipavUtil: Return the amount of heap memory still available.
getFreq1() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns frequency 1 of filter.
getFreq2() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns frequency 2 of filter.
getFreqDim() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getFreqU() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns frequency U of filter.
getFreqV() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns frequency V of filter.
getFromOrigin() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
getFStopDescription(double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getFullBuffer(InputStream, byte[], int, int) - Method in class gov.nih.mipav.model.file.FileImageXML
getFullBuffer(InputStream, byte[], int, int) - Method in class gov.nih.mipav.model.file.FileNIFTI
getFullFileName() - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Get the full file name (path and file name).
getFullPath() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Returns the file pathname of the surface, if the surface was loaded from file.
GetFuncEvalBase() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: get point to func eval. base.
getFunction() - Method in class gov.nih.mipav.model.structures.TransferFunction: Gets the points that describe the function.
getFunctionsVisible() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag of the functions.
getFunctionVisible() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getFunctionVisible - accessor that gets the visible flag of the function.
getFunctName() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getFunctNames - gets the names of the functions.
getFuncts() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the functions for this graph.
getFuncType() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Gets the function type.
getFunused1() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV hack to the ANALYZE standard.
getFunused1() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV hack to the SiemensText standard.
getFunused2() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV hack to the ANALYZE standard.
getFunused2() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV hack to the SiemensText standard.
getFunused3() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: MIPAV hack to the ANALYZE standard.
getFunused3() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: MIPAV hack to the SiemensText standard.
getFuzzyThreshold() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that returns the fuzzy threshold.
getFuzzyThreshold() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder.
getFuzzyThreshold() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor that returns the fuzzy threshold.
getFWHM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Returns the full width at half maximum of the autocorrelation.
getFWHM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: returns the full width at half maximum of the autocovariance.
getFWHMB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: returns the full width at half maximum of the blue autocovariance.
getFWHMG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: returns the full width at half maximum of the green autocovariance.
getFWHMR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: returns the full width at half maximum of the red autocovariance.
getGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
getGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
getGainControlDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getGamma() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
getGamma() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getGamma() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns T20, T21, and T22 in the transformation matrix.
getGamma() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Get the gamma correction.
getGammaArray() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of T20, T21, and T22 in the transformation matrix.
getGammaHalflife() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getGapArray() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of coordinate values at which gap is present.
getGatedFrameMode() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getGatedStudyGeneral() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getGatingType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getGatingType2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getGattArray() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Gets the array with the attribute information.
getGattElem(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Accessor that returns the global attribute element at the indicated index in the global attribute array.
getGazeDistance() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the current distance ahead for looking down the path.
getGazeDistance() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the current distance ahead for looking down the path.
getGeneralData() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getGeneralInfoList() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getGeneralLight(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: The the general light with the given index.
getGeneralLights() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Returns all general lights.
getGenerated() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current generated string.
getGenerated() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current generated string.
getGenerated() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current generated string.
getGenerator() - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: Get the generator for the heap record.
getGenerator() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Support for regenerating an ModelTriangleMesh from an ModelClodMesh whenever the level of detail is changed for the ModelClodMesh.
getGeodesicGroup() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Return access to the Group data member m_kGeodesicGroup so Geodesic object can draw on the triangle mesh:
getGeodesicGroup() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Return access to the Group data member m_kGeodesicGroup so Geodesic object can draw on the triangle mesh.
getGeodesicPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Get the geodesic control panel.
getGeodesicPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Get the geodesic control panel.
getGeoLocation() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory: Parses various tags in an attempt to obtain a single object representing the latitude and longitude at which this image was captured.
getGeoLocationDimension(int, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGeometricCenter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the geometric center of the VOI ; return geometric center defined by the VOI.
getGeometricCenter() - Method in class gov.nih.mipav.model.structures.VOI: Returns the geometric center of the VOI (only contour).
getGeometricCenter() - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the geometric center of the contour.
getGeometricCenter() - Method in class gov.nih.mipav.model.structures.VOILine: Gets the geometric center of the contour.
getGeometricCenter() - Method in class gov.nih.mipav.model.structures.VOIPoint: Gets the geometric center of the contour.
getGeometricCenterA() - Method in class gov.nih.mipav.model.structures.VOIBase
getGLmax() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the value of glmax.
getGLmax() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the value of glmax.
getGLmax() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the value of glmax.
getGLmin() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the value of glmin.
getGLmin() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the value of glmin.
getGLmin() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the value of glmin.
getGlobalAlphaMultiplier() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
getGlobalAlphaMultiplier() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
getGlobalCRC() - Method in class gov.nih.mipav.model.file.CRC
getGlobalRadixInfo(int, int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getGlobalSaturationMultiplier() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
getGlobalSaturationMultiplier() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
getGlobalThicknessMultiplier() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
getGOn() - Method in class gov.nih.mipav.model.structures.ModelRGB: Returns the boolean indicating if the green channel should be displayed.
getGpsAltitudeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsAltitudeRefDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsAreaInformationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDate() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory: Parses the date stamp tag and the time stamp tag to obtain a single Date object representing the date and time when this image was captured.
getGpsDestDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDestinationReferenceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDestLatitudeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDestLongitudeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDifferentialDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDirectionDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDirectionReferenceDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsDopDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsHPositioningErrorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsLatitudeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsLongitudeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsMeasureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsProcessingMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsSpeedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsSpeedRefDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsStatusDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsTimeStampDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGpsVersionIdDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
getGradationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 3 or 4 values
getGradientEpsilon() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get The gradient magnitude epsilon value.
getGradientMagnitude() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getGradientMagnitude(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Calculates and stores the gradient magnitude images (3D or 4D) for the input image.
GetGradientMagnitude() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
GetGradientMagnitude() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
GetGradientMagnitudeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
GetGradientMagnitudeMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
GetGradientMagnitudeMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
GetGradientMagnitudeMinMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
GetGradientMapTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Gradient Magnitude Texture.
getGradientOrientationNumber() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getGradients() - Method in class gov.nih.mipav.model.file.DTIParameters
getGradMagA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Get the gradient magnitude imageA.
getGradMagA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Get the gradient magnitude imageA.
getGradMagA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Get the gradient magnitude imageA.
getGradMagA() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Get the gradient magnitude imageA.
getGradMagB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Get the gradient magnitude imageB.
getGradMagB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Get the gradient magnitude imageB.
getGradMagB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Get the gradient magnitude imageB.
getGradMagB() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Get the gradient magnitude imageA.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Get the gradient magnitude of the blurred curvature flow image.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Get the gradient magnitude of the blurred curvature flow image.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Get the gradient magnitude of the blurred curvature flow image.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Get the gradient magnitude of the blurred curvature flow image.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Get the gradient magnitude of the blurred curvature flow image.
getGradMagBlurCurvFlowImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Get the gradient magnitude of the blurred curvature flow image.
getGraph() - Method in class gov.nih.mipav.view.graphVisualization.MipavSAXReader: Returns the Graph.
getGraph() - Method in class gov.nih.mipav.view.ViewJFrameGraph
getGraphBounds() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getGraphicallyPrescribed() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getGraphPanel() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Access to the graph panel.
getGraphSystem() - Method in class gov.nih.mipav.view.graphVisualization.MipavSAXReader: Returns the GraphSystem.
getGraphXML() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Returns an xml description of the graph as a String.
getGrayIndices() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: DOCUMENT ME!
getgreen() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns int green.
getgreen() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Accessor that returns int green.
getgreen() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns int green.
getgreen() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns int green.
getGreen() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getGreen() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Accessor that returns int green.
getGreenFunction() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor that returns the green transfer function.
getGreenFunction() - Method in class gov.nih.mipav.model.structures.ModelRGB: Accessor that returns the green transfer function.
getGreenX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getGreenY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getGrey(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Calculates the grey value of this pixel using specified weights.
getGrey(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Calculates a grey value from an RGB or ARGB value using specified weights for each R,G and B channel.
getGridColor() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: get the color of the grid.
getGridColor() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the color of the background of the grid panel.
getGridColumn() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: getLightBoxCol - return the number of columns.
getGridHeight() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
getGridHeight() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
getGridLabeling() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Whether or not labels should be drawn on the grid overlay.
getGridLabelOrientation() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getGridlinesVisible() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag.
getGridOverlay() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: returns whether grid overlay is being displayed.
getGridRow() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the number of rows.
getGridSpacing() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the size of the space between image borders.
getGridSpacingX() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: returns the grid spacing in terms of resolution.
getGridSpacingY() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: returns the grid spacing in terms of resolution.
getGridWidth() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
getGridWidth() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
getGroup() - Method in class gov.nih.mipav.model.file.FileDicomKey: returns only the group portion of the DICOM key.
getGroup() - Method in class gov.nih.mipav.model.file.FileDicomTag: Accessor that returns the group word of the tag (hex).
getGroup() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the VOI object that contains this contour.
getGroup(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: Gets the group number of a given integer hash index.
getGroupColor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Get the group color with given group ID.
getGroupColor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Get the group color with given group ID.
getGroupMean() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
getGroupNumber() - Method in class gov.nih.mipav.model.file.FileDicomKey: returns the group portion of the DICOM key as an integer.
getGroupStdDev() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
getGrow() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The growth value for reallocations.
getGrow() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The growth value for reallocations.
getGrow() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The growth value for reallocations.
getGrow() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The growth value for reallocations.
getHalf(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getHaralickImagesNumber() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
getHardNoiseThreshold() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getHasIndex() - Method in class gov.nih.mipav.model.file.FileAvi
getHaveDcmMeta() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getHaveWindowed() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
getHaveZResol() - Method in class gov.nih.mipav.model.file.FileInfoBRUKER: Accessor to get the flag for having a z resolution.
getHBrushSize() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getHDRDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getHdrImageTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
getHdrSize() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getHeaderFile() - Method in class gov.nih.mipav.model.file.FileAnalyze: Returns the header file.
getHeaderFile() - Method in class gov.nih.mipav.model.file.FilePARREC: <<<<<<< .working Returns the header file.
getHeaderFile() - Method in class gov.nih.mipav.model.file.FileSiemensText: Returns the header file.
getHeaderFile(String[]) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Returns the header file (ends in .hdr) as a string.
getHeaderFile(String[]) - Static method in class gov.nih.mipav.model.file.FilePARREC: ======= Returns the header file.
getHeaderFile(String[]) - Static method in class gov.nih.mipav.model.file.FileSiemensText: Returns the header file (ends in .hdr) as a string.
getHeaderFile(String[]) - Static method in class gov.nih.mipav.model.file.FileSpar: ======= Returns the header file.
getHeaderRendererIcon(int, int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getHeaderSize() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
getHeadlineDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getHeapMemoryUsage() - Static method in class gov.nih.mipav.view.MipavUtil: Get an object containing information on the current memory usage.
getHeight() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
getHeight() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase
getHeight() - Method in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
getHeight() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
getHeight() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get subject's height (optional).
getHeight() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getHeight() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getHeight() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getHeight() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getHeight() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getHeight() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
getHeight() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getHeight() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the height of the display canvas.
getHeight(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the image height, based on the Patient Coordinates orientation from which the data will be viewed:
getHelp() - Method in interface gov.nih.mipav.view.Argument: Returns help for using command.
getHelp() - Method in enum gov.nih.mipav.view.Argument.InstanceArgument
getHelp() - Method in enum gov.nih.mipav.view.Argument.StaticArgument
getHigh() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getHighBit() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getHighIsoNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getHighIsoNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getHighISONoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getHighOP_24prev() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getHighOP_25post() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getHighOP_rel25() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getHighValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: DOCUMENT ME!
getHighXmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the highest x location in millimeters.
getHighYmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the highest y location in millimeters.
getHighZmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the highest z location in millimeters.
getHist() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to get the Analyze's hist_un0 string.
getHist() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to get the SiemensText's hist_un0 string.
getHist() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getHistoBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: This method returns the histogram array values
getHistoBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: The buffer of all histogram values.
getHistogram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Access to the 2D Histogram display class so it can be updated from outside this class.
getHistogramDialog() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
getHistogramFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Method that returns the Histogram frame if it exists else returns null.
getHistogramLUTTexture(int, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getHistogramLUTTextureIndex(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getHistogramPresent() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getHistoLUTActiveImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Returns which image is active in the HistoLUT -- either imageA or imageB.
getHistoLUTActiveImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Returns which image is active in the HistoLUT -- either imageA or imageB.
getHistoLUTComponent() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Get the histogram LUT component.
getHistoLUTComponentA() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the histogram component for imageA.
getHistoLUTComponentA() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Get the histogram component for imageA.
getHistoLUTComponentA() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Get the histogram component for imageA.
getHistoLUTComponentA() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Get the histogram component for imageA.
getHistoLUTComponentA() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the histogram component for imageA.
getHistoLUTComponentB() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the histogram component for imageB.
getHistoLUTComponentB() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Get the histogram component for imageB.
getHistoLUTComponentB() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Get the histogram component for imageB.
getHistoLUTComponentB() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Get the histogram component for imageB.
getHistoLUTComponentB() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the histogram component for imageB.
getHistoLUTFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
getHistoRGBActiveImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Returns which image is active in the HistoRGB -- either imageA or imageB.
getHistoRGBActiveImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Returns which image is active in the HistoRGB -- either imageA or imageB.
getHistoRGBFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
getHistory() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getHistory() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the image history string.
getHistoryInfo() - Method in class gov.nih.mipav.model.file.FileInfoVista
GetHistoTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Returns the multi-histogram histogram Texture.
GetHistoTCoords() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the texture coordinates for the multi-histogram histogram texture.
getHkey() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Accessor to get the Analyze's hkey_un0 string.
getHkey() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Accessor to get the SiemensText's hkey_un0 string.
getHkey() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getHole(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getHorizontalLandmark() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getHorizontalSamplingFactor() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent
getHospitalName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getHostImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Get host image.
GetHostImage(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Retrives the image connected to the shape.
GetHostImage(ModelSimpleImage, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Retrives the image connected to the shape.
getHostIP(String) - Static method in class gov.nih.mipav.view.Preferences: Accessor to get host (chat/file) server Internet Protocol for selected Name.
getHostName() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getHours() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
getHueAdjustmentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getHumidityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
getI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
GETI(byte[], int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
GETI(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
getiCenter() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getIcon(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Finds the icon of the specified name.
getIcon(String) - Static method in class gov.nih.mipav.view.MipavUtil: Finds the icon of the specified name.
getIconBase() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
getIconHeight() - Method in class gov.nih.mipav.model.structures.TableSorter.Arrow: DOCUMENT ME!
getIconHeight() - Method in class gov.nih.mipav.view.ColorIcon: getIconHeight - gets the height of the icon.
getIconImage(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Finds the image of the specified name.
getIconImage(String) - Static method in class gov.nih.mipav.view.MipavUtil: Finds the image of the specified name.
getIconName() - Static method in class gov.nih.mipav.view.Preferences: Returns the name of the application icon.
getIconWidth() - Method in class gov.nih.mipav.model.structures.TableSorter.Arrow: DOCUMENT ME!
getIconWidth() - Method in class gov.nih.mipav.view.ColorIcon: getIconWidth - gets the width of the icon.
getId() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
getId() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
getID() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Returns the unique id for the surface:
getID() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Returns the unique id for the surface:
getID() - Method in class gov.nih.mipav.model.structures.TransMatrixd
getID() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the ID.
getID() - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns ID in PolyLineSlice object.
getIdealWidth(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Calculate idealWidth for bins.
getIdealWidth(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: find the ideal bin width
getIdentifier() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
getIDFromRow(int) - Static method in class gov.nih.mipav.view.DICOMDisplayer: Returns the ID from the specificed row.
getiFinal() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getIflag() - Method in class gov.nih.mipav.model.algorithms.ODE
getIflag() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getiImage() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getImage() - Method in class gov.nih.mipav.model.algorithms.LightboxGenerator: returns the newly created image
getImage() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterImage: Return the image that this image placeholder refers to.
getImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Accessor that returns the image.
getImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: gets the image that was imported from the frame or taken from files (ie., "browse files").
getImage() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Get the buffered image.
getImage() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Get the current model image.
getImage() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Gets the Java image.
getImage() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Access the associated image.
getImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModel
getImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModelSVM
getImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
getImage() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Gets Java image.
getImage() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Gets Java image.
getImage() - Method in class gov.nih.mipav.view.ViewJComponentBase: Gets the Java image.
getImage() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Access the associated image.
getImage() - Method in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
getImage(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Returns the image associated with a image placeholder variable.
getImage(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the model image assigned to one of the image parameters from the table.
getImage(String) - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Retrieves an image from the image table being used by the current script we are running.
GetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the ModelImage volume data.
getImage2() - Method in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
getImage25D() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the boolean indicating if 3D images are processed one slice at a time.
getImage3DMultiBuffer() - Method in class gov.nih.mipav.model.file.FileLSM: Accessor that returns the image buffer.
getImageA() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Returns imageA, which may have changed during the match.
getImageA() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: get image a
getImageA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Accessor that returns the reference to image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor that returns the reference to image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Accessor that returns the image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Accessor that returns the reference to image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Accessor that returns the reference to image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Accessor that returns the image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Get the image A reference.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Accessor that returns the reference to image A.
getImageA() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Return ModelImage A.
getImageA() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: get image a
getImageA() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the image A reference.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Get source image
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Accessor that returns the imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Accessor that returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Returns the reference to mipImage.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Returns the reference to imageA.
getImageA() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Accessor that returns the reference to imageA.
getImageAdjustmentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getImageAngulation() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getImageArray() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
getImageB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Returns imageB, which may have changed during the match.
getImageB() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getImageB() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: get image b
getImageB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Accessor that returns the image.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Accessor that returns the image.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Accessor that returns the reference to image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor that returns the reference to image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Does nothing but must instantiate for this to be a subclass of RenderViewBase.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Accessor that returns the reference to image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Accessor that returns the reference to image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Accessor that returns the image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Get the imageB reference.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Accessor that returns the reference to image B.
getImageB() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Return ModelImage B.
getImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: get image b
getImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the imageB reference.
getImageB() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Accessor that returns the imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Accessor that returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Deprecated.
DOCUMENT ME!
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Returns the reference to imageB.
getImageB() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Accessor that returns the reference to imageB.
getImageBoundingBox() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the contour bounding-box.
getImageBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileAfni: getImageBuffer - accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileBFLOAT: Returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileBMP: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileCOR: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileCZI: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileICS: getImageBuffer - accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileInterfile: Returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileJP2: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileLIFF: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileLSM: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileMATLAB: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileSTK: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileSVS: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileTiff: Accessor that returns the image buffer.
getImageBuffer() - Method in class gov.nih.mipav.model.file.FileZVI: Accessor that returns the image buffer.
getImageBufferA() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets imageA's image buffer of intensities.
getImageBufferB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets imageB's image buffer of intensities.
getImageCenter() - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates translation offset for transforming image about the center of the image.
getImageCentermm(boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates translation offset for transforming image about the center of the image in the resolution space.
getImageComponent() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Accessor that returns the reference to m_kImageComponent.
getImageCompressionTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getImageCreationDate() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageCreationTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageDataDescription() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImageDataFileName() - Method in class gov.nih.mipav.model.file.FileInfoXML: Returns the name of the image data file (not the xml header).
getImageDescription() - Method in class gov.nih.mipav.model.file.FileInfoXML: Returns description of the image.
getImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getImageDirectory() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns the directory where the image file is located.
getImageDirectory() - Static method in class gov.nih.mipav.view.Preferences: Returns the image directory used last time.
getImageDirectory() - Method in class gov.nih.mipav.view.ViewDirectoryChooser: Displays a dialog to select a directory, with the image directory as the default.
getImagedNucleus() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getImageDTIParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getImageDuration() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImageFieldStrength() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageFileName() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns the file name of the image.
getImageFileName() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
getImageFileName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getImageFiles() - Method in class gov.nih.mipav.model.file.FileAnalyze: Returns the image file list.
getImageFiles() - Method in class gov.nih.mipav.model.file.FilePARREC: Returns the image file list.
getImageFiles() - Method in class gov.nih.mipav.model.file.FileSiemensText: Returns the image file list.
getImageFiles(String[]) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Returns the image file list.
getImageFiles(String[]) - Static method in class gov.nih.mipav.model.file.FilePARREC: Returns the image file list.
getImageFiles(String[]) - Static method in class gov.nih.mipav.model.file.FileSiemensText: Returns the image file list.
getImageFrameVector() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns.
getImageFrameVector() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor that returns frame vector.
getImageHeaderBlocks() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeaderCreatorProcess() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeaderCreatorTask() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeaderDisclaimer() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeaderID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeaderRevisionNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageHeight() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory: Deprecated.
use MetadataExtractor.JfifDirectory.getResX() instead.
getImageHeight() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getImageHeight() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getImageHeightDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getImageHeightDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getImageHeightDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getImagEigenvalues() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Return the imaginary parts of the eigenvalues
getImageIndex(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel
getImageInfoDialogB() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the image info dialog for image B.
getImageInfoList() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getImageLabelsUsedInScript(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns an array of image parameters labels used in a given script.
getImageLink() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns The SurfaceRender ModelImage imageA for linking to the LUT.
getImageLink() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Returns The SurfaceRender ModelImage imageA for linking to the LUT.
getImageList() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
getImageLocation() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImageLocation() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageMargins(ModelImage, TransMatrix, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Calculate necessary padding for image given applied transform.
getImageMargins(ModelImage, TransMatrix, float, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Calculate necessary padding for image given applied transform.
getImageMatrix() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Returns the menu that contains all image and overlay commands
getImageModality() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns the type of image.
getImageMode() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageName() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns the name of the image.
getImageName() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
getImageName() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute
getImageName(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getImageName(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Retrieves the image name linked to an image variable.
getImageNameA() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the title of image A.
getImageNameArray() - Method in class gov.nih.mipav.model.structures.ModelImage
getImageNameB() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the title of image B.
getImageNameFromInfo() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: Returns the image name which should be used for the image this file info is attached to (studyNum_seriesNum).
getImageNameFromInfo() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X: Returns the image name which should be used for the image this file info is attached to (studyNum_seriesNum).
getImageNameFromInfo() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: Returns the image name which should be used for the image this file info is attached to.
getImageNode() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Returns the image node (image info and data)
getImageNumber() - Method in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
getImageNumber() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
getImageNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageOffcentre() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getImageOffset() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageOn(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
GetImageOn(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
getImageOrder() - Method in class gov.nih.mipav.model.structures.ModelImage: For multiple image viewers this indicates order of the image.
getImageOrientation() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the image orientation.
getImageOrientation() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Gets the image orientation (sagittal, axial, ...).
getImageOrientationFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the image orientation associated with a string.
getImageOrientationPatient() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getImageOrientationStr(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Return the string associated with an image orientation.
getImageOriginal() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Get a reference to the original image we passed into the renderer from MIPAV (non-cloned).
getImageParameter(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return one of the image parameters from the table.
getImagePath() - Method in class gov.nih.mipav.view.ViewOpenFileUI: Returns the path to the last opened image.
getImagePositionPatient() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getImageProcessingVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getImageQuality1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getImageQuality2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getImageQuality2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getImageQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getImageQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getImageR() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Accessor to get imageR.
getImageR() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Accessor to get imageR.
getImageRawDataSystemID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageRegistered() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Access the image containing the registered source values.
getImageRelativeStartTime() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImageResUnitsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
getImageResXDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
getImageResYDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
getImagesAllocated() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageSeparate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns the ModelImage associated with the independent LUT.
getImageSeparate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Returns the ModelImage associated with the independent LUT.
getImageShape() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImagesInfo() - Method in class gov.nih.mipav.model.file.FileInfoVista
getImageSize() - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Gets the size of the image (width * height).
getImageSizeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getImageSizeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getImageSizeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getImageSource() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Return access to input source image data values which is the same as was passed to the constructor.
getImageSpacing() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImagesPerCardiacCycle() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImagesPerEWindow() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImageStabilizationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getImageStabilizationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getImageStabilizationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getImageStabilizationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getImageStartTime() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImageSystemGenerationID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageTable() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Returns a reference to the image table being used to run the current script.
getImageTable() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Returns a reference to the image table being used to run the current script.
getImageTable() - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Returns a reference to the image table being used to run the current script.
getImageTableVector() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
getImageTarget() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Return access to input target image data values which is the same as was passed to the constructor.
getImageTimeStamp() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Get the system timestamp.
getImageType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImageType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getImageTypeMR() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getImageVariable(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Returns the image variable that an image name is associated with.
getImageVarsUsedInScript(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns an array of image placeholder variables used in a given script.
getImageVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
getImageWidth() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory: Deprecated.
use MetadataExtractor.JfifDirectory.getResY() instead.
getImageWidth() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getImageWidth() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getImageWidthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getImageWidthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
getImageWidthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
getImaginary() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplex
getImaginary() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryItem: DOCUMENT ME!
getImaginaryData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter: Returns reference to imaginary data array.
getImaginaryData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Returns reference to imaginary data array.
getImaginaryData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Returns reference to imaginary data array.
getImaginaryData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Returns reference to imaginary data array.
getImaginaryData() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Returns reference to imaginary data array.
getImaginaryiData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to imaginaryi data array.
getImaginaryjData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to imaginaryj data array.
getImaginarykData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to imaginaryk data array.
getImagingFrequency() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getImagingModality() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getImgBLHC_A() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgBLHC_A() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgBLHC_R() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgBLHC_R() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgBLHC_S() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgBLHC_S() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgExtents() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getImgModality() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getImgOrientation() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getImgResolution() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getImgTLHC_A() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTLHC_A() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgTLHC_R() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTLHC_R() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgTLHC_S() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTLHC_S() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgTRHC_A() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTRHC_A() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgTRHC_R() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTRHC_R() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgTRHC_S() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getImgTRHC_S() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getImgType() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
getImgType() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getImpl() - Method in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode
getImpl() - Method in enum gov.nih.mipav.view.ViewJSlider.SliderType
getImplementationClassUID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Implementation class uid.
getImplementationVersion() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Implementation version uid.
getInbagCounts() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getInbagCounts() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getIncomingEndian() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Returns constant indicating endianess of incoming data.
getIncomingSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Returns the incoming data size.
getIncreasingOrder() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Return the increasing order flag.
getIncrement() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the increment between displayed slices
getIncrement() - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Accessor that returns the new increment value.
getIncrement() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Accessor that returns the new increment value.
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexItem: DOCUMENT ME!
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getIndex() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns this pixel's index.
getIndex() - Method in class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.indexValue
getIndex() - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: Get the index of the heap record within the records array.
getIndex() - Method in class gov.nih.mipav.model.algorithms.libdt.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueItem
getIndex() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueItem: DOCUMENT ME!
getIndex() - Method in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: Returns index that we're at.
getIndex() - Method in class gov.nih.mipav.model.file.FileIO.OrientStatus: Provides the index.
getIndex() - Method in class gov.nih.mipav.model.file.FileVOI.VOISortItem: DOCUMENT ME!
getIndex() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexItem: DOCUMENT ME!
getIndex() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexItem: DOCUMENT ME!
getIndex(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
getIndex(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getIndex(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: A convenience function for mapping the 3D voxel position (iX,iY,iZ) to a 1D array index.
getIndex(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: A convenience function for mapping the 3D voxel position (iX,iY,iZ) to a 1D array index.
getIndex(int, int, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Compute the index in a linear data array dimensioned to store all the samples of this volume.
getIndex(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: A convenience function for mapping the 3D voxel position (iX,iY,iZ) to a 1D array index.
getIndex(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: A convenience function for mapping the 3D voxel position (iX,iY,iZ) to a 1D array index.
getIndex(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
getIndex(TreeNode) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
GetIndex(double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
GetIndex(double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
GetIndex(float[], float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
getIndexChecked(int, int, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Compute the index in a linear data array dimensioned to store all the samples of this volume.
getIndexCopy() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the connectivity array of a triangle mesh.
getIndexedDescription(int, int, String...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getIndexedDescription(int, String...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getIndexedLUT() - Method in class gov.nih.mipav.model.structures.ModelLUT
getIndexFurthestDistance() - Method in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Get the index of the volume sample stored in a linear array which is at the end of the longest minimum cost path.
getIndexIncX() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get the amount to increment the linear array index for each increment in the x coordinate index.
getIndexIncY() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get the amount to increment the linear array index for each increment in the y coordinate index.
getIndexIncZ() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get the amount to increment the linear array index for each increment in the z coordinate index.
getIndexNeighbors27(int, int[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill an array of indexes for a linear array of volume values.
getIndexNeighbors27(int, int, int, int[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill an array of indexes for a linear array of volume values.
getIndexNeighborsGradient(int, int, int, ModelImage3DLayout.GradientNeighbors) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Retrieve the indexes for the 6-connected neighbors of the specified sample which are used to compute the gradient.
getIndexNeighborsVoxel(int, int, int, int[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill an array of indexes for a linear array of volume values.
getIndexNestingLevel() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getIndexPath() - Method in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Get the indexes of the samples extracted along the longest minimum cost path.
getIndexString(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when writing the surface.xml file: Converts the input array of int[] to a String for writing:
getIndexX(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get X sample coordinate from a linear array index for volume data.
getIndexY(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get Y sample coordinate from a linear array index for volume data.
getIndexZ(int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Get Z sample coordinate from a linear array index for volume data.
getIndices() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Get indices for reordering data from Image B to the Axial coordinate system (LPS) and to the coordinate system of Image A.
getInferiorEdge() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns PC inferior edge marker point for +orig to +acpc transformation in dataset ordering.
getInferiorPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most inferior point marker for +acpc to +tlrc transformation in dicom ordering.
getInfo() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return a reference to information about this tag in the dicom dictionary.
getInfo(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Return information about a key in the dicom dictionary.
getInfo(PrivateFileDicomKey) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Return information about a key in the dicom dictionary.
getInfoNode() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Returns the information node with dicom/patient info
getInnerClass() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
getInnerException() - Method in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
getInPlanePhaseEncodingDirection() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getInputImageLabel(int) - Static method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Returns the label which should be used for an input image parameter.
getInputImageRequirements() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getInputImageRequirements() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getInputImageRequirementsString() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getInputStream(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: DOCUMENT ME!
getInputStream(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: DOCUMENT ME!
getInsideMeshImage(BitSet) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getInsideMeshImage(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getInsideVoxels() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Identify all voxels that are inside or on the mesh that represents the brain surface.
getInsideVoxels() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Identify all voxels that are inside or on the mesh that represents the brain surface.
getInsideVoxels(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Identify all voxels that are inside or on the mesh that represents the brain surface.
getInSphere(PointDistanceFunctor, VertTmark, Point3, float, Vector<Vertex>, Vector<Float>, Vector<Point3>) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
getInSphereVertex(TriMesh, StaticGrid, Point3, float, Vector<Vertex>, Vector<Float>, Vector<Point3>) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
getInstance(float[]) - Static method in class gov.nih.mipav.model.GaussianKernelFactory
getInstanceCreationTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getInstanceNumber() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getInstanceTitle() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
getInt(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: Reads four signed bytes from file.
getInt(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: Reads four signed bytes from file.
getInt(boolean) - Method in class gov.nih.mipav.model.algorithms.libdt: Reads four signed bytes from file.
getInt(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads four signed bytes from file.
getInt(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads four signed bytes from file.
getInt(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as an int, if possible.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a int value at position in the data array.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in int format.
getInt(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking.
getInt(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getInt(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getInt(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getInt(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getInt(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the integer value of one of the parameters from the table.
getInt(StringTokenizer) - Static method in class gov.nih.mipav.view.MipavUtil: Get an integer value from a string tokenizer.
getINT_ARGB(int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory: Instancing method for BufferedImage of type BufferedImage.TYPE_INT_ARGB
getINT_ARGB(Dimension) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory: Instancing method for BufferedImage of type BufferedImage.TYPE_INT_ARGB
getINT_ARGB(Image) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory: shortcut for get(img, BufferedImage.TYPE_INT_ARGB).
getInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns a signed 16-bit int calculated from two bytes of data (MSB, LSB).
getInt16(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
getInt16(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Retrieves an integer (16 bit) value from a DICOM object.
getInt16(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns a signed 16-bit int calculated from two bytes of data at the specified index (MSB, LSB).
getInt24(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Get a 24-bit unsigned integer from the buffer, returning it as an int.
getInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns a signed 32-bit integer from four bytes of data.
getInt32(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
getInt32(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns a signed 32-bit integer from four bytes of data at the specified index the buffer.
getInt32FromString(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getInt64() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Get a signed 64-bit integer from the buffer.
getInt64(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Get a signed 64-bit integer from the buffer.
getInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns a signed 8-bit int calculated from the next byte the sequence.
getInt8(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns a signed 8-bit int calculated from one byte of data at the specified index.
getIntArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets the specified tag's value as an int array, if possible.
getIntBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getIntBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: gGets the integer buffer (image).
getInteger(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as an Integer, if possible.
getInteger(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Integer or an array of Integer as needed by the tag's VM.
getIntegral() - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
getIntegral() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
getIntegratedMarkerAnnotations(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
getIntegratedMarkerAnnotationsPath(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
getIntelligentDRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getIntelligentExposureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getIntelligentResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getIntensifiedColor() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Get the light color scaled with the intensity factor.
getIntensity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityItem: DOCUMENT ME!
getIntensity() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensity
getIntensity() - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Accessor that returns current intensity value to commit.
getIntensity() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query the current light intensity.
getIntensityDropper() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the intensityDropper intensity.
getIntensityLevel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getIntensityPaintName() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Accessor that returns the current intensity paint name (that is, the text of the intensity button, 0, 1, etc.).
getIntensityValue() - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Accessor that returns current intensity value to commit in the form of a string.
getIntentCode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Accessor that returns the intent code.
getIntentName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getIntentP1() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Accessor that returns first statistical parameter.
getIntentP2() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Accessor that returns second statistical parameter.
getIntentP3() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Accessor that returns third statistical parameter.
getInterfileDataType() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getInterImageDelay() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getInterior() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the indices of the interior points of the current region.
getInterior() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The set of interior points that were identified as part of the coarse-level region growing.
getInterlaceMethod() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
getInterlaceMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getInternalFlashDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getInternalNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getInternalSerialNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getInternalSerialNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDescriptor
getInternCompData(DataBlk, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
getInternCompData(DataBlk, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.
getInteropIndexDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getInteropVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getInterp() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getInterp() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the initial interpolation.
getInterp2() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getInterp2() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the final interpolation.
getInterpMode() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Gets the interpolation mode.
getInterpMode() - Method in class gov.nih.mipav.view.ViewJComponentBase: Gets the interpolation mode.
getInterpolateDisplay() - Static method in class gov.nih.mipav.view.Preferences: Returns how pixel values are interpolated for displayed slices.
getInterpType() - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
getInterScaleSaliency() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getIntersectingTriangles(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles: Returns the triangles that intersect or contain the specified rectangle.
getIntersectX(Point3f, Point3f, Point3f, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectX(Point3f, Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectX(Vector3f, Vector3f, Vector3f, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectX(Vector3f, Vector3f, Vector3f, float, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectX(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectX(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Compute the point of intersection between a line (0,iY,iZ)+t(1,0,0) and the triangle defined by the three input points.
getIntersectY(Point3f, Point3f, Point3f, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectY(Point3f, Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectY(Vector3f, Vector3f, Vector3f, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectY(Vector3f, Vector3f, Vector3f, float, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectY(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectY(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Compute the point of intersection between a line (iX,0,iZ)+t(0,1,0) and the triangle defined by the three input points.
getIntersectZ(Point3f, Point3f, Point3f, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntersectZ(Point3f, Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntersectZ(Vector3f, Vector3f, Vector3f, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntersectZ(Vector3f, Vector3f, Vector3f, float, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntersectZ(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntersectZ(Vector3f, Vector3f, Vector3f, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Compute the point of intersection between a line (iX,iY,0)+t(0,0,1) and the triangle defined by the three input points.
getIntervalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getIntervalModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getIntervalNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getIntervals() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getIntProperty(Properties, String) - Method in class gov.nih.mipav.model.structures.TransMatrix
getIntTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that performs tri-linear interpoloation.
getIntValueOfKey(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
getInverseDicomArray() - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
getInversionDelay() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getInversionTime() - Method in class gov.nih.mipav.model.file.FileInfoBRUKER: Gets the inversion time of the scan.
getInvertXStr() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getInvertYStr() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getInvertZStr() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getInvestigator(int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the specified investigator.
getInvestigators() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets an array (3) of Investigator data.
getInvestigatorsComplete() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get an array (3) of booleans that tell whether the investigator data for that index is complete.
getIP(String) - Static method in class gov.nih.mipav.view.Preferences: Accessor to get DICOM image server Internet Protocol for selected AETitle.
getIPD() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Sets the inter-pupillary distance for stereo rendering.
getIs2_5D() - Method in class gov.nih.mipav.model.file.FileInfoBase: Return whether or not the image's slices are time based.
getIs2D() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getIsClodMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Returns if the mesh is type ClodMesh or ModelTriangleMesh.
getIsInitialised() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
getIsInitialised() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getIsoDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getIsoEquivalentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getIsOrderedVariable() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getIsOrderedVariable() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getIsoSensitivityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getIsoSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getIsoSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getIsoSpeedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getISOSpeedRating() - Method in class gov.nih.mipav.model.file.FileInfoBase
getIsotopeName() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getIsotopeNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
GetIsoValue() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getIsoValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getIsSrgbColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getItem() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueItem
getItem() - Method in class gov.nih.mipav.view.ViewMenuBuilder.MipavMenuItem: DOCUMENT ME!
getItem(int) - Method in class gov.nih.mipav.model.file.FileDicomSQ: Gets the specified item from the sequence vector.
getItem(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Return the specified annotation item.
getItem(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Return the specified annotation item.
getItemsToRender() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
getIterationCountDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDescriptor
getIterations() - Method in class gov.nih.mipav.model.algorithms.LsqFit
getIterations() - Method in class gov.nih.mipav.model.algorithms.NL2sol
getIterations() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
getIterations() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the number of iterations.
getJ() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
getJ() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
getJacobianLayout() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
getJarClassLoader() - Method in class gov.nih.mipav.view.ViewUserInterface
getJavaVersion() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getJMenuBar() - Method in class gov.nih.mipav.view.ViewJFrameImage
getJOCTET(byte) - Method in class gov.nih.mipav.model.file.libjpeg
getJones30() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getJones30VMS() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getJpegCommentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDescriptor
getJpegProcDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getJpegQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getJpegQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getJpegQualityString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getJSAMPLE(byte) - Method in class gov.nih.mipav.model.file.libjpeg
getJSAMPLE(short) - Method in class gov.nih.mipav.model.file.libjpeg
getJunctionNeighbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getJunctions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
getJunctionWalls(AlgorithmNetworkSnake.SnakeInitialiser.Node, ArrayList<ArrayList<Point>>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getkCenterImage() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getKernel(float) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Computes a 1D Gaussian kernel for the given sigma value.
getKernelType() - Method in class gov.nih.mipav.model.GaussianKernelFactory
getKernelWorkDimensions(CLFFTPlan.CLFFTKernelInfo, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getKExtents() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
getKey() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getKey() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.fraud_pair_item
getKey() - Method in class gov.nih.mipav.model.file.FileDicomKey: Gets the unique identifier.
getKey() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return the key object (group,element info) for this tag.
getKey() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Return the dicom tag key ('group,element') that this information object describes.
getKey() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair
getKey() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Get the unique key identifier associated with this point.
getKey() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier: Accessor to the DICOM Key held.
getKey() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
getKeyFromTagName(String) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Find the key of the corresponding tag name in the hashtable.
getKeyList() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
getKeyList() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
getKeyLog() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: provides the string key of translations between source filename and destination filename.
getKeypoints(Vector<AlgorithmBRISK.KeyPoint>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
getKeyPrev() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Get the unique key value for the point which is used to get to this point along the minimum cost path.
getKeys() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
getKeys() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
getKeys() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
getKeysDate() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getKeystoneCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getKeystoneDirectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getKeyString(String) - Method in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
getKeysVersion() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getKeyword() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return the keyword for this tag.
getKeyword() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Returns the keyword for this tag, a word with no spaces.
getKeyword(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Find the keyword of the tag given by the key in the hashtable.
getKeywords() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Returns any keywords contained in the IPTC data.
getKeywordsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getkImage() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getKnots() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath
getKnotX() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getKnotY() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getKurtosis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of kurtosis of the pixel values in the VOI
getKurtosisB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of kurtosis of the blue pixel values in the VOI
getKurtosisG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of kurtosis of the green pixel values in the VOI
getKurtosisR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of kurtosis of the red pixel values in the VOI
getLabel() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getLabel() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the parameter's label/name.
getLabel() - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the label of the VOI.
getLabel() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getLabel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Gets the label.
getLabel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Gets the label.
getLabel() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexItem: DOCUMENT ME!
getLabel() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexItem: DOCUMENT ME!
getLabel() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
getLabelTableA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the hash table for the imageA opacity slider.
getLabelTableA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the hash table for the imageA opacity slider.
getLabelTableB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the hash table for the imageB opacity slider.
getLabelTableB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the hash table for the imageB opacity slider.
getLabelTableGM_A() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the hash table for the imageA GM opacity slider.
getLabelTableGM_A() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the hash table for the imageA GM opacity slider.
getLabelTableGM_B() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the hash table for the imageA GM opacity slider.
getLabelTableGM_B() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the hash table for the imageA GM opacity slider.
getLabelType() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getLambda() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the positive scale factor lambda.
getLandmarkCounter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getLandmarkDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
GetLaplacian(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getLaplacianWeight() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the Laplacian weight 'd'.
getLargest(BitSet, int[], ArrayList<Integer>, ArrayList<Integer>, float, float, float, float[], float[], float[], Vector3f, Vector3f) - Static method in class gov.nih.mipav.model.structures.VOI: Finds the largest line that lies within entirely within the VOI.
getLargestDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the largest line segment totally contained within a 3D VOI (in terms of res).
getLargestImagePixelValue() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getLargestSliceDistance() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the largest line segment totally contained within a VOI slice (in terms of res).
getLaser() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: DOCUMENT ME!
getLast() - Method in class gov.nih.mipav.view.Rubberband: Returns the last point of the rubberband.
getLastFileNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getLastImageAt(int) - Static method in class gov.nih.mipav.view.Preferences: Returns the image name of "last X images" at the given index.
getLastMouseX() - Method in class gov.nih.mipav.view.ViewJComponentBase: Get the x position of the last place we drew something from a mouse event.
getLastMouseY() - Method in class gov.nih.mipav.view.ViewJComponentBase: Get the y position of the last place we drew something from a mouse event.
getLastNumPixels() - Method in class gov.nih.mipav.model.structures.VOIBase: Accessor that returns the number of points used in the most recent intensity calculation of this contour.
getLastOpenSequenceChannels() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the saved number of channels used when opening an image sequence.
getLastOpenSequenceOrdering() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the Z-C-T ordering of data used when opening an image sequence.
getLastOpenSequencePath() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the last path used when opening an image sequence.
getLastOpenSequencePath() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Reads the preferences file to determine the path that was last used in opening a file sequence.
getLastOpenSequenceSlices() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the saved number of slices used when opening an image sequence.
getLastOpenSequenceTimePoints() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the saved number of time points used when opening an image sequence.
getLastScript() - Method in class gov.nih.mipav.view.ViewUserInterface: Returns the last script file used from the preferences.
getLastSliceBeforeBleach() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getLastStackFlag() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getLastStackFlag() - Method in class gov.nih.mipav.view.ViewUserInterface: Gets the last checkbox entry for "multi-file" for opening images.
getLastState() - Method in class gov.nih.mipav.view.ViewJFrameBase: getLastState.
getLastState() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Gets the display state of the Frame ( either Frame.NORMAL or Frame.ICONIFIED ).
getLastXImages() - Static method in class gov.nih.mipav.view.Preferences: Gets the names of the last X number of images that were loaded from the Preferences file.
getLateralChromaticAberrationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getLatitude() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
getLatitude(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Produce polylines that are superimposed on the input cortical mesh, sphere, and plane.
getLatitude(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Produce polylines that are superimposed on the input cortical mesh, sphere, and plane.
getLattice() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Return access to the 2D discretized B-Spline internally created given the size of tbe input target image, and the specified number of control points and degree of basis function for each B-Spline basis axis.
getLattice() - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Return access to the 3D discretized B-Spline internally created given the size of tbe input target image, and the specified number of control points and degree of basis function for each B-Spline basis axis.
getLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getLatticeCurveLength() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getLatticeCurveLength() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getLatticePickedPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getLatticeSegment() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
getLatticeStraight() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getLatticeStraight() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getLaxStartupFile(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: This method returns the startup file which contains the MIPAV start-up options.
getLeft() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getLeftCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getLeftList() - Method in class gov.nih.mipav.view.JPanelListController: Convience method to get list A.
getLeftNeuron() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
getLeftPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most left point marker for +acpc to +tlrc transformation in dicom ordering.
getLeftTable() - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
getLeftTree() - Method in class gov.nih.mipav.view.JPanelTreeController: Convience method to get tree A.
getLegacyNum() - Method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
getLegacyNum() - Method in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
getLegacyNum() - Method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
getLegacyNum() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Modality
getLegacyNum() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getLegacyNum() - Method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
getLegacyVal() - Method in enum gov.nih.mipav.model.file.FileInfoDicom.VRtype
getLegendVisible() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag.
getLength() - Method in class gov.nih.mipav.model.file.FileDicomTag: Returns the length of this tag.
getLength() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
getLength() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
getLength() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns the length of the data source in bytes.
getLength() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader: Reads to the end of the stream, in order to determine the total number of bytes.
getLength(boolean, byte, byte, byte, byte) - Method in class gov.nih.mipav.model.file.FileDicom: Reads in four integers, then tests for implicit Value Representation(VR) or explicit VR.
getLengthBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
getLengthPtToPt(float[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the total length of this contour, based on the input resolutions.
getLengthPtToPt(float[]) - Method in class gov.nih.mipav.model.structures.VOIProtractor: Returns the total length of this contour, based on the input resolutions.
getLengthPtToPt(float[][]) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the total length of this contour, based on the input resolutions.
getLengthString(int, int, float[], int[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the length of this contour between the two positions along the contour.
getLensDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getLensFirmwareVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getLensFirmwareVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getLensFocusDistance() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getLensPropertiesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getLensSpecificationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getLensSpecificationDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getLensStopsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getLensTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getLensTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getLensTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getLensTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getLevel1Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getLevel1Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
getLevel1FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel1FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevel1FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel1FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevel2Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getLevel2Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
getLevel2FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel2FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevel2FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel2FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevel4Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getLevel4Factor() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
getLevel4FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel4FactorXY() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevel4FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
getLevel4FactorZ() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
getLevelDetail() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Returns the surface level of detail.
getLevelDetail() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Returns the surface level of detail.
getLevelDetail() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the level of detail
getLevels() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
getLevelSetEvolver() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Get the level-set evolver object.
getLevelSurface(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Construct a level surface from the 3D image managed by the extractor.
getLevelSurface(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Construct a level surface from the 3D image managed by the extractor.
getLevelSurface(int, ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: Construct a level surface from the 3D image managed by the extractor.
getLevelSurface(int, Vector<int[]>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor
getLevelSurface(int, Vector<int[]>, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Construct a level surface from the 3D image managed by the extractor.
getLevelValue() - Method in class gov.nih.mipav.view.WindowLevel
getLibre() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getLight(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: The the general light with the given index.
getLightBoxFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Method that returns the lightbox frame if it exists else returns null.
getLightColor(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The only caller of this method is the light attribute dialog, an object from class JDialogSurfaceLight.
getLightControl() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getLightControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the light control panel.
getLightCount() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The number of lights supported by the viewer (currently 9).
getLightDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Return the surface light control dialog box.
GetLights() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
GetLights() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the Light[] used in the volume/surface display.
getLightSourceSpecialDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getLine() - Method in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
getLineCount(int) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Gets the number of lines in the specified text area.
getLineNumber() - Method in exception gov.nih.mipav.model.scripting.ParserException: Return the line number in the script where the problem occurred.
getLink(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
getLinkedImagePath() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the full path + name of the linked image.
getLinkedTriFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Gets the linked ViewJFrameTriImage.
getLinkedTriFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Gets the linked ViewJFrameTriImage.
getLinkedTriFrame() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the linked ViewJFrameTriImage.
getLinkingNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getList() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Return the parameter list.
getList() - Method in class gov.nih.mipav.view.ViewMenuBuilder.QuickList: Returns the vector of quicklist items (JMenuItems w\ actionlistener attached).
getList(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the one of the parameters from the table (cast as a ParameterList).
getListA() - Method in class gov.nih.mipav.view.JPanelListController: there is no programmatic way to determine which arrow is pointing where.
getListB() - Method in class gov.nih.mipav.view.JPanelListController: there is no programmatic way to determine which arrow is pointing where.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.FileCellRenderer
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer: This method finds the image and text corresponding to the selected value and returns the label, set up to display the text and image.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer2: This method finds the image and text corresponding to the selected value and returns the label, set up to display the text and image.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.FontBoxRenderer: This method finds the image and text corresponding to the selected value and returns the label, set up to display the text and image.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.CustomCellRenderer: Set the attributes of the class and return a reference.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages.ImageCellRenderer: Return a component that has been configured to display the specified value.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage.PaintBoxRenderer: This method finds the image and text corresponding to the selected value and returns the label, set up to display the text and image.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.PaintBoxRenderer: This method finds the image and text corresponding to the selected value and returns the label, set up to display the text and image.
getListenerList() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
getListeners() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
getListLayout() - Method in class gov.nih.mipav.view.JPanelListController: Returns the layout of the associated display panel or "how the arrows point", not the layout of the buttons themselves.
getListLength() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
getListPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
getListSize() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Return the size of the parameter list.
getListType() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Return the type of parameters in this parameter list.
getListTypeFromString(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the type of the parameters contained in this list, based on the full type string for the list.
getLoc() - Method in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
getLocal(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
getLocalAppTitle() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Returns the AETitle we use to identify ourself (our local AppTitle name).
getLocalCenter(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getLocalCosts(ModelImage, int, float[], float[], float[], ViewJProgressBar) - Static method in class gov.nih.mipav.view.RubberbandLivewire
getLocalImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Returns a ModelImage in the local image space, if a local ModelImage has already been created it is returned.
getLocation() - Method in class gov.nih.mipav.model.file.FileIO.OrientStatus: Provides the value of the location.
getLocation(int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap: Returns the location of the ith color within the unit interval.
getLocation(int) - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
getLocation(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
getLocationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getLocations() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap
getLocations() - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
getLocations() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
getLocationString() - Method in class gov.nih.mipav.model.structures.VOIText: Gets a string describing the text location (in the slice, does not include which slice).
getLocator() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: DOCUMENT ME!
getLocator() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: DOCUMENT ME!
getLockStatus() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the lock status of the image.
getLOD() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: The current level of detail C with 0 <= C <= getMaximumLOD().
getLogFileName() - Static method in class gov.nih.mipav.view.LogStdStreams: Get the name of the logfile.
getLogLevel(int) - Method in class gov.nih.mipav.view.Preferences.LogConfig
getLogMagDisplay() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the boolean indicating if log magnitude displays are used in complex images.
getLogStream() - Static method in class gov.nih.mipav.view.LogStdStreams: Get the PrintStream being used for this logfile.
getLong(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: Reads eight unsigned bytes from file.
getLong(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads eight unsigned bytes from file.
getLong(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads eight unsigned bytes from file.
getLong(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a long, if possible.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a long value at position in the data array.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in long format.
getLong(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking.
getLong(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getLong(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getLong(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Integer or an array of Integer as needed by the tag's VM.
getLong(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getLong(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getLong(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the long value of one of the parameters from the table.
getLong64(byte[], int, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
getLongBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getLongBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the long buffer (image).
getLongExposureNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getLongExposureNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getLongFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getLongitude() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
getLongitude(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getLongitude(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getLongitudinalAnatomicalReference() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getLongName() - Method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
getLongObject(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a long.
getLongTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that performs tri-linear interpoloation.
GetLossFunctionForResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
getLow() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getLowerBound() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the lower bound slider.
getLowerBound() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Accessor to the lower bound slider.
getLowerBound() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the lower bound text as a number.
getLowerBound() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the lower bound slider.
getLowerBoundB() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the lower bound blue slider.
getLowerBoundB() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getLowerBoundB() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the lower bound text as a number.
getLowerBoundB() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the lower bound blue slider.
getLowerBoundG() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the lower bound green slider.
getLowerBoundG() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getLowerBoundG() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the lower bound text as a number.
getLowerBoundG() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the lower bound green slider.
getLowerBoundR() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the lower bound red slider.
getLowerBoundR() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getLowerBoundR() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the lower bound text as a number.
getLowerBoundR() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the lower bound red slider.
getLowerList() - Method in class gov.nih.mipav.view.JPanelListController: Convience method to get list B.
getLowerThreshold() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns the lower threshold image value for whichever image is current selected.
getLowerThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram
getLowerThreshold() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
getLowerThreshold() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Returns the lower threshold value.
getLowerThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Returns the lower threshold value.
getLowerTree() - Method in class gov.nih.mipav.view.JPanelTreeController: Convience method to get Tree B.
getLowOP() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getLowOP2() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getLowValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: DOCUMENT ME!
getLowXmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the lowest x location in millimeters.
getLowYmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the lowest Y location in millimeters.
getLowZmm() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the lowest Z location in millimeters.
getLPSOrigin() - Method in class gov.nih.mipav.model.file.FileInfoBase: DOCUMENT ME!
getLSCompleted() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Accessor that returns whether or not the algorithm successfully completed.
getLumaBlue() - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
getLumaBlue() - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
getLumaGreen() - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
getLumaGreen() - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
getLumaRed() - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
getLumaRed() - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
getLuminance() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getLuminance(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getLUT() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the LUT.
getLUT() - Method in class gov.nih.mipav.model.file.FileInfoDicom: returns the ModelLUT, if there, which might be specified by the 0028,1201, 0028,1202, 0028,1203 tags.
getLUT() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
getLUT() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Return the current ModelLUT:.
getLUT() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

This method returns the current LUT.
getLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Return the current ModelLUT.
getLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Volume RGBT.
getLUT() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Get the lookup table associated with the image and histogram.
getLUT() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

This method returns the current LUT.
getLUT() - Method in class gov.nih.mipav.view.ViewOpenFileUI: Returns the model LUT from the file.
GetLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the ModelImage LUT.
getLUT2() - Method in class gov.nih.mipav.view.ViewOpenFileUI: Returns the model LUT2 from the file.
getLUTa() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getLUTa() - Method in class gov.nih.mipav.view.PatientSlice: Accessor that returns the LUT for image A.
getLUTa() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Accessor that gets the model LUT for image A.
getLUTa() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the model lut for the image A.
getLUTa() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns the model lut for the imageA.
getLUTa() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the imageA histo component lut.
getLUTa() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the model lut for the imageA.
getLUTa() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns LUTa.
getLUTa() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the imageA histo component lut.
getLUTb() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getLUTb() - Method in class gov.nih.mipav.view.PatientSlice: Accessor that returns the LUT for image B.
getLUTb() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the model lut for the image B.
getLUTb() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns the model lut for the imageB.
getLUTb() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the imageB histo component lut.
getLUTb() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the model lut for the imageB.
getLUTb() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns LUTb.
getLUTb() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the imageB histo component lut.
getLUTComponent() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Get the LUT component.
getLUTComponentA() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the imageA LUT.
getLUTComponentA() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Get the imageA LUT.
getLUTComponentA() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the imageA LUT.
getLUTComponentB() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Get the imageB LUT.
getLUTComponentB() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Get the imageB LUT.
getLUTComponentB() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the imageB LUT.
getLUTDialog() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Deprecated.
getLUTDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the LUT panel (only should be used with grayscale images).
getLUTIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the index of the color look-up table color map.
GetLUTIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Returns the index of the color look-up table color map.
getLUTPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getLUTRecorder() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Get the JDialogRecordLUT reference from ViewJPanelLUT.
getLUTRecorder() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Get the LUT recorder reference.
getLUTRecorder() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Get the LUT recorder reference.
getLUTType() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor to get LUT type.
getM_akLev() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
getM_kMultiHistogram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
getM0ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
getM0ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
getMacroDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getMacroDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getMacroDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getMacroLedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getMacroModeCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getMacroModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getMacroModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getMacroModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getMacroModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getMagData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Returns reference to magnitude data array.
getMagData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to magnitude data array.
getMagicFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getMagMax() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the maximum magnification of the image.
getMagMin() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the minimum magnificaiton of the image.
getMagneticFieldStrength() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getMagnification() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the present magnification of the image.
getMagnitude() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getMainBox() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
getMainBox() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
getMainFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor that returns the main user interface frame.
getMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Get the dialog main panel.
getMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: returns the mainPanel so this interface can be displayed inside another panel.
getMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: DOCUMENT ME!
getMainPanel() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Get the main control Panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Sets up the GUI (panels, buttons, etc) and displays it on the screen.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Get the main control panel interface.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Return the main surface panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns the mainPanel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Returns the contentPane of this dialog.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: DOCUMENT ME!
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Get the control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Each panel class extends their own get the main control panel method.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Return the main panel display.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Get the main control Panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Return the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Get the main control panel.
getMainPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
getMainPanel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Deprecated.
getMainPanel(String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Initializes GUI components and displays dialog.
getMajorAxis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the major axis of VOI (only valid for 2D object); return major axis length of the VOI.
getMakernoteThumbVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDescriptor
getMakernoteVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getMakernoteVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getMakernoteVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getMakernoteVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getManometerPressureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getManometerReadingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getManualFlashDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getManualFlashOutputDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getManualFlashStrengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getManufacturer() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getManufacturerModelName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getMarkerType() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the marker type.
getMarksFlag() - Method in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
getMarksFlags() - Method in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
getMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Gets the Bitset mask object.
getMask() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns.
getMask() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the burning sphere or ellipsoid mask.
getMask() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the surface mask data
getMask(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the mask value at pixel (x,y).
getMask(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the mask value at voxel (x,y,z).
getMaskBU() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns.
getMaskExtents() - Method in class gov.nih.mipav.model.file.FileInfoSPAR
getMaskImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
getMaskPositions() - Method in class gov.nih.mipav.model.structures.VOIBase
getMaskTreeSet(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Determines the intensities of image B.....populates the treeset and returns it.
getMatchOrients() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
getMatchOrigins() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
getMaterial() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D: Returns the material properties for the surface:
getMaterial() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D: Returns the material properties for the surface:
getMaterial() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Gets the material properties of the mesh:
getMaterial() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns a new copy of the Material.
getMaterial() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Returns the material properties for the surface:.
getMaterial() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM: Returns the material properties for the surface:.
getMaterial(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the material properties of the given surface.
getMaterial(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the material properties of the given surface.
GetMaterial() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the surface material properties.
GetMaterialState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Called from the JPanelDisplay dialog.
getMatrices() - Method in class gov.nih.mipav.model.structures.MatrixHolder: Gets a cloned copy of the image's matrices stored in a vector.
getMatrix() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best transformation.
getMatrix() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best transformation.
getMatrix() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the matrix representing the best transformation.
getMatrix() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the matrix associated with the FileInfo.
getMatrix() - Method in class gov.nih.mipav.model.file.FileInfoMGH
getMatrix() - Method in class gov.nih.mipav.model.file.FileInfoOME: Gets the transition matrix.
getMatrix() - Method in class gov.nih.mipav.model.file.FileNIFTI
getMatrix() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns transformation matrix.
getMatrix() - Method in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: Returns the matrix.
getMatrix(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best transformation.
getMatrix(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the matrix representing the best transformation.
getMatrix(double[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
getMatrix(double[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
getMatrix(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best transformation.
getMatrix(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Obtain the transformation vector and convert to the matrix representation.
getMatrix(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Obtain the transformation vector and convert to the matrix representation.
getMatrix(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Obtain the transformation vector and convert to the matrix representation.
getMatrix(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
getMatrix(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
getMatrix(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Obtain the transformation vector and convert to the matrix representation, then scale the translation by sample.
getMatrix(int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
getMatrix(int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
getMatrix(DTIParameters) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
getMatrix(Object) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Accessor that gets a matrix based on the key (for the linkedhashmap)
getMatrix2() - Method in class gov.nih.mipav.model.file.FileNIFTI
getMatrixHalf() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixHalf() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixHalf(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixHalf(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixHalf(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Obtain the transformation vector, scale it by 0.5, then convert it to transformation matrix.
getMatrixHalf(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Obtain the transformation vector, scale it by 0.5, then convert it to transformation matrix.
getMatrixHalf(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Obtain the transformation vector, scale it by 0.5, then convert it to transformation matrix and scale the translations by sample parameter.
getMatrixHalf(int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Obtain the transformation vector, scale it by 0.5, then convert it to transformation matrix and scale the translations by sample parameter.
getMatrixHolder() - Method in class gov.nih.mipav.model.structures.ModelImage: DOCUMENT ME!
getMatrixMap() - Method in class gov.nih.mipav.model.structures.MatrixHolder: Gets the matrix map.
getMatrixMidsagittal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixMidsagittal(int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Accessor that returns the matrix representing the best tranformation.
getMatrixSize1() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getMatrixSize2() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getmax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
getMax() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
getMax() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getMax() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getMax() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns max pixel value of the image.
getMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum value in the dataArray.
getMax() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
getMax(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: gets the image max based on 1st) whether or not the image is color. 2) the color.
getMaxA() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum alpha value in the dataArray.
getMaxAdvectionChange() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the maximum advection change allowed in the PDE solver update.
getMaxAdvPropTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the maximum advection-propagation time step.
getMaxApertureAtFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getMaxApertureAtMaxFocalDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getMaxApertureAtMinFocalDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getMaxApertureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getMaxApertureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
getMaxApertureValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getMaxAverageConvexity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
getMaxAvrConvexity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMaxB() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns max blue pixel value of the image.
getMaxB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum blue value in the dataArray.
getMaxBound() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The maximum of the x-, y-, and z-dimensions of the image.
getMaxBoundaryDistance() - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Access the maximum distance of any "inside" point to the boundary.
getMaxCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: return the max mean curvature:
getMaxCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: return the max mean curvature:
getMaxCurvatureChange() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the maximum curvature change allowed in the PDE solver update.
getMaxCurvatures() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getMaxCurvatureTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the maximum curvature time step.
getMaxDebugLines() - Static method in class gov.nih.mipav.view.Preferences
getMaxDepth() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the maximum depth, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.
getMaxDepth() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Gets the maximum depth stored in this trie.
getMaxDim() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getMaxDim() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
getMaxDirections() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getMaxDistance() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that returns the maximum distance from the seed point to a point in the object.
getMaxDistance() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder.
getMaxDistance() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor that returns the maximum distance from the seed point to a point in the object.
getMaxDistance() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMaxDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getMaxEntropyThreshold() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the maximum entropy threshold.
GetMaxExtent() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
getMaxExtents() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getMaxG() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns max green pixel value of the image.
getMaxG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum green value in the dataArray.
getMaxHeapMemory() - Static method in class gov.nih.mipav.view.MipavUtil: Return the maximum amount of heap memory that MIPAV can use.
getMaximumIgnore() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the maximum of the range of intensities to ignore.
getMaximumIgnoreB() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the maximum of the range of blue intensities to ignore.
getMaximumIgnoreG() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the maximum of the range of green intensities to ignore.
getMaximumIgnoreR() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the maximum of the range of red intensities to ignore.
getMaximumLOD() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: The maximum level of detail supported by the mesh.
getMaximumPixelCount() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getMaximumPixelCountInGroup() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getMaximumRRInterval() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getMaximumSize() - Method in class gov.nih.mipav.view.BarMeter: Maximum size of this panel.
getMaximumSize() - Method in class gov.nih.mipav.view.LineMeter: returns the panels maximum size.
getMaximumTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur2: Get the maximum time step for numerical stabilty of the filter.
getMaximumTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur3: Get the maximum time step for numerical stabilty of the filter.
getMaxIntensity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the maximum intensity of the VOI return average intensity of image defined by the VOI.
getMaxIntensity() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getMaxIntensityBlue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the maximum intensity of the Blue channel for the VOI return average intensity of image defined by the VOI.
getMaxIntensityGreen() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the maximum intensity of the Green channel for the VOI return average intensity of image defined by the VOI.
getMaxIntensityRed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the maximum intensity of the Red channel for the VOI return average intensity of image defined by the VOI.
getMaxIterations() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
getMaxIterations() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
getMaxIterations() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getMaxIterations() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get maxIterations.
getMaxKernelWorkGroupSize(CLDevice[]) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getMaxLength() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength: Accessor that returns the maximum sublength.
getMaxLines() - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
getMaxM0() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getMaxMeanCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMaxMeanCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getMaxMemAllocSize(long[]) - Static method in class gov.nih.mipav.model.algorithms.OpenCLInfo
getMaxMemoryUsed(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Determines the amount of memory used for the OpenCL buffers required for the gaussian kernels for the given sigmas.
getMaxMemoryUsed(int, int, float[]) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase: Determines the amount of memory used for the OpenCL buffers required for the gaussian kernels for the given sigmas.
getMaxNumUniqueValues() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getMaxProgressValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns the max progress value.
getMaxPropagationChange() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the maximum propagation change allowed in the PDE solver update.
getMaxQuantity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The maximum quantity of elements in the set.
getMaxQuantity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The maximum quantity of elements in the set.
getMaxQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The maximum quantity of elements in the set.
getMaxQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The maximum quantity of elements in the set.
getMaxR() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns max red pixel value of the image.
getMaxR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum red value in the dataArray.
getMaxRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the current maximum point for the range.
getMaxRenExtent() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: DOCUMENT ME!
getMaxSize() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that returns the maximum size of the object.
getMaxSize() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder.
getMaxSize() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor that returns the maximum size of the object.
getMaxT2() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getMaxTime() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the maximum visitation time for the image elements.
getMaxutil() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getMaxValuesChange() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF
GetMCIsoEdges(OctNode, HashMap<Long, Integer>, HashMap<Long, Integer>, int, Vector<Pair<Long, Long>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetMCIsoTriangles(float, CoredMeshData, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetMCIsoTriangles(OctNode, CoredMeshData, HashMap<Long, Integer>, HashMap<Long, Integer>, Vector<Point3D>, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetMCIsoTriangles(Float, int, CoredMeshData, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getmctype(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
getmdbglvl(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
getMean() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the mean pixel intensity.
getMean(int, float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
getMeanCurvature() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getMeanCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMeanCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getMeanCurvatures() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the array of mean curvature values at each vertex.
getMeanCurvaturesLUT() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Access the pseudocolor mapping specified to use when rendering the computed mean curvatures values for the specified surface.
getMeanNegativeCurvature() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getMeasuredLvDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getMedian() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the median
getMedian(double[]) - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: get median of given array
getMedian(float[]) - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
getMedianB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the median of the Blue channel of image defined by the VOI.
getMedianG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the median of the Green channel of image defined by the VOI.
getMedianIntensity(ModelImage, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
getMedianR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the median of the Red channel of image defined by the VOI.
getMedianStatistics(AlgorithmVOIProps.Calc34D.ContourStats) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the median statistics for a grayscale image.
getMedianStatisticsRGB(AlgorithmVOIProps.Calc34D.ContourStats) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the median statistics for a color image.
getMedium() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getMediumOP() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getMediumOP2() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
getMedVisionDouble(boolean) - Method in class gov.nih.mipav.model.file.FileMedVision: getMedVisionDouble - extracts double value from MedVision MAC resource fork.
getMenuBar(ActionListener, int, int, boolean) - Method in class gov.nih.mipav.view.ViewMenuBar: Creates general menus based on dimensionality and data type (byte, short, argb, etc) of image and attaches them to a menu bar.
getMenuBuilder() - Method in class gov.nih.mipav.view.ViewUserInterface: Returns the interface's menu builder.
getMenuComponent(int) - Method in class gov.nih.mipav.view.JScrollMenu
getMenuComponentCount() - Method in class gov.nih.mipav.view.JScrollMenu
getMenuComponents() - Method in class gov.nih.mipav.view.JScrollMenu
getMenuItem(String) - Method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
getMergeThreshold() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getMesh() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
getMesh() - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D: Returns the ModelTriangleMesh representing the surface:
getMesh() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Accessor for the triangle mesh that corresponds to the current level of detail in the ModelClodMesh.
getMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Display the mesh in the SurfaceRenderer:
getMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the array of ModelTriangleMesh objects.
getMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
getMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
GetMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Return the TriMesh object (if, any) associated with this object.
GetMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
getMeshLines() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Display the mesh lines in the SurfaceRenderer:
getMeshLines() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
getMessage() - Method in enum gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
getMessage() - Method in class gov.nih.mipav.view.ProgressChangeEvent: Returns the progress message
getMessage(int, int, long) - Static method in exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
getMessageBar() - Method in class gov.nih.mipav.view.ViewJProgressBar: Get the message label.
getMessageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor that returns the message frame.
getMessageText() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to get text of message field.
getMetadata() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
getMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDescriptor
getMetric(ModelSurfaceTopology.Edge, ModelSurfaceTopology.EdgeAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: Computes the weight associated with an edge.
getMicroSecPerFrame() - Method in class gov.nih.mipav.model.file.FileAvi
getMicroSecPerFrame() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getMimeType() - Method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
getMin() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getMin() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns min pixel value of the image.
getMin() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum value in the dataArray.
getMin() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
getMin(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: gets the image max based on 1st) whether or not the image is color. 2) the color.
getMinA() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum alpha value in the dataArray.
getMinAllowableMajorTickSpacing() - Method in class gov.nih.mipav.view.ViewJSlider
getMinAllowableMinorTickSpacing() - Method in class gov.nih.mipav.view.ViewJSlider
getMinApertureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getMinAverageConvexity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
getMinAvrConvexity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMinB() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns min blue pixel value of the image.
getMinB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum blue value in the dataArray.
getMinBound() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The minimum of the x-, y-, and z-dimensions of the image.
getMinBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
getMincModality(int) - Static method in class gov.nih.mipav.model.file.FileMinc: Get the minc modality string from the mipav modality type.
getMincSliceThickness() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Return the slice thickness value stored in the minc header (var = 'acquisition', attrib = 'slice_thickness').
getMinCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: return the min mean curvature:
getMinCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: return the min mean curvature:
getMinCurvatures() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getMinDirections() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getMinDistance() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMinDistance(int, BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility: Calculates the distance between the closest point in this BitSet and the given value.
getMinDistance(int, Vector<Point3D>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility: Calculates the distance between the closest point in this Vector and the given value.
getMinDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getMinG() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns min green pixel value of the image.
getMinG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: getMinG - Accessor that returns the minimum green value in the dataArray.
getMinimumDelay() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getMinimumIgnore() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the minimum of the range of intensities to ignore.
getMinimumIgnoreB() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the minimum of the range of blue intensities to ignore.
getMinimumIgnoreG() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the minimum of the range of green intensities to ignore.
getMinimumIgnoreR() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the minimum of the range of red intensities to ignore.
getMinimumRRInterval() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getMinimumSize() - Method in class gov.nih.mipav.view.BarMeter: Minimum size of this panel.
getMinimumSize() - Method in class gov.nih.mipav.view.LineMeter: returns the displays minimum size.
getMinimumSize() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Gets minimum size equal to object size.
getMinimumSize() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that returns the minimum size of this component.
getMinimumSize() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Gets minimum size equal to object size.
getMinIntensity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the minimum intensity of the VOI return average intensity of image defined by the VOI.
getMinIntensity() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getMinIntensityBlue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the minimum intensity of the Blue channel for the VOI return average intensity of image defined by the VOI.
getMinIntensityGreen() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the minimum intensity of the Green channel for the VOI return average intensity of image defined by the VOI.
getMinIntensityRed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the minimum intensity of the Red channel for the VOI return average intensity of image defined by the VOI.
getminmax(double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the max and min of an array
getminmax(double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Compute the max and min of an array
getMinMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Returns the min/max bounding box coordinates for the mesh in volume-index coordinates.
getMinMaxValues(double[], double[], Vector<Integer>, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getMinMeanCurvature() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getMinMeanCurvature() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getMinNodeSize() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getMinorAxis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the minor axis of VOI (only valid for 2D object); return minor axis length of the VOI.
getMinorTickMarksVisible() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag.
getMinProgressValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns the min progress value.
getMinR() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns min red pixel value of the image.
getMinR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum red value in the dataArray.
getMinRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Returns the current minimum point for the range.
getMinTime() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the minimum visitation time for the image elements.
getMinUnused(Vector<Integer>) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Gets a new fiber bundle index.
getMinutes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
getMipavOrderFromDimNode(String) - Method in class gov.nih.mipav.model.file.FileMincHDF: Gets the proper MIPAV dimension ordering index for a given Minc dim node string using the image info.
getMipavProps() - Static method in class gov.nih.mipav.view.Preferences
getMipavVersion() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getmiptype(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
getMIPZValue(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Gets the Z value where a pixel in the MIP image occurred in the volume.
getMJPEGQuality() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getMJPEGQuality() - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Accessor for m-jpeg quality.
getMJPEGQuality() - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Accessor for m-jpeg quality.
getMnemonic() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
getmobjtype(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
getModality() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the modality.
getModality(FileDicom) - Method in class gov.nih.mipav.model.file.FileIO: Gets the value of the Dicom modality tag, 0008,0060.
getModalityFromDicomStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoDicom: Returns the MIPAV modality constant for a given DICOM modality string.
getModalityFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the modality associated with a string.
getModalityStr() - Static method in class gov.nih.mipav.model.file.FileInfoBase: Return all the modality strings as an array.
getModalityStr(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Return the string associated with a modality.
getModalityString() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getMode() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode
getMode() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the mode of the pixel intensities.
getMode() - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
getMode() - Method in class gov.nih.mipav.view.JPanelHistogram
getMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the mouse pointer mode at the beginning of events.
getMode() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: Returns the type of box being drawn, x,y, or z slice:
getMode() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the mouse pointer mode at the beginning of events.
getMode() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Get the histogram mode (ie - RED, GREEN, BLUE ).
getMode() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Get the histogram mode (ie - RED, GREEN, BLUE ).
getModeB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Blue channel of image defined by the VOI.
getModeCount() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode
getModeCountB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Blue channel of image defined by the VOI.
getModeCountG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Green channel of image defined by the VOI.
getModeCountR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Red channel of image defined by the VOI.
getModeG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Green channel of image defined by the VOI.
getModel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Gets the table model.
getModel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Gets the table model.
getModel() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Get the built AAM model
getModel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
getModel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
getModelColor(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Display the ModelImage color in the JDialogPaintGrow interface.
getModelDirections(ModelStorageBase) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Returns the direction vectors for displaying the surface so that it aligns properly with the input ModelImage.
getModelHistogram() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Accessor to the histogram.
getModelImageColor(ModelImage, float, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Given a triangle vertex point from a ModelTriangleMesh, determines the corresponding ModelImage index point, and recreates the color that would have originally been assigned to the vertex.
getModelImagePoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Given a triangle vertex point from a ModelTriangleMesh, determines the corresponding ModelImage index point.
getModelLUT() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileAfni
getModelLUT() - Method in class gov.nih.mipav.model.file.FileAvi: Returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileBMP: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileBRUKER: returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileCOR: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileDM3: returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileFits: returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileICS: getModelLUT - returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileImageXML: Gets the LUT.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileInterfile: Returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileIO: Returns LUT associated with the image file.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileJP2
getModelLUT() - Method in class gov.nih.mipav.model.file.FileLIFF: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileLSM: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Returns null.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileMATLAB: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileMRC: returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileSTK: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileSVS: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileTiff: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileTMG: returns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.model.file.FileZVI: Rreturns LUT if defined.
getModelLUT() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
getModelLUT() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: Get access to the associated ModelLUT instance.
getModelLUT() - Method in class gov.nih.mipav.view.ViewJComponentLUT: Returns the model LUT.
getModelLUT() - Method in class gov.nih.mipav.view.ViewJComponentLUTTable: Returns the model LUT.
getModelLUTArray() - Method in class gov.nih.mipav.model.file.FileJSON: returns LUT if defined.
getModelRGB() - Method in class gov.nih.mipav.model.file.FileImageXML: Gets the modelRGB.
getModelRGB() - Method in class gov.nih.mipav.model.file.FileIO: Gets the model RGB.
getModelToView() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getModeR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the mode of the Red channel of image defined by the VOI.
getModifiedSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getModifyFlag() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getMonths() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
getMonthsBefore(Calendar, int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Returns the new date of num months before date.
getMouseControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Return mouseDialog from parent frame.
getMouseDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return mousePanel from parent frame.
getMouseDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return mousePanel from parent frame.
getMouseEvents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the mouse events vector.
getMouseEvents() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the mouse events vector.
getMouseInput - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
getMouseMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Accessor that returns the current mouse mode of the dialog.
getMouseMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Gets the mouse pointer mode - standard or fly - from the view dialog.
getMouseMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Gets the mouse pointer mode - standard or fly - from the view dialog.
getMouseMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Gets the mouse pointer mode - standard or fly - from the view dialog.
getMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the mouse recorder control panel.
getMovingSliderValue() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getMRAcquisitionType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getMRIProcessName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getmrtype(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
getMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Accessor to the the message ID.
getMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move: Accessor to get the message ID for the current message.
getMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query: getMsgID - This returns the msgID for the outgoing C-Move Request.
getMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: Returns the msgID for the outgoing C-Move Request.
getMtry() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getMu() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
getMu() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the negative scale factor mu.
getMultiFile() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns whether or not the image is in multiple files (tiff).
getMultiHistoEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getMultiHistogramFile(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
getMultiHistogramFunctions() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Returns the combined GLSL code and support functions for the histogram widgets.
getMultipleExposureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getMustUseIndex() - Method in class gov.nih.mipav.model.file.FileAvi
getName() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Return the name of the particular registration measure.
getName() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Return the name of the particular registration measure.
getName() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Return the name of the particular registration measure.
getName() - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Return the name of the particular registration measure.
getName() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return the name of this tag.
getName() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the real world name of this tag.
getName() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Gets name.
getName() - Method in class gov.nih.mipav.model.file.FileUtility.nameSliceItem
getName() - Method in class gov.nih.mipav.model.file.FileXML.XMLAttributes
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Provides the name of the directory, for display purposes.
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifImageDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifInteropDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory
getName() - Method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory
getName() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MockDirectory
getName() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's name.
getName() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Get the simple image name
getName() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the name of the VOI.
getName() - Method in class gov.nih.mipav.model.structures.VOIBase: Gets the name of the VOI that contains this contour, null if this contour is not contained in a VOI.
getName() - Method in interface gov.nih.mipav.plugins.BundledPlugInInfo: Returns the name of the plug-in.
getName() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getName() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
getName() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getName() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getName() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: Accessor that returns the name entered in this dialog.
getName() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Get the text field string.
getName() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Get the text field string.
getName() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the current vector title name.
getName() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Returns the file name of the surface, if the surface was loaded from file.
getName() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the current vector title name.
getName() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
getName() - Method in class gov.nih.mipav.view.ViewFileTreeNode: The name of the FileNode, as taken from its File.
getName() - Method in class gov.nih.mipav.view.ViewMenuBuilder.MipavMenuItem: DOCUMENT ME!
getName() - Method in class gov.nih.mipav.view.VOIContourNode: the string returned is the name of the VOI returns the name of the VOI if the VOI exists, or null if it doesn't.
getName() - Method in class gov.nih.mipav.view.VOIFrameNode: the string returned is the name of the VOI returns the name of the VOI if the VOI exists, or null if it doesn't.
getName() - Method in class gov.nih.mipav.view.VOIGroupNode: the string returned is the name of the VOI returns the name of the VOI if the VOI exists, or null if it doesn't.
getName() - Method in class gov.nih.mipav.view.VOIOrientationNode: the string returned is the name of the VOI returns the name of the VOI if the VOI exists, or null if it doesn't.
getName(Covdet.VlCovDetMethod) - Method in class gov.nih.mipav.model.algorithms.Covdet
getName(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Find the realworld name of the tag given by the key in the hashtable.
GetName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
GetName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode
GetName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Return the name of this object.
GetName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
GetName() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
getNameDefault() - Static method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
getNameField() - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
getNameList() - Method in class gov.nih.mipav.view.JPanelChecklist: Returns a new list of the tag names of all checkboxes selected.
getNamesCompatibleTargetImages(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Find the frame images that are compatible as targets with the specified source image for the purpose of B-spline registration.
getNativeLibTmpDir() - Static method in class gov.nih.mipav.util.NativeLibraryLoader
getNaviCheckBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Get the navigation checkbox, fly-thru checkbox
getNavigationGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the navigation mode interface panel.
getNColors() - Method in class gov.nih.mipav.view.dialogs.JDialogNColors: Accessor to get the number of colors.
getNDARData() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Retrieves the NDAR data for use in populating XML fields
getNdFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getNDims() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the dimensionality of the image.
getNear() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the distance from the eye point to the view plane.
getNearBoundPoint() - Method in class gov.nih.mipav.model.structures.VOIBase
getNearestLeaf(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
getNearestNeighborPos2D(float, float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Translates a point from the result image to the source image.
getNearestNeighborPos3D(float, float, float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Translates a point from the result image to the source image.
getNearestNeighbours(AlgorithmMeanShiftClustering.famsPoint, AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_cut[][], AlgorithmMeanShiftClustering.fams_res_cont, int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
getNearestNeighbours2H(int[], AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_cut[][], AlgorithmMeanShiftClustering.fams_res_cont, int[][], AlgorithmMeanShiftClustering.fams_hash_entry2[][], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
getNearPlane() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Get the near plane
getNearPoint() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the point on the curve nearest the cursor, calculated by nearLine, etc.
getNEFCompressionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getNegGradientImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Get the negative of the gradient.
getNegGradientImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Get the negative of the gradient.
getNeigbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getNeighborList(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getNeighborList(int, int, float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getNeighbors(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey
getNeighbors(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey2
getNeighbourCount() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getNeighbourCount() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getNeighbourLink() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
getNeighbourLink() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
getNeighbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
getNeighbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
getNel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
getNeval() - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
getNeval() - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
getNewAdjustedImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Gets the new adjusted image created.
getNewFrameLocation(int, int) - Method in class gov.nih.mipav.view.ViewUserInterface: Changes location of image when first displayed.
getNewFrameYLocation() - Method in class gov.nih.mipav.view.ViewUserInterface: Changes vertical location of image when first displayed.
getNewIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is potentially moved to the array location vacated by the removed element.
getNewIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is potentially moved to the array location vacated by the removed element.
getNewIndex() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is potentially moved to the array location vacated by the removed element.
getNewIndex() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is potentially moved to the array location vacated by the removed element.
getNewInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Calculates the new slice thickness (newThick), number of times to repeat each original image (numRepIm), the number of blanks to insert between the image duplicates (numBlank), and the new z coordinate origin for the image volume (newZStart).
getNewOrientBox() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
getNewReferenceImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Gets the new reference image created.
getNewSubfileTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getNewSurfaceColor(int) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: static function returns the next default surface color, based on the current number of surfaces displayed.
getNewSurfaceColor(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: static function returns the next default surface color, based on the current number of surfaces displayed.
getNewXs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getNewXs - accessor that gets the array of x coordinates to be plotted; used by the graphics for the actual plotting of the graph.
getNewXsLength() - Method in class gov.nih.mipav.view.ViewJComponentFunct: Accessor that gets the number of x coordinates to be plotted.
getNewYs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getNewYs - accessor that gets the array of y coordinates to be plotted used by the graphics for the actual plotting of the graph.
getNewYsLength() - Method in class gov.nih.mipav.view.ViewJComponentFunct: Accessor that gets the number of y coordinates to be plotted.
getNext() - Method in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: Gets the next byte, skipping over 0s padded in after FF.
getNextCode() - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Returns the next 9, 10, 11 or 12 bits.
getNextElem(int, boolean) - Method in class gov.nih.mipav.model.file.FileMinc: Gets the next element, switching on the type.
getNextElement(boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Increments the location, then reads the elementWord, groupWord, and elementLength.
getNextHostKey() - Static method in class gov.nih.mipav.view.Preferences: Returns the next host key.
getNextServerKey() - Static method in class gov.nih.mipav.view.Preferences: Returns the next server key.
getNextStorageKey() - Static method in class gov.nih.mipav.view.Preferences: Returns the next storage key.
getNextTag(boolean) - Method in class gov.nih.mipav.model.file.FileDicom
getNextVOIPath(String) - Method in class gov.nih.mipav.model.scripting.VOITable: Returns the path to the next VOI which should be opened for a given image.
getNfa_phase0() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getNfa_phase180() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getNiceDICOMTags() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
getNIFTICompositeMatrices() - Method in class gov.nih.mipav.model.structures.MatrixHolder: Returns up to two composite TransMatrices that are NIFTI specific
getNIFTIExtension() - Method in class gov.nih.mipav.model.file.FileWriteOptions
getNil() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getNImages() - Method in class gov.nih.mipav.model.file.FileRaw: Accessor that returns the number of image slices saved.
getNMIGradients(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getNode(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
GetNode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode: Return the scene-graph Node.
GetNode(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Sets blending between imageA and imageB.
getNodeColor(int) - Static method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
getNodeColor(Node, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Finds the current color for the input level of the tree.
getNodeList() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
getNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
getNodeType() - Method in class gov.nih.mipav.view.dialogs.ScriptTreeNode
getNoiseFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getNoiseReduction2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getNoiseScale() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getNoLogMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum value without log processing in the dataArray.
getNoLogMin() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum value without log processing in the dataArray.
getNoLogMinNonZero() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum nonzero value without log processing in the dataArray.
getNomRangeBits(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns the number of bits corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
getNomRangeBits(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Returns the number of bits corresponding to the nominal range of the data in the specified component.
getNonZeroMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude negative value in the dataArray.
getNonZeroMaxB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum nonzero blue value in the dataArray.
getNonZeroMaxG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum nonzero green value in the dataArray.
getNonZeroMaxR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the maximum nonzero red value in the dataArray.
getNonZeroMin() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum nonzero value in the dataArray.
getNonZeroMinB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum nonzero blue value in the dataArray.
getNonZeroMinG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum nonzero green value in the dataArray.
getNonZeroMinR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the minimum nonzero red value in the dataArray.
getNorm_type(int) - Method in class gov.nih.mipav.model.algorithms.libdt
getNormal() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query current normal vector for vertex.
getNormal(ModelTriangleMesh, int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Calculates and returns the start point normal for a new starting point inside an existing triangle.
getNormal(ModelTriangleMesh, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Get the the triangle normal from the given triangle index.
getNormal(TriMesh, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Calculates and returns the start point normal for a new starting point inside an existing triangle.
getNormal(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Get the the triangle normal from the given triangle index.
getNormalCopy() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the normals of a triangle mesh.
getNormalCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getNormalizedPathDist() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the relative distance (in the [0,1] range) along the branch path from which the item was seen and annotated.
getNormalizedPathDist() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the relative distance (in the [0,1] range) along the branch path from which the item was seen and annotated.
getNormalizedPathDistance() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the normalized distance along the current path.
getNormalizedPathDistance() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the normalized distance along the current path.
getNormalizedPathDistance() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Get the normalized distance along the current path.
getNormalizedSigmas() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Returns the sigmas to use in the algorithm, with the z-dim normalized if the user has requested it.
getNormalizedXDim() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Called by the NavigationBehavior to get normalized bounding box, x dim
getNormalizedYDim() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Called by the NavigationBehavior to get normalized bounding box, y dim
getNormalizedZDim() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Called by the NavigationBehavior to get normalized bounding box, z dim
GetNormalMapTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Normal map Texture.
getNormals() - Static method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Get the normal vector arrays.
getNormals() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getNormals() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: derived quantites from the input mesh.
getNormals(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when reading the input surface.xml file: Parses the input string into a an array of Vector3f[], representing the mesh normals:
getNormalString(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when writing the surface.xml file: Converts the input array of Vector3f[] to a String for writing:
getNormalVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getNorth() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getNoSel(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getNoSplitVariables() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getNote() - Method in class gov.nih.mipav.model.structures.VOIText: Gets the contained note.
getNoteField() - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
getNotes() - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
getNrClass() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
getNrFeature() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
getNTimePeriods() - Method in class gov.nih.mipav.model.file.FileRaw: Accessor that returns the number of time periods saved.
getNullTerminatedBytes(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns the sequence of bytes punctuated by a \0 value.
getNullTerminatedBytes(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns the sequence of bytes punctuated by a \0 value.
getNullTerminatedString(int, int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Creates a String from the _data buffer starting at the specified index, and ending where byte=='\0' or where length==maxLength.
getNullTerminatedString(int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Creates a String from the stream, ending where byte=='\0' or where length==maxLength.
getNullTerminatedStringValue(int, int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getNullTerminatedStringValue(int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Creates a String from the stream, ending where byte=='\0' or where length==maxLength.
getnum() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
getNumberFormat() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getNumberMatchPts() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Gets the number of match points.
getNumberMatchPts25D(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Get number of match points 2.5 D.
getNumberOfAverages() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getNumberOfAverages() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getNumberOfComponents() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getNumberOfEchos() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getNumberOfElements() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Gets the number of elements in the data set (# of tags in item).
getNumberOfIndentationsCurvture() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getNumberOfIndentationsHull() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getNumberOfPhaseEncodingSteps() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getNumberOfRequiredVOIsForScriptImages() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getNumberOfTables() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
getNumberOfTablesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDescriptor
getNumberOfThreads() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
getNumberOfThreads() - Static method in class gov.nih.mipav.view.Preferences: The number of threads available for MIPAV for processing.
getNumberOfValues() - Method in class gov.nih.mipav.model.file.FileDicomTag: Provides the number of items held by the tag, as opposed the value specified by Value Multiplicity(VM).
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
getNumberOfVariables() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
getNumberOfVOIsRequiredForImageVar(String, String) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns the number of VOIs which will be opened for a given image (imageVarName) when a particular script is run.
getNumberOfXGridLines() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the number of gridlines for paint.
getNumberOfYGridLines() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the number of gridlines for paint.
getNumberSelected() - Method in class gov.nih.mipav.view.JPanelChecklist: This method finds the number of checked checkboxes in the list.
getNumberShapeParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Get the the number of eigen values in PCA.
getNumberTriangles() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets the number of triangles of the ModelTriangleMesh objects.
getNumberVisible() - Method in class gov.nih.mipav.view.JPanelChecklist: This method finds the number of enabled checkboxes in the list.
getNumBranches() - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Return the number of branches stored for this path graph.
getNumBurns() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the number of burns in this treatment's burn list.
getNumBytes() - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType
getNumCols() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getNumComponents() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getNumComponents() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getNumContours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
getNumDirections() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
getNumDirections() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
getNumerator() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the numerator.
getNumericValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType
getNumFrames() - Method in class gov.nih.mipav.model.file.FileInfoAvi: DOCUMENT ME!
getNumImages() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getNumIndependentVariables() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getNumItems() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Return the number of annotation items stored.
getNumItems() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Return the number of annotation items stored.
getNumIterations() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
getNumLights() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Get the number of lights.
getNumLights() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Get the number of lights.
getNumMinima() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getNumMinima() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get numMinima.
getNumOfBytesPerPixel(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Returns the number of bytes per pixel based on the data type.
getNumOfSlices() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getNumOperators() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
getNumOperators() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
getNumOperators() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
getNumParts() - Method in enum gov.nih.mipav.view.Preferences.ComplexDisplay
getNumPathPoints() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Returns the number of points in the geodesic curve.
getNumPathPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Returns the number of points in the geodesic curve.
getNumPixels() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getNumPixels
getNumPixels() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getNumPixelsB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getNumPixelsB
getNumPixelsG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getNumPixelsG
getNumPixelsR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getNumPixelsR
getNumPoints() - Method in class gov.nih.mipav.model.structures.VOI: Get the number of points in the VOI file.
getNumPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler
getNumPoints() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Finds the number of points in the active VOI contour.
getNumPoints() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Finds the number of points in the active VOI contour.
getNumPrev() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Get the number of samples along the current minimum cost path that preceed this sample in the volume.
getNumProp() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getNumPSets() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the # of parameter sets stored.
getNumRemoved() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: computes and returns the number of slices to remove.
getNumRows() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getNumSamples() - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Query the total number of samples for a volume with these parameters.
getNumSamplesOob() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getNumScalar() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getNumSlices() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getNumSurfaces() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the number of surfaces attached to the image.
getNumTotalSlices() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the number of images in the volume.
getNumTracts() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getNumTrees() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getNumTriangles() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the number of triangles used to defined the mesh.
getNumTSlices() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the number of time slices.
getNumUniqueDataValues(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getNumVertices() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the number of vertices used to define the mesh.
getNumVOIAdded() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
getNumVOIs() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get number of VOIs.
getNumVolumes() - Method in class gov.nih.mipav.model.file.DTIParameters
getNumVolumes() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getNumVoxels() - Method in class gov.nih.mipav.model.structures.VOIBase
getNumWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter: the number of weights
getnVOI() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the number of VOIs in the active image.
getnVOI() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the number of VOIs.
getNVoxels() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the the number of pixels return number of pixels defined by the VOI.
getObjBoxSlice_BG(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the X box color frame.
getObject(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the object hashed for the particular tag type specified, if available.
getObjectDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getObjectDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getObjectMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Get the 3D image that represents the extracted object.
getObjectNameDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getObjectParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the object parameters.
getObjectRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the object rotation matrix.
getObjects() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults
getObjPlane_BG(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Gets the objXYPlaneBG branch group.
getObjPlane_BG(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Gets the objXYPlaneBG branch group.
getObjTransXY() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Accessor that returns the reference to objTransXY.
getObliquePlane() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getObliqueReconstruction() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getObservedCardiacCycles() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getOffCentre() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getOffCentre() - Method in class gov.nih.mipav.model.file.FileInfoSPAR
getOffset() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getOffset() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF
getOffset() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the header offset.
getOffset() - Method in class gov.nih.mipav.model.file.FileMGH: Helper method to calculate the offset for getting only the middle NIFTI image slice from the 3D file.
getOffset() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getOffset() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
getOffset() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the offset.
getOffset(int, int[], int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculate and return the offset for the given image and time slice.
getOffset(FileInfoAnalyze) - Method in class gov.nih.mipav.model.file.FileAnalyze: Helper method to calculate the offset for getting only the middle analyze image slice from the 3D file.
getOffset(FileInfoImageXML) - Static method in class gov.nih.mipav.model.file.FileImageXML: Helper method to calculate the offset for getting only the middle analyze image slice from the 3D file.
getOffset(FileInfoNIFTI) - Method in class gov.nih.mipav.model.file.FileNIFTI: Helper method to calculate the offset for getting only the middle NIFTI image slice from the 3D file.
getOffset(FileInfoNRRD) - Method in class gov.nih.mipav.model.file.FileNRRD: Helper method to calculate the offset for getting only the middle NRRD image slice from the 3D file.
getOffset(FileInfoPARREC) - Method in class gov.nih.mipav.model.file.FilePARREC: Helper method to calculate the offset for getting only the middle analyze image slice from the 3D file.
getOffset(FileInfoSPM) - Method in class gov.nih.mipav.model.file.FileSPM: Helper method to calculate the offset for getting only the middle SPM image slice from the 3D file.
getOffset(ModelImage, int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Calculate and return the offset for the given image and time slice.
getOffset(ModelImage, int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculate and return the offset for the given image and time slice.
getOffsetXYZNeighbors27(Point3D[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill in the array of offsets to the 26-connected neighbors for any given sample in the volume.
getOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: makes the panel which displays the ok and cancel buttons.
getOldIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is moved to the array location vacated by the removed element.
getOldIndex() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is moved to the array location vacated by the removed element.
getOldIndex() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is moved to the array location vacated by the removed element.
getOldIndex() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: On a call to remove or removeAt, the last element in the array is moved to the array location vacated by the removed element.
getOlympusLightSourceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDescriptor
getOmax() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current omax value.
getOmax() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides current omax value.
getOmax() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides current omax value.
getOME() - Method in class gov.nih.mipav.model.file.FileInfoOME: DOCUMENT ME!
getOmega() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
getOmin() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current omin value.
getOmin() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides current omin value.
getOmin() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides current omin value.
getOneFile() - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: DOCUMENT ME!
getOneFile() - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: DOCUMENT ME!
getOneTailInvTStatsitic(int, double) - Static method in class gov.nih.mipav.model.algorithms.StatisticsTable: Finds the value of the one-tail t-statistic that produces the given level of significance for the given number of degrees of freedom.
getOneTouchWbDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getOnlyActive() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
getOobSampleIDs() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getOpacity() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Gets the opacity of the surface.
getOpacity() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Returns the surface opacity value.
getOpacity() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Returns the surface opacity value.
getOpacity() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getOpacity() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the opacity of the VOI.
getOpacity() - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Accessor that returns the new opacity.
getOpacity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the surface opacity
getOpacity() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns float opacity.
getOpacity() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the opacity used in alpha blending between the input image and the reference image.
getOpacity() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Accessor that returns the current opacity of the paint.
getOpacity(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
getOpacity(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the opacity properties of the given surface.
getOpacity(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the opacity properties of the given surface.
getOPACITY() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns float OPACITY.
getOPACITY() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Accessor that returns float OPACITY.
getOPACITY() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns float OPACITY.
getOPACITY() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns float OPACITY.
GetOpacity() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the surface opacity value.
getOpacityAfn(int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for image A.
getOpacityBfn(int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for image B.
getOpacityFn() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
getOpacityGM_Afn(int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for image A.
getOpacityGM_Bfn(int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for image B.
GetOpacityMapGMTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the gradient magnitude opacity transfer function Texture.
getOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getOpacitySlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Get the current surface opacity slider.
getOpacitySliderX() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the X opacity slider.
getOpacitySliderX() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the X opacity slider.
getOpacitySliderY() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the Y opacity slider.
getOpacitySliderY() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the Y opacity slider.
getOpacitySliderZ() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the Z opacity slider.
getOpacitySliderZ() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the Z opacity slider.
getOpacityTransferFunction() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
getOpenedFile() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Return the file being opened.
getOperator() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getOperatorFromLegacyNum(int) - Static method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
getOpName(int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Return the correct extension for the new image based on the given opType.
getOpticalZoomModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getOptimalZoom(int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Calculates the optimal zoom value for an image based on the two parameters desiredWidth and desiredHeight.
getOptimalZoomOnDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
GETOPTION(int[], METIS.moptions_et, int) - Method in class gov.nih.mipav.model.structures.jama.METIS
GETOPTION(int[], METIS.moptions_et, METIS.mctype_et) - Method in class gov.nih.mipav.model.structures.jama.METIS
GETOPTION(int[], METIS.moptions_et, METIS.miptype_et) - Method in class gov.nih.mipav.model.structures.jama.METIS
GETOPTION(int[], METIS.moptions_et, METIS.mobjtype_et) - Method in class gov.nih.mipav.model.structures.jama.METIS
GETOPTION(int[], METIS.moptions_et, METIS.mrtype_et) - Method in class gov.nih.mipav.model.structures.jama.METIS
getOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Accessor that returns the write options set up in this dialog.
getOptions() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the view control panel.
getOptionsPanel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the option control panel.
getOrCreateSegmentList(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData
GetOrderedParameterBlocks(CeresSolver.Program, int, Vector<CeresSolver.Pair<Integer, Integer>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
getOrgan() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getOrient() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Get the orientation of the quadric surface.
getOrient() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC
getOrientation() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current orientation value.
getOrientation() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getOrientation() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current orientation value.
getOrientation() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current orientation value.
getOrientation() - Method in class gov.nih.mipav.view.PatientSlice: This indicates which of the 3 tri-image components we are currently in; either AXIAL, SAGITTAL, or CORONAL.
getOrientation() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Accessor that returns the component's orientation either FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL, or FileInfoBase.UNKNOWN_ORIENT
getOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getOrientation() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the image's orientation.
getOrientationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getOrientationDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getOrientations() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
getOrigAC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets anterior comissure in original space.
getOrigDim() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets original dims.
getOrigImageOrientLabel() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Determines the image orienation in the forward direction...orig to acpc or acpc to tlrc.
getOrigin() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getOrigin() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the origin.
getOrigin() - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
getOrigin() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the origin of the image.
getOrigin(int) - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the origin value of the requested axis.
getOrigin(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the image origin for the image translated into the Patient-Coordinate systsm:
getOriginalCropCheckbox() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
getOriginalDataType() - Method in class gov.nih.mipav.model.file.FileInfoDicom
getOriginalDataType() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getOriginalDoCrop() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
getOriginalEnd() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
getOriginalEndianess() - Method in class gov.nih.mipav.model.file.FileInfoBase
getOriginalEpsilon() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getOriginalExtents() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the original extents of the image.
getOriginalFilterConstruction() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns integer telling filter construction method.
getOriginalFilterOrder() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns integer telling filter order. - TO BE MOVED
getOriginalInstitution() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getOriginalKernelDimension() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns kernel diameter chosen on forward FFT.
getOriginalPosteriorMargin() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns AC posterior margin marker point for +orig to +acpc transformation in dicom ordering using numbers not adjusted for resolution and origin.
getOriginalRs() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Decibels stopband is down in Elliptic
getOriginalScreenScale() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the original ScreenScale for orthographic projection:
getOriginalScreenScale() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the original ScreenScale for orthographic projection:
getOriginalSeriesNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getOriginalStart() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
getOriginalSuperiorEdge() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns AC superior edge marker point for +orig to +acpc transformation in dicom ordering using numbers not adjusted for resolution and origin.
getOriginalTransmissionReferenceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getOriginalXs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getOriginalXs - accessor that gets the array of x coordinates to be plotted; used by the zoom to reset the graph.
getOriginalYs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getOriginalYs - accessor that gets the array of y coordinates to be plotted used by the zoom for the rest of the graph.
getOriginatingProgramDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getOriginatingSystem() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getOriginator() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current originator string.
getOriginator() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current originator string.
getOriginAtSlice() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: Gets the origin of a particular slice; resets for the z dimension.
getOriginAtSlice() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X: Gets the origin of a particular slice; resets for the z dimension.
getOriginAtSlice(int) - Method in class gov.nih.mipav.model.file.FileInfoBase: Gets the origin of a particular slice; resets for the z dimension.
getOriginLoc() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getOrigOrient() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets the orienatations from original space.
getOrigOrientLabelsInverse() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: When going from acpc to orig or tlrc to orig, this method is used to determine what he new axis orienations.
getOrigOrigin() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets original origin.
getOrigPC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets posterior comissure in original space.
getOrigRes() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets resolution in original space.
getOS() - Static method in enum gov.nih.mipav.view.Preferences.OperatingSystem: Gets the operating system.
getOtsuThreshold() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the otsu threshold as calculated in AlgorithmThreshold.
getOutgoingEndian() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Returns constant indicating endianess of outgoing data.
getOutgoingSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Returns the outgoing data size.
getOutput() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
getOutput() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
getOutputBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Returns the output buffer
getOutputBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Returns the output buffer
getOutputBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
getOutputBuffer() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
getOutputDir() - Static method in class gov.nih.mipav.view.ViewUserInterface
getOutputDirectory() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Returns the output directory for the derived image calculations.
getOutputDirectory(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
getOutputImageName(String) - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.BlankJistHook
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
getOutputImageName(String) - Method in class gov.nih.mipav.view.dialogs.MTryJistHook
getOutputKind(ArrayList<Double[]>, int, double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
getOverallPredictionError() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getOverlayNames(boolean) - Static method in class gov.nih.mipav.view.Preferences: Retrieves the list of overlay names (user can type whatever).
getOverlayOn() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns if image/dicom overlay should be shown.
getOverlays(boolean) - Static method in class gov.nih.mipav.view.Preferences: Gets the image overlay codes (they identify what to display in the corners of the image), from the preference file.
getp1() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
getp2() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
getPackedColor(int) - Method in class gov.nih.mipav.model.structures.ModelImage: If no LUT or RGB color table is defined, this returns the packed int value for the color at iIndexs for the input ModelImage kImage:
getPad1() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getPad2() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getPadding(int) - Method in class gov.nih.mipav.model.file.FileMinc: Returns the amount of padding needed (to the nearest 4 byte boundary) after a variable of length size.
getPadding(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getpaintBitmap() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns BitSet paintBitmap.
getPaintBitmap() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getPaintBitmap() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns BitSet paintBitmap.
getpaintBitmapDest() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns BitSet paintBitmap.
getpaintBitmapDest() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns BitSet paintBitmap.
getPaintBrush() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Returns the selected paint brush's index.
getPaintBrushName(int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Returns the name of the paintbrush at the given index.
getPaintBuffer() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the paint buffer.
getPaintColor() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Accessor that returns the current color of the paint.
getPaintImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Returns the ModelImage to paint into.
getPaintImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Returns the ModelImage to paint into.
getPaintList() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
getPaintMask() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the paint mask.
getPaletteHasTransparencyDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getPanel() - Method in class gov.nih.mipav.view.components.PanelManager: Returns the managed panel.
getPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
getPanelSize() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
getPanelSize() - Method in interface gov.nih.mipav.view.PreviewImageContainer: The method returns the size of the panel into which the ViewJComponentPreviewImage will be drawing itself.
getPanelSize() - Method in class gov.nih.mipav.view.ViewImageDirectory: Called by the component image to get the real-time size of the panel before centering.
getPanelSize() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Method is required by PreviewImageContainer interface to draw a preview image.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEdit: abstract method returning the panel's value.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditAxisOrientation: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditBoolean: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditChar: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditDate: concatonates the date as MM/DD/YYYY; padding any years < 1000 with leading zeros.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditDefault: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditImageOrientation: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditModality: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditOrientation: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditRace: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditSetOrParam: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditSex: returns an empty String when the panel has been set to "No Value" otherwise, it returns the value.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditTime: returns as much of the time as was set.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelEditValueType: gets the data which the user could redefine within this panel.
getPanelValue() - Method in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
getPannedAxes() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
getPanoramaModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 2 numbers: 1.
getParallel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Read the current camera model.
getParallel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Change the camera model.
getParallel() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Change the camera model.
getParameter() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
getParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Gets the parameter with the given name.
getParameter(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the Object value of one of the parameters from the table.
GetParameterBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
GetParameterBlocks(Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
getParameterCount() - Method in class gov.nih.mipav.model.scripting.ParsedActionLine: Returns the number of parameters which will be passed to this action.
getParameterInfo() - Static method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Returns the parameters that are used in this class.
getParameterInfo() - Static method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Returns the parameters that are used in this class.
getParameterInfo() - Static method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Returns the parameters that are used in this class and implementing classes.
GetParameterization(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
getParameterKeys() - Method in class gov.nih.mipav.model.file.XMLPSet: Get an enumeration for the list of parameter names.
getParameterLabel() - Method in exception gov.nih.mipav.model.scripting.parameters.ParameterException: Return the parameter label which caused this parameter exception.
getParameters() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
getParameters() - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Get the current level-set evolution parameters.
getParameters() - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Get the current level-set evolution parameters.
getParameters() - Method in class gov.nih.mipav.model.algorithms.Lmmin
getParameters() - Method in class gov.nih.mipav.model.algorithms.LsqFit: getParameters accessor to function parameters.
getParameters() - Method in class gov.nih.mipav.model.algorithms.NESolve
getParameters() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: getParameters accessor to function parameters.
getParameters() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: getParameters accessor to function parameters.
getParameters() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Get an array containing all of the parameters in the parameter table.
getParameterString(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Construct a delimited string that contains the parameters to this algorithm.
getParameterTable() - Method in class gov.nih.mipav.model.scripting.ParsedActionLine: Returns the table of parameters which will be passed to this action when it is executed.
getParameterTable(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the parameter table associated with a Parameter set with the given description.
getParamPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getParams() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Retrieves the list of parameters to either be used to run the script or store settings for future executions of the algorithm in a script.
getParent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getParent() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory
getParent() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns a reference to another Parameter upon which this Parameter depends.
getParent() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
getParent() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from ViewJComponentEditImage.
getParentConditionValueString() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the parent Parameter condition value to test against when deciding whether to ask for a value for this Parameter when using the ActionDiscovery interface.
getParentDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
getParentDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
getParentFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns the parent frame of this image.
getParentFrame() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the parent frame.
getParentFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the parent frame.
getParentFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the parent frame.
getParentFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Returns a reference to the ViewJFrameImage object that is the parent of this frame.
getParentFrame() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Returns a reference to the ViewJFrameImage object that is the parent of this frame.
getParentFrame() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Get the parent frame of this MIP image frame.
getParentFrame() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Returns a reference to the ViewJFrameImage object that is the parent of this frame.
getParentTags() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
getPARRECMatrix() - Method in class gov.nih.mipav.model.file.FileInfoSPAR
getParsedFileName() - Method in exception gov.nih.mipav.model.scripting.ParserException: Return the file that the script was read in from ('-' if no file on disk).
getParseExceptionInfo(SAXParseException) - Method in class gov.nih.mipav.model.file.XMLErrorHandler: Returns a string describing parse exception details.
getParseExceptionInfo(SAXParseException) - Method in class gov.nih.mipav.view.dialogs.XMLErrorHandler: Returns a string describing parse exception details.
getParseExceptionInfo(SAXParseException) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.XMLErrorHandler: Returns a string describing parse exception details.
getPatches(libdt.PatchExtractor) - Method in class gov.nih.mipav.model.algorithms.libdt
getPatchingRequired(CLDevice[]) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getPath() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Gets the path for the surface.
getPath() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink: Gets the path for the VOI.
getPath() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
getPath(String, GetPath.Purpose) - Static method in class gov.nih.mipav.view.GetPath: * Determine the best path for the indicated file.
GetPath - Class in gov.nih.mipav.view: This is a static helper class for finding the path to a number of important files to the MIPAV application.
GetPath() - Constructor for class gov.nih.mipav.view.GetPath
GetPath(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Returns the path of a filename.
GetPath.Purpose - Enum in gov.nih.mipav.view
getPathDist() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the current position distance along the path.
getPathDist() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
getPathDist() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the current position distance along the path.
getPathDistance() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the current distance along the path.
getPathDistance() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the current distance along the path.
getPathDistance() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Get the current distance along the path.
getPathGraph(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Given previously determined starting point, compute the tree-structured skeleton path through the volume where no branch is shorter than the specified amount.
getPathIndex(LinkedList, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: getPathIndex returns what the new vertex index should be.
getPathIndex(LinkedList, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: getPathIndex returns what the new vertex index should be.
getPathLength() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the total length of the current path.
getPathLength() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the total length of the current path.
getPathLength() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
getPathPoint(int, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Access to the ith point on the Geodesic curve.
getPathPoint(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Access to the i-th point on the Geodesic curve.
getPathPoints(Point3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Access to the all the points on the Geodesic curve.
getPathPoints(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Access to the all the points on the Geodesic curve.
getPathPosition() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the location of the current position along the path.
GetPaths() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Extracts the starting positions of each path in the shape by a simple linear search.
getPathStep() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get the current distance increment for moving along the path.
getPathStep() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get the current distance increment for moving along the path.
getPathStep() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Get the current distance increment for moving along the path.
getPathString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getPatientAge() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPatientDOB() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientID() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current patient id.
getPatientID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPatientID() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientID() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current patient id.
getPatientID() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current patient id.
getPatientName() - Method in class gov.nih.mipav.model.file.FileGESigna4X
getPatientName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPatientName() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientName() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
getPatientName() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getPatientOrientation() - Method in class gov.nih.mipav.model.file.FileInfoDicom: This method extracts directional cosines from the DICOM image header (tag = "0020, 0037").
getPatientOrientation() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientOrientation(double[], double[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Extract orientation info from file header.
getPatientOrientationString() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Return String put in DICOM 0020,0037 field
getPatientPosition() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getPatientPosition(double[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Extracts the origin from image file info.
getPatientRotation() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientSex() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPatientSex() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPatientStatus() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPatientTextureCoordinates(Vector3f, ModelStorageBase, int, boolean) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems
getPatientWeight() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPauseBetweenFrameGroups() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPauseBetweenImages() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPauseInterval() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPauseTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getpcie() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns posterior commissure inferior edge for +acpc to +tlrc transformation in dicom ordering.
getPCVelocityEncoding() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPDU() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery.MoveRequestInfo: DOCUMENT ME!
getPeakSAR() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPercentage() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: The percentage of used memory to total memory the thread found.
getPercentageLabel() - Method in class gov.nih.mipav.view.ViewJProgressBar: Get the percentage label.
getPercentPhaseFieldOfView() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPercentSampling() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPerformedProcedureStepStartTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPerimeter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the perimeter of the VOI (in terms of res).
getPermutedSampleID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getPerspective() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
getPerVertexColor() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
getPerVertexColorArray() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Get the per-vertex color array.
getPETDataType() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPETStudyGeneral() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPETStudyImageData() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPFSwapped() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPhaseContrastFlowAxis() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPhaseData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Returns reference to phase data array.
getPhaseData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to phase data array.
getPhaseDim() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getPhaseMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
getPhi() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getPhiLattice() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
getPhone() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Gets phone number.
getPhotoEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getPhotometric() - Method in class gov.nih.mipav.model.file.FileInfoBase: Photometric interpretion.
getPhotometricInterpretation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPhotometricInterpretationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getPhotoStyleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getPhysName() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the physician's name from the physText field.
GetPickable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Get the object display either on/off.
getPickCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Get the pick canvas.
getPickCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Get the pick canvas.
getPickColor() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getPickColorA() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getPickColorB() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getPickColorG() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getPickColorR() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getPicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Returns the ID of the currently picked Widget.
getPicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Returns the currently selected point, either on the lattice or from the annotation list.
getPicked(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Finds the closest point to the input point and sets it as the currently selected lattice or annotation point.
getPickedAnnotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getPickedAnnotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getPickedLight(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Determine if a given shape is the sphere for one of the lights.
getPickResult(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Returns the pick result based on the input mouse event.
getPictureEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getPictureModeBWFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPictureModeContrastDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPictureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getPictureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: 1 or 2 values
getPictureModeEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPictureModeSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPictureModeSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPictureModeToneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPImage2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPitchAngleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: converted to degrees of upward camera tilt
getPitchAngleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getPixBuffer() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the buffer used to store ARGB images of the image presently being displayed.
getPixBufferB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the buffer used to store ARGB images of the image presently being displayed.
getPixel() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Pixel object for this Img with position {0,0}.
getPixel() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a new pixel object (instance of ContourPlot.PixelBase) for this Img with initial position (0,0) i.e. top left corner.
getPixel(int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Pixel object for this Img at specified position.
getPixel(int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a new Pixel object for this Img at specified position
getPixel(int, int, boolean, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
getPixel(int, int, boolean, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Reads the color value of the pixel at the specified location if areaSize == 1.
getPixelAspectRatioString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getPixelBandwidth() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPixelPadValue() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns pixel pad value.
getPixelRepresentation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPixels() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
getPixelSize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPixelSpacing() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getPlanarConfigurationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getPlane() - Method in class gov.nih.mipav.model.structures.VOIBase: Determines if the points on the contour lie on either the x,y,or z-planes.
getPlane() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Returns the plane this VOIManager is drawing into.
getPlane(Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
getPlaneCoordinates() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getPlaneGap() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns -1 if no plane gap is present, 0 = x gap, 1 = y gap, 2 = z gap.
getPlaneMax() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getPlaneMin() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getPlaneName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getPlaneType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPlateInfo() - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
getPlatform() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getPlatformDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getPlatformVersion() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getPlistStartupFile(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: This method returns the startup file which contains the MIPAV start-up options.
getPluginClassLoader() - Static method in class gov.nih.mipav.plugins.PluginUtil
getPluginInstallDirectory() - Static method in class gov.nih.mipav.view.Preferences: Returns the directory last used for installing plugins.
getPluginInterfaces(Class<?>) - Static method in class gov.nih.mipav.plugins.PluginUtil
getPlugInMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Return the menu containing the list of installed plugins.
getPluginUserDir() - Static method in class gov.nih.mipav.view.Preferences: Returns String indicating the directory where plugin class files are stored.
getPngChunkType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory
getPoint() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Returns the optimized point, with length == degrees of freedom.
getPoint() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Returns the optimized point, with length == degrees of freedom.
getPoint() - Method in class gov.nih.mipav.model.algorithms.Vectornd
getPoint(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Return the full transformation vector.
getPoint(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Return the full transformation vector.
getPoint(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Return the full transformation vector.
getPoint(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Knot: Get an individual coordinate value (x or y)
getPoint(int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Get the point at the specified index.
getPoint(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Obtain the transformation vector and adjust its translation by sample parameters.
getPoint(int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Obtain the transformation vector and adjust its translation by sample parameters.
getPoint(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.PointStack: Get a point and stores it in the two input arrays.
GetPoint(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the i'th point.
GetPoint(int, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the i'th point.
getPointCoordinates(float[]) - Method in class gov.nih.mipav.model.structures.VOI: This method is used to get the coordinates of a single VOIPoint.
getPointCopy() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getPointDetails() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Points
getPointerButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Returns the pointer button, used by VOIManager to determine if the pointer button is active.
getPointerButton() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
getPointNormal(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the normal vector for the annotated point.
getPointNormal(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the normal vector for the annotated point.
getPointPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the 3D coordinates for the annotated point.
getPointPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the 3D coordinates for the annotated point.
getPoints() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Return an array of transformation vector.
getPoints() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Return an array of transformation vector.
getPoints() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Return an array of transformation vector.
getPoints() - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice: Returns the list of VOIPoint in this polyline.
getPoints() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: attribute member access.
getPointsAndLinesDisplay() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that gets the visible flag.
GetPointUS(int, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: un-safe (and dirty) since it depends on assumptions regarding the
getPointVOI() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: All VOIPoints are stored in one VOI contained in this class.
getPointx() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getPointX(int) - Method in class gov.nih.mipav.model.structures.PointStack: Gets the x coordinate of a point.
getPointy() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getPointY(int) - Method in class gov.nih.mipav.model.structures.PointStack: Gets the y coordinate of a point.
getPolarity() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns.
getPolygonMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Returns the polgyon mode.
GetPolygonMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Return the Wireframe fill mode (FILL, LINE, POINT).
getPolylines(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
getPolylines(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getPopupMenu() - Method in class gov.nih.mipav.view.JScrollMenu
getPort(String) - Static method in class gov.nih.mipav.view.Preferences: Accessor to get DICOM image server's port for selected AETitle.
getPos() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
getPosition() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightItem: DOCUMENT ME!
getPosition() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPosition() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
getPosition() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getPosition() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
getPosition() - Method in class gov.nih.mipav.model.structures.VOIPoint
getPosition() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query the current position of the light.
getPosition() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Get the light source position.
getPosition() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query current position of vertex.
getPosition(float, float, float, Vector3f) - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Return the B-Spline evaluation for the given input values.
getPosition(float, float, Vector2f) - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Return the B-Spline evaluation for the given input values.
getPosition(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df: Return the B-Spline evaluation for the given input values.
getPosition(int, int, Vector2f) - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df: Return the B-Spline evaluation for the given input values.
getPositionAndIntensity(int, int, Vector3f[], float[], float[], int) - Method in class gov.nih.mipav.model.structures.VOI: Gets the position and intensity for this VOI if it's a line.
getPositionAndIntensity(Vector3f[], float[], float[], int) - Method in class gov.nih.mipav.model.structures.VOIContour: Gets position/intensity along the boundary of this contour VOI.
getPositionAndIntensity(Vector3f[], float[], float[], int) - Method in class gov.nih.mipav.model.structures.VOILine: Gets the position/intensity along a line VOI.
getPositionAndIntensityIndex(int[], float[], float[], int) - Method in class gov.nih.mipav.model.structures.VOIContour: Gets the position/intensity along the boundary of this contour VOI.
getPositionScaled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Scaled coordinates for the current position along the path for viewing.
getPositionScaled(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Scaled coordinates for the current position along the path for viewing.
getPositionScaled(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Scaled coordinates for the current position along the path for viewing.
getPositionUnScaled(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Scaled coordinates for the current position along the path for viewing.
getPositionX() - Method in class gov.nih.mipav.model.structures.VOIContour.positionItem: DOCUMENT ME!
getPositionY() - Method in class gov.nih.mipav.model.structures.VOIContour.positionItem: DOCUMENT ME!
getPosteriorMargin() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns AC posterior margin marker point for +orig to +acpc transformation in dataset ordering.
getPosteriorPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most posterior point marker for +acpc to +tlrc transformation in dicom ordering.
getPostfix(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getPostfix(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
GetPostfix() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the postfix for this VolumeImage.
getPowerUpTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getppfiltname(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
getPrecision() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: DOCUMENT ME!
getPrediction(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
getPrediction(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
getPrediction(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
getPrediction(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
getPredictions() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getPredictionTerminalNodeID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
getPredictionTerminalNodeID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
getPredictionTerminalNodeID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
getPredictionTerminalNodeID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
getPreferencesDir() - Static method in class gov.nih.mipav.view.Preferences: Return the directory where mipav-generated, user-specific files should be placed.
getPreferredSize() - Method in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: Gets the preferred size based on the parent (container's) size.
getPreferredSize() - Method in class gov.nih.mipav.view.BarMeter: Preferred size of this panel.
getPreferredSize() - Method in class gov.nih.mipav.view.LineMeter: returns the panels preferred size.
getPreferredSize() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Gets preferred size to set object size to.
getPreferredSize() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Size set to object size.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Size set to object size.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentBase: size set to object size.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Size set to object size.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Size set to object size.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Accessor that returns the preferred size of the component.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentGraphAxes: Accessor that returns the preferred size of the component.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Gets preferred size to set object size to.
getPreferredSize() - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Size set to object size.
getPrefix(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getPrefix(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
getPrefix(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getPreparationDirection() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getPrescanReceiveAttenuation1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPrescanReceiveAttenuation2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPrescribedImageNumbers() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPrescribedSeriesNumbers() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPresentationContextes() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Returns the list of presentation contexts.
getPresentationContextFromID(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Gets a presentation context ID for a given abstrax syntax.
getPresentationContextID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Gets a presentation context ID for a given abstrax syntax.
getPresentationContextID(String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Gets a presentation context ID for a given abstrax syntax.
getPresentationContexts() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Accessor to return the presentation context.
getPressedStart() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
getPressureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getPrevDeltaWeight() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
getPreviewExtents() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
getPreviewImageType() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
getPreviewImageValidDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getPreviewImageValidDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getPrimaryInfo(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoBase: Method called by many extending classes to return basic information in the dialog common to all images.
getPrime(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
getPrincipalAxis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the principle axis of VOI (only valid for 2D object); return pricipal axis angle of the VOI.
getPrintScaleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getPrivateDicomTagTable(boolean) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Returns a reference to the DICOM Hashtable.
getProbe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Get the root transform group of the CoolTip probe.
getProbe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Get the root of the default probe.
getProbe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Get the root transform group of the regular probe.
getProbe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Get the thermal probe root tranform group.
getProbeBase() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the probe base reference inside the burning control panel.
getProbeDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return probePanel from parent frame.
getProbeDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return probePanel from parent frame.
getProbeDialog() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Return the rfa probe panel.
getProbesRootBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Return the root to the probes branches.
getProbesRootBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Return the root to the probes branches.
getProbeTransform() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Return the probe position transformation.
getProbeType() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Return the current active probe type.
getProblem() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
getProbRootParentTG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the probe's transform group.
getProbX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
getProbXOld() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
getProcess() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns whether voi is included in processing.
getProcess() - Method in class gov.nih.mipav.model.structures.VOIBase: Accessor that returns the process.
getProcessLog() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: provides the string key of translations between source filename and destination filename.
getProcessStatus() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getProcessType() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Reports if algorithm is performing calcs per slice, per contour, or for entire VOI.
getProcessType() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Gets the output calculation type.
getProfileClassDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getProfiles() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Searches for all profiles in the MIPAV preferences that start with profileAnonymizeDICOM.
getProfiles() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Searches for all profiles in the MIPAV preferences that start with profileAnonymizeDICOM.
getProfileVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getProgramAuthor() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getProgramDate() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getProgramInputs() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getProgramName() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getProgramOutputs() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getProgramShiftDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getProgramVersion() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getProgress() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
getProgressBar() - Method in class gov.nih.mipav.view.JPanelProgressBar: Get the progress bar.
getProgressBar() - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
getProgressBar() - Method in class gov.nih.mipav.view.ViewJProgressBar: Get the progress bar.
getProgressBarPrefix() - Method in class gov.nih.mipav.view.ViewUserInterface: Gets the string "Opening " or "Loading " based on what the progress bar should be displaying.
getProgressChangeListener() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: If there is a progress bar that is listening to the algorithm's progress change events, this will retrieve that progress bar.
getProgressChangeListeners() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns the progress change event listener list.
getProgressChangeListeners() - Method in class gov.nih.mipav.model.file.FileBase
getProgressFromFloat(int, int, float) - Static method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
getProgressFromInt(int, int, int) - Static method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
getProgressModulus() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
getProgressStep() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
getProgressValues() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Gets the current stored min and max progress values.
getProjectionAngle() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getProjectionDirection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getProjectionNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getProjectionTime() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getPropagationWeight() - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters: Get the propagation weight 'b'.
getProperties() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getPropertiesDialog() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
getProperty(Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties
getProperty(String) - Static method in class gov.nih.mipav.view.Preferences: Accessor to return a specfic properties given a key.
getProperty(Properties, String) - Method in class gov.nih.mipav.model.structures.TransMatrix
getPropertyName() - Method in class gov.nih.mipav.view.JPanelEdit: Returns the current name used to identify PropertyChangeEvents.
getPropNames() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getProprietaryThumbnailDataDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDescriptor
getProtocol() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get scan Protocol for equipment associated with image.
getProtocolName() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getProtractorCommonVertex() - Method in class gov.nih.mipav.view.ViewJComponentTriImage
getProvenanceHolder() - Method in class gov.nih.mipav.model.structures.ModelImage
getProvenanceHolder() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor for the mipav's data provenance .
getProvinceOrStateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getPSDDay() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDFileName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDHour() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDMinute() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDMonth() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDSeconds() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSDYear() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSeries2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPSet(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets a parameter set from the hashtable using a description.
getPSetDescription() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
getPSetHashtable() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the hashtable that holds all sets of parameters.
getPSetKeys() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets an enumeration for the list of parameter set keys.
getPSetsHashMap() - Method in class gov.nih.mipav.model.file.FileWriteOptions: gets the psets hashmap
getPSFImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Returns the point spread function image.
getPt() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
getPt() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry
getPtID() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the Patient's ID from the ptIDText field.
getPtName() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the Patient name from the ptNameText field.
getPts(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
getPublisher() - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey
getPulseSequence() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPulseSequenceMode() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getPulseSequenceSubtype() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getQMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Accessor that returns the quad mesh, which represents the plotted surface.
getQTs() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getQTs() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getQuadrantBoundaryPoints(int, int) - Static method in class gov.nih.mipav.util.CircleUtil: Generates 2D data points in a given quadrant for a specified radius
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getQualityLevelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getQualityModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getQualityModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getQuantificationUnits() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getQuantity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The current number of valid elements in the array.
getQuantity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The current number of valid elements in the array.
getQuantity() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the number of image elements.
getQuantity() - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: Get the current number of active heap records.
getQuantity() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Get the number of image elements.
getQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The current number of valid elements in the array.
getQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The current number of valid elements in the array.
getQuantizationTableNumber() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent
getQuickShotDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getR1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getR1ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
getR2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getR2ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
getRace() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the subject's race.
getRadiologicalView() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Gets the radiological view flag:
getRadiopharmaceutical() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getRadius() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the burning sphere radius as a point format ( semiX, Y, Z ).
getRadius() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the radius( semiX, semiY, semiZ).
getRadius(float, float) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Get the radius for the polar coordinate from the given Cartesian coordinate
getRadixArray(int, int[], int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
getRaFile() - Method in class gov.nih.mipav.model.file.FileBase
getRAImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Relative Anisotropy Image.
getRandomNumber(Double, Double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
getRandomOrder() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Accessor returns randomOrder.
getRangeFlag() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
getRangeString(int) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
getRangeString(int) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
getRASScannerPositionLabels(ModelImage, Vector3f) - Static method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets position data to display in message bar - for DICOM and MINC images, gives patient position as well.
getRaster(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
getRate() - Method in class gov.nih.mipav.model.file.FileAvi
getRational(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a Rational.
getRationalArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as an array of Rational.
getRationalOrDoubleString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getRawDataByteOrderDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getRawDataCFAPatternDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getRawDataStudyNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRawDataSystemID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRawDevArtFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawDevEditStatusDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawDevEngineDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevEngineDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawDevExposureBiasValueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevNoiseReductionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawDevPictureModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevPmBwFilterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevPmPictureToneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevSettingsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawDevVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
getRawDevVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
getRawFileInfo(ParameterTable) - Static method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Reads in the necessary file info from a set of parameters to read a RAW file.
getRawImageInfo() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
getRawImageInfo() - Method in class gov.nih.mipav.view.ViewOpenFileUI
getRawImageInfo() - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: DOCUMENT ME!
getRayDelta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Get the spacing along the vertex normal rays, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.
getRayDelta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Get the spacing along the vertex normal rays, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.
getRayTracerA() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns the reference to rayTracerA.
getRBF() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getRCenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getREADCode() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
getREADCode() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
getReader() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: Returns the MipavSAXReader.
getReaderString(MetadataExtractor.RandomAccessReader, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler: Read a given number of bytes from the stream This method is employed to "suppress" attempts to read beyond end of the file as may happen at the beginning of processMakernote when we read increasingly longer camera makes.
getReal() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools.EigenvalueComplex
getReal() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryItem: DOCUMENT ME!
getRealData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Returns reference to real data array.
getRealData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Returns reference to real data array.
getRealData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Returns reference to real data array.
getRealData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Returns reference to real data array.
getRealData() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Returns reference to real data array.
getRealDistance(int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Given the coordinates of two points in sample space of the volume, compute the real distance betwen them by taking into consideration the spacing between samples in the volume along each axis.
getRealDistanceNeighbors27(float[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Fill an array of distances to the 26-connected neighbors for any given sample where the distances are the real Euclidean distances scaled by the size of the sample along each axis.
getRealEigenvalues() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
getRealPoint(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Compute the "real" coordinates of the sample in the volume at the specified sample coordinate indexes.
getReceiveAttenuatorSetting() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getReciprocal() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the reciprocal value of this object as a new Rational.
getRecognizedFaces() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory
getRecognizedFacesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getRecoInpSize() - Method in class gov.nih.mipav.model.file.FileInfoBRUKER
getRecommendedReceiveAttenuation() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRecommendedReceiveFrequency() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRecommendedTransmitAttenuation() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRecommendedTransmitFrequency() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getReconstructedImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Returns the reconstructed image:
getReconstructionMethod() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getRecord(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: Get a record from the heap records.
getRecorderStatus() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Returns the current status of the script recorder.
getRecorderStatus() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Returns the current status of the script recorder.
getRecordingModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getRecordModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getRecordModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getRecordModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getRecordRate() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getRecords() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: The collapse records that have been created by the constructor for ModelSurfaceDecimator.
getRecordShutterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getRecordVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getRecoSize() - Method in class gov.nih.mipav.model.file.FileInfoBRUKER: Gets the size of the reconstruction.
getred() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Accessor that returns int red.
getred() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Accessor that returns int red.
getred() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Accessor that returns int red.
getred() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Accessor that returns int red.
getRed() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getRed() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns int red.
getRedBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getRedFunction() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor that returns the red transfer function.
getRedFunction() - Method in class gov.nih.mipav.model.structures.ModelRGB: Accessor that returns the red transfer function.
getReductionX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getReductionX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getReductionY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getReductionY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getReductionZ() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getReductionZ() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.
getRedX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getRedY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getReference() - Static method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Returns a reference to the provenance recorder.
getReference() - Static method in class gov.nih.mipav.model.scripting.ScriptRecorder: Returns a reference to the script recorder.
getReference() - Static method in class gov.nih.mipav.model.scripting.ScriptRunner: Returns a reference to the script recorder.
getReference() - Static method in class gov.nih.mipav.model.scripting.VariableTable: Returns a reference to the variable table singleton.
getReference() - Static method in class gov.nih.mipav.plugins.ManifestFile: Gets the default manifest, guaranteed to be latest default version unless working in threaded environment.
getReference() - Static method in class gov.nih.mipav.view.ViewJPopupPlugin
getReference() - Static method in class gov.nih.mipav.view.ViewUserInterface: Get a reference to the ViewUserInterface object.
getReferenceBlackWhiteDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getReferenceDateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getReferenceFrameNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getReferenceTagTable() - Method in class gov.nih.mipav.model.file.FileDicomTagTable
getReferringPhysician() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRefMark() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the reference mark flag.
getRegisteredFramedImages(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the Vector of Registered Framed Images that are of the same number of dimensions as the active image and same extents for dimesions 3, 4, and 5.
getRegisteredFramedImages4D3D(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage: If active image is 4D, this returns all 3d images that have same x,y,and z dimensionality as the 4d image
getRegisteredFramedImagesNum() - Method in class gov.nih.mipav.view.ViewUserInterface: Return an num of images with frames(elements) from the image hashtable.
getRegisteredFramedImagesSize() - Method in class gov.nih.mipav.view.ViewJFrameImage: Returns the size of the RegisteredFramedImages Vector.
getRegisteredImageByName(String) - Method in class gov.nih.mipav.view.ViewUserInterface: Return a registered image from the image hashtable based on the name of the image.
getRegisteredImageNames() - Method in class gov.nih.mipav.view.ViewUserInterface: Return an enumeration of keys (image names) from the image hashtable.
getRegisteredImages() - Method in class gov.nih.mipav.view.ViewUserInterface: Return an enumeration of images (elements) from the image hashtable.
getRegisteredImagesNum() - Method in class gov.nih.mipav.view.ViewUserInterface: Return an num of images (elements) from the image hashtable.
getRegisteredNames() - Method in class gov.nih.mipav.view.ImageRegistryMonitor: The name of images currently registered.
getRegisteredResults() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm
getRegisterTo() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRegistrationFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Method that returns the registration frame if it exists else returns null.
getRegular() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the value of regular character.
getRegular() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the value of regular character.
getRegular() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the value of regular character.
getReleaseDate() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory: Parses the Release Date tag and the Release Time tag to obtain a single Date object representing the date and time when this image was released.
getReleaseDateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getReleasedSliderValue() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getReleaseModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getReleaseTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getRelerr() - Method in class gov.nih.mipav.model.algorithms.ODE
getRelerr() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getRemappedValue(float, int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Method to remapped a value using the transfer function.
getRemoteBufferedImage() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a BufferedImage that shares the data of this Img.
getRemoteBufferedImage() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a BufferedImage that shares the data of this image.
getRemove() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem: DOCUMENT ME!
getRemoveLength() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
getRenderedImage(Image) - Method in class gov.nih.mipav.model.file.FileIO
getRenderer() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
getRenderer() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas
getRendererGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Get the render mode interface panel.
getRendererProgressBar() - Static method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).
getRendererProgressBar() - Static method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).
getRendering() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getRenderingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getRenderingHint() - Method in enum gov.nih.mipav.view.Preferences.InterpolateDisplay
getRenderingIntent() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getRenderingIntentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
getRenderingIntentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getRenderMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Get the rendering mode.
getRenderMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Change the camera model.
getRenderMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getRepetitionTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getRepetitionTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getRequestedNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getResavedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getRescaleIntercept() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the intercept.
getRescaleSlope() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the slope.
getResearchMode() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
getReserved() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
GetResidualBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
GetResidualBlocks(Vector<CeresSolver.ResidualBlock>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
getResiduals() - Method in class gov.nih.mipav.model.algorithms.LsqFit: DOCUMENT ME!
getResiduals() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
getResiduals() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
getResolution(int) - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the resolution of the requested dimension.
getResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getResolutionInfoDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getResolutions() - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Accessor to return the resolutions per slice as parsed from the XML header.
getResolutions() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns each dimension's resolution.
getResolutions() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getResolutions() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getResolutions() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the resolutions.
getResolutions() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Returns the ModelImage resolutions.
getResolutions() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Returns the ModelImage resolutions.
getResolutions() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: DOCUMENT ME!
getResolutions(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the resolutions for the image without regarding resolution difference between slices.
getResolutions(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the resolutions for the image translated into the Patient-Coordinate systsm:
getResolutions(int, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the resolutions for the image translated into the Patient-Coordinate systsm:
getResolutionSwitches() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
getResolutionX() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getResolutionX() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the image resolution factor in the screen x-direction.
getResolutionX() - Method in class gov.nih.mipav.view.ViewJComponentBase: Resolution correction factor in the x - dimension.
getResolutionY() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getResolutionY() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the image resolution factor in the screen y-direction.
getResolutionY() - Method in class gov.nih.mipav.view.ViewJComponentBase: Resolution correction factor in the y - dimension.
getResource(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
getResourceAsStream(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
getResources(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
GetRestrictedFixedDepthLaplacian(SparseSymmetricMatrix, int, int[], int, OctNode, float, SortedTreeNodes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getResult() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Returns the distortion-corrected DWI 4D image series.
getResultBuffer() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
getResultBuffer() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
getResultImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Get the final result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle
getResultImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Get the midsagittal aligned image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getResultImage
getResultImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
getResultImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: get Result Image
getResultImage() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Return the attenuated image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.SIFT3D
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Returns result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Returns corrected image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: This method returns the projection images in a Vector.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Retrieves the result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Gets the result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Accessor to get interpolated image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Return the result image (or null if not created yet).
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Returns result image.
getResultImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Returns result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Accessor that returns the image after adding image margins.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Accessor that returns the image after filling holes.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Gets the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Accessor that returns the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: get result image
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Accessor to get the result image.
getResultImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Accessor that returns the image.
getResultImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: get Result Image
getResultImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
getResultImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Accessor that returns the image.
getResultImageA() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Accessor that returns the image.
getResultImageA() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Accessor that returns the image.
getResultImageB() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Accessor that returns the blue image.
getResultImageB() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Accessor that returns the blue image.
getResultImageB() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Accessor that returns the image.
getResultImageB() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Accessor that returns the Blue result image.
getResultImageB() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Accessor that returns the Brightness result image.
getResultImageG() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Accessor that returns the green image.
getResultImageG() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Accessor that returns the green image.
getResultImageG() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Accessor that returns the Green result image.
getResultImageH() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Accessor that returns the Hue result image.
getResultImageR() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Accessor that returns the red image.
getResultImageR() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Accessor that returns the red image.
getResultImageR() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Accessor that returns the Red result image.
getResultImages() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: for output of results
getResultImageS() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Accessor that returns the Saturation result image.
getResultMatrix() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Gets the result matrix (only used by OAR3D).
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Returns the resultant VOI.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Accessor that returns a voi that is a smoothed version of the original.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Accessor that returns the resultant VOI.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch: Accessor that returns the resultant VOI.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Accessor that returns a voi that is a smoothed version of the original.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Accessor that returns the resultant VOI.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Accessor that returns a voi that is a smoothed version of the original.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Returns the resultant VOI.
getResultVOI() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Returns the resultant VOI.
getResUnits() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getResX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getResY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getReversedOrderMesh() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Reverse the order of each triangle in the mesh.
GetRGB() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Volume RGBT.
getRGB_OpacityA() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function via the ModelRGB object for image B.
getRGB_OpacityA_GM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for the gradient magnitude image via the ModelRGB object for image A.
getRGB_OpacityB() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function via the ModelRGB object for image B.
getRGB_OpacityB_GM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Returns the opacity transfer function for the gradient magnitude image via the ModelRGB object for image B.
getRGBAverageIntensities() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
getRGBDialog() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Deprecated.
getRGBPaintComponents() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getRGBT() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Return the current ModelRGBT:.
getRGBTa() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getRGBTa() - Method in class gov.nih.mipav.view.PatientSlice: Accessor that returns the RGBT for image A.
getRGBTA() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Gets the RGB LUT table for ARGB image A.
getRGBTA() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Get the RGB table of imageA.
getRGBTA() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the RGB table for image A.
getRGBTA() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns the ModelRGB RGBTA for imageA.
getRGBTA() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Gets the RGB LUT table for ARGB image A.
getRGBTA() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the ModelRGB RGBTA for imageA.
getRGBTA() - Method in class gov.nih.mipav.view.ViewJFrameBase: Get the RGB table for image A.
getRGBTA() - Method in class gov.nih.mipav.view.ViewJFrameImage: Gets the RGB LUT table for ARGB image A.
getRGBTA() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Gets the RGB LUT table for ARGB image A.
getRGBTb() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
getRGBTb() - Method in class gov.nih.mipav.view.PatientSlice: Accessor that returns the RGBT for image B.
getRGBTB() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Get the RGB table of imageB.
getRGBTB() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Accessor that returns the RGB table for image B.
getRGBTB() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Accessor that returns the ModelRGB for imageB.
getRGBTB() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the ModelRGB for imageB.
getRGBTB() - Method in class gov.nih.mipav.view.ViewJFrameBase: Get the RGB table for image B.
getRGBTB() - Method in class gov.nih.mipav.view.ViewJFrameImage: Gets the RGB LUT table for ARGB image B.
getRGBTB() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Deprecated.
DOCUMENT ME!
getRight() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
getRightCurve() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getRightList() - Method in class gov.nih.mipav.view.JPanelListController: Convience method to get list B.
getRightPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most right point marker for +acpc to +tlrc transformation in dicom ordering.
getRightTable() - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
getRightTree() - Method in class gov.nih.mipav.view.JPanelTreeController: Convience method to get Tree B.
getRightVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getRLCenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRLETAMARencapsulatedOffset() - Method in class gov.nih.mipav.model.file.FileInfoDicom
getRNormal() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRollAngleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor: converted to degrees of clockwise camera rotation
getRollAngleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getROn() - Method in class gov.nih.mipav.model.structures.ModelRGB: Returns the boolean indicating if the red channel should be displayed.
getRoot() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getRoot() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Accessor that returns the root node for the light bulbs.
GetRoot(RootInfo, float, int, Point3D, HashMap<Long, Pair<Float, Point3D>>, Point3D, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetRoot(RootInfo, float, Point3D, HashMap<Long, Pair<Float, Point3D>>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getRootBisection() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: Called by computeRadius, finds the root of the <= 8 degree polynomial through bisection method:
getRootDir() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel
GetRootIndex(OctNode, int, int, int, RootInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetRootIndex(OctNode, int, int, RootInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetRootIndex(Long, HashMap<Long, Integer>, HashMap<Long, Integer>, CoredPointIndex) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
GetRootPair(RootInfo, int, RootInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
getRootsOnInterval(float, float, float[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: afRoot should have length 2; returns number roots found, which are returned in the afRoot array.
getRot() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: accessor for rot.
getRot() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: accessor for rot.
getRot() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: accessor for rot.
getRot() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: accessor for rot.
getRotAngle(Transform3D) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
getRotateBegin() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateBeginX() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateBeginY() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateBeginZ() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateEnd() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateEndX() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateEndY() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotateEndZ() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
getRotation() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
getRotation() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
GetRotation(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the rotation between ref and this (in radians).
getRotationBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the rotation range for brute force registration:
getRotationCutoffValue() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getRotationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getRotationExtent() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getRotationScaleFactor() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
GetRotationTest(CAAMShape, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Tests CAAMShape:GetRotation() for rotations in the range [0;360].
getRound() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getRow() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
getRow() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowItem
getRow() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
getRow(int) - Method in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
getRow(int) - Method in class gov.nih.mipav.view.ViewTableModel
getRow(JTable, VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
GetRow(int, int, double[][][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
getRowBegin() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
getRowCount() - Method in class gov.nih.mipav.model.structures.TableSorter: TableModel interface methods.
getRowDependent() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the row dependent flag.
getRowFromID(int) - Static method in class gov.nih.mipav.view.DICOMDisplayer: Returns the row number that has a matching ID.
getRowLength(int) - Method in class gov.nih.mipav.view.ViewTableModel: Gets the length of a row in the model
getRows() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getRowsPerStripDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getrr() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns the location of the Talairach center in the dicom order +orig anatomical image in voxel indices.
getrrArray() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of the location of the Talairach center in the dicom order +orig anatomical image in voxel indices.
getRRCycles() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getRRHistogram() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getRSquared() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
getRX() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: X Rotation
getRY() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Y Rotation
getRZ() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Z Rotation
getS() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Return the diagonal matrix of singular values
getS15Fixed16() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Gets a s15.16 fixed point float from the buffer.
getS15Fixed16(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Gets a s15.16 fixed point float from the buffer.
getSafmin() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
getSagittalComponentSlice() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the x position of the slice.
getSaliency() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
getSampleFormatDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSamplePoint(float, float, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Convert the input "real" coordinates into sample coordinates.
getSamplePosition() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Return the interpolated sample coordinates in the volume of the current position along the path for viewing.
getSampleSize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the sample factor.
getSampleSize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Accessor that returns the sample size that created the quad mesh.
getSamplesPerPixel() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSamplesPerPixelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSamplingPlanes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getSamsungModelIdDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getSanyoQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getSAR() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSARMonitored() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATSelections() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSaturationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getSATXLoc1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATXLoc2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATXThick() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATYLoc1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATYLoc2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATYThick() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATZLoc1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATZLoc2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSATZThick() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSaveableImageFileFormats() - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver
getSaveAsEncapJP2() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
getSavedWidgetState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the widget state read from file, so it can initialize a new shader effect.
getSaveImageOptions(ParameterTable, ModelImage, boolean) - Static method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Create a new set of image saving options from a save action's parameters.
getSaveListData() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Generates and returns the list data for the Source list from the dicom dictionary specified by the save panel as a Vector of DicomTagIdentifier.
getSaveTable() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Returns a hashtable of the keys and associated DICOM tags that are in the right-list.
getSaveTagFilePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Returns the SelectFileB panel.
getSBuffer() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: DOCUMENT ME!
getScalarNames() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getScale() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getScale() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF
getScale() - Method in class gov.nih.mipav.model.file.FileAvi
getScale() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getScaledX(int) - Method in class gov.nih.mipav.view.ViewJComponentBase: Converts the screen cursor x-coordinate to scaled version using the image's pixel resolution and zoom.
getScaledY(int) - Method in class gov.nih.mipav.view.ViewJComponentBase: Converts the screen cursor y-coordinate to scaled version using the image's pixel resolution and zoom.
GetScaleMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: The ModelImage Volume max-scale factor.
getScaleSlope() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getScaleStepsBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the y scale range for brute force registration:
getScaleType() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Get the type of image scaling.
GetScaleX() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: The ModelImage Volume x-scale factor.
GetScaleY() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: The ModelImage Volume y-scale factor.
GetScaleZ() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: The ModelImage Volume z-scale factor.
getScalingFactor1() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getScalingFactor2() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getScanAcquisitionNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScanARRs() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScanDate() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get the date the image was taken.
getScanID() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the scan ID.
getScanMatrixX() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScanMatrixY() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScannerCoordLPS(int, int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
see MipavCoordinateSystems.fileToScanner
getScannerCoordRAS(int, int, int, float[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
see MipavCoordinateSystems.fileToScanner
getScannerPositionLabels(ModelImage, Vector3f) - Static method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets position data to display in message bar - for DICOM and MINC images, gives patient position as well.
getScannerPositionLabels(Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets position data to display in message bar - for DICOM and MINC images, gives patient position as well.
getScannerQuantificationFactor() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getScanningSequence() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getScanningSequence() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getScanNum() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current scannum string.
getScanNum() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current scannum string.
getScanNum() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current scannum string.
getScanOptions() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getScanPercentage() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getScanProtocolName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScanTime() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get the time the image was taken.
getScatterCorrected() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getScatterCorrectionMethod() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
GetScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Get the object's parent node in the scene graph.
GetScene() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
getSceneCaptureTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSceneModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getSceneModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getSceneModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getSceneRootTG() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the transform group of the scene, which is the parent of everything displayed.
GetSceneRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getSceneSelectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Gets the scene state in terms of slices visible, which slice number, etc.
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Gets the scene state in terms of slices visible, which slice number, etc.
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Gets the current scene state, in terms of what number the slice is on and if it is visible.
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Gets the current scene state, in terms of what numbers the slices are on and whether or not they are visible.
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Gets the current scene state, in terms of what numbers the slices are on and whether or not they are visible.
getSceneState() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Gets the current scene state, in terms of what numbers the slices are on and whether or not they are visible.
getSceneToWorldMatrix() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Get the world matrix.
getSceneTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSCenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getScIma() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSclInter() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Gets the data additive factor.
getSclSlope() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: Gets the data scaling multiplicative factor.
getScore() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map.curvePair
getScore() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair
getScore(ModelImage, ModelImage, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
getScore(ModelImage, ModelImage, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
getScoreMaxAbove(int, int, int, int, boolean[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
getScoreMaxBelow(int, int, int, int, boolean[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
GetScratchTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
getScreenCoordinates(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Accepts a point in volume space and converts it to screen space.
getScreenRatioToComp(Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu
getScript() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Returns the current script.
getScriptableAction(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Returns a new instance of the class associated with a given script action.
getScriptActionLocations() - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Gets the script action location vector, needed for figuring out the possible short name of a non-MIPAV scriptable tool.
getScriptFile() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getScriptFile() - Static method in class gov.nih.mipav.view.Preferences: DOCUMENT ME!
getScriptImage(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getScriptImageActions() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getScriptImageLabels() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getScriptImageVars() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
getScriptNodeChildCount() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Returns the number of child nodes the script node has
getScriptsDirectory() - Static method in class gov.nih.mipav.view.Preferences: Returns the default script directory. if null, returns the user's current working directory + "scripts"
getScriptVOI(String) - Method in class gov.nih.mipav.view.dialogs.ScriptImage
getScriptVOIs() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
getScrollBar() - Method in class gov.nih.mipav.view.JScrollPopupMenu
getScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
getScrollPaneHeight() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get the height of the scroll pane holding the component image.
getScrollPaneSize() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get the size of the scroll pane holding the component image.
getScrollPaneSize(Dimension) - Method in class gov.nih.mipav.view.ViewJFrameImage: Return the preferred size for the component image scroll pane.
getScrollPaneWidth() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get the width of the scroll pane holding the component image.
getScSer() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
getSculpt(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Get the sculpt on/off at the position.
getSculptEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Returns true when sculpting is enabled.
getSculptImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Return sculpt image for display.
getSculptorPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the sculptor panel.
getSculptShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM
getSData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
getSData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
getSecond() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair
getSecond() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Pair
getSecond() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet
getSecond() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair
getSecond() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair
getSecondaryPluginsDir() - Static method in class gov.nih.mipav.view.ViewUserInterface
getSecondImage() - Method in class gov.nih.mipav.model.file.FileIO: Returns address of TIFF header of second image if present in CZ-Private Tag of LSM 510 file Returns zero if not present.
getSecondImage() - Method in class gov.nih.mipav.model.file.FileLSM: Accessor that returns the address of the TIF header of the second image if present Returns zero if not present.
getSeconds() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
GetSeed(long[], long[], long[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
getSeedIntensity() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Get the current seed intensity.
getSeedPoints() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Return the points that have been marked on the MIP as possible seed points.
getSegImage() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Accessor that returns the image.
getSegment(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Gets the first JPEG segment data for the specified type.
getSegment(byte, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Gets segment data for a specific occurrence and type.
getSegment(float[], float[], int) - Method in class gov.nih.mipav.model.file.FileSVS
getSegment(float[], float[], int) - Method in class gov.nih.mipav.model.file.FileTiff
getSegment(float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getSegment(MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Gets the first JPEG segment data for the specified type.
getSegment(MetadataExtractor.JpegSegmentType, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Gets segment data for a specific occurrence and type.
getSegmentationImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the segmentation region map image which contains info on where the vascualture, etc are located.
getSegmentationImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the segmentation region map image which contains info on where the vascualture, etc are located.
getSegmentationImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Return the segmentation region map image which contains info on where the vascualture, etc are located.
getSegmentCount(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Returns the count of segment data byte arrays stored for a given segment type.
getSegmentCount(MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Returns the count of segment data byte arrays stored for a given segment type.
getSegmentList(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData
getSegments() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
getSegments(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Returns all instances of a given JPEG segment.
getSegments(MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Returns all instances of a given JPEG segment.
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DuckyReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDhtReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDnlReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegReader
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Gets the set of JPEG segment type identifiers.
getSegmentTypes() - Method in interface gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentMetadataReader: Gets the set of JPEG segment types that this reader is interested in.
getSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
getSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
getSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
getSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getSelected(int, int, JTable, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getSelected(String, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
getSelectedBorderColor() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Returns the color of the selected image border.
getSelectedBranchIndex() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Access the index of the currently selected branch at a branch point.
getSelectedBranchIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Access the index of the currently selected branch at a branch point.
getSelectedComponent() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the selected tabbbed pane component.
getSelectedComponent() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the selected tabbbed pane component.
getSelectedComponent(int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return the active image component.
getSelectedComponent(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return the active image component.
getSelectedFile() - Method in class gov.nih.mipav.view.JPanelFileSelection: we are enforcing existance at the calling/owning object level this panel doens't care if the file exists, nor if there are read rights or write rights there. returns the File pointed to by the text field, unless it is empty; at that point, we assume the file chooser was used to point to a file and the chosen file is stored there.
getSelectedFileNames() - Method in interface gov.nih.mipav.view.FileSelector: Returns the selected file names.
getSelectedFileNames() - Method in class gov.nih.mipav.view.FileSelectorImpl
getSelectedFiles() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
getSelectedGrouping() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
getSelectedImage() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Returns an integer which represents the image that is selected.
getSelectedKeys() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Method to retrieve the private keys selected in this panel.
getSelectedKeys() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
getSelectedKeysBool() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Alternate method for retrieving private keys that were selected.
getSelectedKeysBool() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
getSelectedList() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Accessor to the list used to display the selected list.
getSelectedList() - Method in class gov.nih.mipav.view.JPanelChecklist: Returns a new list of all checkboxes selected.
getSelectedList(int) - Method in class gov.nih.mipav.view.JPanelChecklist: Returns whether or not a particular checkbox has been selected.
getSelectedList(String) - Method in class gov.nih.mipav.view.JPanelChecklist: Returns whether or not a particular checkbox has been selected.
getSelectedLUT() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Returns which LUT is currently visible.
getSelectedNodes(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController
getSelectedPaintColor(ViewJFrameBase) - Method in class gov.nih.mipav.view.ViewJComponentBase: Gets the color of the paint the user has selected from the paint toolbar.
getSelectedPanel() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns the currently selected interface panel.
getSelectedPlugins() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
getSelectedPoint() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the last selected point.
getSelectedScriptFileName() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Returns the full path and file name of the currently selected script file in the scripting toolbar.
getSelectedSequence() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
getSelectedSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Return the name of the selected surface.
getSelectedSurfaces() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Return the names of the selected surfaces.
getSelectedSurfaces(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Returns an array of SurfaceAttributes based on which surfaces are selected by the user in the surfaceList combo-box.
getSelectedTabIndex() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Returns the index of the selected panel in the tabbed pane.
getSelectedTabIndex() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
getSelectedVOI(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
getSelection() - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire: Accessor that returns the selected cost function.
getSelection(String, double[][], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getSelectionModel() - Method in class gov.nih.mipav.view.CheckTreeManager
getSelectionOffset() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
getSelfTimerDelayDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getSelfTimerDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getSelfTimerDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getSelfTimerDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getSensingMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSensitivityTypeRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSensorTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
getSeparateLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getSeqTagList() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns a list of the sequence tags in this tag table (and reference tag table).
getSequence() - Method in class gov.nih.mipav.model.file.FileDicomSQ
getSequence(boolean, int) - Method in class gov.nih.mipav.model.file.FileDicom: Gets the sequence in a sequence tag.
getSequenceDisplay() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Gets a series of Strings that are the human readable version of the data.
getSequenceLength() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Gets the length of the sequence vector.
getSequenceName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSequenceNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getSequenceShotIntervalDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getSequenceTags() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Method to retrieve the sequence tags from the file info.
getSequenceTags(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
getSequenceValues() - Method in class gov.nih.mipav.model.file.FileDicomSQItem: Return the tag values store in this sequence tag.
getSequenceVariant() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSequentialShotDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getSerialNumberDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getSeries() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesDate() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesDescription() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesHeaderBlocks() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesHeaderID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesHeaderRevisionNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesInstanceUID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID: Gets the Series Instance UID.
getSeriesNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesNumber() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSeriesProcessName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesPSDName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesRawDataSystemID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesSystemGenerationID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesTaskID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSeriesTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSeriesType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSessionErr() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provide the value of session err.
getSessionErr() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provide the value of session err.
getSessionErr() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provide the value of session err.
getSex() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get subject's sex (optional).
GetShaderEffect() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Returns the VolumeShaderEffect.
getShadingCompensation2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
getShadingCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getShadingCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getShape() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return access to the shape for rendering the annotated point.
getShape() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: returns the array of Shape3D objects.
getShape(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
getShape(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the shape of the burning point surface.
getShape(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the shape burning point surface.
getShapeFunctionsInZeroToOneInterval() - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
getShapesAtSlice(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
getSharpnessCameraSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSharpnessDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getSharpnessSettingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getShootingModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getShootingModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a short value at position in the data array.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in short format.
getShort(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that does NOT perform bounds checking.
getShort(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getShort(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getShort(int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a length of the data and deposits it into a single Short or an array of Short as needed by the tag's VM.
getShort(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getShort(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getShort(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the signed short value of one of the parameters from the table.
getShortBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getShortBuffer() - Method in class gov.nih.mipav.model.file.FilePackBit: Gets the short buffer of the image.
getShortBuffer() - Method in class gov.nih.mipav.model.file.FileRawChunk: Gets the short buffer (image).
getShortcut(String) - Static method in class gov.nih.mipav.view.Preferences: Returns a keystroke shortcut for the given command.
getShortcutCommand(KeyStroke) - Static method in class gov.nih.mipav.view.Preferences: Gets the command associated with the shortcut (if there is one).
getShortDescription(int) - Static method in class gov.nih.mipav.view.ViewImageFileFilter: Returns the dshort escription of the given file filter.
getShortFocalLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getShortLabel() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getShortLabel() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getShortMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Gets the mask image (array of short values).
getShortOp() - Method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
getShortTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getShowBound(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
GetShowBoundingBox(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Return the current display status for the bounding box for the given plane.
getShowMagIntensityEnabled(int, int, float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Determines whether to enable the showIntensity checkbox for magnification box.
getShowMagIntensityEnabled(Graphics, int, int, float, int, double, double) - Method in class gov.nih.mipav.view.ViewJComponentBase: Returns whether to enable the showIntensity checkbox for mag. box
getShowOrientationCube() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
getShowSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
GetShowSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Return the current display status for the bounding box for the given plane.
getShutterModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getShutterSpeedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getShutterSpeedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getShutterSpeedDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getShutterTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getSICenter() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSigma() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
getSigmaU() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns standard deviation U of filter.
getSigmaV() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: returns standard deviation V of filter.
getSignaFileFormat() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSignedByte() - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads signed bytes from file.
getSignedDistanceImage() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Get the signed distance transform.
getSignedDistanceMask() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Get the signed distance transform mask.
getSignedShort(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads two byte signed short from file.
getSignedShort(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads two byte signed short from file.
getSimpleRational(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getSimpleString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getSimplifiedInstance() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Simplifies the representation of this MetadataExtractor.Rational number.
getSimplifiedInstance_FlipsSignsIfNeeded() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest
getSimplifiedInstance_RemovesSignsIfNeeded() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest
getSinc(float[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
getSingularValues() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Return the one-dimensional array of singular values
getsize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.uni_elt
getSize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
getSize() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the size of the slice image in byte which represented by this object.
getSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the total size(length) of the data array.
getSize() - Method in class gov.nih.mipav.model.structures.VOI: Returns the number of contours in this VOI.
getSize(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getSize(Dimension) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Gets the size of the object taking into account the zoom.
getSize(Dimension) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Gets the size of the object taking into account the zoom.
getSize(Dimension) - Method in class gov.nih.mipav.view.ViewJComponentBase: gets the size of the object taking into account the zoom.
getSize(Dimension) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Gets the size of the object taking into account the zoom.
getSize(Dimension) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Gets the size of the object taking into account the zoom.
getSizeArray() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getSizeOfExportedDicomTags(Hashtable<String, Hashtable<String, String>>) - Method in class gov.nih.mipav.model.file.FileMinc: Get the size, in bytes, of the data which would be written to the header to store a set of dicom tags.
getSizeOfHeader() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current scannum string.
getSizeOfHeader() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getSizeOfHeader() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current scannum string.
getSizeOfHeader() - Method in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
getSizeOfWrittenName(String, int) - Method in class gov.nih.mipav.model.file.FileMinc: Returns the number of bytes that would be written to disk by calling writeName() on a given string.
getSkeletonizedArray(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Given previously determined starting point, compute the tree-structured skeleton path through the volume where no branch is shorter than the specified amount.
getSkewness() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of skewness of the pixel values in the VOI
getSkewnessB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of skewness of the blue pixel values in the VOI
getSkewnessG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of skewness of the green pixel values in the VOI
getSkewnessR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the coefficient of skewness of the red pixel values in the VOI
getSlice() - Method in class gov.nih.mipav.model.file.FileUtility.nameSliceItem
getSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getSlice() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the currently displayed image slice.
getSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
getSlice() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the slice of the image.
getSlice(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
getSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the current slider value for the slider that matches the orientation input parameter.
getSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the current slider value for the slider that matches the orientation input parameter.
getSlice(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getSlice(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Returns the slice of the input VOI in the patient coordinates displayed locally.
getSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get arbitray slider value.
getSliceAngulation() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getSliceAngulation() - Method in class gov.nih.mipav.model.file.FileInfoSPAR
getSliceCode() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getSliceContourStatistic(String, int, String) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties: Gets the statistic for a particular contour on a particular slice of a VOI.
getSliceCurves(int) - Method in class gov.nih.mipav.model.structures.VOI: Returns a list of contours on a given slice.
getSliceCurves(int, int) - Method in class gov.nih.mipav.model.structures.VOI: Returns a list of contours for the given image orientation and slice.
getSliceDim() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getSliceDuration() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: provides the sliceDuration value.
getSliceEnd() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getSliceFileInfo(int, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Build and return the fileInfo for the current slice based on the source slice, the destination slice and time slice.
getSliceInfo() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getSliceLocation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSliceMultiplier() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSliceNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
GetSliceOpacity() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
GetSliceOpacity(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Return the opacity for the given plane.
getSliceOrient() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getSliceOrientation() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getSlicePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: return the current active slicePanel interface.
getSlicePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: return the current active slicePanel interface.
getSlicePos(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
getSliceQuantity() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSliceRangeString(boolean[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Converts from a boolean array marking which slices should be extracted to a (more compact) range string indicating which slices should be extracted.
getSlicesCheck() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Get the slice check box.
getSlicesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getSliceSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get the nuber of pixels in a slice of the image.
getSliceSize(int) - Method in class gov.nih.mipav.model.structures.VOI: Returns the number of contours for a given slice.
getSliceSize(int, int) - Method in class gov.nih.mipav.model.structures.VOI: Returns the number of contours for a given image orientation and slice in a 3D image.
getSliceSpacingCoarse() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Retrieve the current "coarse" spacing between slices.
getSliceSpacingCoarse() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Retrieve the current "coarse" spacing between slices.
getSliceSpacingFine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Retrieve the current "fine" spacing between slices.
getSliceSpacingFine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Retrieve the current "fine" spacing between slices.
getSliceStart() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
getSliceStatistic(String, int) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties: Gets the statistic for all the contours of a VOI that exist on a particular slice.
getSliceStructure() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute
getSlicesWithTimeOffsets() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Gets slicesWithTimeOffsets.
getSliceThickness() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the thickness of the image slices.
getSliceThicknessDisclaimer() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get x slider value.
getSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get x negative slider value.
getSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get y slider value.
getSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get y negative slider value.
getSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get z slider value.
getSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get z negative slider value.
getSliderA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get arbitrary slider.
getSliderEvents() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
getSliderX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get x slider.
getSliderX() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the X slider.
getSliderX() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the X slider.
getSliderXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get x negative slider.
getSliderY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get y slider.
getSliderY() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the Y slider.
getSliderY() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the Y slider.
getSliderYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get y negative slider.
getSliderZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get z slider.
getSliderZ() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Return the Z slider.
getSliderZ() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Return the Z slider.
getSliderZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Get z negative slider.
getSlopeSel(double[][], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
getSlowSyncDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
GetSmallest() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Get the smallest model
getSmallestImagePixelValue() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSmallestMagnitudeNegative() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude negative value in the dataArray.
getSmallestMagnitudeNegativeB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude negative blue value in the dataArray.
getSmallestMagnitudeNegativeG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude negative green value in the dataArray.
getSmallestMagnitudeNegativeR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude negative red value in the dataArray.
getSmallestMagnitudePositive() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude positive value in the dataArray.
getSmallestMagnitudePositiveB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude positive blue value in the dataArray.
getSmallestMagnitudePositiveG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude positive green value in the dataArray.
getSmallestMagnitudePositiveR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the smallest magnitude positive red value in the dataArray.
getSmartRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getSmax() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current smax value.
getSmax() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides current smax value.
getSmax() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides current smax value.
getSmin() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current smin value.
getSmin() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides current smin value.
getSmin() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides current smin value.
getSNormal() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSOF(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Get the SOF part of header.
getSoftSkinEffectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getSoftwareLightsModel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Get the software light model.
getSoftwareLightsWorld() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Get the software light world.
getSoftwareVersions() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSolidity() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the solidity of the VOI.
getSolutions(double, Vector<Double>, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
getSolutions(double, Vector<Double>, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
getSolValue() - Method in class gov.nih.mipav.model.algorithms.NelderMead
getSolverType() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
getSolX() - Method in class gov.nih.mipav.model.algorithms.NelderMead
getSonyExposureTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDescriptor
getSonyModelIdDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getSOPInstanceUID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID: Gets the SOP Instance UID.
getSortedCurves(int) - Method in class gov.nih.mipav.model.structures.VOI: Sorts the contours based on the image default orientation.
getSortedCurves(int, int) - Method in class gov.nih.mipav.model.structures.VOI: Sorts the contours based on a given image orientation and the desired image depth for that orientation.
getSortingStatus(int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getSOS(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Get the SOS part of header.
getSource() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getSource() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the underlying image of this pixel (the image referenced by this pixel)
getSource() - Method in class gov.nih.mipav.model.structures.UpdateVOIEvent: DOCUMENT ME!
getSource() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
getSourceActions(JComponent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
getSourceBitPix() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to the sourceBitPix value.
getSourceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getSourceFile() - Method in class gov.nih.mipav.model.file.FileInfoMATLAB
getSourceList() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Accessor to the list used to display the Source.
getSourceListData() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Generates and returns the list data for the Source list from the dicom dictionary as a Vector of DicomTagIdentifier.
getSourceType() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to coded datatype value.
getSouth() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getSp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
getSpaceNavValues() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Helper method sets the values tX, tY, tZ, rX, rY, and rZ to the current space navigator values normalized on a -100 to 100 scale.
getSpaceSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Get the raytrace region space size.
getSpaceSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the ray trace space size.
getSpacingBetweenSlices() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSpecialInstructionsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getSpecialModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSpecialNumberString() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the string for this value if it has a known representation.
getSpecificCharacterSet() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSpectStudyGeneral() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getSpectStudyReconstructedData() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getSpecular() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query current optional specular color for vertex.
getSphere() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getSphereBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: The the burning point geometry sphere branch group.
getSphereBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the current burning point brach group.
getSphereCoordinates() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getSplineCurves() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
getSplineCurves() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getSpliteratorMinimumSplitSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Returns the minimum number of elements in a split of a Spliterator of this Img.
getSpliteratorMinimumSplitSize() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Returns the minimum number of elements in a split of a Spliterator of this Img.
getSplitValues() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getSplitValues() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getSplitVarIDs() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getSplitVarIDs() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
getSpotFocusPointXCoordinateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSpotFocusPointYCoordinateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSpotMeteringModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
GetSquared(Vector3f, Ellipsoid3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getSRawQualityDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getSrcImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Gets the current source image for the algorithm
getSrcImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Returns the source image.
getSrcImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: DOCUMENT ME!
getSrcImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: DOCUMENT ME!
getStackedImageDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getStackTrace(Throwable) - Static method in class gov.nih.mipav.util.MipavExceptionHandler
getStartAdjust() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
getStartCalendar() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets all the starting date of the patient's study from the all three comboboxes.
getStartDay() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the starting day of the study in the startDayBox combobox.
getStartEnd(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: In livewire mode the endpoints of each path segment along Dijkstra's curve -- between each of the user-selected points -- are stored so that the smoothed geodesic may be calculated and displayed later.
getStartEnd(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: In livewire mode the endpoints of each path segment along Dijkstra's curve -- between each of the user-selected points -- are stored so that the smoothed geodesic may be calculated and displayed later.
getStartField() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current value for the start_field.
getStartField() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current value for the start_field.
getStartField() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current value for the start_field.
getStartHorizontalBedPosition() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStartLocation() - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: DOCUMENT ME!
getStartLocation() - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
getStartLocations() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Accessor that gets the "start" variable values, with the "xspace" in 0, "yspace" in 1, and "zspace" in 2.
getStartMonth() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the starting Month of the study in the startMonthBox combobox.
getStartNumber() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the number to append to the multi file save (i.e., if you want test00.tif to be the first file, 0 is the start number and 2 is the digit number).
getStartPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get the start point world coordinate vector.
getStartPointCoordinate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the start point transform.
getStartRange() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the starting range of pixels.
getStartSlice() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getStartupFile() - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: This method returns the startup file which contains the MIPAV start-up options.
getStartX() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStartY() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStartYear() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the starting year of the study in the startYearBox combobox.
getStartZ() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getState() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
getState() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
getState() - Method in class gov.nih.mipav.model.structures.event.VOIEvent: if the VOI were to have state, this would return it. currently returns true
getState() - Method in class gov.nih.mipav.model.structures.event.VOIVectorEvent: if the VOIVector were to have state, this would return it. currently returns true
getState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the state at the beginning of events.
getState() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the state at the beginning of events.
getState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator: This method returns the memory state of the allocator.
getState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the current state of the widget shader effect.
getState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Returns the current ClassificationWidgetState GLSL Shader program parameters.
GetState(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
getStateDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getStateVector() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the state vector.
getStateVector() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the state vector.
getStaticInvVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box static inverse selection value.
getStaticName() - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Return the name of the particular registration measure without having an instance.
getStaticName() - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Return the name of the particular registration measure without having an instance.
getStaticName() - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Return the name of the particular registration measure without having an instance.
getStaticStudyGeneral() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStaticVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box static selection value.
getStats(Vector<VOIContour>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack: Gets the stats.
getStatsData(Vector<VOIStatisticalProperties>, VOIVector, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Generate the VOI shape statistics.
getStatsData(Vector<VOIStatisticalProperties>, VOIVector, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Generate the VOI shape statistics.
getStatsData(Vector<VOIStatisticalProperties>, VOIVector, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Generate the VOI statistics data.
getStatus() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
getStatus() - Method in class gov.nih.mipav.model.algorithms.Lmmin
getStatusVarId() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
getStdDev() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the standard deviation of image intensities return standard deviation of image intensities defined by the VOI.
getStdDevB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the get standard deviation of image intensities (blue channel) return standard deviation of image intensities defined by the VOI.
getStdDevCurvature() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
getStdDevG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the standard deviation of image intensities (green channel) return standard deviation of image intensities defined by the VOI.
getStdDeviation() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getStdDeviationB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getStdDeviationG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getStdDeviationR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getStdDevR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the standard deviation of image intensities (red channel) return standard deviation of image intensities defined by the VOI.
getStdSkewStatistics(AlgorithmVOIProps.Calc34D.ContourStats, Vector<Vector3f>, String, String, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the standard deviation, coefficient of skewness, coefficient of kurtosis and center of mass for a grayscale image.
getStdSkewStatisticsRGB(AlgorithmVOIProps.Calc34D.ContourStats, Vector<Vector3f>, String, String, float, float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the standard deviation, coefficient of skewness, coefficient of kurtosis and center of mass for a color image.
getStepSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Get raytrace step size.
getStepSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the ray trace step size.
getStereo() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
getStereographicRadius() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: support for unfolding.
getStereographicRadius() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: support for unfolding.
getStiffness() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Set the stiffness of the mesh, as described in BrainExtraction.pdf, that is part of the surface normal term in the surface evolution.
getStiffness() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Set the stiffness of the mesh, as described in BrainExtraction.pdf, that is part of the surface normal term in the surface evolution.
getStiffness() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the stiffness.
GetStopCriterion(int, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
getStopSlice() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getStr(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Retrieves a string value from a DICOM object.
getStraightAnnotationsPath(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
getStreams() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: Return the ImageSourceStreams.
getStreams() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: Return the ImageSourceStreams.
getStretched() - Method in class gov.nih.mipav.view.Rubberband: Returns the stretched point of the rubberband.
getString(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: Reads a string from a file of given length.
getString(int) - Method in class gov.nih.mipav.model.file.FileBase: Reads a string from a file of given length.
getString(int) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads a string from a file of given length.
getString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the specified tag's value as a String.
getString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getString(int, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getString(int, int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getString(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory
getString(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getString(int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getString(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the string value of one of the parameters from the table.
getStringArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets the specified tag's value as a String array, if possible.
getStringFromBytes(int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getStringFromFile(int) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads a string from a file of given length.
getStringFromInt32(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
getStringValue(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory
getStringValue(int, int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
getStringValue(int, Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
getStringValueArray(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets the specified tag's value as a StringValue array, if possible.
getStringValueOfKey(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
getStripByteCountsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getStripSize(ModelImage, int, int) - Method in class gov.nih.mipav.model.file.FilePackBit: This method returns the packed bit strip size.
getStrokeLength() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Returns the stroke length in pixels, which is by default 16 pixels.
getStrokePattern() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Returns this ContourPlot.Lines object's stroke pattern
getStudyDate() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyDate() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStudyDescription() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyDuration() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStudyHeaderBlocks() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyHeaderID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyHeaderRevisionNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyID() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStudyInstanceUID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID: gets the Study Instance UID.
getStudyNo() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Gets the study id from the studyNOText field.
getStudyNumber() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyTaskID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getStudyTime() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getStudyTime() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getSubElements() - Method in class gov.nih.mipav.view.JScrollMenu
getSubfileTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSubjectDistanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSubjectDistanceRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getSubjectID() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get's the subject's ID.
getSubjectName() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Get's the subject's name.
getSubjectProgramDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getSubsample() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get whether or not subsampling occurs.
getSubSample() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Accessor that gets the subsample size.
getSubsampleDimension() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
getSubsampleDimensions() - Static method in class gov.nih.mipav.view.Preferences: Used by ViewOpenImageSequence to get the subsample dimensions that were saved in the preferences file.
getSubsetDicomTagTable() - Static method in class gov.nih.mipav.model.file.DicomDictionary: Returns a reference to the subset dicom tag table.
getSubsetDicomTagTable(boolean) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Returns a reference to the subset dicom tag table.
getSubtype() - Method in class gov.nih.mipav.model.structures.VOIBase
getSucceeded() - Static method in class gov.nih.mipav.view.DICOMDisplayer: Static method that returns a boolean indicating if the program succeeded in saving the images to the home directory.
getSuccess() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
getSuffix() - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Accessor that returns the suffix.
getSumIntensities() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: get sum intensities
getSumIntensities() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the sum of image intensities defined by the VOI
getSumIntensitiesB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: get sum intensities B
getSumIntensitiesB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the sum of blue channel mage intensities defined by the VOI
getSumIntensitiesG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: get sum intensities G
getSumIntensitiesG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the sum of green channel image intensities defined by the VOI
getSumIntensitiesR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: get sum intensities R
getSumIntensitiesR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the sum of red channel image intensities defined by the VOI
getSumPixelInten() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getSumPixelIntenB() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getSumPixelIntenG() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getSumPixelIntenR() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
getSuperiorEdge() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns AC superior edge marker point for +orig to +acpc transformation in dataset ordering.
getSuperiorPt() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns most superior point marker for +acpc to +tlrc transformation in dicom ordering.
getSupplementalCategoriesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getSuppressionTechnique() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Access the surface to be rendered when moving along the path.
getSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Returns a SurfaceLink to a surface attached to this image.
getSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the TriMesh surface with the given name.
getSurfaceArea() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the surfaceArea of the VOI; return surfaceArea defined by the VOI.
getSurfaceArea() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getSurfaceArea() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
getSurfaceArea(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the size of the surface-area of the given surface.
getSurfaceArea(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the surface area for the given TriMesh surface.
GetSurfaceArea() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the surface area.
getSurfaceAreaString(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the size of the surface-area of the given surface.
getSurfaceAreaString(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the surface area for the given TriMesh surface.
GetSurfaceAreaString() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the surface area.
getSurfaceBoxPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the surface box control ???
getSurfaceCenter(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the center of the TriMesh surface.
getSurfaceCheck() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Get the surface check box.
getSurfaceClipCB() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Get the surface clip check box.
getSurfaceCoilIntensityCorrection() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSurfaceCoilsCorrectionType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSurfaceCoilType() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSurfaceControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
getSurfaceCurvatures() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Access the computed curvatures for the specified triangle mesh surface.
getSurfaceDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return surfacePanel from parent frame.
getSurfaceDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return surfacePanel from parent frame.
getSurfaceFileName() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Return .sur file reference name.
getSurfaceKeys() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets paths to surface files for this image.
getSurfaceList() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Get the reference to the surface list.
getSurfaceMask() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Returns the SurfaceMask object.
getSurfaceMask(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the surface mask from this image.
getSurfaceMaskColor(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the surface mask from this image.
getSurfaceOpacity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Get the current surface opacity value.
getSurfacePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the surface panel.
getSurfaceRender() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Accessor to set the render base object This reference used to update volumes according to the render view base instance type.
getSurfaces() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Returns the surface hashtable for this image.
getSurfaceStates() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
GetSurfaceTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the surface mask Texture.
getSurfaceTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Returns the surface texture panel interface.
getSurfaceTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Returns the surface texture panel interface.
getSurfaceTexturePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Returns the surface texture panel mainPanel interface.
getSurfaceTexturePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Returns the surface texture panel mainPanel interface.
getSurfaceVector() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Return the surface vector reference.
getSurfaceVolume(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the volume of the TriMesh surface.
getSurfaceVolumeString(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the volume of the TriMesh surface.
getSVNChangedDate(String) - Static method in class gov.nih.mipav.view.MipavUtil: Get the date from auto populated SVN date string.
getSVNRevisionNum(String) - Static method in class gov.nih.mipav.view.MipavUtil: Get the revision number from auto populated SVN revision string.
getSwappedVolume() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Return the images extracted from the source image.
getSwapPF() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSwapXY() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getSwapXZ() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getSwapYZ() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getSweepPanoramaDirectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getSystemConfigHospitalName() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSystemGenerationID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getSystemID() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getT() - Method in class gov.nih.mipav.model.algorithms.ODE
getT() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getT1ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
getT2ResultStack() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
getTabbedPane() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
getTabbedPane() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Accessor to the tabbed pane.
getTabbedPane() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Accessor to the tabbed pane.
getTabbedPane() - Method in class gov.nih.mipav.view.ViewJFrameMessage
getTable() - Method in class gov.nih.mipav.model.file.XMLPSet: Gets the hashtable of parameters.
getTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Gets the table of parameters.
getTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Gets the table of surfaces.
getTable(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.model.structures.TableSorter.SortableHeaderRenderer: DOCUMENT ME!
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D.JButtonCellRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D.JButtonCellRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D.JButtonCellRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagCodeRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagReferenceRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.mipav.view.MIPAVTableCellRenderer: DOCUMENT ME!
getTableClass() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
getTableDestinationId() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
getTableHeader() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getTableIntLog() - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: DOCUMENT ME!
getTableLength() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
getTableLocation() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTableModel() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getTablePosition() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTables() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
getTag() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier: Accessor to the DICOM tag held.
getTag() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
getTagAfPointsInFocus() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getTagCount() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the number of tags set in this Directory.
getTagDataString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
getTagElem(String) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Extract the element identifier (removing the group id).
getTagGroup(String) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Extract the group to which a dicom or minc element belongs to.
getTagKey() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: returns the key to the edited tag (group,element) for the tag (ie., "0010,0040").
getTagKey() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: returns the key to the edited tag (group,element) for the tag (ie., "0010,0040").
getTagKey() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: returns the key to the edited tag (group,element) for the tag (ie., "0010,0040").
getTagList() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Deprecated.
See getTagListCopy()
getTagList() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
getTagList() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
getTagListCopy() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns a copy of all of the tags in this table, including tags from the reference tag table.
getTagListTextField() - Method in interface gov.nih.mipav.view.dialogs.DicomTagSelectorImpl
getTagListTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
getTagListUnique() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns only the tags stored directly in this tag table, not including tags from the reference tag table.
getTagName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Get the name of the tag, such as Aperture, or InteropVersion.
getTagName() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
getTagName(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns the name of a specified tag as a String.
getTagName(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Provides the map of tag names, hashed by tag type identifier.
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifImageDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifInteropDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory
getTagNameMap() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MockDirectory
getTags() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Returns an Iterator of Tag instances that have been set in this Directory.
getTagTable() - Method in class gov.nih.mipav.model.file.FileInfoDicom: Returns a reference to the tag table for this dicom file info.
getTagTable() - Method in interface gov.nih.mipav.view.dialogs.DicomTagSelectorImpl
getTagTable() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
getTagType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Gets the tag type as an int
getTagTypeHex() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Gets the tag type in hex notation as a String with padded leading zeroes if necessary (i.e.
getTagValue() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
getTagVids(Vector<Integer>, String, Vector<Vector<String>>) - Method in class gov.nih.mipav.model.algorithms.libdt
getTalairachCenter() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns Talairach center for +acpc to +tlrc transformation in dicom ordering.
getTalairachTransformInfo() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns the talairach transform information.
getTarget() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query the current target of the light.
getTarget() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Returns the TransformGroup this behavior acts on.
getTarget() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Returns the TransformGroup this behavior acts on.
getTargetSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Return the currently targeted surface.
getTAxisOffsets() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Gets time axis offsets.
getTE() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTE2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTeleconverterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getTensorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Return the tensor image.
getTerminalClassCounts() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
getTerminalClassCounts() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
GetTestFrameRate() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
GetTestFrameRate() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer
getTexCoord(ModelTriangleMesh, int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Calculates and returns the start point texture coordinate for a new starting point inside an existing triangle.
getTexCoord(ModelTriangleMesh, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Get the the triangle texture coordinate from the given triangle index.
getTexCoord(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
getTexCoord(TriMesh, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Calculates and returns the start point texture coordinate for a new starting point inside an existing triangle.
getTexCoord(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Get the the triangle texture coordinate from the given triangle index.
getTexCoordCopy() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the texture coordinates of a triangle mesh.
getTexCoordGeneration() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Access automatic texture coordinate generation parameters associated with volume for a 3D texture.
getText() - Method in class gov.nih.mipav.model.structures.VOIText: Gets the displayed text.
getText() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
getTextArea() - Method in class gov.nih.mipav.view.components.WidgetFactory.ScrollTextArea: JTextArea accessor
getTextArea() - Method in class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea: DOCUMENT ME!
getTextFont() - Method in class gov.nih.mipav.model.structures.VOIText: Returns the Font.
getTextImageNumber() - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
getTextSize() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getTextStamp1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTextStamp2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTextStamp3Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTextStampDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTextString() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
getTextualDataDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getTexture() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Access 3D texture object.
getTextureImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Returns the ModelImage used to generate the Texture3D.
getTextureImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns The ModelImage that is the data source for the Texture3D.
getTextureImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Returns The ModelImage that is the data source for the Texture3D.
getTextureImageOn() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getTextureLUTOn() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getTextureOn() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
getTextureStatus() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Returns the texture status, either TEXTURE, VERTEX_COLOR, or NONE.
getTextureStatus() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns the texture status, either TEXTURE, VERTEX_COLOR, or NONE.
getTextureUnitState() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Returns the volume texture TextureUnitState.
getTextVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation
getTextWidth() - Method in class gov.nih.mipav.model.structures.VOIText
getTheta() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getTheta() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns roation angle theta in radians of filter.
getTheta() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Accessor that returns the protractor angle.
getTheta(float[]) - Method in class gov.nih.mipav.model.structures.VOIProtractor: Gets the angle between the two lines of the protractor.
getThickness() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getThickness() - Method in class gov.nih.mipav.model.structures.VOI: Returns the thickness of the VOI
getThird() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet
getThread() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery.MoveRequestInfo: DOCUMENT ME!
getThreshold() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
getThreshold() - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: getThreshold - accessor that returns the threshold value.
getThresholdB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
getThresholdFill() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: DOCUMENT ME!
getThresholdG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
getThresholdingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getThresholdMode() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
getThresholdNeighborList(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getThresholdR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
getThumbnail() - Method in class gov.nih.mipav.model.file.FileImageXML: Returns the thumbnail associated with the xml file (saved in header).
getThumbnailBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory
getThumbnailDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getThumbnailDimensionsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getThumbnailLengthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDescriptor
getThumbnailOffsetDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getThumbnailOffsetDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDescriptor
getThumbnailSizeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getTI() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTicks(double, double, int, double[], double[]) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
getTiffFormatCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat
getTImageSlider() - Method in class gov.nih.mipav.view.ViewControlsImage
getTime() - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: getTime.
getTime() - Method in class gov.nih.mipav.model.algorithms.libdt
getTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getTime() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's time.
getTime() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Get the system timestamp.
getTime(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Get the time of visitation for an image element.
getTimeCreatedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getTimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getTimeDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getTimeFrames() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTimeFunction() - Method in class gov.nih.mipav.model.algorithms.InverseLaplace: getTimeFunction.
getTimeFunction() - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: getTimeFunction.
getTimerRecordingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTimeSentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getTimeSlice() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns the time slice to save at; for TIFF, because TIFF only saves to 3D.
getTimeSlice() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Gets the time slice of the image.
GetTimeSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Returns the current rendered time-slice for 4D images.
getTimeStamp() - Method in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
getTimeStamp() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getTimeStep() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Get the time step for the PDE solver.
getTimeStep() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Gets timeStep.
getTimeWindowImages() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTimeWindowLowerLimit() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTimeWindows() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTimeWindowUpperLimit() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTimeZone(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory
getTimeZoneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getTitle() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
getTitle() - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Gets title.
getTitle() - Method in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode
getTitle() - Method in class gov.nih.mipav.view.ProgressChangeEvent: Returns the title of the progress dialog
getTitle() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Gets the title for the graph.
getTitleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTlrcAC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets anterior comissure in tlrc space.
getTlrcDim() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets dims in tlrc space.
getTlrcPC() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets posterior comissure in tlrc space.
getTlrcRes() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Gets resoltion in tlrc space.
getTMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Display the mesh in the SurfaceRenderer:
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and.
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and.
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Gets the tolerance vector based on the degrees of freedom (the length of the tolerance is the degrees of freedom) and the level of subsampling (1, 2, 4, 8).
getTolerance(int, boolean, float) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
getToneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getToneLevelDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint
getToolBar() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Return paint tool-bar.
getToolBar() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Returns the VOIToolbar.
getTools() - Method in class gov.nih.mipav.view.ViewControlsImage: Accessor for the tool bar held by these controls.
getToolTip() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
getToOrigin() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
getTopX() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of top X boundaries for conversion to Talairach space.
getTopY() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of top Y boundaries for conversion to Talairach space.
getTopZ() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns array of top Z boundaries for conversion to Talairach space.
getTotal() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: The amount of total memory the thread found.
getTotalArcLength() - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Returns total arc-length of the segment.
getTotalArea() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalArea
getTotalAreaB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalAreaB
getTotalAreaG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalAreaG
getTotalAreaR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalAreaR
getTotalCounts() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTotalFrames() - Method in class gov.nih.mipav.model.file.FileInfoAvi: DOCUMENT ME!
getTotalImageNumber() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getTotalLengthString(float[], int[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the total length of this contour as a string.
getTotalPixels() - Method in class gov.nih.mipav.model.structures.ModelHistogram: Gets the total pixel count.
getTotalPostTriggerDelayTime() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTotalStatistic(String) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties: Gets the total statistics for all elements of the VOIs that are included in this properties object.
getTotalVolume() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalVolume
getTotalVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Return the total volume of all this treatment set's burns.
getTotalVolumeB() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalVolumeB
getTotalVolumeG() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalVolumeG
getTotalVolumeR() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: getTotalVolumeR
getTouchAeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getTQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getTR() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTraceImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Trace Image.
getTrackingPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: return the tracking point location
getTrackProperties(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getTrailer() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults
getTrans() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: accessor for trans.
getTrans() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: accessor for trans.
getTrans() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: accessor for trans.
getTrans() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: accessor for trans.
getTransArray() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Access that returns an array containing the transformation parameters.
getTransArray() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Access that returns an array containing the transformation parameters.
getTransArray() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Access that returns an array containing the transformation parameters.
getTransferData(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.ImageConverter
getTransferData(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: DOCUMENT ME!
getTransferData(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
getTransferDataFlavors() - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.ImageConverter
getTransferDataFlavors() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: DOCUMENT ME!
getTransferDataFlavors() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
GetTransferedValue(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
getTransferFunction() - Method in class gov.nih.mipav.model.structures.ModelLUT: Accessor that returns the transfer function.
getTransferFunction() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Get the current transfer function we are working with.
getTransferFunction() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Get the current transfer function we are working with.
getTransferFunction() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Get the current transfer function we are working with.
getTransferFunction() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Get the current transfer function we are working with.
getTransferFunction(int) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB: Get the transfer function.
getTransferLine() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

This method is used to obtain the VOIBase Single Transfer Line.
getTransferLine() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

This method is used to obtain the VOIBase Single Transfer Line from ViewJFrameComponentHistoLut.
getTransferSyntaxID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Gets the transfer syntax ID of the data.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Accessor that returns the matrix calculated in this algorithm.
getTransform() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Get transformation matrix from Image B to Image A.
getTransform() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Get the current probe transform position.
getTransform(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Converts a row of p into 3x3 transformation matrix.
getTransform(double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Converts row of p into 3x3 matrix.
getTransform1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTransformBtoA() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Accesses xfrm from point set B to point set A.
getTransformBtoA() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Accesses xfrm from point set B to point set A.
getTransformDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTransformDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Returns transformed volume.
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: accessor to get the internally registered image.
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: accessor to get the internally registered image.
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: accessor to get the internally registered image.
getTransformedImage() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: accessor to get the internally registered image.
getTransformFromX(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Converts row of p into 3x3 matrix.
getTransformHalf() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Accessor that returns the matrix calculated in this algorithm divided by 2.
getTransformHalf() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Accessor that returns the matrix calculated in this algorithm divided by 2.
getTransformHalf() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Accessor that returns the matrix calculated in this algorithm divided by 2.
getTransformHalf() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Accessor that returns the matrix calculated in this algorithm divided by 2.
getTransformID() - Method in class gov.nih.mipav.model.structures.TransMatrix: Returns the transform ID associated with the matrix.
getTransformID() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Returns the transform ID associated with the matrix.
getTransformIDFromStr(String) - Static method in class gov.nih.mipav.model.structures.TransMatrix: Returns the transform ID associated with a string.
getTransformIDFromStr(String) - Static method in class gov.nih.mipav.model.structures.TransMatrixd: Returns the transform ID associated with a string.
getTransformIDStr() - Static method in class gov.nih.mipav.model.structures.TransMatrix: Return the list of transform ID strings (for edit attributes combo box.
getTransformIDStr() - Static method in class gov.nih.mipav.model.structures.TransMatrixd: Return the list of transform ID strings (for edit attributes combo box.
getTransformIDStr(int) - Static method in class gov.nih.mipav.model.structures.TransMatrix: Return the string associated with the matrix transform ID.
getTransformIDStr(int) - Static method in class gov.nih.mipav.model.structures.TransMatrixd: Return the string associated with the matrix transform ID.
getTransformMatchtoBase() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Accessor that returns the transformation from match to base.
getTransformMatchtoBase(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Accessor that returns the transformation from match to base.
getTransformMigsagittal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Accessor that returns the z rot and x and y trans from the matrix calculated in this algorithm.
getTransformMigsagittal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Accessor that returns the z rot and x and y trans from the matrix calculated in this algorithm.
getTransformMigsagittal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Accessor that returns the z rot and x and y trans from the matrix calculated in this algorithm.
getTransformMigsagittal() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Accessor that returns the z rot and x and y trans from the matrix calculated in this algorithm.
getTranslate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the burning point center coordinates.
getTranslate() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the burning point center coordinates.
getTranslate() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
GetTranslate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode: Return the translation vector.
GetTranslate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Return the translation vector.
GetTranslate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Returns the translation vector.
getTranslateSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the translation vector for the surface with the given name.
getTranslateSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the translation vector for the surface with the given name.
getTranslateToCenter(Shape3D) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
getTranslation() - Method in class gov.nih.mipav.model.file.FileInfoAfni: Returns T03, T13, and T23 in the transformationmatrix.
getTranslationBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the translation range for brute force registration:
getTranslationCutoffValue() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getTranslationScaleFactor() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getTransmitAttenuatorSetting() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTransmitCoilName() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getTransparency() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
getTransparency() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Gets the mesh transparency.
getTreatmentInfo(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Get information about a treatment.
getTreeA() - Method in class gov.nih.mipav.view.JPanelTreeController: there is no programmatic way to determine which arrow is pointing where.
getTreeB() - Method in class gov.nih.mipav.view.JPanelTreeController: there is no programmatic way to determine which arrow is pointing where.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel.JFileTreeCellRenderer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer: DOCUMENT ME!
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOITreeRenderer: DOCUMENT ME!
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOITreeRenderer: DOCUMENT ME!
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreeRenderer: DOCUMENT ME!
getTreeLayout() - Method in class gov.nih.mipav.view.JPanelTreeController: Returns the layout of the associated display panel or "how the arrows point", not the layout of the buttons themselves.
getTreeRoot() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Method to return tree root.
getTreTR() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
getTriangleArrayIndices(int, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
getTriangleDetails() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
getTriangleMap() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Access the hash map of triangles.
getTriangleMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
getTriangleMesh() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.SurfaceLoaderSUR: Access the triangle mesh representation for the loaded surface data.
getTriangleNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the array of normal vectors for each triangle.
getTriangleQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: The number of triangles currently in the table.
getTriangles() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getTriggerTime() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getTriImage(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Returns a reference to one of the component tri-image components.
getTriImageFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Method that returns the tri image frame if it exists else returns null.
getTriImg() - Method in class gov.nih.mipav.view.ViewJFrameBase: Get the ViewJFrameTriImage reference.
getTrilinear(int, double, double, double, int[], double[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Performs trilinear interpolation of image data.
getTrilinear(int, float, float, float, int[], float[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Performs trilinear interpolation of image data.
getTriLinear(float[], int, int, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: getTriLinear - version of get that performs trilinear interpoloation.
getTriLinear(float[], int, int, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: getTriLinear - version of get that performs trilinear interpoloation.
getTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Version of get that performs tri-linear interpoloation.
getTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getTriLinear(float, float, float, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
getTrilinearC(int, double, double, double, int[], byte[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Performs trilinear interpolation of image data.
getTrilinearC(int, float, float, float, int[], byte[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Performs trilinear interpolation of image data.
getTriLinearVal3D(float, float, float, int, int, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Version of get that performs tri-linear interpoloation.
getTriLinearVal3D(float, float, float, int, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Version of get that performs tri-linear interpoloation.
getTrimAdjacient() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get the trim parameter (trimming contour of adjacent points).
getTrimMask() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get the TRIM parameter (trimming VOIcontour of points).
getTrimVoi() - Static method in class gov.nih.mipav.view.Preferences: Accessor to get the TRIM parameter (trimming VOIcontour of points).
getTriPlanarViewBG() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Return the triplanar view branch group.
getTS() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getTSpace() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of T Space text field.
getTStart() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of T Start text field.
gettTalVoxLabel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getTurobFactor() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getTwoTailInvTStatsitic(int, double) - Static method in class gov.nih.mipav.model.algorithms.StatisticsTable: Finds the value of the two-tail t-statistic that produces the given level of significance for the given number of degrees of freedom.
getTX() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: X Translation
getTY() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Y Translation
getType() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return the type of this tag (determined from its value representation (vr)).
getType() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the type of tag, depending on the value representation.
getType() - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR
getType() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getType() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Returns the surface type keyword:
getType() - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Returns the surface type keyword:
getType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Knot: Get the type of knot (linked or unlinked)
getType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunk
getType() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath
getType() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the parameter data type.
getType() - Method in class gov.nih.mipav.model.structures.BufferBase: Get the primitive type of the buffer.
getType() - Method in class gov.nih.mipav.model.structures.BufferBoolean: Return byte.class, type returned by get()
getType() - Method in class gov.nih.mipav.model.structures.BufferByte: Return byte.class
getType() - Method in class gov.nih.mipav.model.structures.BufferDouble: Return double.class
getType() - Method in class gov.nih.mipav.model.structures.BufferFloat: Return float.class
getType() - Method in class gov.nih.mipav.model.structures.BufferInt: Return int.class
getType() - Method in class gov.nih.mipav.model.structures.BufferLong: Return long.class
getType() - Method in class gov.nih.mipav.model.structures.BufferShort: Return short.class
getType() - Method in class gov.nih.mipav.model.structures.BufferUByte: Return byte.class
getType() - Method in class gov.nih.mipav.model.structures.BufferUInt: Return int.class
getType() - Method in class gov.nih.mipav.model.structures.BufferUShort: Return short.class
getType() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the image buffer type.
getType() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the type of this contour.
getType() - Method in class gov.nih.mipav.view.ColorWheel
getType() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the type of widget (Circle, Triangle, Square).
getType(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Accessor that returns the type of the tag (different from, but related to the vr).
getType(FileDicomTagInfo.VR) - Static method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the type of tag, depending on a value representation value.
getTypeCode() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Gets the type code for this VR.
getTypeCode(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: Gets the type code of a given integer hash index.
getTypeCodeName(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: gets the type code name of a given integer hash index for example: getTypeCodeName( RTC.DD_PatientID ) returns "LO"
getTypeDefaultExtensions() - Static method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Accessor that returns the static list of type extensions (just the default extension).
getTypeFromNum(int) - Static method in enum gov.nih.mipav.model.file.FileSVS.Type
getTypeFromNum(int) - Static method in enum gov.nih.mipav.model.file.FileTiff.Type
getTypeFromString(String) - Static method in class gov.nih.mipav.model.scripting.parameters.Parameter: Extracts and returns the base data type (e.g., PARAM_LIST if 'list_float') from a type String read in from a script.
getTypeInts() - Static method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Accessor that returns the static list of type integers.
getTypeMax() - Method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType: This method return the max value allowed of the type.
getTypeMax(int) - Static method in class gov.nih.mipav.model.structures.ModelStorageBase: This method return the max value allowed of the type
getTypeMin() - Method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType: This method returns the min value allowed of the type.
getTypeMin(int) - Static method in class gov.nih.mipav.model.structures.ModelStorageBase: his method return the min value allowed of the type
getTypeNames() - Static method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Accessor that returns the static list of type names.
getTypeString() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the String representation of the parameter's data type.
getTypeString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Return the full type of this parameter (e.g.
getTypeString() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the image type.
getTypeString() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Return a string which describes the type of light.
getTypeString(int) - Static method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the String which should be used to indicate a given parameter data type when writing it to a script.
getTZ() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Z Translation
getU() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Return the left singular vectors
getU(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the image value at pixel (x,y), call it u(x,y).
getU(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the image value at voxel (x,y,z), call it u(x,y,z).
getUbuntuMono(float, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider: Returns the Ubuntu Mono font for the specified font size and style
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a short value (unsigned byte[0:255]) at position in the data array.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in byte format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in unsigned byte format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in unsigned byte format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in unsigned byte format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in unsigned byte format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in short format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in short format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in short format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in short format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in short format.
getUByte(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that does NOT perform bounds checking.
getUByte(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getUByte(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getUByte(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getUByte(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getUByteBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that performs bi-linear interpoloation.
getUByteTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that performs tri-linear interpoloation.
getUID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: Gets the UID for a simple PDU type.
getUID() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that returns the Unique ID (original hash code for object).
getUIDs(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Read in the DICOM file and parses the header to find the UIDs needed to send the image.
getUInt(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads four unsigned bytes from file.
getUInt(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads four unsigned bytes from file.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a long value (unsigned int) at position in the data array.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in int format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in unsigned short format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in unsigned short format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in unsigned long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in long format.
getUInt(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that does NOT perform bounds checking.
getUInt(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getUInt(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getUInt(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getUInt(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getUInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns an unsigned 16-bit int calculated from the next two bytes of the sequence.
getUInt16(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns an unsigned 16-bit int calculated from two bytes of data at the specified index.
getUInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Get a 32-bit unsigned integer from the buffer, returning it as a long.
getUInt32(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Get a 32-bit unsigned integer from the buffer, returning it as a long.
getUInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns an unsigned 8-bit int calculated from the next byte of the sequence.
getUInt8(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Returns an unsigned 8-bit int calculated from one byte of data at the specified index.
getUIntBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs bi-linear interpoloation.
getUIntTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getUnequalDim() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Accessor that returns the boolean indicating if unequal dimensions are allowed in complex images.
getUnicodeDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase: The Windows specific tags uses plain Unicode.
getUniqueDataValue(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getUniqueID() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns a unique number for DICOM communiciton.
getUniqueID() - Method in class gov.nih.mipav.view.ViewVOIVector
getUniqueID16() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns a unique number for DICOM communiciton.
getUniqueID8() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns a unique number for DICOM communiciton.
getUniqueOddID() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns an ODD unique number for DICOM communiciton.
getUniqueOddID16() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns an ODD unique number for DICOM communiciton.
getUniqueOddID8() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Returns an ODD unique number for DICOM communiciton.
getUniqueTimepoints() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
getUnit(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getUnitFromAbbrev(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getUnitFromLegacyNum(int) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Unit
getUnitFromString(String) - Static method in class gov.nih.mipav.model.file.FileMincHDF: Return the proper unit based on a given unit string (abbrevation or full word).
getUnits() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
getUnitsOfMeasure() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the units of measure.
getUnitsOfMeasure() - Method in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
getUnitsOfMeasure() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the units used to measure all dimensions of the image.
getUnitsOfMeasure() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Accessor that returns the units of measure for each dimension.
getUnitsOfMeasure(int) - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the units of measure for the given dimension.
getUnitsOfMeasure(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the unit used to measure the specific dimension of image.
getUnitsOfMeasure(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the units of measure for the image translated into the Patient-Coordinate systsm:
getUnitsOfMeasureAbbrevStr() - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should now use enum
getUnitsOfMeasureAbbrevStr(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should now use enum
getUnitsOfMeasureFromStr(String) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should now use enum
getUnitsOfMeasureStr() - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should use enum
getUnitsOfMeasureStr(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
should now use enum
getUnitsOfType() - Method in enum gov.nih.mipav.model.file.FileInfoBase.UnitType
getUnitsOfType(FileInfoBase.UnitType) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.UnitType
getUnitSpecifierDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
getUniverse() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Accessor for the universe for this 3D object.
getUnknownDataDumpDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getUnnormalized3DSigmas() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Returns the un-normalized sigmas in three dimensions (even if the input image is 2D).
getUnnormalizedSigmas() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: DOCUMENT ME!
getUnpermutedVarID(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getUnsignedByte(byte[], int) - Method in class gov.nih.mipav.model.file.FileBase: Converts byte data to unsigned int.
getUnsignedShort(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: Reads two unsigned bytes from file.
getUnsignedShort(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads two unsigned bytes from file.
getUnsignedShort(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads two unsigned bytes from file.
getUntwistTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
getUntwistTestNoBounds() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
getUnused1() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: provides current unused1 value.
getUnused2() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current unused2 value.
getUnused3() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current unused3 value.
getUpperBound() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the upper bound slider.
getUpperBound() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Accessor to the upper bound slider.
getUpperBound() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the upper bound text as a number.
getUpperBound() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the upper bound slider.
getUpperBoundB() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the upper bound blue slider.
getUpperBoundB() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getUpperBoundB() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the upper bound text as a number.
getUpperBoundB() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the upper bound blue slider.
getUpperBoundG() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the upper bound green slider.
getUpperBoundG() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getUpperBoundG() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the upper bound text as a number.
getUpperBoundG() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the upper bound green slider.
getUpperBoundR() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor to the upper bound red slider.
getUpperBoundR() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getUpperBoundR() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Returns the upper bound text as a number.
getUpperBoundR() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to the upper bound red slider.
getUpperList() - Method in class gov.nih.mipav.view.JPanelListController: Convience method to get list A.
getUpperThreshold() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns the upper threshold image value for whichever image is current selected.
getUpperThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram
getUpperThreshold() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
getUpperThreshold() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Returns the upper threshold value.
getUpperThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Returns the upper threshold value.
getUpperTree() - Method in class gov.nih.mipav.view.JPanelTreeController: Convience method to get Tree A.
getUptimeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getUpVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
getUrgencyDefault() - Static method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
getUrgencyDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getURLs() - Method in class gov.nih.mipav.plugins.JarClassLoader
getUsed() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: The amount of used memory the thread found.
getUsedFlag() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint
getUsedHeapMemory() - Static method in class gov.nih.mipav.view.MipavUtil: Return the amount of heap memory that MIPAV is currently using.
getUser() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry
getUser0() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser1() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
getUser2() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser3() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser4() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser5() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser6() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser7() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser8() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUser9() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getUserCommentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getUserDefaultDir() - Static method in class gov.nih.mipav.view.ViewUserInterface
getUserInformation() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Accessor to return User Information.
getUserInterface() - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
DOCUMENT ME!
getUserInterface() - Method in class gov.nih.mipav.view.ViewJFrameBase: Accessor that returns the user interface.
getUserProfileDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getUserShortcutTable() - Static method in class gov.nih.mipav.view.Preferences: Gets the User defined Hashtable used to store the shortcut keystrokes and commands.
getUseVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that returns useVOI.
getUseVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder.
getUseVOI() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor that returns useVOI.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferBase: Gets a int value (unsigned short) at position in the data array.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferBoolean: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferByte: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferDouble: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferFloat: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferInt: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferLong: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferShort: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferUByte: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferUInt: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.BufferUShort: Gets the data in unsigned short format.
getUShort(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that does NOT perform bounds checking.
getUShort(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: nD get data fuction where bounds checking is NOT performed.
getUShort(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 2D get data fuction where bounds checking is NOT performed.
getUShort(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 3D get data fuction where bounds checking is NOT performed.
getUShort(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: 4D get data fuction where bounds checking is NOT performed.
getUShort(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Return the unsigned short value of one of the parameters from the table.
getUShortBiLinear(float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Version of get that performs bi-linear interpoloation.
getUShortTriLinear(float, float, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: version of get that performs tri-linear interpoloation.
getUtil() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
getUx(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the first-order x-derivative of the image value at pixel (x,y), call it u_x(x,y).
getUx(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the first-order x-derivative of the image value at voxel (x,y,z), call it u_x(x,y,z).
getUxx(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the second-order x-derivative of the image value at pixel (x,y), call it u_xx(x,y).
getUxx(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order x-derivative of the image value at voxel (x,y,z), call it u_xx(x,y,z).
getUxy(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the second-order mixed-derivative of the image value at pixel (x,y), call it u_xy(x,y).
getUxy(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order xy-mixed-derivative of the image value at voxel (x,y,z), call it u_xy(x,y,z).
getUxz(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order xz-mixed-derivative of the image value at voxel (x,y,z), call it u_xz(x,y,z).
getUy(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the first-order y-derivative of the image value at pixel (x,y), call it u_y(x,y).
getUy(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the first-order y-derivative of the image value at voxel (x,y,z), call it u_y(x,y,z).
getUyy(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the second-order y-derivative of the image value at pixel (x,y), call it u_yy(x,y).
getUyy(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order y-derivative of the image value at voxel (x,y,z), call it u_yy(x,y,z).
getUyz(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order yz-mixed-derivative of the image value at voxel (x,y,z), call it u_yz(x,y,z).
getUz(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the first-order z-derivative of the image value at voxel (x,y,z), call it u_z(x,y,z).
getUzz(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the second-order z-derivative of the image value at voxel (x,y,z), call it u_zz(x,y,z).
getV() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Return the eigenvector matrix
getV() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Return the right singular vectors
getV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
getV(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
getV_index(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
getV1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
getV2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
getv6Num() - Method in enum gov.nih.mipav.model.file.FileSVS.Type
getv6Num() - Method in enum gov.nih.mipav.model.file.FileTiff.Type
getVal(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Returns the value in a 2D image buffer of the pixel at location row, col.
getVal(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Returns the value in a 2D image buffer of the pixel at location col, row.
getVal(float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Returns the value in a 3D image buffer of the pixel at location slice, row, col.
getVal(float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Returns the value in a 3D image buffer of the pixel at location col, row, slice.
getValidRange() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF: Gets the valid range for image data values
getValString(String) - Method in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Gets the value of the Img at the position currently referenced by this Pixel.
getValue() - Method in class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.indexValue
getValue() - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: Get the numeric value for the heap record.
getValue() - Method in class gov.nih.mipav.model.algorithms.libdt.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueItem
getValue() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueItem: DOCUMENT ME!
getValue() - Method in class gov.nih.mipav.model.file.FileXML.XMLAttributes
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorEncoding
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent
getValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair
getValue() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterInt: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterLong: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterShort: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterString: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Returns the parameter value.
getValue() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: panel may have many seperate fields of entry for the user to speeratetly enter some values.
getValue() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
getValue() - Method in class gov.nih.mipav.view.JPanelProgressBar: Used to get the present value of the progress bar.
getValue() - Method in interface gov.nih.mipav.view.ProgressBarInterface: public void setValue( int value, boolean separateThread ); public void setValueImmed( int value );
getValue() - Method in class gov.nih.mipav.view.ProgressChangeEvent: Returns the value of the progress bar.
getValue() - Method in class gov.nih.mipav.view.ViewJProgressBar: Used to get the present value of the progress bar.
getValue() - Method in class gov.nih.mipav.view.ViewJSlider
getValue(boolean) - Method in class gov.nih.mipav.model.file.FileDicomTag: Translates the tag value into an understandable string so no other class need understand how to parse this information.
getValue(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
getValue(int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Returns the value of this Img at the specified position.
getValue(int, int) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Get the value at the x, y position of the data array.
getValue(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Returns the value of this Img at the specified position.
getValue(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns the value matching the key as a meaningful (ie., non-coded) string .
getValue(FileDicomKey, boolean) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns the value matching the key as a Java data element get(key).getValue(parse).
getValue(String) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns the value matching the key as a meaningful (ie., non-coded) string .
getValue(String, boolean) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns the value matching the key as a Java data element get(keyStr).getValue(parse).
GetValue(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Returns the value of the specified axis-aligend clip plane.
GetValue(int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
GetValue(int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
getValue2D(float, float, float, int, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Get the value of a 2D point.
getValue3D(float, float, float, int, int, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Get the value of a 4D point.
getValue3D(float, float, float, int, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Get the value of a 3D point.
getValueAt(int, int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getValueBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
getValueLength() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.fraud_pair_item
getValueList() - Method in class gov.nih.mipav.model.file.FileDicomTag: Returns the value(s) as an array so that each tag with a value multiplicity of more than 1 -- ie, TypeString items separated by '\' -- is its own element in the array.
getValueMinMaxDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getValueMultiplicity() - Method in class gov.nih.mipav.model.file.FileDicomTag: Accessor that returns the value multiplicity of the tag.
getValueMultiplicity() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the value multiplicity of the tag.
getValueRepresentation() - Method in class gov.nih.mipav.model.file.FileDicomTag: Return the value representation (vr) of this tag.
getValueRepresentation() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the value representation of the tag.
getValues() - Method in class gov.nih.mipav.view.dialogs.JDialogServer: Returns the values entered into the text fields.
getValues(AlgorithmRegBSpline.Options, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: Extract the values from the specified set of controls and store them into the options structure used by the algorithm.
getValueString() - Method in class gov.nih.mipav.model.file.FileMincAttElem: Returns the value stored in this minc attribute as a String.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns the value of the Parameter converted into String form (suitable for writing out to a script).
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterInt: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Returns the parameter list in String form, separated by commas (with commas in the list elements escaped with backslashes ('\')).
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterLong: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterShort: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterString: Returns the parameter value as a string.
getValueString() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Returns the parameter value as a string.
getValueType() - Method in class gov.nih.mipav.model.file.XMLParameter: Gets the parameter's value-type.
getVarArray() - Method in class gov.nih.mipav.model.file.FileInfoMinc: Gets the array with the variable information.
getVarElem(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Accessor that returns the variable element at the indicated index in the variable array.
getVariableBandwidth() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVariableFlipAngleFlag() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getVariableID(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getVariableImportance() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
getVariableNames() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
getVariablesFromDialog(JDialogRegistrationOAR2D, boolean) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Called from inside the JDialogRegistrationOAR2D class when the user has set the parameters and closes the dialog.
getVariableThresholds() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Accessor that tells if the thresholds vary with region growth.
getVariableThresholds() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: DOCUMENT ME!
getVariableThresholds() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Accessor to checkbox that tells if thresholds vary with region growth.
getVariance(int, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Compute the variance given the total number of samples along with the sum of values and sum of squared values.
getVascularImagingFlags() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVasMode() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVattArray(int, FileInfoMinc) - Method in class gov.nih.mipav.model.file.FileMinc: Gets the attribute array within a variable.
getVattElem(int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Returns the variable attribute located at index in the array.
getVec() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
getVectorNeighborList(int, int, float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Compiles a list of the values neighboring the desired pixel, that are defined in the kernel.
getVencScalingFactor() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVerified() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the verified value.
getVerified() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the verified value.
getVerified() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the verified value.
getVersion() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor that returns the DICOM version of the tag.
getVersion() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getVersion() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getVersion() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
getVersion() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getVersion() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getVersion() - Static method in class gov.nih.mipav.view.MipavUtil: Gets the MIPAV Version number from the about.txt file.
getVersionBytesDescription(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor
getVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
getVersionNumber() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Accessor to the DICOM version number for this tag.
getVertex1() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem
getVertex2() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem
getVertexCopy() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the vertices of a triangle mesh.
getVertexCopyAsVector3f() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Make a copy of the vertices of a triangle mesh.
getVertexData() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
getVertexData(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
getVertexMap() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Access the hash map of vertices.
getVertexNormals() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Get the array of normal vectors at each vertex.
getVertexQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: The number of vertices currently in the table.
GetVertexQuantity(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
getVertexString(Point3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when writing the surface.xml file: Converts the input array of Point3f[] to a String for writing:
GetVertical(int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
getVerticalAnatomicalReference() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVerticalLandmark() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
getVerticalSamplingFactor() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent
getVertices() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
getVertices() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
getVertices() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: Returns a reference to the box vertices:
getVertices(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Called when reading the input surface.xml file: Parses the input string into a an array of Point3f[], representing the mesh vertices:
getVFace(Vector3f[], int[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
getVFace(Vector3f[], int[][], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
getView() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns the view stored in this structure.
getView() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns the view stored in this structure.
getViewableSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: Get the top-most slice.
getViewableTimeSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: Gets the current Time slice which is being viewed.
getViewDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return the viewPanel from parent frame.
getViewDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return the viewPanel from parent frame.
getViewDirection() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Retrieve the current base direction vector for viewing.
getViewDirection() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Returns the view direction vector at the current position on the path.
getViewDirection() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Returns the view direction vector at the current position on the path.
getViewMenuBar() - Method in class gov.nih.mipav.view.ViewJFrameImage
getViewOrientation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Retrieve the current relative orientation transform matrix for viewing which is relative to the current base direction transform for viewing.
getViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Get the view control panel.
getViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Return the image panel.
getViewPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Returns the current position on the path.
getViewPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Returns the current position on the path.
getViewRight() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
getViews() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides current views value.
getViews() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides current views value.
getViews() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides current views value.
getViewToModel() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
getViewUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Returns the view up vector at the current position on the path.
getViewUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Returns the view up vector at the current position on the path.
getVignetteControlDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
getVignettingCorrectionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getVisible() - Method in class gov.nih.mipav.view.JPanelChecklist: Gets the values of which boxes are visible.
getVisible(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: slice slider visible or not.
getVisible(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: slice slider visible or not.
getVisibleLength() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
getVistaParamTextfields() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
getVM(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Accessor that returns the value multiplicity of the tag.
getVMOptionsMaxHeap(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
getVMOptionsStartupFile(String, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
getVOI() - Method in class gov.nih.mipav.model.structures.event.VOIEvent
getVOI() - Method in class gov.nih.mipav.model.structures.event.VOIVectorEvent: returns the reference VOI.
getVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Returns the VOIBase object rendered by this VolumVOI object.
getVOI() - Method in class gov.nih.mipav.view.ViewJComponentFunct: gets the voi associated with this function if it corresponds to a point, otherwise returns null.
getVOI() - Method in class gov.nih.mipav.view.VOIContourNode: Returns this node's user object.
getVOI() - Method in class gov.nih.mipav.view.VOIFrameNode: Returns this node's user object.
getVOI() - Method in class gov.nih.mipav.view.VOIOrientationNode: Returns this node's user object.
getVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Returns a VOILink to a VOI attached to this image.
getVOI_ID() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getVOI_ID() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Deprecated.
getVOIBase() - Method in class gov.nih.mipav.model.file.FileVOI.VOISortItem: DOCUMENT ME!
getVoiceMemoDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getVOICheck() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Get the VOI check box.
getVOIColorButton() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Returns the VOI Color/properties button
getVOIColorIncrement() - Static method in class gov.nih.mipav.view.Preferences: Gets the VOI color increment value.
getVOIDrawColor() - Static method in class gov.nih.mipav.view.Preferences: Gets the VOI draw color.
getVoiFileLocation() - Method in class gov.nih.mipav.view.dialogs.ScriptVOI
getVOIforProcessing(VOI) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
getVOIgroup() - Method in class gov.nih.mipav.view.VOIGroupNode: Returns this node's user object.
getVOIHandler() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getVOIKeys() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets paths to VOI files for this image.
getVOIList() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: gets the selected VOIset
getVOIList() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
getVOIManager() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
getVOIManager() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVOIManager() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getVOIManager() - Method in class gov.nih.mipav.view.ViewJFrameImage
getVOIManager() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
getVOIManager() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
getVOIManager() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
getVOIManager(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Returns the VOIManager at the given position.
getVOIManagerNum() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Returns the number of VOIManagers controlled by this VOIHandler.
getVOIMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Return the menu containing the list VOI commands.
getVoiName() - Method in class gov.nih.mipav.view.dialogs.ScriptVOI
getVOIname() - Method in class gov.nih.mipav.view.VOIOrientationNode: Returns the name of the parent voi
getVOIParentImage(ParsedActionLine) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns the image placeholder variable referenced by an 'OpenVOI' action.
getVOIProperties(VOI) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: DOCUMENT ME!
getVOIRedoButton() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
getVOIs() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Returns the VOI hashtable for this image.
getVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns.
getVOIsCopy() - Method in class gov.nih.mipav.model.structures.ModelImage
getVOISlices() - Method in class gov.nih.mipav.model.structures.VOI: Returns the number of z slices actually containing part of the voi
getVOIState() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
getVOIStatistic(String) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties: Gets the statistic for the whole VOI.
getVOITable() - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Returns a reference to the VOI table being used to run the current script.
getVOIThickness() - Static method in class gov.nih.mipav.view.Preferences: DOCUMENT ME!
getVOIUndoButton() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
getVolOpacity() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Get the opacity histrogram control panel.
getVolOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return volume opacity control Dialog from parent frame.
getVolOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return volume opacity control Dialog from parent frame.
getVolParameters() - Method in class gov.nih.mipav.model.file.FileInfoPARREC: getter for vol parameters
getVolRenderBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return volume render Branch Group.
getVolRenderBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return volume render Branch Group.
getVolRenderOG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return volume render Order Group.
getVolRenderOG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Return volume render Order Group.
getVolsAdded() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the current vols_added value.
getVolsAdded() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the current vols_added value.
getVolsAdded() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the current vols_added value.
getVolume() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Gets the volume of the VOI; return volume defined by the VOI.
getVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Get the burning point volume.
getVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Get the total tumor voxels of the current treatment in mm^3.
getVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Gets the surface volume.
getVolume(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
getVolume(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Return the size of the volume of the given surface.
GetVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the volume of this surface.
getVolumeCheck() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Get the volume display checkbox.
getVolumeDisplayRange() - Method in class gov.nih.mipav.model.structures.VOIBase
getVolumeGPU() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVolumeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getVolumeImageA() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVolumeImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
getVolumeImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVolumeIterationFactors() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Get the factors needed to iterate through the image volume.
getVolumeLimit() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns whether or not iterations are stopped after the present volume is different from the initial volume by volumePercent or more.
getVolumeMask() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Get the current added surface bit mask.
getVolumePercent() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Accessor that returns the percentage difference from the initial volume at which iterations stop.
getVolumePosition(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Translate a point on the x-y tri-image component into image volume space.
getVolumePosition(int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Translate a point on the x-y tri-image component into image volume space.
getVolumeRenderStateFile(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVolumeSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Gets the number of pixels in a volume of the image.
getVolumeSizeX() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get volumeSizeX.
getVolumeSizeY() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get volumeSizeY.
getVolumeSizeZ() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get volumeSizeZ.
getVolumeSlicesPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
getVolumeString(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
GetVolumeString() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Return the volume of this surface.
getVolumeSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Return the TriMesh surface with the given name.
GetVolumeTarget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Texture containing the volume data.
GetVolumeTargetBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return the Buffer containing the volume data, which is stored in the Texture GrapicsImage.
getVolumeTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Return texture, the VolumeTexture member variable.
getVolumeTextureCopy(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Returns the left of right eye copy of the NodeVolumeTextureRender:
getVolumeType() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
getVolumeUnitsOfMeasureStr() - Method in class gov.nih.mipav.model.file.FileInfoBase: Returns the volume unit for the data.
getVolumeVOI() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns the VolumeVOI data member used to draw this contour in the GPU VOlumeRenderer.
getVoxelOrder() - Method in class gov.nih.mipav.model.file.FileInfoTrackVis
getVoxelSizeX() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get voxelSizeX.
getVoxelSizeY() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get voxelSizeY.
getVoxelSizeZ() - Method in class gov.nih.mipav.model.file.FileInfoMicroCat: Accessor to get voxelSizeZ.
getVoxOffset() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI: accessor to the vox offset value.
getVoxOffset() - Method in class gov.nih.mipav.model.file.FileInfoSPM: accessor to the vox offset value.
getVoxUnits() - Method in class gov.nih.mipav.model.file.FileInfoAnalyze: Provides the string for vox-units.
getVoxUnits() - Method in class gov.nih.mipav.model.file.FileInfoSiemensText: Provides the string for vox-units.
getVoxUnits() - Method in class gov.nih.mipav.model.file.FileInfoSPM: provides the string for vox-units.
getVQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: topology member access.
getVQuantity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: input values from the constructor.
getVQuantity() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
getVR(int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Gets the value representation.
getVR(FileDicomKey) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Accessor that returns the value representation of the tag.
getVr_type() - Method in class gov.nih.mipav.model.file.FileDicomTagTable
getVr_type() - Method in class gov.nih.mipav.model.file.FileInfoDicom
getVRImage() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Returns the Volume Ratio Image.
getVRLinkedBuffer() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Gets the communication linkbuffer.
getVRString(int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Returns the string representation of the VR.
getw() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
getWall(AlgorithmNetworkSnake.SnakeInitialiser.Node, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getWallPositions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
getWaterDepthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWatershedID() - Method in class gov.nih.mipav.model.structures.VOI: getWatershedID - accessor that returns the watershedID.
getWaveletImage() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Accessor that returns the image.
getWaveletImages() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools: Accessor that returns the image.
getWbModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWbTypeDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Descriptor
getWbTypeDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDescriptor
getWeak() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem
getWebsite() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata
getWebsite() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata
getWeight() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightItem: DOCUMENT ME!
getWeight() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
getWeight() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem
getWeight() - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Gets the subject's weight.
getWeighted_dx() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
getWeighted_dy() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
getWeightLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
getWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
getWest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getWhere() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut
getWhich() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut
getWhich2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry
getWhichCut() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry
getWhiteBalance1Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getWhiteBalance2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getWhiteBalance2Description() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getWhiteBalanceBiasDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
getWhiteBalanceBlueDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
getWhiteBalanceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getWhiteBalanceDescription(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWhiteBalanceGreenDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWhiteBalanceModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWhiteBalanceRedDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWhiteBalanceSetupDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor
getWhiteBalanceTemperatureDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
getWhitePointX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getWhitePointY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
getWholeImageFlag() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Returns whether the whole image is being examined or just the VOI region.
getWideFocusZoneDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
getWideRangeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor
getWidget() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Returns the Widget scene graph Node.
getWidgets() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Returns the current Widgets.
getWidth() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
getWidth() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase
getWidth() - Method in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
getWidth() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
getWidth() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
getWidth() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
getWidth() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getWidth() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getWidth() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
getWidth() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
getWidth() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getWidth() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the width of the display canvas.
getWidth(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the image width, based on the Patient Coordinates orientation from which the data will be viewed:
getWindow() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
getWindowA() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getWindowB() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getWindowC() - Method in class gov.nih.mipav.model.file.FileInfoInterfile
getWindowCenter() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getWindowCenter() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getWindowCenterWidthExplanation() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getWindowsAuthorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWindowsCommentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWindowsKeywordsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWindowsSubjectDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWindowsTitleDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getWindowValue() - Method in class gov.nih.mipav.view.WindowLevel
getWindowWidth() - Method in class gov.nih.mipav.model.file.FileInfoNIFTI
getWindowWidth() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
getWinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
getWithOverride(String, int) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Returns a parameter from the table, possibly overriding it with a value stored in the global VariableTable.
GetWorld() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
getWorldTimeLocationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
getWritableLength() - Method in class gov.nih.mipav.model.file.FileDicomSQ: Gets the length as read in by the header (possibly undefined).
getWritableLength(boolean) - Method in class gov.nih.mipav.model.file.FileDicomSQItem: Gets the length as read in by the header (possibly undefined).
getWriteOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Returns the necessary options that the user set in this dialog.
getWriterDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
getX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
getX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
getX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getX() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
getX() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getX() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase
getX() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D
getX() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D
getX() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
getX() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getX1Vector() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getX2Vector() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getxAxisLabel() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
getXBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Get the x-bound for the image.
getXBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Get the x-bound for the image.
getXBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the x-bound for the image.
getXBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the x-bound for the image.
getXBound() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The x-dimension of the image.
getXComponent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getXCoords() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Returns an array containing the list of X coordinates for the VOIPoints.
getXDerivativeDirections() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
getXDim() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Return the x-axis movement multipler.
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Return the x-axis movement multipler.
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Return the x-axis movement multipler.
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Return the x-axis movement multipler.
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Return the x-axis movement multipler.
getXFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Return the x-axis movement multipler.
getXLabel() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Gets the label for the x axis.
getXMLLinkedFilename() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Gets the filename for the linked file for the XML header.
getxMod() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getXN() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getXnormalized() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the normalized x coordinate of this Pixel.
getXOpacitySlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the x opacity slider value.
getXOpacitySlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the x opacity slider value.
getxOrg() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the X origin.
getXOrient() - Method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
getxPres() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
getXProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the probe x coordinate.
getXProbePos() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the probe x coordinate.
getXResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getXs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getXs - accessor that gets the array of x coordinates to be plotted.
getXScaleBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the x scale range for brute force registration:
getxSep() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getXSlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the X slider value.
getXSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the X slider value.
getXSliceHairColor() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Get the color for the crosshairPt.X crosshair.
getXSliceHairColor() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the color of the X slice crosshair.
getXSpace() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of X Space text field.
getXSpacing() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the x-spacing for the image.
getXSpacing() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the x-spacing for the image.
getxStart() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getXStart() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of X Start text field.
getXTranslate() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Get the x translation.
getXVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box X selection value.
getXVisibleInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box X negative selection value.
getXYCoords() - Method in class gov.nih.mipav.view.ViewJComponentFunct
getY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
getY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
getY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
getY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
getY() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
getY() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
getY() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase
getY() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D
getY() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D
getY() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
getY() - Method in class gov.nih.mipav.model.algorithms.ODE
getY() - Method in class gov.nih.mipav.model.algorithms.ODEEP
getY() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
getY1Vector() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getY2Vector() - Method in class gov.nih.mipav.view.ViewJComponentGraph
getyAxisLabel() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
getYBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Get the y-bound for the image.
getYBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Get the y-bound for the image.
getYBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the y-bound for the image.
getYBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the y-bound for the image.
getYBound() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The y-dimension of the image.
getYCbCrCoefficientsDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDescriptor
getYCbCrPositioningDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getYCbCrSubsamplingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getYComponent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getYCoords() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Returns an array containing the list of Y coordinates for the VOIPoints.
getYDerivativeDirections() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
getYDim() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
getYears() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
getYearsBefore(Calendar, int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Returns the new date of num years before date.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Return the y-axis movement multipler.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Return the y-axis movement multipler.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Return the y-axis movement multipler.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Return the y-axis movement multipler.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Return the y-axis movement multipler.
getYFactor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Return the y-axis movement multipler.
getYLabel() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Gets the label for the y axis.
getYmean_type(int) - Method in class gov.nih.mipav.model.algorithms.libdt
getyMod() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getYN() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getYnormalized() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the normalized y coordinate of this Pixel.
getYOpacitySlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the y opacity slider value.
getYOpacitySlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the y opacity slider value.
getyOrg() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Returns the Y origin.
getYOrient() - Method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
getyPres() - Method in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
getYProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the probe y coordinate.
getYProbePos() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the probe y coordinate.
getYResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase
getYs() - Method in class gov.nih.mipav.view.ViewJComponentFunct: getYs - accessor that gets the array of y coordinates to be plotted.
getYScaleBruteForce() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Accessor to get the y scale range for brute force registration:
getySep() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getYSlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the y slider value.
getYSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the y slider value.
getYSliceHairColor() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Get the color for the ySlice crosshair.
getYSliceHairColor() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the color of the Y slice crosshair.
getYSpace() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of Y Space text field.
getYSpacing() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Get the y-spacing for the image.
getYSpacing() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the y-spacing for the image.
getyStart() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
getYStart() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of Y Start text field.
getYTranslate() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Get the y translation.
getYVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box Y selection value.
getYVisibleInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box Y negative selection value.
getZAxisFilter() - Method in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
getZBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Get the z-bound for the image.
getZBound() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the z-bound for the image.
getZBound() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The z-dimension of the image.
getZComponent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
getZeroXMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Accessor to return mask indicating zero crossings.
getZeroXMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Accessor to return mask indicating zero crossings.
getZeroXMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Accessor to return mask indicating zero crossings.
getZeroXMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Accessor to return mask indicating zero crossings.
getZeroXMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Accessor to return mask indicating zero crossings.
getZImageSlider() - Method in class gov.nih.mipav.view.ViewControlsImage
getZN() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
getZoneMatchingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor
getZoom() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Get the zoom factor.
getZoom() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getZoomedAxes() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
getZoomFactor() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
getZoomMagnitude(float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Returns the magnitude zoom depending on the zoom mode.
getZoomMagnitudeX(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getZoomMagnitudeY(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
getZoomX() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getZoomX() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the image magnification factor in the screen x-direction.
getZoomX() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Magnification in the x - dimension.
getZoomX() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Magnification in the x - dimension.
getZoomX() - Method in class gov.nih.mipav.view.ViewJComponentBase: Magnification in the x - dimension.
getZoomX() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Magnification in the x - dimension.
getZoomX() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Magnification in the x - dimension.
getZoomY() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
getZoomY() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Returns the image magnification factor in the screen y-direction.
getZoomY() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Magnification in the y - dimension.
getZoomY() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Magnification in the y - dimension.
getZoomY() - Method in class gov.nih.mipav.view.ViewJComponentBase: Magnification in the y - dimension.
getZoomY() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Magnification in the y - dimension.
getZoomY() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Magnification in the y - dimension.
getZOpacitySlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the z opacity slider value.
getZOpacitySlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the z opacity slider value.
getZOrient() - Method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
getZProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the probe z coordinate.
getZProbePos() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the probe z coordinate.
getZSlice() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Get the z slider value.
getZSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Get the z slider value.
getZSliceHairColor() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Get the color for the zSlice crosshair.
getZSliceHairColor() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Gets the color of the Z slice crosshair.
getZSpace() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of Z Space text field.
getZSpacing() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Get the z-spacing for the image.
getZStart() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns value of Z Start text field.
getZVisible() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box Z selection value.
getZVisibleInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return check box Z negative selection value.
gf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
gfstl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
gi - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations
gi - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations2
gi - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations3
gi - Variable in class gov.nih.mipav.model.structures.jama.SVD
gi - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT_REC
gi - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT
gi2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
gi2 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
Gif - gov.nih.mipav.model.file.MetadataExtractor.FileType
GIF - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .gif.
GIF_87A_VERSION_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
GIF_89A_VERSION_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
GifAnimationDescriptor(MetadataExtractor.GifAnimationDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDescriptor
GifAnimationDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDirectory
GifCommentDescriptor(MetadataExtractor.GifCommentDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDescriptor
GifCommentDirectory(MetadataExtractor.StringValue) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDirectory
GifControlDescriptor(MetadataExtractor.GifControlDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifControlDescriptor
GifControlDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory
GifHeaderDescriptor(MetadataExtractor.GifHeaderDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDescriptor
GifHeaderDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory
GifImageDescriptor(MetadataExtractor.GifImageDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifImageDescriptor
GifImageDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory
GifReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GifReader
GifReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.GifReaderTest
GIFTI_HEADER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Gifti header string (for top of xml header).
GiftiAttributes - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
GiftiStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
gImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
gk_cur_jbufs - Variable in class gov.nih.mipav.model.structures.jama.METIS
gk_gkmcoreAdd(METIS.gk_mcore_t, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
gk_gkmcoreCreate() - Method in class gov.nih.mipav.model.structures.jama.METIS
gk_gkmcorePush(METIS.gk_mcore_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
gk_malloc_init() - Method in class gov.nih.mipav.model.structures.jama.METIS
gk_mcore_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
gk_mcoreDestroy(METIS.gk_mcore_t, boolean) - Method in class gov.nih.mipav.model.structures.jama.METIS
gk_mop_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.gk_mop_t
GK_MOPT_CORE - Variable in class gov.nih.mipav.model.structures.jama.METIS
GK_MOPT_HEAP - Variable in class gov.nih.mipav.model.structures.jama.METIS
GK_MOPT_MARK - Variable in class gov.nih.mipav.model.structures.jama.METIS
gkmcore - Variable in class gov.nih.mipav.model.structures.jama.METIS
GKN(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
GKN3(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
gl_height - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
gl_width - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
glassPane - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Pane of glass this listener is tied to.
GlassPaneListener(JDialogCaptureScreen.MyGlassPane) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Creates new listener that captures mouse and mouse motion events and sends them to the glass pane to draw a partial or completed rectangle.
glmax - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Maximum pixel values for the entire dataset.
glmax - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Maximum pixel values for the entire dataset.
glmax - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
glmin - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Minimum pixel values for the entire database.
glmin - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Minimum pixel values for the entire database.
glmin - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
GLOBAL_A - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_A_ORIG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_C - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
global_J_local - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
GLOBAL_K_MEANS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
GLOBAL_K_MEANS - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
GLOBAL_L - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_MEM_USAGE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_OPTIONS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_PERM_C - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_PERM_R - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
GLOBAL_R - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
global_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
GLOBAL_STAT - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
global_state - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_common_struct
global_state - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
GLOBAL_U - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
globalAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
globalAlphaMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
globalAlphaMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
globalAlphaMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
globalCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
globalCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
globalCrc - Variable in class gov.nih.mipav.model.file.CRC
GlobalLU_t() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
globalSaturationMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
globalSaturationMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
globalSaturationMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
globalScaling - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
GlobalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
globalThicknessMultiplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
globalToLocal(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
glp - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
glue(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
glue(FrontEdge, FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
GluIntArray(int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
glyph - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.GlyphLabel
glyph - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
glyph2points - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
GlyphLabel(String, ContourPlot.Glyph, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.GlyphLabel
glyphLabels - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
glyphName() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph
glyphs - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
glyphSize - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
glyphsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: list to hold the glyphs type name
glyphState - Static variable in class gov.nih.mipav.model.file.FileLIFF
GM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
GM - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
GM2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
GM2 - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gm2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gmAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gmAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gmAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gmat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: param by param array If secondAllowed if false, gmat can be used as a singly subscripted array of dimension param by setting all second indices to 0.
gmat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: param by param array If secondAllowed if false, gmat can be used as a singly subscripted array of dimension param by setting all second indices to 0.
gmax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: The new maximum level gmax >= srcMax
gmax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: The new maximum level gmax >= srcMax
gmax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: The new image maximum.
gmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
gmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
gmax - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement
gmAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
gmButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
GMCheckBox - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Gradient Magnitude Check box of the grey scale image.
GMCheckBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Gradient Magnitude Check box of the grey scale image.
gmDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
gmFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
gmFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gmFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gmFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gmFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: gradient magnitude filter.
gmFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
gmFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
gmid - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Gray scale value at which ugray(g) = 1.0.
gmid - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
gmImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
gmImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
gmImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
gmImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
gmImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
gmin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: The new minimum level gmin <= srcMin
gmin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: The new minimum level gmin <= srcMin
gmin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: The new image minimum.
gmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
gmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
gmin - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement
GMM(int, int) - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
GMMSel(double[][], double[][][], GaussianMixtureModelsIncompleteSamples.GMM, double, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
gmTextFile - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
gmThresholdMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Gray Matter maximum threshold :
gmThresholdMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Gray Matter minimum threshold :
gn - Static variable in class gov.nih.mipav.model.algorithms.Cephes
GN4 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
GN8 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
gnavuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
gnavuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
gNb - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
gndok - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
gndok - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
gndunc(boolean, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
gndunc(boolean, int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
gnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: scalar containing norm of the gradient divided by norm of Jacobian.
gnorm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: scalar containing norm of the gradient divided by norm of Jacobian.
goBackButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: DOCUMENT ME!
goButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Go to button.
goButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Go to button.
gOffsetX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 818 gradient offset in x-direction.
gOffsetY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 820 gradient offset in y-direction.
gOffsetZ - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 822 gradient offset in z-direction.
GOn - Variable in class gov.nih.mipav.model.structures.ModelRGB: Flag indicating whether the green channel should be displayed.
good_step_quality - Variable in class gov.nih.mipav.model.algorithms.LsqFit
GOOD_TEST_TERM_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
GoodCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.GoodCostFunction
goodRASFlag - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
GoodTestTerm(int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
goOptimize(float[], VOIContour) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Run the simplex opt algorithm on a polygon (VOI) in a slice of an image.
goToSliceText - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
gov.nih.mipav.model - package gov.nih.mipav.model
gov.nih.mipav.model.algorithms - package gov.nih.mipav.model.algorithms
gov.nih.mipav.model.algorithms.DiffusionTensorImaging - package gov.nih.mipav.model.algorithms.DiffusionTensorImaging
gov.nih.mipav.model.algorithms.filters - package gov.nih.mipav.model.algorithms.filters
gov.nih.mipav.model.algorithms.filters.OpenCL.filters - package gov.nih.mipav.model.algorithms.filters.OpenCL.filters
gov.nih.mipav.model.algorithms.levelset - package gov.nih.mipav.model.algorithms.levelset
gov.nih.mipav.model.algorithms.registration - package gov.nih.mipav.model.algorithms.registration
gov.nih.mipav.model.algorithms.registration.vabra - package gov.nih.mipav.model.algorithms.registration.vabra
gov.nih.mipav.model.algorithms.utilities - package gov.nih.mipav.model.algorithms.utilities
gov.nih.mipav.model.dicomcomm - package gov.nih.mipav.model.dicomcomm
gov.nih.mipav.model.file - package gov.nih.mipav.model.file
gov.nih.mipav.model.file.rawjp2 - package gov.nih.mipav.model.file.rawjp2
gov.nih.mipav.model.provenance - package gov.nih.mipav.model.provenance
gov.nih.mipav.model.provenance.actions - package gov.nih.mipav.model.provenance.actions
gov.nih.mipav.model.scripting - package gov.nih.mipav.model.scripting
gov.nih.mipav.model.scripting.actions - package gov.nih.mipav.model.scripting.actions
gov.nih.mipav.model.scripting.parameters - package gov.nih.mipav.model.scripting.parameters
gov.nih.mipav.model.structures - package gov.nih.mipav.model.structures
gov.nih.mipav.model.structures.event - package gov.nih.mipav.model.structures.event: This package carries the different events and listeners arranged around the structure Objects within MIPAV.
gov.nih.mipav.model.structures.jama - package gov.nih.mipav.model.structures.jama
gov.nih.mipav.model.util - package gov.nih.mipav.model.util
gov.nih.mipav.plugins - package gov.nih.mipav.plugins: Objects in this package hold the basic interface to build external plugins for use with MIPAV.
gov.nih.mipav.util - package gov.nih.mipav.util
gov.nih.mipav.view - package gov.nih.mipav.view: The gov.nih.mipav.view package contains Objects which are displayed on the screen.
gov.nih.mipav.view.components - package gov.nih.mipav.view.components
gov.nih.mipav.view.dialogs - package gov.nih.mipav.view.dialogs
gov.nih.mipav.view.dialogs.reportbug - package gov.nih.mipav.view.dialogs.reportbug
gov.nih.mipav.view.graphVisualization - package gov.nih.mipav.view.graphVisualization
gov.nih.mipav.view.icons - package gov.nih.mipav.view.icons
gov.nih.mipav.view.input.spacenav - package gov.nih.mipav.view.input.spacenav
gov.nih.mipav.view.renderer - package gov.nih.mipav.view.renderer
gov.nih.mipav.view.renderer.flythroughview - package gov.nih.mipav.view.renderer.flythroughview
gov.nih.mipav.view.renderer.J3D - package gov.nih.mipav.view.renderer.J3D
gov.nih.mipav.view.renderer.J3D.model.file - package gov.nih.mipav.view.renderer.J3D.model.file
gov.nih.mipav.view.renderer.J3D.model.structures - package gov.nih.mipav.view.renderer.J3D.model.structures
gov.nih.mipav.view.renderer.J3D.surfaceview - package gov.nih.mipav.view.renderer.J3D.surfaceview
gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview - package gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview
gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview - package gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview
gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview - package gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview
gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview - package gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse - package gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse
gov.nih.mipav.view.renderer.J3D.volumeview - package gov.nih.mipav.view.renderer.J3D.volumeview
gov.nih.mipav.view.renderer.WildMagic - package gov.nih.mipav.view.renderer.WildMagic
gov.nih.mipav.view.renderer.WildMagic.AAM - package gov.nih.mipav.view.renderer.WildMagic.AAM
gov.nih.mipav.view.renderer.WildMagic.BallPivoting - package gov.nih.mipav.view.renderer.WildMagic.BallPivoting
gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM - package gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM
gov.nih.mipav.view.renderer.WildMagic.Decimate - package gov.nih.mipav.view.renderer.WildMagic.Decimate
gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork - package gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
gov.nih.mipav.view.renderer.WildMagic.flythroughview - package gov.nih.mipav.view.renderer.WildMagic.flythroughview
gov.nih.mipav.view.renderer.WildMagic.Interface - package gov.nih.mipav.view.renderer.WildMagic.Interface
gov.nih.mipav.view.renderer.WildMagic.Knees - package gov.nih.mipav.view.renderer.WildMagic.Knees
gov.nih.mipav.view.renderer.WildMagic.Navigation - package gov.nih.mipav.view.renderer.WildMagic.Navigation
gov.nih.mipav.view.renderer.WildMagic.Poisson - package gov.nih.mipav.view.renderer.WildMagic.Poisson
gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine - package gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine
gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry - package gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes - package gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes
gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree - package gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework - package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm - package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm - package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity - package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity
gov.nih.mipav.view.renderer.WildMagic.Render - package gov.nih.mipav.view.renderer.WildMagic.Render
gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer - package gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer
gov.nih.mipav.view.renderer.WildMagic.TBI - package gov.nih.mipav.view.renderer.WildMagic.TBI
gov.nih.mipav.view.renderer.WildMagic.VOI - package gov.nih.mipav.view.renderer.WildMagic.VOI
gov.nih.mipav.view.renderer.WildMagic.WormUntwisting - package gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
GPanel() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame.GPanel
GPC_DIFF - gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op
GPC_EPSILON - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
GPC_INT - gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op
gpc_op() - Constructor for enum gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op
GPC_UNION - gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op
gpc_vertex() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex
gpc_vertex_list() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex_list
GPC_XOR - gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op
gpre - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 400 Graphically prescribed.
GpsDescriptor(MetadataExtractor.GpsDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GpsDescriptor
GpsDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory
gpuCompEnabledCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: GPU computing enabled check box
gpuInfoButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
gpuPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The image panel to hold one Canvas3D.
GPURenderBase - Class in gov.nih.mipav.view.renderer.WildMagic
GPURenderBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Default GPURenderBase constructor.
GPURenderBase(VolumeTriPlanarInterface, Animator, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
gpyr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
GQCANP(double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
GQPHYC(int, double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
gqtstp(double[], double[], double[], int[], double[], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
gr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
GR - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
GR - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
grad - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < size of Gaussian window (in spatial bins)
grad - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.TracingPoint
grad - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.TracingPoint
grad - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.TracingPoint
grad - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.TracingPoint
grad - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.TracingPoint
grad(double[], double[]) - Method in interface gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Function
grad(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
grad(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
grad_calc_count - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
grad_dir_bins - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
grad_dir_quant - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
GRAD_IS_ZERO - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
grad_o - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < GSS gradient data.
grad_thresh_decrease - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
grad_weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
grad_weight - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
grad2D(double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
grad2D(double[][], double) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
grad3D(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
grad3Drec(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
gradAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
gradBvalText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: int to determine which format user selects for gradBval test file
gradCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
gradCreatetable - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
gradFileRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: gradient file option
gradient - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
gradient - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample
gradient - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State
gradient - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
gradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.HornSchunk: Compute the gradient of an image using centered differences
gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the gradient with central differences
gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the gradient with central differences
gradient_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
gradient_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
GRADIENT_ALL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses all the gradient cost functions
GRADIENT_ALL - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
GRADIENT_BASED_FACET_EDGE_DETECTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
GRADIENT_BASED_FACET_EDGE_DETECTION - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
gradient_check_numeric_derivative_relative_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
gradient_check_relative_precision - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
gradient_checker_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
gradient_checking_problem - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
gradient_dir_b - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
gradient_dir_non - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
gradient_dir_src - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
gradient_error_detected() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
gradient_error_detected_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
gradient_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
gradient_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
gradient_is_valid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample
GRADIENT_MAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses the gradient magnitude cost
GRADIENT_MAG - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
gradient_mag_b - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
GRADIENT_MAG_INT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses the gradient magnitude and intensity based cost functions
GRADIENT_MAG_INT - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
GRADIENT_MAG_MED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses the gradient magnitude and medialness cost functions
GRADIENT_MAG_MED - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
gradient_mag_non - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
gradient_mag_src - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
gradient_max_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
gradient_max_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State
gradient_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
gradient_squared_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State
gradient_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
gradient_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
gradient_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
gradient2(double[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
gradient3(double[], double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the 3D gradient with central differences
gradientBasedFacetEdgeDetection() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
gradientButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
GradientChecker(CeresSolver.CostFunction, Vector<CeresSolver.LocalParameterization>, CeresSolver.NumericDiffOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientChecker
GradientCheckerSmokeTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientCheckerTestCorrectnessWithLocalParameterizations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientCheckingCostFunction(CeresSolver.CostFunction, Vector<CeresSolver.LocalParameterization>, CeresSolver.NumericDiffOptions, double, String, CeresSolver.GradientCheckingIterationCallback) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
GradientCheckingCostFunctionResidualsAndJacobiansArePreservedTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientCheckingCostFunctionSmokeTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientCheckingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
GradientCheckingProblemImplProblemDimensionsMatch() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
gradientDirectionThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
gradientDirectionThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
gradientEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
gradientFileBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: browse button
gradientFilePath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This is the full path to the gradient file
gradientFilePathTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: path to gradient file
gradientGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gradientMagAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
gradientMagAlgo - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
gradientMagAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
gradientMagnitude(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Computes the gradient magnitude of the buffer passed in.
gradientMagnitude25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: 2D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gradientMagnitude3D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Computes the gradient magnitude of the buffer passed in.
gradientMagnitude3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: 3D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gradientMagnitude4D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Calls gradientMagnitude3D for each volume in the time series.
gradientMagnitudeCompositeA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
gradientMagnitudeCompositeB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
gradientMagnitudeCompositeOpacityA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
gradientMagnitudeParametersA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
gradientMagnitudeParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
gradientMagnitudeSep25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: 25D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gradientMagnitudeSep25DSlices() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude
gradientMagnitudeSep3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: 3D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
gradientMagSepAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
GradientNeighbors() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors
gradientOrientationNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
gradientOrientationNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
gradientOrientationNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
gradientOrientationNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
gradientPath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: gradient path
GradientProblem(CeresSolver.FirstOrderFunction) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
GradientProblem(CeresSolver.FirstOrderFunction, CeresSolver.LocalParameterization) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
GradientProblemEvaluationWithoutParameterizationAndWithGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientProblemEvaluationWithoutParameterizationOrGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientProblemEvaluationWithParameterizationAndWithGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientProblemEvaluator(CeresSolver.GradientProblem) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
GradientProblemEvalutaionWithParameterizationAndNoGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientProblemSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolver
GradientProblemSolverOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
GradientProblemSolverOptionsToSolverOptions() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
GradientProblemSolverOptionsToSolverOptions(CeresSolver.GradientProblemSolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
GradientProblemSolverSolvesRosenbrockWithDefaultOptions() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GradientProblemSolverStateUpdatingCallback(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverStateUpdatingCallback
GradientProblemSolverSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
GradientProblemTakesOwnershipOfFirstOrderFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
gradients - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gradients - Variable in class gov.nih.mipav.model.file.DTIParameters
gradients - Variable in class gov.nih.mipav.model.file.FileBRUKER
gradients - Variable in class gov.nih.mipav.model.file.FileImageXML
gradients - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
gradients - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
gradientTableCreator() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
GradientToleranceReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
gradientType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
gradientType - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gradientWeight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
gradientWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
gradientWeightText - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
gradIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
gradMag - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gradMagBuf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The gradient magnitude of the slice.
gradMagBuf - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
gradMagRescale_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Model image of the gradient magnitude of image A rescaled to have value in the range [0:255].
gradMagRescale_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Model image of the gradient magnitude of image A rescaled to have value in the range [0:255].
gradMagRescale_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Model image of the gradient magnitude of image B rescaled to have value in the range [0:255].
gradMagRescale_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Model image of the gradient magnitude of image B rescaled to have value in the range [0:255].
gradMagVol - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
gradMatArray - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
gradOPBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
gradOPLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
gradPos - Variable in class gov.nih.mipav.model.file.FilePARREC: bFactorIndex
gradResBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
gradResLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
gradResWOP - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
graph - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
graph - Variable in class gov.nih.mipav.view.graphVisualization.MipavSAXReader
graph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
Graph() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Graph
Graph(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Graph
graph_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.VertexDegreeLessThan
graph_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.VertexTotalOrdering
graph_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
graph_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.VertexTotalOrderingInteger
graph_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
graph_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.graph_t
graph25VOI_CalcInten(boolean, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
graph25VOI_CalcInten(boolean, boolean, float) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Generates and displays a 1D graph of the average or total intensity of 2.5 VOI of 2.5D image (3D).
GraphAddVertexAndEdge() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GraphAddVertexIdempotence() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
graphBounds - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
graphCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
graphCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
GraphDieOnNonExistentVertex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GraphEmptyGraph() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
GRAPHIC_WEIGHTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
GRAPHIC_WEIGHTS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
graphicallyPrescribed - Variable in class gov.nih.mipav.model.file.FileGESigna4X
graphicallyPrescribed - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
graphicsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
graphicsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
graphPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Displays the graph.
graphPanel2 - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
graphPointVOI(VOI, VOIPoint, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
graphSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
graphSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
graphSystem - Variable in class gov.nih.mipav.view.graphVisualization.MipavSAXReader
graphVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
graphVOICurvature(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
grat1(double, double, double, double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
GRAY - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be gray.
GRAY_BR - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be gray, with blue in the first location, red in the last location.
GRAY_LUT - Static variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: Indicates a grayscale LUT.
GRAY_PRESENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
GRAY_PRESENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
gray_rgb_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
gray_rgb_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
GRAY_RGB_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
Gray16 - Static variable in class gov.nih.mipav.model.file.FileCZI: 16 bit unsigned
Gray32 - Static variable in class gov.nih.mipav.model.file.FileCZI: 32 bit integer [planned]
Gray32Float - Static variable in class gov.nih.mipav.model.file.FileCZI: 32 bit IEEE float
Gray64 - Static variable in class gov.nih.mipav.model.file.FileCZI: Double precision floating point [planned]
Gray64ComplexFloat - Static variable in class gov.nih.mipav.model.file.FileCZI: 2 x 4 byte IEEE float, representing the real and imaginary part of a complex number
Gray8 - Static variable in class gov.nih.mipav.model.file.FileCZI: 8 bit unsigned
grayCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
grayImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
grayIndices - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: DOCUMENT ME!
GrayLevelClass(boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: Creates a new GrayLevelClass object.
GrayProfiles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
GrayRainbow - Static variable in class gov.nih.mipav.model.structures.ModelLUT
GRAYSCALE - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
grayscale_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
grayscale_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
GRAYSCALE_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
grayScaleArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
grayScaleArray - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
grayScaleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
grayScaleNumber - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
GRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_BLACK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE_BLACK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE_BLACK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
GRE_BLACK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_FUZZY_CLASS1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE_FUZZY_CLASS1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE_FUZZY_CLASS1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_FUZZY_CLASS3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE_FUZZY_CLASS3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE_FUZZY_CLASS3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_GREY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE_GREY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GRE_GREY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE_GREY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
GRE_GREY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GRE_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GRE_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GRE_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
GRE_SECTION3_DARK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
GRE_SECTION4_HIGH_THRESHOLD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
greater(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
greater(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
greater(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
greater(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
greater(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
greater(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
GREATER_ICOST - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream
greaterEqualCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
greaterEqualThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
greaterEqualThan(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
greaterEqualThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
greaterEqualValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
greaterEqualValue - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
greaterThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
greaterThan(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
greaterThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
greaterThan(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
greCEDImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greCEDImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greCEDImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greCEDImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greCEDImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greCEDImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greedyCluster(Vector<AlgorithmScaleSaliency.sixItems>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
green - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
green - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
green - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Flags to indicate which color channels to process.
green - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Flags indicate which color channel to process.
green - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Flags indicate which color channel to process.
green - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: DOCUMENT ME!
green - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: DOCUMENT ME!
green - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
green - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: The indicator probe's green color.
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Define the green color.
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: The indicator probe's green color.
green - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Border color, red, green, and blue components:
green - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
green - Variable in class gov.nih.mipav.view.ViewJFrameBase: Green channel value of the paint color.
GREEN - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be monochrome-green.
GREEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Green channel.
GREEN - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
GREEN - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
GREEN - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The green channel transfer function.
GREEN - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The green channel transfer function.
GREEN_CHANNEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: GREEN CHANNEL String
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Green channel.
GREEN_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Green channel.
GREEN_WEIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
green1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
green1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
green1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
green2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
green2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
green2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
GreenA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
greenAdjColors - Variable in class gov.nih.mipav.view.ColorWheel: array of r,g,b values after green adj
greenAdjColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: arry of r,g,b after green adj *
greenArray - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
greenArray - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
GreenB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
greenBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The green sphere branch group that branches underneath the entryPointBG, and represents the green sphere.
greenBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
greenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
greenBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
greenBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
greenBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
greenBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
greenBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
greenButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
greenChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
greenChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
greenChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greenCheckbox - Variable in class gov.nih.mipav.view.components.JPanelColorChannels: DOCUMENT ME!
greenCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
greenCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
greenCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to select green image.
greenCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: checkbox for turning on / off the green component of the color look-up table.
greenCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Green channel histogram check box A, B.
greenCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
greenCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Green channel histogram check box A, B.
greenCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
greenGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
greenLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Function that maps the green function of the LUT.
greenLine - Variable in class gov.nih.mipav.model.structures.ModelRGB: Function that maps the green function of the LUT.
greenMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
greenMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
greenMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
greenMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
greenMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
greenMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
greenMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
greenMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
greenNorm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
greenOffset - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
GreenOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
GreenOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
greenRequested - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
greenRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
greenRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
greenSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The geometry group of the green sphere.
greenSphereTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Green sphere transform group that set up the translation.
greenText - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
greenValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Weighting values for the red, green, and blue channels.
greenValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Weighting values for the red, green, and blue channels.
greenValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
greenValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
greenVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
greenWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
greImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
greImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
greImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
greImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
greImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
greImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
greImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
greImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
greImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
greImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
greImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
greImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
greImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
grey_weights(ModelImage, int[], int[][], Vector<Integer>, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
grey_weights_PW(ModelImage, int[][], Vector<Integer>, int, int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
greyBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greyChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: for Grey:.
greyColorMap - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greyGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
greyLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Number of grey levels used if rescaling performed.
greyLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Number of grey levels used if rescaling performed.
greyLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Number of grey levels used if data must be rescaled
greyLevels - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Number of grey levels used if data must be rescaled
greyWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
grid - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
grid - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
grid - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
grid(int, int, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
grid_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
grid_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CubicInterpolator
Grid1D(double[], int, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
Grid1D(int[], int, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
Grid1DOneDataDimension() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid1DOneDataDimensionOutOfBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid1DTwoDataDimensionIntegerDataInterleaved() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid1DTwoDataDimensionIntegerDataStacked() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2D(double[], int, boolean, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
Grid2D(int[], int, boolean, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
Grid2DOneDataDimensionRowMajor() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2DOneDataDimensionRowMajorOutOfBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2DTwoDataDimensionColMajorInterleaved() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2DTwoDataDimensionColMajorStacked() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2DTwoDataDimensionRowMajorInterleaved() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Grid2DTwoDataDimensionRowMajorStacked() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
gridColor - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
gridColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: color for the region in-between the images in the light-box.
gridColor - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: color of grid.
gridColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Color for the region in-between the images in the light-box.
gridColorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
gridColumn - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
gridColumn - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
gridDialog - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: The grid resize dialog
gridGetInSphere(StaticGrid, PointDistanceFunctor, VertTmark, Point3, float, Vector<Vertex>, Vector<Float>, Vector<Point3>) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
gridHeight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
gridHeight - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: grid's height
gridLabelingOn - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: if number/lettering should be displayed for grid boxes.
gridLabelOrientation - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: boolean to determine the orientation: true is x-axis numbered false is x-axis lettered.
gridLines - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes: DOCUMENT ME!
gridlinesCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
gridOptions - Variable in class gov.nih.mipav.view.ViewJFrameImage: Only want one gridoptions dialog per jframeimage.
gridOverlayOn - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Flag to indicate if NEI grid overlay should be displayed.
gridP(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
gridPanel - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Panel that holds the grid (stored as private variable so as to remove/rebuild the grid as needed
gridPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
gridPoints - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gridRow - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: value for the number of rows (number of images along the y-axis) and columns (number of images along the x-axis) in the light-box.
gridRow - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Value for the number of rows (number of images along the y-axis) and columns (number of images along the x-axis) in the light-box.
gridSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
gridsizeL - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
gridsizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
gridSpacing - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: spacing between images in the light-box.
gridSpacing - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Spacing between images in the light-box.
gridSpacingX - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gridSpacingX - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: spacing of the grid (horizontal) in terms of resolution.
gridSpacingY - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gridSpacingY - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: spacing of the grid (vertical) in terms of resolution.
gridSpacingZ - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gridVisited - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
gridWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
gridWidth - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: grid's width
ground_truth_image - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
group - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Represents the DICOM group number.
group - Variable in class gov.nih.mipav.model.dicomcomm.RTCEntry: DOCUMENT ME!
group - Variable in class gov.nih.mipav.model.file.FileDicomTag: Integer group word (in hexadecimal).
group - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
group - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
group - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
group - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
group - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
group - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
Group(String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Group: Creates a new Group object.
GROUP_1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_1_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_1_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_1_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_10 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_10 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_10 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_10_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_10_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_10_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_2_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_2_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_2_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_3_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_3_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_3_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_4_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_4_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_4_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_5_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_5_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_5_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_6 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_6 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_6 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_6_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_6_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_6_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_7 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_7 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_7 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_7_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_7_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_7_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_8 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_8 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_8 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_8_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_8_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_8_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
GROUP_9 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GROUP_9 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
GROUP_9 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_9_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
group_9_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
group_9_endSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
group_to_elements() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
group_to_elements_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
group1 - Variable in class gov.nih.mipav.view.dialogs.JDialogBlankImage: The composed group of radio buttons.
group1 - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
group1 - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
group3_2D_Coding - Variable in class gov.nih.mipav.model.file.FileSVS
group3_2D_Coding - Variable in class gov.nih.mipav.model.file.FileTiff
group3Fillbits - Variable in class gov.nih.mipav.model.file.FileSVS
group3Fillbits - Variable in class gov.nih.mipav.model.file.FileTiff
group3Uncompressed - Variable in class gov.nih.mipav.model.file.FileSVS
group3Uncompressed - Variable in class gov.nih.mipav.model.file.FileTiff
group4Uncompressed - Variable in class gov.nih.mipav.model.file.FileSVS
group4Uncompressed - Variable in class gov.nih.mipav.model.file.FileTiff
groupBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
groupBackgrounds - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
groupChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: group variables.
groupClasses(Problem, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
GroupClassesReturn(int, int[], int[], int[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear.GroupClassesReturn
groupColorMap - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Maps the group word to a displayed color, private tags are not specified
groupCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Combo boxes used for sequence tags
groupCropImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
groupCropImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
groupCropImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
groupDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
GroupElements() - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Object.GroupElements
groupField - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
groupGrowRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
groupID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
groupID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.GroupRef: Attributes.
GroupId(T) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
groupImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Group images and exhaustively train the AAM model.
groupIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: group index.
grouping - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
grouping - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
grouping - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
groupLengthInfo - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary
groupList - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Lists used to display available DICOM tags
groupMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
groupName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
groupNameInfo - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary
groupNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
groupNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
groupNum - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: number for id of VOI
groupNum - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: DOCUMENT ME!
groupObject - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
groupObjects - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
groupRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
groupRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
groupRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Project
GroupRef(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.GroupRef: Creates a new GroupRef object.
groupRefImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
groupRefImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
groupRefImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
groupRefs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: DOCUMENT ME!
groups - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Object: A hash table of the DICOM groups
groups - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
groupSeqText - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Text fields for displaying/entering a group/element tag
GroupSize(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
groupStdDev - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
groupString - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
groupSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
groupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
groupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
groupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
groupText - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Text fields for displaying/entering a group/element tag
groupToElement - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: List of all file's elements for each group of a FileDicomKey set
groupToElementSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: List of all file's elements for each group of a FileDicomKey set
groupVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage: Forms a single VOI structure from all the active VOIs presently loaded in the imageModel.
groupWord - Variable in class gov.nih.mipav.model.file.FileDicom: First number (DICOM group) in ordered pair of numbers that uniquely identifies a data element.
grow() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
grow(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
growButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Button which indicates that a region grow has been initiated / is being adjusted.
growDialog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
growDialog - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Dialog used to control region growing of the paint tool.
growingPlate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
GrowingPlatePattern - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
GrowingPlatePattern() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.GrowingPlatePattern
growInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
growInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
growInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
growInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
growInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
growRegion(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: region growing algorithm.
GROWREGION - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
growTreesInThread(int, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest.growTreesInThread
grpLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Object.GroupElements: Stores length of group.
grx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
gry - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
gry_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
gry_const - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
gry_noise - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
gsBottomHatAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat
gsBottomHatAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Use serialVersionUID for interoperability.
gsBottomHatAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat
gsCloseAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
gsCloseAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
gsCloseAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
gsDilateAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
gsDilateAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
gsDilateAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
gse - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
gsErodeAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
gsErodeAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
gsErodeAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
gsMorphGradAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
gsMorphGradAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
gsMorphGradAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
gsMorphLaplacianAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
gsMorphLaplacianAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
gsMorphLaplacianAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
gsOpenAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
gsOpenAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
gsOpenAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
gsReconAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
gsReconAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
gsReconAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
gss - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
gss - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
GSS_filters() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.GSS_filters
gssarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
gssarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
gsTopHatAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat
gsTopHatAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: Use serialVersionUID for interoperability.
gsTopHatAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat
gsumln(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
gt - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
gt(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is greater than another DoubleDouble value.
Gt(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise greater than.
Gt(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Greater Than - compares a double and a vector.
Gt(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise greater than.
Gt(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Greater Than - compares a vector and a vector.
gTestMode(double, CVODES.NVector, double[], CVODES.UserData) - Method in class gov.nih.mipav.model.algorithms.CVODES: g routine.
gthresh(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
gtol - Variable in class gov.nih.mipav.model.algorithms.Lmmin: gtol is a nonnegative input variable.
gtTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
GtwImag - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
GtwReal - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
gues - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
gues - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
guessCharSet(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter: Attempts to guess the Charset of a string provided as a byte array.
guessGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
guessImageLength(int[]) - Method in class gov.nih.mipav.model.file.FileDicom: Helper method for dicom files that do not specify a valid extents
GUI_BUILDER_OK_ID - Static variable in class gov.nih.mipav.view.dialogs.GuiBuilder
guiBuilder - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
guiBuilder - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
GuiBuilder - Class in gov.nih.mipav.view.dialogs: Provides methods for quickly building panel components.
GuiBuilder(JDialogBase) - Constructor for class gov.nih.mipav.view.dialogs.GuiBuilder
guid - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: Attributes.
guideColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
guidedFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: DOCUMENT ME!
GuidedFilterColor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
GuidedFilterMono() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
guidedGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
guidedImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
guidedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
guides - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
guidField - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
GULF_RESEARCH_AND_DEVELOPMENT - Variable in class gov.nih.mipav.model.algorithms.LsqFit
GULF_RESEARCH_AND_DEVELOPMENT - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
GulfResearchAndDevelopmentFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.GulfResearchAndDevelopmentFunction
gunzip - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
gunzip - Variable in class gov.nih.mipav.model.file.FileNRRD: If true, data has gzip compression.
gv - Variable in class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t
gv - Variable in class gov.nih.mipav.model.structures.jama.METIS.vnbr_t
gVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
gVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
gvfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
gvfBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
gvfBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
gvfBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
gvfImage - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
gvfIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Maximum iterations to generate generalized gradient vector field.
gvfIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Maximum iterations to generate generalized gradient vector field.
gvfIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
gvfIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
GVFitting(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFitting
GVFittingCheck - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GVFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVFittingCostFunction
gvfModel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
gvfName - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
GVfunction(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GVfunction_peak1(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GVfunction_recirculation(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GVRecirculation(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculation
GVRecirculationCheck - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GVRecirculationCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.GVRecirculationCostFunction
GWAVELIFT_NORM_1_1 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
GwImag - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
gWorkItems - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions
GwReal - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
Gx2Data - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the X direction for 2D images;
Gx2Data - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the X direction for 2D images;
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: Storage location of the first derivative of the Gaussian in the X direction.
GxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the X direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Storage location of the second derivative of the Gaussian in the X direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Storage location of the second derivative of the Gaussian in the X direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the XX direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Storage location of the second derivative of the Gaussian in the X direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
GxxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
GxxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the X direction.
GxxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxxData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the X direction for the 3D kernel.
GxxData2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the X direction for the 2D kernel.
GxxxData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxxxData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxxyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxxyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxxzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the XY direction.
GxyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
GxyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxyyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxyzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GxzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the XZ direction.
GxzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GxzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GY - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
GY - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
Gy2Data - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Y direction for 2D images;
Gy2Data - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Y direction for 2D images;
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: Storage location of the first derivative of the Gaussian in the Y direction.
GyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GyData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Y direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Storage location of the second derivative of the Gaussian in the Y direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Storage location of the second derivative of the Gaussian in the Y direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the YY direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Storage location of the second derivative of the Gaussian in the Y direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
GyyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the Y direction.
GyyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GyyData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the Y direction for the 3D kernel.
GyyData2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the Y direction for the 2D kernel.
GyyyData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GyyyData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GyyzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GyzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GyzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the YZ direction.
GyzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GyzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: Storage location of the first derivative of the Gaussian in the Z direction.
GzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GzData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Storage location of the first derivative of the Gaussian in the Z direction.
gzin - Variable in class gov.nih.mipav.model.file.FileNIFTI
GzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Storage location of the second derivative of the Gaussian in the Z direction.
GzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Storage location of the second derivative of the Gaussian in the Z direction.
GzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
GzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Storage location of the second derivative of the Gaussian in the ZZ direction.
GzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Storage location of the second derivative of the Gaussian in the Z direction.
GzzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the Z direction.
GzzData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
GzzData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Storage location of the second derivative of the Gaussian in the Z direction for the 3D kernel.
GzzzData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!

H

h - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
h - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
h - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
h - Variable in class gov.nih.mipav.model.algorithms.ODE
h - Variable in class gov.nih.mipav.model.algorithms.ODEEP
h - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: data height
h - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: data height
h - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
h - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
h - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
h - Variable in class gov.nih.mipav.view.ColorIcon: DOCUMENT ME!
h(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
H - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
H - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
H - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
H - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable
H - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable
H - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Array for internal storage of nonsymmetric Hessenberg form.
H - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
H_BIAS - Variable in class gov.nih.mipav.model.algorithms.CVODES
h_expand - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
h_repeat - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
h_samp_factor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
H_sub_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
h_t0min(TURN_REP, TURN_REP, double, double, double, int, double[], EVENT[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
H0VAL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
H0VLC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
h1 - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
h2v1_merged_upsample(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int) - Method in class gov.nih.mipav.model.file.libjpeg
h2v1_merged_upsample(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int) - Method in class gov.nih.mipav.model.file.libjpeg
H2V1_MERGED_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
h2v1_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, byte[][], int, byte[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
h2v1_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[][], int, short[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
H2V1_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
h2v2_merged_upsample(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][]) - Method in class gov.nih.mipav.model.file.libjpeg
h2v2_merged_upsample(libjpeg.jpeg_decompress_struct, short[][][], int, short[][]) - Method in class gov.nih.mipav.model.file.libjpeg
H2V2_MERGED_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
h2v2_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, byte[][], int, byte[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
h2v2_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[][], int, short[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
H2V2_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
h5File - Variable in class gov.nih.mipav.model.file.FileMincHDF: the file to be read/written
H5Write(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
HAAR - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
HaarTransform - Class in gov.nih.mipav.model.algorithms
HaarTransform() - Constructor for class gov.nih.mipav.model.algorithms.HaarTransform
HaarTransform(ModelImage, ModelImage, ModelImage, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.HaarTransform
Hahn1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Hahn1CostFunction
Hahn1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Hahn1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
HALEN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
HALF - Variable in class gov.nih.mipav.model.algorithms.CVODES
halfBin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Face
halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
halfedge(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge
Halfedge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
HalfEdge() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
halfedge_face(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
halfedge_vertex(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
halfedges() - Method in class gov.nih.mipav.model.algorithms.LSCM.Loop
HalfEdgeTrait() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.HalfEdgeTrait
halfK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
halfK - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
halfK - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
halfK - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: The kernel radius.
halfK - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: The kernel radius.
halfMajor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
halfMajor - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
halfMajor - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
halfMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Matrix with the best transformation divided by half.
halfMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Matrix with the best transformation divided by half.
halfMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix with the best transformation divided by half.
halfMatrixd - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix with the best transformation divided by half.
halfMinor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
halfMinor - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
halfMinor - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
HALFSAMPLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
HALFTONE_HINTS - Static variable in class gov.nih.mipav.model.file.FileSVS
HALFTONE_HINTS - Static variable in class gov.nih.mipav.model.file.FileTiff
halfWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine: DOCUMENT ME!
hAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
hals_so_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
HALS_SO_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
HALSupdt(Matrix, Matrix, Matrix, double, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
HammingDistanceThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
HammingDistanceThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
hammingKernel2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds a hamming kernel in 2 dimensions.
hammingKernel2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds a hamming kernel in 2 dimensions.
hammingKernel3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds a hamming kernel in 3 dimensions.
hammingKernel3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds a hamming kernel in 3 dimensions.
handCursor - Static variable in class gov.nih.mipav.view.MipavUtil: A hand cursor.
handCursor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Hand-shaped mouse cursor.
handleConnectionFromServer(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Establishes an association over a socket from the server (SCP) side.
handleData(int, byte, MetadataExtractor.SequentialByteArrayReader, ArrayList<Object>) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
handleDict(int, byte, MetadataExtractor.SequentialByteArrayReader, ArrayList<Object>) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
handleInt(int, byte, MetadataExtractor.SequentialByteArrayReader, ArrayList<Object>) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
handleIntensityLineBtn3(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Opens the VOIIntensity line drawing popup menu.
HandleInvalidStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
handleLeastSquares() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Method handles transformations for least squares algorithm in the tri-planar frame.
handleMaskPopupMenu(Component, MouseEvent) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Handles the popup menu for the Quick Mask buttons
handleMaskToPaint(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: This method is provided for the user to convert a masked area back to a painted area.
handlePaintToMaskPopupMenu(Component, MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Handles the pop-up menu for Paint to Mask buttons (inside/outside)
handleParserException(ParserException) - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Handle a script parser exception by printing out the location of the problem and stopping script execution.
handlePluginPanelSelection() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method will load a plug-in into the plug-in area of the tri-planar frame.
handlePrintIM(MetadataExtractor.Directory, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
handler - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dec_memory_marker_handler_t: action linked to the marker
handler - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
handler - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
HandleSuccessfulStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
handleTPSpline() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
HandleUnsuccessfulStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
handleZoomPopupMenu(Component, MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: DOCUMENT ME!
HankelKind - Variable in class gov.nih.mipav.model.algorithms.Bessel: real and imaginary outputs Length of arrays passed in must be sequenceNumber Kind of Kankel function = 1 or 2.
HankelKind - Variable in class gov.nih.mipav.model.algorithms.BesselEP: real and imaginary outputs Length of arrays passed in must be sequenceNumber Kind of Kankel function = 1 or 2.
hanning(double, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
hanw - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
haralickBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
haralickBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
haralickBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
haralickFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Haralick feature numbers.
haralickFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
haralickFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
haralickFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
haralickFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
haralickFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
haralickFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: haralick filter.
haralickFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
haralickFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
haralickImagesNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
haralickImagesNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
haralickImagesNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
haralickImagesNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
haralickPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
hard - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
hard(double[][], double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
hard(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
hard(double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
hard(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
hard(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
hard(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
hard(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
hard(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
HARD - gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold
HARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: thresholding estimator.
HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: thresholding estimator.
HARD_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
HARD_ONLY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
HARD_THRESHOLDING - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
HARD_THRESHOLDING - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
hardBIORButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
hardButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
hardButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
hardButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
hardCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
HARDCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality hard copy.
HARDCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality hard copy.
hardDCTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
hardFuzzyBoth - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
hardFuzzyBoth - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
hardFuzzyBoth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
hardFuzzyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
hardInterrupt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
hardNoiseField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
hardNoiseThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
hardNoiseThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
hardNoiseThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
hardOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
hardOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
hardOnly - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
hardOnlyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
hardTransformGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
HarrisAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: DOCUMENT ME!
hartley_multiply(double[], double[], boolean) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
HartleyTransform - Class in gov.nih.mipav.model.algorithms: The MIT License (MIT) Copyright (c) 2015 Eugeniy Sokol Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
HartleyTransform() - Constructor for class gov.nih.mipav.model.algorithms.HartleyTransform
HartleyTransform(int) - Constructor for class gov.nih.mipav.model.algorithms.HartleyTransform
HartleyTransform(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.HartleyTransform
HartleyTransform2 - Class in gov.nih.mipav.model.algorithms: Smithsonian Astrophysical Observatory Submillimeter Receiver Laboratory am transform.c S.
HartleyTransform2() - Constructor for class gov.nih.mipav.model.algorithms.HartleyTransform2
HartleyTransform2(ModelImage, ModelImage, ModelImage, int, int, double, double, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.HartleyTransform2
has_diagonal_appended_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
has_diagonal_reserved_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
has_multiple_scans - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
hasAlias() - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
hasAlpha - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue
hasChanged() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
hasChanged() - Method in interface gov.nih.mipav.model.util.Observable: Test if this object has changed.
hasDataMask(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
HasEdgeRoots(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
hasEqual - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if irregularly sampled data uses numbers == equalValue for missing samples
hasEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
hasErrors() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets a value indicating whether this directory has any error messages.
hasErrors() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Indicates whether any errors were reported during the reading of metadata values.
hasExitAction(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Search the script file for an Exit action (required when running in hidden GUI mode from the command line).
HasFaceRoots(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
HasFFAdjacency() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
hasFollowerIfd() - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
hasFollowerIfd() - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler
hasGreaterEqual - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if irregularly sampled data uses numbers >= greaterEqualValue for missing samples
hasGreaterEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
hash(byte[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
hashCode() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.Edge: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel
hashCode() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.Edge: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair: Define a hash code based on the first and second's hash code
hashCode() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Pair: Define a hash code based on the first and second's hash code
hashCode() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet: Define a hash code based on the first and seconds and third's hash code
hashCode() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey
hashCode() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pair
hashCode() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair: Define a hash code based on the first and second's hash code
hashCode() - Method in class gov.nih.mipav.model.file.FileDicomKey: Returns the unique identifier's hash code.
hashCode() - Method in class gov.nih.mipav.model.file.FileDicomTag: Returns the unique identifier's hash code.
hashCode() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo: Returns the unique identifier's hash code.
hashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
hashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face
hashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
hashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
hashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational
hashCode() - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Edge: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle: Support for hashing into a map of triangles.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Vertex: Support for hashing into a map of vertices.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.Edge: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjEdgeKey: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix.Index: override for Object method used for hashing.
hashCode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.Edge: Support for hashing into a map of edges.
hashCode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair: Define a hash code based on the first and second's hash code
hashCode() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode
hashCode() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
hashCode() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node
hashCoeffs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
hasHeaderBeenRead - Variable in class gov.nih.mipav.model.file.FileDicom: True if the DICOM image header has been read.
hashFunction(int[], int, int, int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
hashKeywordEntries() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
hashRTCentries(Hashtable) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: DOCUMENT ME!
hashVREntries() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator: Builds a hashtable of "TYPE_"+FileDicomTag.getVR.
hasIm_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
hasImageMinMaxDimOrder - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF
hasInfinity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if irregularly sampled data uses infinities for missing samples
hasInfinity - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
hasInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceColor: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceIntensity: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Return indication as to whether or not the input image data has been specified yet.
hasInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Return indication as to whether or not the input image data has been specified yet.
hasInputMap() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: Return indication as to whether or not a map has been defined for mapping input colors to intensity.
hasInputMap() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: Return indication as to whether or not a LUT to use for mapping input intensity values to colors has been specified.
hasInputMap() - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceColor: Return indication as to whether or not a map has been defined for mapping input colors to intensity.
hasInputMap() - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceIntensity: Return indication as to whether or not a LUT to use for mapping input intensity values to colors has been specified.
hasInputMap() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Return indication as to whether or not a map has been defined for mapping input colors to intensity.
hasInputMap() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Return indication as to whether or not a LUT to use for mapping input intensity values to colors has been specified.
hasInstanceOf(SpaceNavigatorListener) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
hasLesserEqual - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if irregularly sampled data uses numbers <= lesserEqualValue for missing samples
hasLesserEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
hasListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI
hasLocalArrayListFlavor(DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
hasMark() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags
hasMoreLinesToParse() - Method in class gov.nih.mipav.model.scripting.ParserEngine: Returns whether there are more lines in the script to be parsed.
hasNaN - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if irregularly sampled data uses NaNs for missing samples
hasNaN - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
hasNewAdj - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: was a new adjusted image created.
hasNewRef - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: was a new reference image created.
hasNext() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator
hasNext() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
hasNormal() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
hasNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Return indication as to whether or not the normal vectors for each voxel in the volume has been specified.
HasNormals(OctNode, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
hasOrientation - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: true if the imageActive has an orientation, false if imageActive is of FileInfoBase.UNKNOWN_ORIENT.
HasParameterBlock(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
hasPerFaceFlags(TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags
hasPerVertexNormal() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
hasPicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
HasResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
hasRGB - Variable in class gov.nih.mipav.model.file.FileICS
HasRoots(double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
HasRoots(double[], double, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
HasRoots(float[], float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
HasRoots(float[], float, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
HasRoots(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
hasSameDimension(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
hasSameDimension(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
hasSelectedPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
hasSelectedPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
hasSerialArrayListFlavor(DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
hasSpaceNavigator() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
hasSpecular() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: Query whether the material has specular properties.
HasSrcShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: Returns true if the source shape has been set.
hasStrokePattern() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Whether this Lines object has a stroke pattern other than 0xffff (completely solid).
hasTagName() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag: Get whether this tag has a name.
hasTagName(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets whether the specified tag is known by the directory and has a name.
hasTagName(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory
hasThreshold1 - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether to use the threshold1 value:.
hasThreshold2 - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether to use the threshold2 value:.
HasTwoV(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
hasV1TargetData() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
hasValidChildren(ViewImageFileFilter) - Method in class gov.nih.mipav.view.ViewFileTreeNode: Checks if this directory ought to be added to the list based on whether it has any children that satisfy the filter.
hasValidTag - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagCodeRenderer
hasValidTag() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagCodeRenderer
HasVertexRef() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
HasVFAdjacency() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
hasXMLLinked() - Method in class gov.nih.mipav.view.ViewOpenFileUI: Indicates whether there is an xml linked image.
HATFLDB - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HATFLDB - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HATFLDB - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
HATFLDC - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HATFLDC - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HATFLDC - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
hausDim(byte[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA: HAUSDIM Returns the Haussdorf fractal dimension of an object represented by a binary image.
HAVE_METIS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
have25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
have25D - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
have3DColor - Variable in class gov.nih.mipav.model.file.FileTiff
have4DColor - Variable in class gov.nih.mipav.model.file.FileTiff
haveAnotherPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
haveAnteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
haveAnteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveBlank - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
haveBleachedBezier - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBleachedCircle - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBleachedCirclePerim3 - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBleachedEllipse - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBleachedPolyline - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBleachedRectangle - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
haveBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
haveBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
haveBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
haveBytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveCentered - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
haveChangedPhotometricTo1 - Variable in class gov.nih.mipav.model.file.FileSVS
haveChangedPhotometricTo1 - Variable in class gov.nih.mipav.model.file.FileTiff
haveColor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: DOCUMENT ME!
haveColor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
haveColor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: DOCUMENT ME!
haveColor - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
haveDataByteOffset - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveDataStartingBlock - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveDcmMeta - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
haveDecayCorrected - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveDetectorHeadNumber - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveDoublePixelData - Variable in class gov.nih.mipav.model.file.FileDicom
haveEndianess - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveEnergyWindowsNumber - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveFileName - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveFiltered - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: whether or not the brightness/contrast filter has been invoked
haveFiltered - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
haveFiltered - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
haveFirstPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
haveFloatPixelData - Variable in class gov.nih.mipav.model.file.FileDicom
haveFloodCorrected - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveFreeRangeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: If true, the freeRangeRThreshold value has been calculated.
haveFreeRangeThreshold - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
haveFreeRangeThreshold - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: true for pixels with calculated freeRangeRThreshold values.
haveGated - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
haveGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
haveGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
haveGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
haveImagesPerEWindow - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveImported - Variable in class gov.nih.mipav.model.file.FileMATLAB
haveInferiorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
haveInferiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
haveInferiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveLeftPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
haveLeftPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveLZWInit - Variable in class gov.nih.mipav.model.file.FileSVS
haveLZWInit - Variable in class gov.nih.mipav.model.file.FileTiff
haveMultiSpectraImage - Variable in class gov.nih.mipav.model.file.FileSVS
haveMultiSpectraImage - Variable in class gov.nih.mipav.model.file.FileTiff
haveNonPointVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
haveNumberFormat - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveNumericArrayCharacter - Variable in class gov.nih.mipav.model.file.FileMATLAB
haveOne - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
haveOne - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
haveOrientation - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
havePeeked - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Flag indicating whether the first byte has been looked at.
havePerm_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
havePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
havePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
havePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
havePosteriorMargin - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
havePosteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
havePosteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveReadACPC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
haveReadOrig - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
haveReconstructed - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
haveReconstructed - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveRed - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
haveRed - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
haveRed - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
haveReferenceFrameNumber - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveResolsT - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveResolsX - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveResolsY - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveResolsZ - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveResolutionUnit - Variable in class gov.nih.mipav.model.file.FileSVS
haveResolutionUnit - Variable in class gov.nih.mipav.model.file.FileTiff
haveRightPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
haveRightPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveRowsPerStrip - Variable in class gov.nih.mipav.model.file.FileSVS
haveRowsPerStrip - Variable in class gov.nih.mipav.model.file.FileTiff
haveSliceThickness - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveStaticStudy - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
haveStaticStudy - Variable in class gov.nih.mipav.model.file.FileInterfile
haveSuperiorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
haveSuperiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
haveSuperiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
haveTDim - Variable in class gov.nih.mipav.model.file.FileInterfile
haveThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
haveThreshold - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
haveThreshold - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
haveTileLength - Variable in class gov.nih.mipav.model.file.FileSVS
haveTileLength - Variable in class gov.nih.mipav.model.file.FileTiff
haveTileOffsets - Variable in class gov.nih.mipav.model.file.FileSVS
haveTileOffsets - Variable in class gov.nih.mipav.model.file.FileTiff
haveTileWidth - Variable in class gov.nih.mipav.model.file.FileSVS
haveTileWidth - Variable in class gov.nih.mipav.model.file.FileTiff
haveTomographic - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
haveTomographic - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveTotalImageNumber - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveTwo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
haveTwo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
haveVOIPoints - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
haveWindowed - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
haveXDim - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveYDim - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveZDim - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
haveZResol - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER: Whether the z resolution is set in the acqp or reco files
haveZResolution - Variable in class gov.nih.mipav.model.file.FileSVS
haveZResolution - Variable in class gov.nih.mipav.model.file.FileTiff
hbAssignCodes(int[], char[], int, int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
hbCreateDecodeTables(int[], int[], int[], char[], int, int, int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
hbMakeCodeLengths(char[], int[], int, int) - Static method in class gov.nih.mipav.model.file.CBZip2OutputStream
Hbuild(double[], int[], int[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hbuild(DoubleDouble[], int[], int[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
HCACTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
HCACTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
HCDCTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
HCDCTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
hcephes_hyp2f1_neg_c_equal_bc(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
hcephes_hyp2f1ra(double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
Hchange(double[], int[], int[], int, int, int, double, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hchange(DoubleDouble[], int[], int[], int, int, int, DoubleDouble, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
hComplexRoots - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
hcustx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
hcusty_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
Hdelete(double[], int[], int[], int, int[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hdelete(DoubleDouble[], int[], int[], int, int[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
HDFNode(Group) - Constructor for class gov.nih.mipav.model.file.FileMincHDF.HDFNode
hDivisions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: number of divisions to make in the height.
Hdown(double[], int[], int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hdown(DoubleDouble[], int[], int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
hdrEXTENSIONS - Static variable in class gov.nih.mipav.model.file.FilePARREC: The extensions of ANALYZE file.
hdrEXTENSIONS - Static variable in class gov.nih.mipav.model.file.FileSpar: The extensions of ANALYZE file.
hdrSize - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Size of header, should be 1000
he_next() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
he_prev() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
he_sym() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
head - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
head - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
head - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
HEAD - gov.nih.mipav.model.structures.jama.SuperLU.stack_end_t
HEAD_ANAT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI typeString head anatomical.
HEAD_FUNC_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI typeString head functional.
head_t() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Cache.head_t
head_t() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache.head_t
HEADER(int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
HEADER(String, String, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
HEADER_SIZE - Static variable in class gov.nih.mipav.model.file.FileAnalyze: The size of the header, always 348 for Analyze images.
headerFile - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
headerFile - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: DOCUMENT ME!
headerFileName - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
headerFileName - Variable in class gov.nih.mipav.model.file.FileInfoOME
headerFileName - Variable in class gov.nih.mipav.model.file.FileInterfile
headerFileName - Variable in class gov.nih.mipav.model.file.FileSPM
HeaderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener
HeaderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener
HeaderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener
HeaderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener
HeaderOp - Static variable in class gov.nih.mipav.model.file.FileLIFF
headerSize - Variable in class gov.nih.mipav.model.file.FileAnalyze: Header size for an Analyze image is 348.
headerSize - Variable in class gov.nih.mipav.model.file.FileMetaImage
headerSize - Variable in class gov.nih.mipav.model.file.FileNIFTI: The size of the NIFTI-2 header must be set to 540 bytes.
headerSize - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
headerSize - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
headerString - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
headerTextField - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB: Use serialVersionUID for interoperability.
headLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
headLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
headLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
headMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
headMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
headMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
headMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
headMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
headMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
HEAP - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
heap_relax_snode(int, int[], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
HeapNode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue.HeapNode
HeapNode(int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue.HeapNode
HeapPointerN - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
HeapRecord() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator.HeapRecord: Creates a new HeapRecord object.
HeapUpdate(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
heartRate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 224 cardiac heart rate (beats per minute).
heatBurn - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Heat burning point reference that represents the thermal probe ablation type.
HEATBURN - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Define the heat burn type value.
Heaviside(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
HEcreate(delaunay.Edge, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
hed_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
hedCNNMap() - Method in class gov.nih.mipav.view.ViewJFrameImage
Heif - gov.nih.mipav.model.file.MetadataExtractor.FileType
height - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: DOCUMENT ME!
height - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
height - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
height - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
height - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
height - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: width and height of this image
height - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator
height - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
height - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Image width
height - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceOctaveGeometry: < Width (number of pixels)
height - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
height - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
height - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlPgmImage: < image width.
height - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < image width.
height - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
height - Variable in class gov.nih.mipav.model.file.FileGESigna4X
height - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
height - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 12 - height of image.
height - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
height - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
height - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
height - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
height - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
height - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
height - Variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream: Image height
height - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane: Dimensions of rectangle to draw.
height - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
height - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
height - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
height - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
height - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
height - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
Height() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Used by AAM appearance model to get dimension
Height() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Shape height
Height() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
height_in_blocks - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
heightButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Buttons for width, height values
heightDivisions - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
heightField - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
heightField - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
heightField - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
heightRange - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Scale the height of the vertice - typically relative the image size.
heightResFactor - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Storage for correction parameters where datasets have non isotropic values.
heightResFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Storage for correction parameters where datasets have non isotropic values.
heightResFactor - Variable in class gov.nih.mipav.view.ViewJFrameImage: Storage for correction parameters where datasets have non isotropic values.
heightResFactor - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Storage for correction parameters where datasets have non isotropic values.
heightText - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Text fields for zoom box
HELICAL_VALLEY - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HELICAL_VALLEY - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HELICAL_VALLEY - Variable in class gov.nih.mipav.model.algorithms.NESolve
HELICAL_VALLEY - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
helicalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection
helicalCorrection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
HelicalValleyFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.HelicalValleyFunction
help - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument: Help for using a command.
help - Variable in enum gov.nih.mipav.view.Argument.StaticArgument: Help for using a command.
Help - gov.nih.mipav.view.Argument.StaticArgument
HELP - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Displays help this dialog
help1 - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
help2 - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
help3 - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
help4 - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
HelpAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction
helpBroker - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
helpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Help button is used on most dialogs.
helpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
helpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Displays Stats dialog help
helpButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Help button is used on most dialogs.
helpDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
helpMenu - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
helpMenu - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
helpPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
helpPluginSearch(File, String) - Static method in class gov.nih.mipav.plugins.PluginUtil
helpPluginSearch(File, String) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
hematocrit - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
HEMOptions(int, libdt.DytexRegOptions, double, libdt.Ymean_type, libdt.Verbose_mode) - Constructor for class gov.nih.mipav.model.algorithms.libdt.HEMOptions
HEPTIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Heptic lagrangian interpolation.
HEPTIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Heptic lagrangian interpolation.
hepticLagrangian2D(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: 2D heptic Lagrangian function.
hepticLagrangian2DC(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: 2D heptic Lagrangian function for color.
hepticLagrangian3D(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: 3D heptic Lagrangian function.
hepticLagrangian3DC(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: 3D heptic Lagrangian function for color (3 channel images).
hermite(int, double) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Factor to include when calculating derivatives.
hermite(int, double) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Factor to include when calculating derivatives.
hermiteContent - Variable in class gov.nih.mipav.model.algorithms.CVODES.DtpntMemRec
HermiteDataMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.HermiteDataMemRec
hess() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
hess() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
hess00 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess01 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess02 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess10 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess11 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess12 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess20 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess21 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hess22 - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
hessian_blkdiag(Matrix, Matrix, int, boolean[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
hessian_times_gradient(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
hessian_times_gradient2(double[], double[][], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
hessian2d(double[][], double[][], double[][], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
hessian2D(float[], int[], float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Convolves the source image at the point (x,y,z) with the hessian of the gaussian function.
hessian2D(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Convolves the source image at the point (x,y) with the hessian of the gaussian function.
hessian3D(double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
hessian3D(float[], int[], float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Convolves the source image at the point (x,y,z) with the hessian of the gaussian function.
hessian3D(float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Convolves the source image at the point (x,y,z) with the hessian of the gaussian function.
hessianAlgo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
hessianAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
HESTENES_STIEFEL - gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType
heuristicParametersPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
heuristicParametersPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
hex(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
Hf - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
Hf - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
hFOVTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
hh - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream.StackElem
hhA - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
hi - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Information contained in the codestream's headers
hi - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Information contained in the codestream's headers
hi - Variable in class gov.nih.mipav.util.DoubleDouble: The high-order component of the double-double precision value.
hidden - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
hidden - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
hidden - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
hidden - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
hidden - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
hiddenLayerLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
hiddenLayers - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
hiddenTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
hide() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Hide only the progress bar and the percentage text
hide(boolean) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text: Hides or unhides this Text object, i.e. sets the ContourPlot.Text.isHidden() field value.
Hide - gov.nih.mipav.view.Argument.InstanceArgument
hideBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Makes the box frame invisible.
hideBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Makes the box frame invisible.
hideBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Makes the box frame invisible.
hideClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on arbitrary clipping plane slice.
hideClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the static clipping plane box frame.
hideClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the static inverset clipping plane box frame.
hideClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice x.
hideClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice -x.
hideClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice y.
hideClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice -y.
hideClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice z.
hideClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Hides the slice frame on clipping plane slice -z.
hideLabel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: The associated label to hide/show the bar
hideList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List to determine which progress bar to hide/show
hideMenus() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
HIERARCHICAL_GROUPING_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
HIERARCHICAL_GROUPING_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
hierarchicalInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
hifiPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
hifiSpec - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
high - Variable in class gov.nih.mipav.model.file.FileInfoCZI
HIGH - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Flag indicating high priority transfer.
HIGH_SPEEDUP - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel
high0Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high0TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high1TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high2TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high3Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high3TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high4Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high4TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high5Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high5TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high6Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
high6TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
highBit - Variable in class gov.nih.mipav.model.file.FileInfoDicom
highBit - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
highBit - Variable in class gov.nih.mipav.model.file.FileRaw
highBit - Variable in class gov.nih.mipav.model.file.FileRawChunk
highBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
highBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
highBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
highestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestRegenerationLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestRegenerationLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestRegenerationLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestRegenerationNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestRegenerationText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
highestRegenerationText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
highestRegenerationText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
highestX - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
highestY - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
highestZ - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
highGain - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
highGain - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
highGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
highlight() - Method in class gov.nih.mipav.view.JPanelFileSelection: gets the focus on the textfield and selects all text there.
highlighter - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Operator to provide listener access... could be done by /this/
highlighter - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Operator to provide listener access... could be done by /this/
highlighter - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Operator to provide listener access... could be done by /this/
highlightTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
highPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
highPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
highPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
highPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
highPass - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
HIGHPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
HIGHPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
HIGHPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
HIGHPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
HIGHPASS - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
HIGHPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
HIGHPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
HIGHPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: A highpass filter will be applied to the source image
HIGHPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
HIGHPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
highRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
highRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
highSpeedUpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
highThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection
highThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection
highTruncated - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
highTruncated - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
highTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
highValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: DOCUMENT ME!
highX - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highX() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highXmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
highY - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highY() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highYmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
highZ - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highZ() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
highZmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
hiIdx(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
hindex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
hinge_conjugate_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge_dca_update - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge_loss_derivative - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge2_conjugate_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge2_dca_update - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge2_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
hinge2_loss_derivative - Variable in class gov.nih.mipav.model.algorithms.SVM
Hinsert(double[], int[], int[], int[], int, double, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hinsert(DoubleDouble[], int[], int[], int[], int, DoubleDouble, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
HIOLD - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
hist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
hist - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 134 - 61 bytes Patient history.
hist - Variable in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: MoelHistogram object
hIST - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
Hist() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Hist
Hist(CDVector, double, double, CDVector, int, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Calculates the histogram of a vector within [min;max] with optional nomalization.
HIST_C0_BITS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_C0_ELEMS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_C1_BITS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_C1_ELEMS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_C2_BITS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_C2_ELEMS - Static variable in class gov.nih.mipav.model.file.libjpeg
HIST_NUMEL - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
hist_un0 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
hist_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
hist_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
hist_zero(SIFT3D.Hist) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
histAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
histFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
histMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
histoBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: int array of histogram values
histoBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: DOCUMENT ME!
histoBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: int array of histogram values.
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
histoEqual(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
histOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
histoForceUBYTE - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
histogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: (cumulative) histogram.
histogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Reference to the histogram storage object.
histogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Reference to the histogram storage object.
histogram - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
histogram - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
histogram - Variable in class gov.nih.mipav.view.JPanelHistogram: red, green and blue histograms:
histogram - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The image histogram.
histogram - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The image histogram.
histogram - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: Model histogram.
histogram2DimAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Instance of AlgorithmHistogram2Dim.
Histogram3D(float[], int, int[], int[], int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
Histogram3D(float[], int, int, int[], int[][], int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
histogramA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Histogram reference for image A.
histogramA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Histogram reference for image A.
histogramA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Model histogram A.
histogramA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
histogramABlue - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageA histogram of the Blue channel.
histogramABlue - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Blue channel.
histogramABlue - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramAGreen - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageA histogram of the Green channel.
histogramAGreen - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Green channel.
histogramAGreen - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramAnalysis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Analyze the histogram of the 10-bit binned 3D MRI.
histogramAnalysis() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Analyze the histogram of the 10-bit binned 3D MRI.
histogramAnalysis(int[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Analyze the histogram of the 10-bit binned 3D MRI.
histogramARed - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageA histogram of the Red channel.
histogramARed - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Red channel.
histogramARed - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramAvailable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Number of pixels available for histogram formation.
histogramB - Variable in class gov.nih.mipav.view.JPanelHistogram: red, green and blue histograms:
histogramB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Histogram reference for image B.
histogramB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Histogram reference for image B.
histogramB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Model histogram B.
histogramB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
histogramBBlue - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageB histogram, the Blue channel.
histogramBBlue - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram, the Blue channel.
histogramBBlue - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramBGreen - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageB histogram, the Green channel.
histogramBGreen - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram, the Green channel.
histogramBGreen - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramBins - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
histogramBins - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
histogramBRed - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

imageB histogram of the Red channel.
histogramBRed - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram of the Red channel.
histogramBRed - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histogramBuffer - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
histogramBuffer - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
histogramFrameVector - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
histogramG - Variable in class gov.nih.mipav.view.JPanelHistogram: red, green and blue histograms:
histogramGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Histogram reference for imageA GM.
histogramGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Histogram reference for imageA GM.
histogramGM_ABlue - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Blue channel.
histogramGM_AGreen - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Green channel.
histogramGM_ARed - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageA histogram of the Red channel.
histogramGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Histogram reference for imageB GM.
histogramGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Histogram reference for imageB GM.
histogramGM_BBlue - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram, the Blue channel.
histogramGM_BGreen - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram, the Green channel.
histogramGM_BRed - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

imageB histogram of the Red channel.
histogramLUT(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

Makes a histogram LUT by calling ViewJFrameHistoLUT.
histogramLUT(boolean, boolean) - Method in class gov.nih.mipav.view.JFrameHistogram: Creates the user interface for LUT changes.
histogramLUT(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.JFrameHistogram
histogramMax - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
histogramMax - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
histogramMaxLog - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
histogramMaxLog - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
HistogramOfOrientedGradients - Class in gov.nih.mipav.model.algorithms: Copyright (C) 2007-11, Andrea Vedaldi and Brian Fulkerson Copyright (C) 2012-13, The VLFeat Team All rights reserved.
HistogramOfOrientedGradients() - Constructor for class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients
HistogramOfOrientedGradients(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients
HistogramOfOrientedGradients.tImage - Class in gov.nih.mipav.model.algorithms
HistogramOfOrientedGradients.VlHog - Class in gov.nih.mipav.model.algorithms
HistogramOfOrientedGradients.VlHogVariant - Enum in gov.nih.mipav.model.algorithms
histogramPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Panel containing the 2D Histogram display canvas:
histogramPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
histogramParent - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The container of this histogram component.
histogramPresent - Variable in class gov.nih.mipav.model.file.FileGESigna4X
histogramPresent - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
histogramThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
histogramThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
histoLUTPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panel for the surface renderer.
HistoLUTParent - Interface in gov.nih.mipav.view: Common interface for swing containers which hold a HistoLUT component so that the image frames and thresholding text areas can be updated correctly.
histoLUTType - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The type of histogram component to show.
histomap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: the scaled histogram.
histoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT
histoPanel - Variable in class gov.nih.mipav.view.JPanelHistogram: histogram panel interface.
histoPanelA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Panel containing the histogram and lut components for image A.
histoPanelA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

The panel containing the RGB histogram component.
histoPanelA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histoPanelA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
histoPanelB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Panel containing the histogram and lut components for image B.
histoPanelB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

The panel containing the RGB histogram component.
histoPanelB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
histoPanelB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
history - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
history - Variable in class gov.nih.mipav.model.file.FileGESigna4X
history - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
history - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
history - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
history - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: The image history.
historyInfo - Variable in class gov.nih.mipav.model.file.FileInfoVista: history info
historyNoteString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
historyNumber - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
hists - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor
histSum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Sum of contents of hisotogram bins.
HISUB - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
HITES - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
hiThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Lower and upper threshold values used in the generation of the edge map.
hiThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
HIVAL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
HIVLC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
hk - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: Input modulus
hkey_un0 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
hkey_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
hkey_un0 - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
HL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
hlA - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
HLACTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
HLACTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
HLag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
HLB_FACTOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
HLDCTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
HLDCTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
hlim_nl2sno - Variable in class gov.nih.mipav.model.algorithms.NL2sol
hlist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
HMax - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
HMax - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
HMAX_INV_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.CVODES
hmflip(int[][], int[], int[], int[], int[][], int, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
hmin - Variable in class gov.nih.mipav.model.structures.HQueue: DOCUMENT ME!
HMIN_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.CVODES
hminiass(int[][], int[], int[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
hminired(int[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
hmodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
hmreduce(int[][], int[], int[], int[], int[], Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
hmult - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
hmult - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
HOCK1 - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HOCK1 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HOCK1 - Variable in class gov.nih.mipav.model.algorithms.NESolve
HOCK1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
HOCK21_MODIFIED - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HOCK21_MODIFIED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HOCK21_MODIFIED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
HOCK25 - Variable in class gov.nih.mipav.model.algorithms.Lmmin
HOCK25 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HOCK25 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
HOCK25 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
HOCK3 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HOCK3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
HOCK4 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
HOCK4 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
hog - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
hogHeight - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
hogNorm - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
hogWidth - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
hold - Variable in class gov.nih.mipav.model.algorithms.ODE
hold - Variable in class gov.nih.mipav.model.algorithms.ODEEP
holder - Variable in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: the provenance holder to read information into
holdout - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
holdout - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
holdout - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
hole - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
holes - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
holes - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
holes_small - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
holes_small - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
holesAndSmallCircularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
holesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
holesPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
holesPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
holesPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
holesPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
holesPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
HolesPattern - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
HolesPattern() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern
HolesPatternTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
HolesPatternTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPatternTest
hom - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset: < Data point dimension.
homBuffer - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset: < Homogeneous kernel map (optional).
homDimension - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset: < Homogeneous kernel map buffer.
homeButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
HomeDir - gov.nih.mipav.view.Argument.StaticArgument
homogeneity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate homogeneity, also called the Inverse Difference Moment of Order 2 Sum over i,j of Probability(i,j)/(1 + (i-j)*(i-j)).
homogeneity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate homogeneity, also called the Inverse Difference Moment of Order 2 Sum over i,j of Probability(i,j)/(1 + (i-j)*(i-j)).
homogeneity - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
homogeneity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
homogeneityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
homogeneityCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
HomogeneousVectorParameterization(int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
HomogeneousVectorParameterizationAwayFromZeroTest1() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationAwayFromZeroTest2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationAwayFromZeroTest3() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationAwayFromZeroTest4() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationAwayFromZeroTest5() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationHelper(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationNearZeroTest1() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationNearZeroTest2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HomogeneousVectorParameterizationZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Homology(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Homology
HOMOMORPHIC - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
HOMOMORPHIC - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
horizonMode() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Resets mode to linear horizontal and shows component.
HORIZONTAL - Static variable in class gov.nih.mipav.view.ViewJComponentLUT: Create horizontal LUT.
HORIZONTAL - Static variable in class gov.nih.mipav.view.ViewJComponentLUTTable: Create horizontal LUT.
horizontalFOVString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: horizontal FOV
horizontalGradient - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
horizontalLandmark - Variable in class gov.nih.mipav.model.file.FileGESigna4X
horizontalLandmark - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
horizontalLineComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
horizontalLineEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
horizontalSpacing - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
horizontalTalGridPts - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: DOCUMENT ME!
horn_schunck_optical_flow(double[], double[], double[], double[], int, int, double, int, double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.HornSchunk: Horn & Schunck method for optical flow estimation at a single scale
horn_schunck_pyramidal(double[], double[], double[], double[], int, int, double, int, double, int, double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.HornSchunk: Procedure to handle the pyramidal approach.
HornSchunk - Class in gov.nih.mipav.model.algorithms
HornSchunk(ModelImage, ModelImage, ModelImage, ModelImage, double, int, double, int, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.HornSchunk
HornSchunk(ModelImage, ModelImage, ModelImage, ModelImage, int, double) - Constructor for class gov.nih.mipav.model.algorithms.HornSchunk
HORZ_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: horizontal (2D only).
HORZ_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: horizontal (2D only).
hospitalName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
hospitalName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
hospName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 10 - 33 characters hospital name.
HOST_COMPUTER - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
HOST_COMPUTER - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
hostComputer - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
hostComputer - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
HostImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Host image (if any).
hostName - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: the machine host name
HotGreen - Static variable in class gov.nih.mipav.model.structures.ModelLUT
HotIron - Static variable in class gov.nih.mipav.model.structures.ModelLUT
HotMetal - Static variable in class gov.nih.mipav.model.structures.ModelLUT
HOTMETAL - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be hotmetal.
hotspot - Variable in class gov.nih.mipav.view.CheckTreeManager
houghImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine
hour - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
hourCheckBox - Variable in class gov.nih.mipav.view.JPanelEditTime: permits whether or not to set this field.
hourComboBox - Variable in class gov.nih.mipav.view.JPanelEditTime: value to add to this time field.
HOURS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement hours.
HOURS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement hours.
HOURS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - hours.
HouseholderTestHelper(double[], String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorLastElementZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorNearZeroNegative() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorNearZeroPositive() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorNonZeroNegative() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorNonZeroPositive() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorNonZeroPositive_Size4() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorZeroNegative() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
HouseholderVectorZeroPositive() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
hpaccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hpderiv(double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hpevalinv(double[][], SchwarzChristoffelMapping.scmap, double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hpinvmap(double[][], double[][], double[][], double[], double[][], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hplmap(SchwarzChristoffelMapping.polygon, double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hplot(SchwarzChristoffelMapping.scmap, double[], double[], int, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hpmap(double[][], double[][], double[][], double[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
hpointerM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
hpparam(double[][], double[], double[][], double[][], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hppfun(double[], int, double[], double[], int[], int[], boolean[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
hpplot(double[][], double[], double[][], double[], double[], double[], int, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
hpquad(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
hprod(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
hprot_MH - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: error protection method for MH (0,1,16,32,37-128)
hprot_TPH - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: error protection methods for TPHs (0,1,16,32,37-128)
hprot_TPH_tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: tile number of header protection specification (>=0)
hpsolb(int, double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
hqr2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
HQueue - Class in gov.nih.mipav.model.structures: This class is used specifically for the watershed algorithm.
HQueue(float, float, int, int) - Constructor for class gov.nih.mipav.model.structures.HQueue: Hierarcial Queue - constructor.
HQueue(float, float, int, int[]) - Constructor for class gov.nih.mipav.model.structures.HQueue: Hierarcial Queue - constructor.
hRealRoots - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
hRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal
hRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Include
hRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal
hrf_estim(double[], Vector<Double>, double[], double[], double, double, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
hrf_fit_err(double, double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
hs - Static variable in class gov.nih.mipav.view.MipavUtil: Displays the Java Help dialog indexed directly to the section identified by the ID passed in.
hs(double[], double[], double[], double[], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
hs(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
hs_iteration(double[], double[], double[], double[], double[], int, int, double) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
hsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
hsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
hSampFactor - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Horizontal sample factor.
hsb - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
HSBAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: DOCUMENT ME!
ht - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
ht_filtering_hadamard(double[][][], double, double, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
ht1 - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
htAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
htAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
htColumnClass - Variable in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
htComplexRoots - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HTML_FORMAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogText: Specifis the output display of the text-box to be formatted using basic HTML rules, as defined by MIME-format "text/html".
htRealRoots - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HtwImag - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HtwReal - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HUB_FACTOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
HuberLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
hue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
hue - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
Hue1 - Static variable in class gov.nih.mipav.model.structures.ModelLUT
Hue2 - Static variable in class gov.nih.mipav.model.structures.ModelLUT
huff_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
HUFF_LOOKAHEAD - Static variable in class gov.nih.mipav.model.file.libjpeg
HUFFCODE - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
HUFFCODE - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
huffDecode(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: Returns the appropriate value after reading 8 bits and interpreting the Huffman code.
HuffmanTable(int, int, byte[], byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable
HuffmanTableClass() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
HuffmanTablesDescriptor(MetadataExtractor.HuffmanTablesDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDescriptor
HuffmanTablesDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDescriptorTest
HuffmanTablesDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory
HuffmanTablesDirectoryTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest
HUFFSIZE - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
HUFFSIZE - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
HuffTable(byte[], int) - Constructor for class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: Creates a new table with the image and the index where we stopped reading the image so far.
huffval - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Read in DHT header.
huffval - Variable in class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL
HUFFVAL - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
HUFFVAL - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
huge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
huge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
huge - Variable in class gov.nih.mipav.model.algorithms.NL2sol
hullArea - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
humidity - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
HUNDRED - Variable in class gov.nih.mipav.model.algorithms.CVODES
hungarian(int[], int[], int[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Hup(double[], int[], int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Hup(DoubleDouble[], int[], int[], int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
hurstAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
hurstAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
hurstAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
hurstAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
hurstFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
hurstFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
hurstFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
hurstFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Hurst index.
hurstFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
hurstFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
hurstImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
hurstImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
hurstImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
Hv(double[], double[]) - Method in interface gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Function
Hv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
Hv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
HwImag - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HwReal - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
HX - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable
HX - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable
hy1f1a(double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
hy1f1p(double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
HYBRD(int, int, double[], double[], double, int, int, int, double, double[], int, double, int, int[], int[], double[][], int, double[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
hyp2f0(double, double, double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
hyp2f1(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
HYP2F1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
hyper - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
hyperbolaRangeTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
hyperbolaRangeTolerance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Maximum percent by which perimiter pixels can deviate from the hyperbola equation
hyperg(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
HYPERG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Hypergeometric - Class in gov.nih.mipav.model.algorithms: The function 2F1(a,b,c,x) is the hypergeometric function or Gauss's hypergeometric function.
Hypergeometric() - Constructor for class gov.nih.mipav.model.algorithms.Hypergeometric
Hypergeometric(double, double, double, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Hypergeometric
Hypergeometric(double, double, double, double, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Hypergeometric
hyperparams() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
hyperrect_create(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
hyperrect_dist_sq(KDTree.kdhyperrect, double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
hyperrect_duplicate(KDTree.kdhyperrect) - Method in class gov.nih.mipav.model.algorithms.KDTree
hyperrect_extend(KDTree.kdhyperrect, double[]) - Static method in class gov.nih.mipav.model.algorithms.KDTree
hyperrect_free(KDTree.kdhyperrect) - Static method in class gov.nih.mipav.model.algorithms.KDTree
hyperstack - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
hyperstack - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
hyperStack - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
hyperstackColormap - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
hyperstackColormap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
hyperstackColormap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
hypot(double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Calculates sqrt(x*x + y*y) which is the hypotenuse length given catheti x and y.
hypot(double, double) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
hypot(double, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
hypot(double, double) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the hypotenuse equal to the sqrt(a^2 + b^2) without under/overflow
hys2f1(double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
HYST_LOW_CUT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
hysteresisHighConfidenceText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hysteresisHighRankText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hysteresisLowConfidenceText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hysteresisLowRankText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hystTypeHigh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
hystTypeHigh - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hystTypeLow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
hystTypeLow - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
hyt2f1(double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
HZ - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement hertz.
HZ - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement hertz.
HZ_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - hertz.

I

i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
i - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
i - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
i - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction3
i - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
i - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
i - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
i - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
i - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.doublecomplex
i - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
i - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
i - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
i - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
i - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
I - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
I - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.P
I - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
I - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: True if data is present at a point, false if data is missing at a point
I - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
I - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
I_AllocClassData(AlgorithmGaussianMixtureModelEM.SigSet, AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_DBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
I_DeallocClassData(AlgorithmGaussianMixtureModelEM.SigSet, AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_DeallocClassSig(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_DeallocSigSet(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_DeallocSubSig(AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_GetClassTitle(AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_GetSigTitle(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_InitSigSet(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_NewClassSig(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_NewSubSig(AlgorithmGaussianMixtureModelEM.SigSet, AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_ReadSigSet(RandomAccessFile, AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_SetClassTitle(AlgorithmGaussianMixtureModelEM.ClassSig, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_SetSigTitle(AlgorithmGaussianMixtureModelEM.SigSet, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_SigSetNBands(AlgorithmGaussianMixtureModelEM.SigSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_WriteSigSet(RandomAccessFile, AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
I_ZBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
I1(double[][][], int, double, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
I1(double[][], int, int, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
i2 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
I2(double[][][], int, int, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
I2(double[][], int, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
I2RUBFACTOR(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
I3(double[][][], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
i4_modp(int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4_power(int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4_sign(int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4_swap(int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4_wrap(int, int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4col_compare(int, int, int[], int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4col_sort_a(int, int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4col_sorted_unique_count(int, int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4col_swap(int, int, int[], int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4mat_transpose_print(int, int, int[], char[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4mat_transpose_print_some(int, int, int[], int, int, int, int, char[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_heap_d(int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_indicator_new(int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_print(int, int[], char[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_reverse(int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_sort_heap_a(int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec_sorted_unique(int, int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec2_compare(int, int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec2_sort_a(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i4vec2_sorted_unique(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
i99999_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
i99999_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
iagcwdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: DOCUMENT ME!
ibase - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
ibdAlgor - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The MaximumLikelihood Blind Deconvolution algorithm:
IBNDS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
IBoxToBox(Box3, Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
iBSplineDegree - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Degree of the BSpline basis functions.
iBSplineNumControlPoints - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Number of control points to use for the open/uniform BSpline basis functions.
IC_DBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
IC_ZBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
icAlgorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
icAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
icAlgorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
icAlgorithmPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
icall - Variable in class gov.nih.mipav.model.algorithms.Integration2: if dqawoe is to be used only once, icall must be set to 1. assume that during this call, the c chebyshev moments (for clenshaw-curtis integration c of degree 24) have been computed for intervals of c lenghts (abs(b-a))*2**(-l), l=0,1,2,...momcom-1. c if icall.gt.1 this means that dqawoe has been c called twice or more on intervals of the same c length abs(b-a). the chebyshev moments already c computed are then re-used in subsequent calls. c if icall.lt.1, the routine will end with ier[0] = 6.
icall - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: if dqawoe is to be used only once, icall must be set to 1. assume that during this call, the c chebyshev moments (for clenshaw-curtis integration c of degree 24) have been computed for intervals of c lenghts (abs(b-a))*2**(-l), l=0,1,2,...momcom-1. c if icall.gt.1 this means that dqawoe has been c called twice or more on intervals of the same c length abs(b-a). the chebyshev moments already c computed are then re-used in subsequent calls. c if icall.lt.1, the routine will end with ier[0] = 6.
ICC_PROFILE - Static variable in class gov.nih.mipav.model.file.FileSVS
ICC_PROFILE - Static variable in class gov.nih.mipav.model.file.FileTiff
icc_profile_buf - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t: 'restricted' ICC profile
icc_profile_len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t: size of ICC profile
ICC_TAG_TYPE_CURV - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_DESC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_MEAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_MLUC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_SIG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_TEXT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
ICC_TAG_TYPE_XYZ_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
IccDescriptor(MetadataExtractor.IccDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IccDescriptor
IccDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory
iCCP - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
IccReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IccReader
IccReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.IccReaderTest
icdft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
iCenter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
icfft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
icfft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
icfft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ICG - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality IndoCyanine Green.
ICG - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality IndoCyanine Green.
Ichannels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
icNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: number of independent components to be retained.
icNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Number of independent components
Ico - gov.nih.mipav.model.file.MetadataExtractor.FileType
ICO - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .ico.
icol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
iComponent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: DOCUMENT ME!
ICON_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_LINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_MEDICAL_FRAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_MEDICAL_FRAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_MEDICAL_FRAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_POLYGON - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_POLYGON - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_POLYGON - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_POLYLINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_POLYLINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_POLYLINE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_PROTRACTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_PROTRACTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_PROTRACTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_X_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_X_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_X_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_Y_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_Y_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_Y_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
ICON_Z_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
ICON_Z_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
ICON_Z_AXIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
iconbase - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams
iconCache - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel.JFileTreeCellRenderer
iconHeight - Variable in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage
iconWidth - Variable in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage
ICOPY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ICOQR1(int, int, int, int, int, double, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], int[], double[], double[], int, double[], double[], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ICOS_HIST - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ICOS_HIST - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
icos_hist_bin(SIFT3D.SIFT3DC, SIFT3D.Cvec, SIFT3D.Cvec, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
ICOS_NFACES - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ICOS_NVERT - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
icosahedralCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
icount - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
icount - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
ICOUNT - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
icp - Variable in class gov.nih.mipav.model.file.FileZVI
icp2 - Variable in class gov.nih.mipav.model.file.FileZVI
icp3 - Variable in class gov.nih.mipav.model.file.FileZVI
icp4 - Variable in class gov.nih.mipav.model.file.FileZVI
icp5 - Variable in class gov.nih.mipav.model.file.FileZVI
icp6 - Variable in class gov.nih.mipav.model.file.FileZVI
icp7 - Variable in class gov.nih.mipav.model.file.FileZVI
icpOriginalX - Variable in class gov.nih.mipav.model.file.FileZVI
icpOriginalY - Variable in class gov.nih.mipav.model.file.FileZVI
icpX - Variable in class gov.nih.mipav.model.file.FileZVI
icpY - Variable in class gov.nih.mipav.model.file.FileZVI
ICS - Static variable in class gov.nih.mipav.model.file.FileUtility: Image Cytometry Standard. extension: .ics, .ids
id - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D.intObject
id - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D.intObject: DOCUMENT ME!
id - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D.intObject: DOCUMENT ME!
id - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
id - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
id - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dec_memory_marker_handler_t: marker value
id - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
id - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
id - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: id for the VOI
id - Variable in class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
id - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
id - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: MouseEvent id.
id - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: DOCUMENT ME!
id - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
id() - Method in class gov.nih.mipav.model.algorithms.LSCM.Face
id() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
ID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
ID - Variable in class gov.nih.mipav.model.structures.VOI: ID of the VOI, also used when choosing the display color.
ID - Static variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
ID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
ID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
id_face(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
ID_OBJECTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
ID_OFFSET - Variable in class gov.nih.mipav.model.file.FileDicom: Location of 'DICM'.
id_vertex(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
idamax_(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
IDAT - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
idcodeAnatParentString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
idcodeDate - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
idcodeDateString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
idcodeString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
idcodeString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
idcodeWarpParentString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
idct - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
idealBPKernel2D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized bandpass kernel in 2 dimensions.
idealBPKernel2D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized bandpass kernel in 2 dimensions.
idealBPKernel3D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized bandpass kernel in 2 dimensions.
idealBPKernel3D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized bandpass kernel in 2 dimensions.
idealBSKernel2D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized bandstop kernel in 2 dimensions.
idealBSKernel2D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized bandstop kernel in 2 dimensions.
idealBSKernel3D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized bandstop kernel in 3 dimensions.
idealBSKernel3D(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized bandstop kernel in 3 dimensions.
idealBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Buffer holding calculation for noiseless U(x,y).
idealHPKernel2D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized highpass kernel in 2 dimensions.
idealHPKernel2D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized highpass kernel in 2 dimensions.
idealHPKernel3D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized highpass kernel in 3 dimensions.
idealHPKernel3D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized highpass kernel in 3 dimensions.
idealLPKernel2D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized lowpass kernel in 2 dimensions.
idealLPKernel2D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized lowpass kernel in 2 dimensions.
idealLPKernel3D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Builds the idealized lowpass kernel in 3 dimensions.
idealLPKernel3D(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Builds the idealized lowpass kernel in 3 dimensions.
identicalDesiredArraySize - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
identifyGroups(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
identifyGroups(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
identifyGroups(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
identifyObjects(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Labels each object in an image with a different integer value.
identifyObjects(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Labels each object in an image with a different integer value.
identifyRegions() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
IDENTITY - gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType
IdentityParameterization(int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
idim - Variable in class gov.nih.mipav.model.algorithms.curev: Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.
iDimMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Max Dimension of X, Y, and Z.
iDimX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: X Dimension.
iDimY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Y Dimension.
iDimZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Z Dimension.
IDList - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
IDList() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
IDList(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
IDobjects() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
IDobjects(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Eliminate the small binary mask components.
idObjectsAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Morphology25D algorithm reference.
idObjectsAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Morphology2D algorithm reference.
idObjectsAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
idObjectsAlgo2D - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
idObjectsAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Morphology3D algorithm reference.
idObjectsAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
IDTagFileName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
idType - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
idwt(double[], int, double[], int, double[], int, PyWavelets.DiscreteWavelet, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt_axis(double[][][], double[][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt_axis(double[][], double[][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt_axis(double[], PyWavelets.ArrayInfo, double[], PyWavelets.ArrayInfo, double[], PyWavelets.ArrayInfo, PyWavelets.DiscreteWavelet, int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt_buffer_length(int, int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt_single(double[], double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt13(double[][][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt2(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt23(double[][][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwt3(double[][][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwtn13(HashMap<String, double[][][]>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwtn2(HashMap<String, double[][]>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwtn23(HashMap<String, double[][][]>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idwtn3(HashMap<String, double[][][]>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
idx - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker
idx - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tri
idx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
idx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue.HeapNode
idx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredEdgeIndex
idx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.EdgeIndex
idx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangleIndex
idx1Position - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
ie - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.it_node
ieeeck(int, double, double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: Version 3.2 auxiliary routine ported form LAPACK Original IEEECK created by Univ. of Tennessee, Univ. of California Berkeley, University of Colorado Denver, and NAG Ltd., November, 2006 ieeeck is called form the ilaenv routine to verify that infinity and possibly NaN arithmetic is safe (i.e. will not trap)
IEND - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
ier - Variable in class gov.nih.mipav.model.algorithms.curev
ier - Variable in class gov.nih.mipav.model.algorithms.curfit
ier - Variable in class gov.nih.mipav.model.algorithms.Integration2: ier[0] = 0 for normal and reliable termination of the routine.
ier - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: ier[0] = 0 for normal and reliable termination of the routine.
ier - Variable in class gov.nih.mipav.model.algorithms.splev
ier - Variable in class gov.nih.mipav.model.algorithms.sproot
IER - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ierlst - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqawfe vector of dimension at least limlst ierlst[k] contains the error flag corresponding with rstlst[k].
ierlst - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqawfe vector of dimension at least limlst ierlst[k] contains the error flag corresponding with rstlst[k].
IERTXT(int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
iev - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
iev - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
iexpand(int[], SuperLU.MemType, int, int, SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ifail - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
IFCT(double[], double[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
IFCT2D(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
IFD - gov.nih.mipav.model.file.FileSVS.Type: The IFD type is identical to LONG, except that it is only used to point to other valid IFDs
IFD - gov.nih.mipav.model.file.FileTiff.Type: The IFD type is identical to LONG, except that it is only used to point to other valid IFDs
IFDoffsets - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
IFDoffsets - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
IFDoffsets - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
IFDoffsets - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ifft_dit(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: void ifft_dit(double z[], int n) Purpose: Computes the inverse discrete Fourier transform of a complex sequence z, using a radix 2 decimation-in-time FFT.
ifft_dit_iter(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: static void ifft_dit_iter(double *z, unsigned long n) Purpose: Computes the inverse discrete Fourier transform of a complex sequence z, using an iterative radix 2 decimation-in-time FFT.
ifft_dit_rec(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform: static void ifft_dit_rec(double z[], int n, int nbranch) Purpose: Computes the inverse discrete Fourier transform of a complex sequence z, using a radix 2 decimation-in-time FFT.
ifft2(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
ifftshift(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
ifftshift(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
ifftshift(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ifftshift(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ifftShift(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
ifftshift1d(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ifill(int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
iFinal - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
iflag - Variable in class gov.nih.mipav.model.algorithms.ODE
iflag - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ifree - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
ifree - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
ifSuccess - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
igam(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
IGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
igamc(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
IGAMC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
igami(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
IGAMI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
IGEOM - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
IGNLVL(double[], double[], double[], double[], double[], double[], int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ignore - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams
Ignore - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams
ignoreAction() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Empties the right-list, then closes the dialog.
ignoreCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: whether or not to use center of gravity for first translation.
ignoreCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: whether or not to use center of gravity for first translation.
ignoreMax - Variable in class gov.nih.mipav.model.structures.VOI: Sets the maximum intensity value for operations on B & W images segmented by this VOI
ignoreMaxB - Variable in class gov.nih.mipav.model.structures.VOI: Sets the maximum blue intensity value for operations on RGB images segmented by this VOI
ignoreMaxG - Variable in class gov.nih.mipav.model.structures.VOI: Sets the maximum green intensity value for operations on RGB images segmented by this VOI
ignoreMaxR - Variable in class gov.nih.mipav.model.structures.VOI: Sets the maximum red intensity value for operations on RGB images segmented by this VOI
ignoreMin - Variable in class gov.nih.mipav.model.structures.VOI: Sets the minimum intensity value for operations on B & W images segmented by this VOI
ignoreMinB - Variable in class gov.nih.mipav.model.structures.VOI: Sets the minimum blue intensity value for operations on RGB images segmented by this VOI
ignoreMinG - Variable in class gov.nih.mipav.model.structures.VOI: Sets the minimum green intensity value for operations on RGB images segmented by this VOI
ignoreMinR - Variable in class gov.nih.mipav.model.structures.VOI: Sets the minimum red intensity value for operations on RGB images segmented by this VOI
ignoreMouseMotion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: flag to invoke the mouse motion event or not.
ignoreMouseMotion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: flag to invoke the mouse motion event or not.
ignoreSlice - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: set true if deleteSlice hit in ViewJFrameAnimate
ignoreSlice - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
ignoreSlice() - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Method to ensure img[slice] is not displayed.
ignoreSlice() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Method to ensure img[slice] is not displayed.
iGradientDescentMinimizeMaxSteps - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Maximum number of steps to test when locating the minimum of the gradient descent.
IGUESS - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
IGUESS - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
IHB_LENGTH - Static variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream: Length of Image Header Box
IHDR - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType: Denotes a critical MetadataExtractor.PngChunk that contains basic information about the PNG image.
IHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
IHN3Correction2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: IHN3Correction2().
IHN3Correction3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: IHN3Correction3.
IHN3CorrectionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
IHN3CorrectionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
IHN3CorrectionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
IHN3CorrectionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
IHN3CorrectionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
IHN3CorrectionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
IHN3CorrectionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Inhomogeneity N3 correction.
IHN3CorrectionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
IHN3CorrectionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
IHN3CorrectionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
IHN3CorrectionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
IHN3CorrectionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
iImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
iKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
iKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
ikeysComparator() - Constructor for class gov.nih.mipav.model.algorithms.SIFT.ikeysComparator
ikv_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.ikv_t
ikvsorti(int, METIS.ikv_t[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
il - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
iladlc(int, int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of LAPACK auxiliary routine (version 3.2.1) ILADLC, April 2009 Original ILADLC created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd.
iladlr(int, int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: This is a port of LAPACK auxiliary routine (version 3.2.1) ILADLR, April 2009 Original ILADLR created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd.
ilaenv(int, String, String, int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: ilaenv is ported from the version 3.2.1 LAPACK auxiliary routine Original ILAENV created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver and NAG Ltd., April, 2009
ilast - Variable in class gov.nih.mipav.model.algorithms.CVODES
ILI - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
ILLEGAL_YMEAN - gov.nih.mipav.model.algorithms.libdt.Ymean_type: < model non-zero observation mean.
ILLUMCHANNEL_DETCHANNEL_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_ENTRY_ACQUIRE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_ENTRY_POWER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_ENTRY_WAVELENGTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_POWER_BC1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ILLUMCHANNEL_POWER_BC2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
illuminationType - Variable in class gov.nih.mipav.model.file.FileInfoCZI
illuminationType - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
illuminationWavelength - Variable in class gov.nih.mipav.model.file.FileInfoCZI
iLoc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
ilog2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
ilu_countnz(int, int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_dcolumn_dfs(int, int, int[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_dcopy_to_ucol(int, int, int[], int[], int[], double[], int, SuperLU.milu_t, double, int, double[], int[], SuperLU.GlobalLU_t, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_ddrop_row(SuperLU.superlu_options_t, int, int, double, int, int[], double[], SuperLU.GlobalLU_t, double[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_dpanel_dfs(int, int, int, SuperLU.SuperMatrix, int[], int[], double[], double[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_dpivotL(int, double, boolean[], int[], int, int[], int[], int[], int[], double, SuperLU.milu_t, double, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_dQuerySpace(SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.mem_usage_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ILU_DropRule - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ILU_DropTol - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ilu_dsnode_dfs(int, int, int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ILU_FillFactor - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ILU_FillTol - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ilu_heap_relax_snode(int, int[], int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ILU_MILU - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ILU_MILU_Dim - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ILU_Norm - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ilu_relax_snode(int, int[], int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_set_default_options(SuperLU.superlu_options_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zcolumn_dfs(int, int, int[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zcopy_to_ucol(int, int, int[], int[], int[], SuperLU.doublecomplex[], int, SuperLU.milu_t, double, int, SuperLU.doublecomplex, int[], SuperLU.GlobalLU_t, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zdrop_row(SuperLU.superlu_options_t, int, int, double, int, int[], double[], SuperLU.GlobalLU_t, double[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zpanel_dfs(int, int, int, SuperLU.SuperMatrix, int[], int[], SuperLU.doublecomplex[], double[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zpivotL(int, double, boolean[], int[], int, int[], int[], int[], int[], double, SuperLU.milu_t, SuperLU.doublecomplex, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ilu_zsnode_dfs(int, int, int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
im - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.tImage
im - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
im - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
im_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
im_alloc_key - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 506 13 characters Process that allocated this record.
im_archived - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 544 (internal use) Image Archive Flag.
im_checksum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 540 (internal use) AcqRecon record checksum.
im_complete - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 548 (Internal use) Image Complete Flag.
im_copy_data(SIFT3D.Image, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_copy_dims(SIFT3D.Image, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_default_stride(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_downsample_2x(SIFT3D.Image, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_format() - Constructor for enum gov.nih.mipav.model.algorithms.SIFT3D.im_format
im_free(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
IM_GET_GRAD_ISO(SIFT3D.Image, int, int, int, int, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_inv_transform(SIFT3D.Affine, SIFT3D.Image, SIFT3D.interp_type, int, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_lastmod - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 520.
im_max_abs(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
IM_NDIMS - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
im_pds_a - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 528 PixelData size - as stored.
im_pds_c - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 532 PixelData size - compressed.
im_pds_u - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 536 PixelData size - Uncompressed.
im_permute(SIFT3D.Image, int, int, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_resize(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_scale(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_subtract(SIFT3D.Image, SIFT3D.Image, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im_verscre - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 524 2 characters Genesis Version - Created.
im_verscur - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 526 2 characters Genesis Version - Now.
im_zero(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
im2mm(SIFT3D.Mat_rm, double[], SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
imag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation.complex_t
imag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP.complex_t
imagA - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
imagB - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
imagData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter: DOCUMENT ME!
imagData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Imaginary data.
imagData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Imaginary data.
imagData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
imagData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Imaginary data.
image - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The source image.
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Reference to the image.
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Reference to the image.
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: source image.
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance: Model Images
image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The source image.
image - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
image - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
image - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
image - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: source image.
image - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients
image - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
image - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
image - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: images
image - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileAnalyze: The image read in from the file.
image - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileCheshire: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileDicom: Reference to the image read into the application.
image - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Image data we're reading.
image - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileImageXML: Model Image associated with the file.
image - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileJP2: Model Image.
image - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t2_t: Encoding: pointer to the src image.
image - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: image header
image - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileOME: The image to read or write.
image - Variable in class gov.nih.mipav.model.file.FilePaintBitmap: Image used to reference properties of the image to aid reading and writing of the VOI.
image - Variable in class gov.nih.mipav.model.file.FilePARREC: The image read in from the file.
image - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileSiemensText: The image read in from the file.
image - Variable in class gov.nih.mipav.model.file.FileSpar: The image read in from the file.
image - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.FileTrackVis: Created image
image - Variable in class gov.nih.mipav.model.file.FileVista: image
image - Variable in class gov.nih.mipav.model.file.FileVOI: Image used to reference properties of the image to aid reading and writing of the VOI.
image - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW
image - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor
image - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: image store
image - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: image store
image - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: images
image - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
image - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBlankImage: The blank image to be created.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D: Use serialVersionUID for interoperability.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: The source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: ref to image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: src image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Reference to the image that will be affected by the adjust of the window and level.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: Source Image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Model images A and B.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Source image for extracting brain, default image is null.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Source Image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: model image associated with the FileInfo.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
image - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Source Image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: source image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: ModelImage reference.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
image - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogReslice: Image to reslice.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRotate: Source image for algorithm.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: source image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSwap34: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI: This source image is typically set by the constructor
image - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogThinning2D: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Source image.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: image and cloned image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: image and cloned image
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Global image reference to the currently active image during script running and recording.
image - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Internal reference to the currently selected ModelImage
image - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Reference to the image that will be affected by the adjust of the window and level.
image - Variable in class gov.nih.mipav.view.dialogs.MultiPaintAutoSave: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.PaintAutoSave: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Image file used to store images created through the screen capture function
image - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
image - Variable in class gov.nih.mipav.view.JPanelHistogram: input image
image - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Reference to the image as ModelImage instance.
image - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The image whose histo lut we are displaying.
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModel
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModelSVM
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
image - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The image whose histo lut we are displaying.
image - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: The model image this preview image is derived from.
image - Variable in class gov.nih.mipav.view.ViewJFrameGraph
image - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The image.
image - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
image - Variable in class gov.nih.mipav.view.ViewSplashScreen: The splash screen image.
Image - gov.nih.mipav.view.Argument.InstanceArgument
Image() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Image
Image(String, String, String, Integer, Integer, Integer, Integer, Integer, Float, Float, Float, Float, Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image: Creates a new Image object.
IMAGE - gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode
IMAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Denotes image should be flipped without VOI.
IMAGE_A - Static variable in class gov.nih.mipav.model.structures.ModelImage: Used to indicate that this image object is Image A when two images are displayed in the same frame.
IMAGE_A - Static variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
IMAGE_A - Static variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
IMAGE_A - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Display mode image A.
IMAGE_A - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Display mode image A.
IMAGE_A - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Display mode image A.
IMAGE_A - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
IMAGE_A - Static variable in class gov.nih.mipav.view.ViewJFrameBase: Display mode image A.
IMAGE_A_B - Static variable in class gov.nih.mipav.view.ViewJFrameBase: Display mode image A and B.
IMAGE_ALIGN_TOOLBAR - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
IMAGE_AND_VOI - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Image and all VOIs should be flipped.
IMAGE_B - Static variable in class gov.nih.mipav.model.structures.ModelImage: Used to indicate that this image object is Image B when two images are displayed in the same frame.
IMAGE_B - Static variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
IMAGE_B - Static variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
IMAGE_B - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Display mode image B.
IMAGE_B - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Display mode image B.
IMAGE_B - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Display mode image B.
IMAGE_B - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
IMAGE_B - Static variable in class gov.nih.mipav.view.ViewJFrameBase: Display mode image B.
image_border_width - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
image_border_width - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
image_data - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
IMAGE_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
IMAGE_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
IMAGE_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
IMAGE_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
IMAGE_DROP - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
image_format - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
image_grayscale - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
image_grayscale_pixels - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
image_height - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
image_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
IMAGE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
IMAGE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
IMAGE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
IMAGE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
IMAGE_LEVEL - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
image_method - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
image_method_final - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
IMAGE_NAME_ACTION_LABEL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The label to use for the parameter indicating whether the image name should be replaced, prepended to, or appended to.
IMAGE_NAME_LABEL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The label to use for the parameter indicating the new image name.
image_normalization(double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to normalize the images between 0 and 255
image_normalization(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Function to normalize the images between 0 and 255
IMAGE_ORIENTATION - Static variable in class gov.nih.mipav.model.file.FileDicom
IMAGE_ORIENTATION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: The label to use for the parameter indicating the new orientation
IMAGE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
IMAGE_ORIGIN - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: The label to use for the parameter indicating the new origin
IMAGE_POSITION - Static variable in class gov.nih.mipav.model.file.FileDicom
IMAGE_RESOLUTIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: The label to use for the parameter indicating the new resolutions.
image_rgb_pixels - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
IMAGE_SOURCE_DATA - Static variable in class gov.nih.mipav.model.file.FileSVS
IMAGE_SOURCE_DATA - Static variable in class gov.nih.mipav.model.file.FileTiff
IMAGE_STR - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Used for XML tag for an image.
IMAGE_TAG - Static variable in class gov.nih.mipav.model.file.FileDicom: The tag marking the start of the image data.
image_type - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 584 Magnitude, Phase, Imaginary, or Real.
image_uid - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 746 32 characters Image Unique ID.
IMAGE_UNITS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: The label to use for the parameter indicating the new units
image_width - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
image_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
image1 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
image1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
image1Slice - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
image2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: private ModelImage srcImage;.
image2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
image2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: private ModelImage srcImage;.
image2 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
image2 - Variable in class gov.nih.mipav.model.file.FileMATLAB
image2 - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
image2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
image2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
image2 - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: If true process each image of a 3D volume independently.
image25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: If image25D is true in 3D images, process each slice separately
image25D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: If true in 3D images, process each slice separately
image25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: If true process each slice one at a time in 3D image.
image25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: If true process each slice one at a time in 3D image.
image25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: If true process each slice one at a time in 3D image.
image25D - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Boolean telling if 3D images are processed 1 slice at a time.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Flag indicating if slices should be blurred independently.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: false = apply algorithm only to VOI regions.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: false = apply algorithm only to VOI regions.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: Whether algorithm should run seperately on each slice of a 3D image
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Flag indicating if slices should be blurred independently.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Flag indicating if slices should be blurred independently.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Flag indicating if slices should be blurred independently.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: false = apply algorithm only to VOI regions.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: false = apply algorithm only to VOI regions.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: false = apply algorithm only to VOI regions.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: true means do each slice individually, false means do them all together.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel: Flag indicating if slices should be blurred independently.
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
image25D - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Process each slice independently, or as a 3D image.
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: User can indicate whether the FFT of each slice of a 3D image is computed seperately
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: of similar brightness voxels is empty, a local median filter is used.
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel: DOCUMENT ME!
image25DCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
image25DCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
image25DCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
image2patches(ModelImage, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
Image2Vector(ModelSimpleImage, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Conversion from shape-free image to a texture vector.
image4D - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: ModelImage of 4D par/rec dataset
imageA - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.model.file.FileIO
imageA - Variable in class gov.nih.mipav.model.file.FileSpar
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: source image.
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: source image.
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: source image.
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Image to transform.
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogVABRA: source image.
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: src image
imageA - Variable in class gov.nih.mipav.view.JFrameHistogram: source image A
imageA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Model image A.
imageA - Variable in class gov.nih.mipav.view.PatientSlice: imageA:.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Model image A.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reference to the image A of this frame.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Structure holding image.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Current image A.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Current image A.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Model for image A.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Model for image A.
imageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Current image A.
imageA - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Model images A and B.
imageA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

image A reference.
imageA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Model image A, B.
imageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
imageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
imageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
imageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
imageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
imageA - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: imageA - model for image A.
imageA - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: imageA - model for image A.
imageA - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: imageA - model for image A.
imageA - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: model image *
imageA - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Model for image A.
imageA - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to the image A of this frame.
imageA - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
imageA - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
ImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
imageA_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageActive - Variable in class gov.nih.mipav.view.PatientSlice: The current active image:.
imageActive - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Model for active image.
imageActive - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Model for active image.
imageActive - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Which image is currently active
imageActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Active image.
imageActiveIndex - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageActiveIndex - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imageAInfo - Variable in class gov.nih.mipav.model.file.FileSpar: imageA file info
imageAlignToolBar - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
imageAn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageAn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageAngulation - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
imageAngulation - Variable in class gov.nih.mipav.model.file.FilePARREC
imageAngulationIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
imageAngulationPos - Variable in class gov.nih.mipav.model.file.FilePARREC
imageAnSWT - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageAnSWT_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageAOriginal - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reference to the imageA original copy.
imageAOriginal - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: The non-cloned image which we want to load into the renderer.
ImageAsTexture(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Turn surface texture on/off.
imageAttacher - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Boolean indicating if JDialogCaptureScreen has been initialized through ReportBugBuilder
ImageAttribute(String, String, Hashtable<String, Vector>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute
ImageAttributes(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
ImageAttributes(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
ImageAttributes(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
ImageAttributes(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
imageAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
imageAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
imageAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Graph axes helper classes for displaying the axes of the 2D Histogram:
imageB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: blue channel image
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Source image.
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Model images A and B.
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Image B to transform, can be null.
imageB - Variable in class gov.nih.mipav.view.dialogs.JDialogVABRA: target image
imageB - Variable in class gov.nih.mipav.view.JFrameHistogram: source image B
imageB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Model image B.
imageB - Variable in class gov.nih.mipav.view.PatientSlice: imageB:.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Model image B.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reference to the image Bof this frame.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Current image B.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Current image B.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Model for image A.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Model for image A.
imageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Current image B.
imageB - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Model images A and B.
imageB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

image B reference.
imageB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

ImageB reference.f
imageB - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: imageB - model for image B.
imageB - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: imageB - model for image B.
imageB - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: imageB - model for image B.
imageB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Model for image B.
imageB - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to the image B of this frame.
imageB - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
imageB - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
ImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
imageB0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: The B0 image from the original 4D DWI image series, extracted from the DWI volume:
imageBInit() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
imageBlackValueArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageBorder - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageBorderVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
imageBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Branch parent of the image in the scene, needed so image can be made invisible when another surface is loaded.
imageBuffer - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Buffer used to store image intensities the presently viewed slice of image.
imageBuffer2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
imageBufferA - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
imageBufferA - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Buffer used to store image intensities the presently viewed slice of image A.
imageBufferA - Variable in class gov.nih.mipav.view.PatientSlice: The imageBuffer that stores the current ModelImage slice data for imageA:.
imageBufferA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Buffer which holds the pixel data.
imageBufferA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer holding image data for image A.
imageBufferA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
imageBufferA - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Buffer used to store image intensities the presently viewed slice of image A.
imageBufferA - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer for image A, raw intensity.
imageBufferA - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
imageBufferA - Variable in class gov.nih.mipav.view.ViewJFrameImage: Buffer used to store image intensities the presently viewed slice of image A.
imageBufferA - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageBufferA - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
imageBufferA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
imageBufferA_GM - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer holding image data for imageA GM.
imageBufferActive - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer holding image data for active image.
imageBufferActive - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
imageBufferActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer for active image.
imageBufferB - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
imageBufferB - Variable in class gov.nih.mipav.view.PatientSlice: The imageBuffer that stores the current ModelImage slice data for imageB:.
imageBufferB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer holding image data for image B.
imageBufferB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer for image B, raw intensity.
imageBufferB - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
imageBufferB - Variable in class gov.nih.mipav.view.ViewJFrameImage: Buffer used to store image intensities the presently viewed slice of image B.
imageBufferB - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageBufferB - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
imageBufferB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
imageBufferB_GM - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer holding image data for imageB GM.
imageBufferColocalize - Variable in class gov.nih.mipav.view.PatientSlice: colocalization imageBuffer:.
imageBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
imageBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
imageBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
imageBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
imageBufferOriginalB - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
imageBufferOriginalB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
imageC2Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageC3Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageC6Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageC7Array - Variable in class gov.nih.mipav.model.file.FileZVI
ImageCellRenderer() - Constructor for class gov.nih.mipav.view.ViewJFrameRegisteredImages.ImageCellRenderer: Identifies components that can be used as "rubber stamps" to paint the cells in a JList.
imageCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: image center
imageCenterButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
imageChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
imageChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
imageChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
imageColocalize - Variable in class gov.nih.mipav.view.PatientSlice: colocalization image:.
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Combobox to select the second image.
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Image list for user to pick registered image
imageComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
imageComp - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageComp - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
ImageConverter(Image) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.ImageConverter
imageCopy - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: A copy of the source image to run the algorithm on.
imageCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
imageCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
imageCount - Variable in class gov.nih.mipav.model.file.FileZVI
imageCounter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
imageCountFieldOne - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
imageCountFieldTwo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
imageCreationDate - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageCreationDate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageCreationTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageCreationTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageCrop - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
imageCrop - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
imageCrop - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
imageCrop - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
imageCropCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
imageCropCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
imageD - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageD_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageDataDescription - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageDataFileName - Variable in class gov.nih.mipav.model.file.FileInfoXML: Name (not path) of the (usually raw) image data file.
ImageDataSource(int, int, int, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: Constructor for creating movies out of Images NOTE - this is all done IN MEMORY, so you'd better have enough.
ImageDataSource(int, int, int, File[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource: Constructor for creating movies out of jpegs.
ImageDataSource(int, int, int, Vector) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource: Creates a new ImageDataSource object.
ImageDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ImageDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ImageDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoBioRad: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoJP2: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoLSM
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoSTK: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoSVS: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoTiff: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileInfoXML: Brief description of the image - optional XML tag.
imageDescription - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
imageDescription - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
imageDestBrowse - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
imageDestDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: private File srcDirectory; // Defined by the.
imageDestDirText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
imageDestinationDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
imageDim - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
imageDims - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
imageDimX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 42.
imageDimY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 46.
imageDn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageDn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imagedNucleus - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
ImagedNucleus - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
imageDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageDurationIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageElementLength - Variable in class gov.nih.mipav.model.file.FileDicomBase
imageElementWord - Variable in class gov.nih.mipav.model.file.FileDicomBase
imageExtentMax - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
imageExtents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Extents of the image.
imageExtents - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Extents of the 3D image.
imageExtents - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: The dimensionality of the image.
imageFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Controls how much the image influences the surface evolution.
imageFieldStrength - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageFieldStrength - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageFileName - Variable in class gov.nih.mipav.model.file.FileImageXML: Name of the RAW (or IMG) file associated with the XML header.
imageFileName - Variable in class gov.nih.mipav.model.file.FileOME: The name of the raw image data file.
imageFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
imageFill - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Set the mask areas to this value.
imageFillB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: DOCUMENT ME!
imageFillG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: DOCUMENT ME!
imageFillI - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
imageFillR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: DOCUMENT ME!
imageFilter - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This is the image filter needed to select the correct dicom images
imageFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: DOCUMENT ME!
imageFilter - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
imageFocusPositionArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: on the contour VOI occurs.
imageFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow
imageFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: The parent image frame.
imageFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
imageFrame - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageFrame - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageFrame - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imageFrame2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
imageFrame3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
imageFrame4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
imageFrameVector - Variable in class gov.nih.mipav.view.ViewUserInterface: Stores array of images frames the first of which is the active image frame.
imageFullName - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
imageFuzzyCMeanNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
imageG - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: green channel image
imageG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
imageGroupWord - Variable in class gov.nih.mipav.model.file.FileDicomBase
imageH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
imageHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
imageHashtable - Variable in class gov.nih.mipav.view.ViewUserInterface: A list of image models currently open in MIPAV.
imageHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
imageHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
imageHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
imageHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
imageHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
imageHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
imageHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
imageHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeaderCreatorProcess - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderCreatorProcess - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeaderCreatorTask - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderCreatorTask - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeaderDisclaimer - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderDisclaimer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeaderID - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageHeight - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Image height.
imageHeight - Variable in class gov.nih.mipav.model.file.FileZVI
imageHeight - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
imageHeight - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageHH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageIcon - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer: DOCUMENT ME!
imageIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet
imageIndexCombos0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
imageIndexCombos180 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
imageInfluenceBET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Parameter for brain extraction by default set to .1
imageInfluenceBET - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: the depth to calculate in approximating brain maximum and minimum intensities.
imageInfluenceField - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: The text field corresponding to imageInfluenceField.
imageInfoList - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Isotropic input image.
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Isotropic input image.
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Isotropic input image.
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Isotropic input image.
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Isotropic input image.
imageInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Isotropic input image.
imageIntensityFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
imageIntensityFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
imageIntensityFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: flag to indicate the image intensity filter enabled or not.
imageIntensityFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: image intensity.
imageIntensityFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
imageIntensityFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
ImageJ - gov.nih.mipav.view.Preferences.DefaultDisplay: ImageJ default setting
ImageJToModelImageConversion - Class in gov.nih.mipav.model.structures
ImageJToModelImageConversion() - Constructor for class gov.nih.mipav.model.structures.ImageJToModelImageConversion
imageL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLength - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
imageLength - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
imageLH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
imageList - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
imageList - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: The list of images and frames
imageList2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
imageList2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
imageLL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLH - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLH_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLHn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLHn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLL - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLL_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLLnSWT - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLLnSWT_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageLoadReady - Variable in class gov.nih.mipav.model.file.FileDicom: Whether adequate processing of the file has occurred to allowed image to be extracted, this includes getting offset and pixel representation.
imageLocation - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageLocation - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageMarginsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
imageMathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert
imageMatrix - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageMatrix - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE
imageMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
imageMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
imageMax - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
imageMax - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
imageMax - Variable in class gov.nih.mipav.view.ViewJFrameGraph
imageMemoryUsage - Variable in class gov.nih.mipav.model.file.FileInfoZVI
imageMenu - Variable in class gov.nih.mipav.view.ViewMenuBar: The menu listing image and overlay commands
imageMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: DOCUMENT ME!
imageMin - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
imageMin - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
imageMin - Variable in class gov.nih.mipav.view.ViewJFrameGraph
imageMinA - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
imageMode - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ImageModel(int, ModelImage, Hashtable<String, Vector<Model>>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModel
ImageModelSVM(int, ModelImage, Hashtable<String, Vector<svm_model>>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModelSVM
imageName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
imageName - Variable in class gov.nih.mipav.model.structures.ModelImage: ImageName is patient's name when using DICOM images.
imageName - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
imageName - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
imageName - Variable in class gov.nih.mipav.view.dialogs.JDialogSwap34: DOCUMENT ME!
imageName - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims: DOCUMENT ME!
imageName - Variable in class gov.nih.mipav.view.dialogs.ScriptImage
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ModelString
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
imageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
imageNameArray - Variable in class gov.nih.mipav.model.structures.ModelImage: If imageNameArray is not null, then a different image name will appear on every slice
ImageNameComparator() - Constructor for class gov.nih.mipav.view.ViewImageDirectory.ImageNameComparator
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
imageNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageNameHashtable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageNameHashtable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageNameHashtable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageNameHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
imageNameHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
imageNameHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
imageNameHashtableExtra - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageNames - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageNames - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imageNamesIndex - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageNamesIndex - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imageNameText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
imageNode - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The image node that holds information about the image data (rescaling, dimorder, actual data).
imageNode - Variable in class gov.nih.mipav.model.file.FileMincHDF: the image node of the HDF file tree that contains the image data, and min max per slice information
IMAGENODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Image node type, falls under an imageplaceholder node, created and deleted by user.
imageNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
imageNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
imageNum - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
imageNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 12.
imageNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
imageNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageNumber - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
imageNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
imageNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute
imageNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModel
imageNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModelSVM
ImageObject(CopyMoveAttackDetection2.Configuration, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
imageObserver(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Creates an ImageObserver that checks the for the specified infoflags.
imageOffcentre - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
imageOffcentre - Variable in class gov.nih.mipav.model.file.FilePARREC
imageOffcentreIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
imageOffcentrePos - Variable in class gov.nih.mipav.model.file.FilePARREC
imageOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
imageOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: image minimum; used as offset for images to build histogram.
imageOffset - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageOffset - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageOffset - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
imageOn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
imageOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: panels
imageOrder - Variable in class gov.nih.mipav.model.structures.ModelImage: Indicates the image order when two images are displayed in the same frame.
imageOrientation - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
imageOrientation - Variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates the image orientation (i.e.
imageOrientation - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imageOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Image orientation: coronal, sagittal, axial, unknown.
ImageOrientation(int, FileInfoBase.AxisOrientation, FileInfoBase.AxisOrientation, FileInfoBase.AxisOrientation) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
imageOrientationPatient - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
imageOrientationStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Array of image orientation strings.
imageOrientationString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: image orientation
imageOriginalStagePositionXArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageOriginalStagePositionYArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageOriginalZXArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageOriginalZYArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageOriginCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
imageOriginFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
imageOriginFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
imageOriginNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
imageOriginNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
imageOriginNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
imageOriginPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
imagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
imagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: The image panel to hold one Canvas3D.
imagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The image panel to hold one Canvas3D.
imagePanel - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
imagePanel - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imagePanel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
imagePanel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
imagePanelSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: per num visible images information.
imagePanelSizeX - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Per num visible images information.
imagePanelSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: per num visible images information.
imagePanelSizeY - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Per num visible images information.
imagePanelVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
imagePix - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: The image selected by the user
imagePix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
imagePix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
imagePixelFormat - Variable in class gov.nih.mipav.model.file.FileZVI
IMAGEPLACEHOLDERNODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Image placeholder node type never created nor deleted by user.
imagePlaneTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
imagePositionPatient - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
ImageProcessingException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.ImageProcessingException
ImageProcessingException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.ImageProcessingException
ImageProcessingException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.ImageProcessingException
imagePtr - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
ImageQuality - Class in gov.nih.mipav.model.algorithms
ImageQuality() - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, double, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], double, int[], int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], double, int, double, double, double, double, int, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double[][], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double, double, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double, double, double, double, double[][], double, int[], int, int, double[], int, double, double, int, double, double, double, double, int, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
ImageQuality(ModelImage, ModelImage, int[], int, double, double, double, int, double[], int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.ImageQuality
imageR - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: red channel image
imageR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
imageRangeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
imageRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Image influence ratio for controlling the sampling depth used to calculate intensity extrema, by default set to .1.
imageRatioTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Field for entering the image influence ratio.
imageRawDataSystemID - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageRawDataSystemID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ImageReduceEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render
ImageReduceEffect(Texture, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.ImageReduceEffect
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Isotropic reference image.
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Isotropic reference image.
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Isotropic reference image.
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Isotropic reference image.
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Isotropic reference image.
imageRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Isotropic reference image.
ImageRegistrationGPU - Class in gov.nih.mipav.view.renderer.WildMagic.Render
ImageRegistrationGPU(ModelSimpleImage, ModelSimpleImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
ImageRegistryMonitor - Class in gov.nih.mipav.view: Tracks registered images, and notifies anybody who is interested in finding out about them.
ImageRegistryMonitor() - Constructor for class gov.nih.mipav.view.ImageRegistryMonitor: Constructor.
imageRegistryMonitoring() - Method in class gov.nih.mipav.view.ViewUserInterface: Display image registry frame.
imageRelativeStartTime - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageRelativeStartTimeIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageRelativeTime - Variable in class gov.nih.mipav.model.file.FileZVI
imageRelativeTime0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
imageRelativeTime1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
imageRelativeTime2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
imageRelativeTime3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
imageRelFocusPosition1Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageRelFocusPosition2Array - Variable in class gov.nih.mipav.model.file.FileZVI
ImageReorientation - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
ImageReorientation(ModelImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
ImageRequirements(String) - Constructor for enum gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
imageRevisionSubnumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
ImageRotateScale(double[][], double, double, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
images - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult: array of images
images - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
images - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
images - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
images - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
images - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imagesAdded - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
imageSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
imageSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
imagesAllocated - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imagesAllocated - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ImageSaver() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver
ImageSaverException() - Constructor for exception gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver.ImageSaverException
ImageSaverException(String) - Constructor for exception gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver.ImageSaverException
ImageSaverException(String, Throwable) - Constructor for exception gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver.ImageSaverException
ImageSaverException(Throwable) - Constructor for exception gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver.ImageSaverException
imageScale - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
imagesChooser - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: target image variables.
imagesChooser - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: target image variables.
imageScroll - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
imageScroll - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
imagesData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 212.
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: image panel.
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: 2D slices image selection panel.
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
imageSelectionPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
imagesFound - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: DOCUMENT ME!
imageShape - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageShape - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imagesInfo - Variable in class gov.nih.mipav.model.file.FileInfoVista: image info
imageSize - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
imageSize - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
imageSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
imageSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
imagesLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 208 - (internal use) Image keys for this Series.
imageSlice - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
imageSlice - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
imageSlice - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
imageSlice - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
imageSlice - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
imageSlice1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: 2d image containing voi1
imageSlice2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: 2d image containing voi2
imageSlicesDirPath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: path for imageSlicesDir
imageSliderPane - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
imageSliderPane - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
ImageSourceStream(int, int, int, Vector) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: Creates a new ImageSourceStream object.
imageSpacing - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageSpacing - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imagesPerCardiacCycle - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imagesPerCardiacCycle - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imagesPerEWindow - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageStackFuzzyC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
imageStackFuzzyC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
imageStackFuzzyC - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
imageStackFuzzyCfat - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
imageStackFuzzyCfat - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
imageStackFuzzyCgre - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
imageStackFuzzyCgre - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
imageStagePositionXArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageStagePositionYArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageStartTime - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageStartTimeIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imageStatList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Statistics dialog VOI->Statistics generator...
imageStatList - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
imagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: images to concat
imagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: images to concat
imagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: images to concat
imagesToFront() - Method in class gov.nih.mipav.view.ViewUserInterface: Brings all images and message frame to the front.
imageStr - Static variable in class gov.nih.mipav.model.file.FileImageXML: array of strings representing the tags under in the xml schema.
imageSystemGenerationID - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageSystemGenerationID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageT2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: The T2 image that the B0 image is registered to.
imageT2Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageT3Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageT6Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageT7Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageTable - Variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: The table containing image-placeholder-to-image-name mappings for the script we are currently recording.
imageTable - Variable in class gov.nih.mipav.model.scripting.ScriptRecorder: The table containing image-placeholder-to-image-name mappings for the script we are currently recording.
imageTable - Variable in class gov.nih.mipav.model.scripting.ScriptRunner: The table containing image-placeholder-to-image-name mappings for the script we want to run.
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
imageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
imageTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
imageTableModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
imageTableSorter - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
imageTableVector - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser
imageTagLocation - Variable in class gov.nih.mipav.model.file.FileDicomBase
imageTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
ImageTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ImageTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ImageTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
imagetobmp(FileJPEG2000.opj_image_t, String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
imageToFront(String) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Using the supplied name as the image name, this method finds the frame associated with the image and brings it to the front.
imageToMovie - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
imageToolBar - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Image control toolbar.
imagetopgx(FileJPEG2000.opj_image_t, String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
imagetopnm(FileJPEG2000.opj_image_t, String, boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000
imagetoraw_common(FileJPEG2000.opj_image_t, String, boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000
imagetotga(FileJPEG2000.opj_image_t, String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
ImageTransferHandler() - Constructor for class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
imageType - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imageType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imageType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
imageType - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
imageType - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
imageType - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
imageType - Variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: DOCUMENT ME!
imageTypeEDES - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
imageTypeEDES - Variable in class gov.nih.mipav.model.file.FilePARREC
imageTypeEDES() - Method in class gov.nih.mipav.model.file.FileInfoPARREC
imageTypeEDESIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
imageTypeEDESPos - Variable in class gov.nih.mipav.model.file.FilePARREC
imageTypeMR - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
imageTypeMR - Variable in class gov.nih.mipav.model.file.FilePARREC
imageTypeMRIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
imageTypeMRPos - Variable in class gov.nih.mipav.model.file.FilePARREC
imageUpdatedDWI - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: After the B0 image is registered to the T2 image the B0 sub-volume is replaced in the original DWI image, creating a new 4D DWI image:
imageV - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageV_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageVariablePrefix - Static variable in class gov.nih.mipav.model.scripting.ImageVariableTable: The base image placeholder variable string prefix.
ImageVariableTable - Class in gov.nih.mipav.model.scripting: Stores image names, which are referenced by placeholder variable strings (e.g., '$image1').
ImageVariableTable() - Constructor for class gov.nih.mipav.model.scripting.ImageVariableTable: Creates a new ImageVariableTable object.
imageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.SliceSetString
imageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: image and voi string vector.
imageVn - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageVn_filter - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
imageVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
imageVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: DOCUMENT ME!
imageVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
imageVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
imageVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
imageVOIGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
imageVOIPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
imageVOIPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: used later.
imageVOIPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
imageVOIPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
imageVOIPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
imageVOIPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
imageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: VOI vector.
imageVolBufferA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Buffer that holds image A volume data.
imageVolBufferB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Buffer that holds image B volume data.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Isotropic weighted input image.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Isotropic weighted input image.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Isotropic weighted input image.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Isotropic weighted input image.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Isotropic weighted input image.
imageWeightInputIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Isotropic weighted input image.
imageWeightIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
imageWeightIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
imageWeightIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
imageWeightIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Isotropic weighted reference image.
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Isotropic weighted reference image.
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Isotropic weighted reference image.
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Isotropic weighted reference image.
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Isotropic weighted reference image.
imageWeightRefIso - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Isotropic weighted reference image.
imageWhiteValueArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageWidth - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Image width.
imageWidth - Variable in class gov.nih.mipav.model.file.FileZVI
imageWidth - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
imageWidth - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
imageZ2Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZ3Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZ4Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZ5Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZ6Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZ7Array - Variable in class gov.nih.mipav.model.file.FileZVI
imageZArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageZXArray - Variable in class gov.nih.mipav.model.file.FileZVI
imageZYArray - Variable in class gov.nih.mipav.model.file.FileZVI
imagiData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
imaginary - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryItem: DOCUMENT ME!
imaginaryValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
imaginaryValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: Used as both imaginary value and blue value
imagingFrequency - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
imagingModality - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
imagjData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
imagkData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
imagKernelData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
imagKernelData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
imagResult - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
imagResult - Variable in class gov.nih.mipav.model.algorithms.Gamma: Imaginary part of outputted result
imagResult - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric
imagResult - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
imagResult - Variable in class gov.nih.mipav.model.algorithms.Psi: Imaginary part of output result
imagX - Variable in class gov.nih.mipav.model.algorithms.Gamma: Imaginary part of input argument
imagX - Variable in class gov.nih.mipav.model.algorithms.Psi: Imaginary part of input argument
imagZ - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
imagZ - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric
imagZ - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
imark - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
imark - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
imark - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
iMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh: Access function to the incremental mark.
iMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
imax - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
imax - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
imax - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
iMaxIterations - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Maximum number of iterations to perform if convergence limit condition is still not satisfied.
IMCENTER - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
imCenterRB - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
iMCU_row_ctr - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
imData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
imdwt(double[][], int) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
imFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
img - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Img this pixel belongs to
img - Variable in class gov.nih.mipav.model.file.FileHistoLUT: ModelImage to use for reference
img - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
img - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: BufferedImage to hold the slice image.
img - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: the image rendered in 2D graphics:
img - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
img - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
Img(int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Img of specified dimensions.
Img(int, int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Img of specified dimensions.
Img(Dimension) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Img of specified Dimension.
Img(Dimension, int[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Img of specified dimensions.
Img(BufferedImage) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Img: Creates a new Img of same dimensions as provided BufferedImage.
img_fol_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.img_fol_t
img2Buffer - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
img3DMultiBuffer - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ImgAreaIterator(int, int, int, int, P) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator: Creates a new ImgAreaIterator for iterating the pixels in the specified area of an image.
ImgAreaSpliterator(int, int, int, int, int, int, int, Supplier) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
ImgAreaSpliterator(int, int, int, int, int, Supplier) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator: Constructs a new ImgAreaSpliterator for the specified area
imgB - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
imgBegin - Variable in class gov.nih.mipav.model.file.FileMinc: The location, in bytes, of the image data in the minc file being written out.
imgBLHC_A - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgBLHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgBLHC_R - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgBLHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgBLHC_S - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgBLHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgBRHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 182 Bottom Right Hand Corner Anterior.
imgBRHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 178 Bottom Right Hand Corner Right.
imgBRHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 186 Bottom Right Hand Corner Superior.
imgBSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: The size, in voxels, of the mask.
imgBuf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgBuf2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: imgBuffer that hold pixel value for the 2D slice.
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: imgBuffer that hold voxel value for the 3D slices.
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: imgBuffer that hold pixel value for the 2D slice.
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: imgBuffer that hold voxel value for the 3D slices.
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
imgBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
imgBuffer - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
imgBuffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
imgBuffer2 - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgBufferI - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgBufferI2 - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgCtrA - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 134 Anterior(i.e.
imgCtrR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 130 Right (i.e.
imgCtrS - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 138 Superior(i.e.
imgDBuffer - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgDBuffer - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imgDBuffer2 - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgDBufferI - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgDBufferI2 - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
imgDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
imgdirpath - Variable in class gov.nih.mipav.model.file.FileJPEG2000.img_fol_t: The directory path of the folder containing input images
imgEXTENSIONS - Static variable in class gov.nih.mipav.model.file.FilePARREC
imgEXTENSIONS - Static variable in class gov.nih.mipav.model.file.FileSpar
imgExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: The dimensions of the both source and destination images.
imgExtents - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
imgExtents - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
imgHdrExamNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 8 - Read as unsigned short.
imgHdrSeriesNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 10.
imgHdrSuiteID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 0 - 4 bytes - suite ID.
imgHeight - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
imgHeight - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
imgHessianAlgor - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
imgIdx - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch
ImgIterator(P) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator: Creates a new ImgIterator over the image of the specified pixel.
imgLBuffer - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgLBuffer - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imgLBuffer2 - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
imgLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
imgLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgLength2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgLevel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 654 Level value.
imgLoc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 126.
imgModality - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
imgMonitorFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: Frame that monitors the registered images.
imgName - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: The original image name.
imgOrient - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgOrientation - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
imgOrigin - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
imgPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
imgPCycle - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 246 Images per cardiac .1 cycle.
ImgReaderRAW - Class in gov.nih.mipav.model.file.rawjp2: This class implements the ImgData interface for reading 16 bit unsigned data from a binary RAW file.
ImgReaderRAW(ModelImage) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW
ImgReaderRAW(File) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Creates a new PGM file reader from the specified file.
ImgReaderRAW(RandomAccessFile) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Creates a new PGM file reader from the specified RandomAccessFile object.
ImgReaderRAW(String) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Creates a new PGM file reader from the specified file name.
ImgReaderRAWColorSlice - Class in gov.nih.mipav.model.file.rawjp2
ImgReaderRAWColorSlice(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
ImgReaderRAWColorSlice(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
ImgReaderRAWColorSlice(File, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
ImgReaderRAWColorSlice(RandomAccessFile, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
ImgReaderRAWColorSlice(String, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
ImgReaderRAWSlice - Class in gov.nih.mipav.model.file.rawjp2: This class implements the ImgData interface for reading slices of 16 bit unsigned data from a 3D RAW image file.
ImgReaderRAWSlice(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
ImgReaderRAWSlice(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
ImgReaderRAWSlice(File, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Creates a new PGM file reader from the specified file.
ImgReaderRAWSlice(RandomAccessFile, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Creates a new PGM file reader from the specified RandomAccessFile object.
ImgReaderRAWSlice(String, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Creates a new PGM file reader from the specified file name.
imgRes - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileCZI: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
imgResols - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
imgResolution - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
imgrx - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 110 - image from which prescribed.
imgSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size, in voxels, of the volume.
imgSize - Variable in class gov.nih.mipav.model.file.FileMinc: The size of the image data that will be written out, in bytes.
ImgSpliterator(int, int, int, Supplier) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator: Constructs a new ImgSpliterator for the specified index range
imgSubTarPairs - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
imgTLHC_A - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTLHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTLHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 158 Top Left Hand Corner Anterior.
imgTLHC_R - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTLHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTLHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 154 Top Left Hand Corner Right.
imgTLHC_S - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTLHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTLHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 162 Top Left Hand Corner Superior.
imgTRHC_A - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTRHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTRHC_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 170 Top Right Hand Corner Anterior.
imgTRHC_R - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTRHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTRHC_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 166 Top Right Hand Corner Right.
imgTRHC_S - Variable in class gov.nih.mipav.model.file.FileGESigna4X
imgTRHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
imgTRHC_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 174 Top Right Hand Corner Superior.
imgType - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
imgType - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
imgWidth - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
imgWidth - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
imgWindow - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 652 Window value.
ImgWriterRAW - Class in gov.nih.mipav.model.file.rawjp2: This class extends the ImgWriter abstract class for writing JP2 3D files.
ImgWriterRAW(ModelImage, BlkImgDataSrc, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
ImgWriterRAW(File, BlkImgDataSrc, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Creates a new writer to the specified File object, to write data from the specified component.
ImgWriterRAW(String, BlkImgDataSrc, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Creates a new writer to the specified file, to write data from the specified component.
ImgWriterRAWColor - Class in gov.nih.mipav.model.file.rawjp2
ImgWriterRAWColor(ModelImage, BlkImgDataSrc, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
ImgWriterRAWColor(File, BlkImgDataSrc, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
ImgWriterRAWColor(String, BlkImgDataSrc, int, boolean) - Constructor for class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
imin - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
IMM - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
IMN - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
iMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 298 Imaging mode.
IMP_GINI - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
IMP_GINI_CORRECTED - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
IMP_NONE - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
IMP_PERM_BREIMAN - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
IMP_PERM_LIAW - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
IMP_PERM_RAW - gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
implement - Variable in enum gov.nih.mipav.view.ViewJSlider.SliderType
implementationClass - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
implementationVersion - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
IMPLICIT - gov.nih.mipav.model.file.FileInfoDicom.VRtype: Used to indicate that the DICOM tags are implicit (i.e.
IMPLICIT_LITTLE_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil: Static that defines IMPLICIT_LITTLE_ENDIAN.
ImplicitSchurComplement(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
ImplicitSchurComplementTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
ImplicitSchurComplementTestSchurMatrixValuesTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
ImplicitSchurComplementTestSchurMatrixValuesTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
impliedFlagBytes - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
IMPORT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
importance - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.computeTreePermutationImportanceInThread
importance_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
importance_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
importance_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
ImportanceMode() - Constructor for enum gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode
importArrays(float[], float[], float[], int) - Method in class gov.nih.mipav.model.structures.VOIBase: Imports new position values into this contour.
importArrays(float[], float[], int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Import points into the contour.
importArrays(int[], int[], int[], int) - Method in class gov.nih.mipav.model.structures.VOIBase: Imports new position values into this contour.
importComplexData(int, float[], float[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import Complex data (in 2 float units) into data array.
importCurve(float[], float[], float[]) - Method in class gov.nih.mipav.model.structures.VOI: Imports a new curve into this voi.
importCurve(int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.VOI
importCurve(VOIBase) - Method in class gov.nih.mipav.model.structures.VOI: Imports the curve into the VOI.
importCurve(Vector3f[]) - Method in class gov.nih.mipav.model.structures.VOI: Imports the curve into the VOI, testing for which type.
importData - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
importData(float[], int, int) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: For AAM model only, import buffer to the simple image data.
importData(int, boolean[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import boolean data into data array.
importData(int, byte[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import byte data into data array.
importData(int, double[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import double data into data array.
importData(int, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import float data into data array.
importData(int, int[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import integer data into data array.
importData(int, long[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import long data into data array.
importData(int, short[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import short data into data array.
importData(int, Number[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import Number data into data array.
importData(int, BitSet, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import boolean (BitSet) data into data array.
importData(Object) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import Object.
importData(JComponent, Transferable) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
importData(TransferHandler.TransferSupport) - Method in class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
importDComplexData(int, double[], double[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import Complex data (in 2 double units) into data array.
importFileInfos(ModelImage, FileInfoBase[], int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Inserts the fileInfos into the specified position.
importFromMask() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: import from Mask.
importFromVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: import from VOI.
importImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: image taken from the frame to be imported:.
importImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: image taken from the frame to be imported:.
importImage(int[]) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Creates a Image object from an array of ints that have been formatted (packed) properly (ie, aRGB).
importImage(int[]) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Creates a Image object form an array of ints that have been formatted (packed) properly (i.e. aRGB)
importImage(int[]) - Method in class gov.nih.mipav.view.ViewJComponentBase: Creates a Image object from an array of ints that have been formatted (packed) properly (i.e. aRGB)
importImage(int[]) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Creates a Image object from an array of ints that have been formatted (packed) properly (ie, aRGB).
importImage(int[], boolean) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Creates a Image object form an array of ints that have been formatted (packed) properly (i.e. aRGB)
importImage(String) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Creates a Image object form an array of ints that have been formatted (packed) properly (i.e. aRGB)
importImageB(int[]) - Method in class gov.nih.mipav.view.ViewJComponentBase: Creates a Image object from an array of ints that have been formatted (packed) properly (i.e. aRGB) for the magnifier in image B
importImageDest(int[]) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Creates a Image object form an array of ints that have been formatted (packed) properly (i.e. aRGB)
importImageDest(int[]) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Creates a Image object form an array of ints that have been formatted (packed) properly (i.e. aRGB)
importLUT - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage
importNewVOI(int, int, VOI, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Imports just the VOIs in a slice into this VOI.
importPoint(Vector3f) - Method in class gov.nih.mipav.model.structures.VOI: Import a new point into this VOI.
importPoint(Vector3f, boolean) - Method in class gov.nih.mipav.model.structures.VOI: Import a new point into this VOI.
importPoints(Vector3f[]) - Method in class gov.nih.mipav.model.structures.VOIBase: Imports new position values into this contour.
importPolygon(Polygon, int) - Method in class gov.nih.mipav.model.structures.VOI: Imports the polygon into the VOI (must be a contour).
importPolygon(Polygon, int) - Method in class gov.nih.mipav.model.structures.VOIContour: Saves the polygon in the contour.
importRGB - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage
importRGBData(int, int, byte[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import byte data into data array.
importRGBData(int, int, float[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import float data into data array.
importRGBData(int, int, short[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Import byte data into data array.
importTags(FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Sets the tags in this tag table to match the tags contained in the tag table of a dicom file info.
importUData(int, int[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import int data into data array.
importUData(int, long[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import int data into data array.
importUData(int, short[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: import short data into data array.
importVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
importVoiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: button VOI import.
ImRegPOC - Class in gov.nih.mipav.model.algorithms.registration
ImRegPOC(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.registration.ImRegPOC
ImRegPOC(ModelImage, ModelImage, ModelImage, double, double) - Constructor for class gov.nih.mipav.model.algorithms.registration.ImRegPOC
imRegPOCAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: DOCUMENT ME!
imresizeNN(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
imResolutions - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Source Image Resolutions
imsbtree - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
imSmall - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.tImage
imSmallFlipped - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.tImage
IMTQL2(int, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
IMTQLH(int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
imtranslate(double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
imUnitsOfMeasure - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Source Image Units of Measure
IMX - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
in - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
in - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
in - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
in - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCInputStream
in - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
in - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
in - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
in - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
in - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCInputStream
in - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
in - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
in - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Where to read the data from
in - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Where to read the data from
in - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Buffered Reader for loading params *
in - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Java Scanner API.
in - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
in - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Buffered Reader for loading params *
in - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: The in.
IN_CORE_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
IN_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary can move in.
IN_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
in_place_possible - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
INACTIVE - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
INACTIVE - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
inbag_counts - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
inBetweenBooleanShapes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: tween shape s
inBounds(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
inbr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
inbr - Variable in class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t
inBuffersLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Length of the total input data (Not buffer size but total length of data ).
incbcf(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
incbd(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
incbet(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
INCBET - Static variable in class gov.nih.mipav.model.algorithms.Cephes
incbi(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
INCBI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
INCHES - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement inches.
INCHES - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement inches.
INCHES_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - inches.
incIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
incltree - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
include - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: precise if the packet has been already used (useful for progression order change)
Include - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams
Include(Integer, URI, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Include: Creates a new Include object.
include_edge(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Face
include_vertex(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Face
includeB1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
Includes(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
Includes(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
Includes(POINT, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
Includes(RECT, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
includeString - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Include: elements.
incog() - Method in class gov.nih.mipav.model.algorithms.Gamma: This code is a port of the FORTRAN routine INCOG from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 63-64.
INCOG - Static variable in class gov.nih.mipav.model.algorithms.Gamma: Compute incompete gamma functions and regularized gamma P function
incomingBuffers - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Vector of ByteBuffer's of incoming data.
INCOMPLETE - gov.nih.mipav.view.dialogs.ExitStatus: Gui has yet to exit
inCore - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
inCorePoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
incr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
increase_threshold_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
increaseFontButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
increaseTextSize(boolean) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Increases or decreases the displayed text size.
increment - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
increment - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
increment - Variable in class gov.nih.mipav.view.ViewJFrameLightBox
increment - Variable in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Increment value.
increment - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Increment value.
incremental_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
INCREMENTAL_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
incrementCommon() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem
incrementLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
incrementText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
IncrementTimeBy(String, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ExecutionSummary
incrementVOIRequestCount(String) - Method in class gov.nih.mipav.model.scripting.VOITable: Increments the count of VOI-file-open requests for a given image in the script.
incrementWeak() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem
incs - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
incSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: Increases the slice to be displayed by one and updates title frame.
incSliceEyeTracker() - Method in class gov.nih.mipav.view.ViewJFrameImage
INCST - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
IND - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ind_initialize(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
Indd - gov.nih.mipav.model.file.MetadataExtractor.FileType
indentationVOIs2D() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
independent_set_offsets_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
IndependentSetOrdering(CeresSolver.Graph<Vertex>, Vector<Vertex>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IndependentSetOrderingChain() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
IndependentSetOrderingStar() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
indeterminateProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D.intObject
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLLE.distanceIndexItem: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D.intObject: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D.intObject: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem
index - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
index - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: index of the value this pixel references
index - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.indexValue
index - Variable in class gov.nih.mipav.model.algorithms.libdt.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_node
index - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
index - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowItem
index - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.IndexedFloat
index - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
index - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueItem
index - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueItem: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileIO.LinkedNum
index - Variable in class gov.nih.mipav.model.file.FileIO.OrientStatus: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileLSM.Index: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileSTK.Index: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileSVS.Index: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
index - Variable in class gov.nih.mipav.model.file.FileTiff.Index: DOCUMENT ME!
index - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
index - Variable in class gov.nih.mipav.model.file.FileVOI.VOISortItem: DOCUMENT ME!
index - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexItem: DOCUMENT ME!
index - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Used for construction of the preview.
index - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexItem: DOCUMENT ME!
index - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
index - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Feature
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node
index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
index - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
index - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
index() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
index() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
index(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Compute the 1-dimensional index for the pixel (x,y).
index(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Compute the 1-dimensional index for the voxel (x,y,z).
Index(int) - Constructor for class gov.nih.mipav.model.file.FileSTK.Index: Creates a new Index object.
Index(int) - Constructor for class gov.nih.mipav.model.file.FileSVS.Index: Creates a new Index object.
Index(int) - Constructor for class gov.nih.mipav.model.file.FileTiff.Index: Creates a new Index object.
Index(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix.Index: Creates a new Index object.
Index(long) - Constructor for class gov.nih.mipav.model.file.FileLSM.Index: Creates a new Index object.
Index(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
Index(int, int[], short[], short[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
index_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
index_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
index_data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
index_labels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
index_labels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
index_labels - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
index_labels - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
index_seeds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
index_seeds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
index_seeds - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
index_seeds - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
index1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
index1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Triangle
index2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Triangle
index2Axial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
index2ImgA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
index3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Triangle
indexArrayArrayComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayComparator
indexArrayArrayItem(int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
indexArrayComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayComparator
indexArrayItem(int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
indexChange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
indexChange - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
indexColorATextF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Color LUT A, B textfield.
indexColorATextF - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
indexColorBTextF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Color LUT A, B textfield.
indexColorBTextF - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
indexColorTextF - Variable in class gov.nih.mipav.view.JPanelHistogram: displays the selected LUT color
indexCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Connectivity index counter.
IndexedFloat(float, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.IndexedFloat
indexedLUT - Variable in class gov.nih.mipav.model.structures.ModelLUT: Special int array where the LUT is packed with alpha in the most significant byte of the int, followed red, green, and blue.
indexedRGB - Variable in class gov.nih.mipav.model.structures.ModelRGB: DOCUMENT ME!
indexfilename - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: index file name
indexIntegerdoubleArrayComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayComparator
indexIntegerdoubleArrayItem(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
indexintintComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintComparator
indexintintItem(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
indexName - Variable in class gov.nih.mipav.model.file.FileJPEG2000
indexNestingLevel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
indexOf(Object) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
indexOf(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
indexOf(Vector<Vector<Vector3f>>, Vector3f) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
indexOf(Vector<Vector<Vector3f>>, Vector3f) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
indexPointer - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
indexRetrace - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Contour Retrace:
indexRowColItem(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
indexRowComparator() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowComparator
indexRowItem(int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowItem
indexSize - Variable in class gov.nih.mipav.model.file.FileAvi: Size of the index block in bytes.
indexTable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
indexTable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
indexValue - Class in gov.nih.mipav.model.algorithms
indexValue(int, double) - Constructor for class gov.nih.mipav.model.algorithms.indexValue
indexValueAscendingComparator() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueAscendingComparator
indexValueComparator - Class in gov.nih.mipav.model.algorithms
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.libdt.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueComparator
indexValueComparator() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.indexValueComparator
indexValueDescendingComparator() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueDescendingComparator
indexValueDescendingComparator() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.indexValueDescendingComparator
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.libdt.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueItem
indexValueItem(int, double) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.indexValueItem: Creates a new indexValueItem object.
indexValueItem(int, Vertex) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.indexValueItem
indexVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: vector stack to record the burning index.
indic - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
indic - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
indicatorBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the indicator.
indicatorProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Indicator probe branch group.
indicatorProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: The root branch group of the green indicator probe.
indicatorProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Indicator probe branch group.
indicatorProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: The root branch group of the indicator probe.
indices_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
Indics - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
IndicsInit(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
indicTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
indivMagButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: refs to indiviadual frame zooming in and out buttons.
indivMinButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: refs to indiviadual frame zooming in and out buttons.
inds_g - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
inds_gt - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
inds_h - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
inds_ht - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
inEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
inEndianess - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Endianess of the input stream.
inf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: DOCUMENT ME!
inf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
inf - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqagie indicates the kind of integration range involved inf = 1 corresponds to (bound, +infinity) inf = -1 corresponds to (-infinity, bound) inf = 2 corresponds to (-infinity, +infinity).
inf - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqagie indicates the kind of integration range involved inf = 1 corresponds to (bound, +infinity) inf = -1 corresponds to (-infinity, bound) inf = 2 corresponds to (-infinity, +infinity).
INF - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
INF - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
INF - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
inf_norm(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
inf_norm(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
INF_NORM - gov.nih.mipav.model.structures.jama.SuperLU.norm_t
INFERIOR_EDGE - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: Inferior Edge reference point.
INFERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Inferior reference point.
inferiorEdge - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
inferiorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
inferiorEdgePt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
inferiorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
inferiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
inferiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
inferiorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
inferiorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
infile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: input file name
infile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: input file name
infile - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
infile_format(String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
inFileStream - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: File input stream object.
infinityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
InflateRect(int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
inflaterStream - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
inflation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: perform inflation step and then render shapes using the average convexity colors.
inflation() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: perform inflation step and then render shapes using the average convexity colors.
info - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
info - Variable in class gov.nih.mipav.model.algorithms.Lmmin: status of minimization info is an integer OUTPUT variable that indicates the termination status of lm_lmdif as follows: info < 0 termination requested by user-supplied routine *evaluate; info = 0 fnorm almost vanishing; info = 1 both actual and predicted relative reductions in the sum of squares are at most ftol; info = 2 relative error between two consecutive iterates is at most xtol; info = 3 conditions for info = 1 and info = 2 both hold; info = 4 the cosine of the angle between fvec and any column of the jacobian is at most gtol in absolute value; info = 5 number of calls to lm_fcn has reached or exceeded maxfev; info = 6 ftol is too small: no further reduction in the sum of squares is possible; info = 7 xtol is too small: no further improvement in the approximate solution x is possible; info = 8 gtol is too small: fvec is orthogonal to the columns of the jacobian to machine precision; info =10 improper input parameters;
info - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Consistently use 1 base indexing rather than 0 based indexing
info - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Consistently use 1 base indexing rather than 0 based indexing
info() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
info(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
info(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
info(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
info(String, Object...) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
INFO - gov.nih.mipav.view.Preferences.LogLevel
INFO - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
INFO - Static variable in class gov.nih.mipav.model.file.FileSVS
INFO - Static variable in class gov.nih.mipav.model.file.FileTiff
info_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables writing of informative techniques of ESD, in case of activated JPWL
infoDialogA - Variable in class gov.nih.mipav.view.ViewJFrameImage: reference to the JDialogImageInfo for updating slice/resolutions.
infoDialogB - Variable in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
informationNode - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The information node that holds acquisition information, dicom tags, and more
inheaders - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
INIFCT(double[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
inImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
init - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
init - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
init() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: DOCUMENT ME!
init() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: DOCUMENT ME!
init() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1: Initializes local variables that are internal to tre.
init() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
init() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Initialize buffers and kernels.
init() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
init() - Method in class gov.nih.mipav.plugins.ManifestFile
init() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: Initializes GUI variables and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Initializes the dialog box to a certain size and adds the components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Initializes dialog by setting up components and placing them in dialog frame.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Initializes the dialog box to a certain size and adds the components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Initializes the dialog box to a certain size and adds the components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Set up the algorithm GUI.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Initializes the dialog box to a certain size and adds the components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: Sets up the d(Color.black);GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Initialize GUI.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Sets up GUI variables and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Initializes the GUI components and places them in the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Sets up the dialog window and makes it visible.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Build the resample dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Initializes GUI dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Initial control panel.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Initializes the dialog and adds the GUI components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient: Initialize the GUI (defaults to NOT using double data entry)
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: Initializes GUI variables and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Sets up GUI dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire: Initialized GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Initializes the GUI components and places them in dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Initializes the user-interface components of the dialog:
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Initializes the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNColors: Initializes GUI components and adds them to the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: initialize the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: initialize the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: Initializes GUI components and adds them to the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Initializes GUI components and adds them to the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: Does nothing at the moment, no dialog is created.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Initializes the GUI components and makes the dialog visible.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Build the dialog panel.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Sets up the GUI components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Initializes GuserInterface components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Sets up GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Sets up GUI dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Set up the dialog GUI.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Sets up GUI and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Initializes the GUI components and puts them in the dialog, attaching necessary actions.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Creates and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Sets up GUI and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Initializes the dialog box to a certain size and adds the components.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: makes the display frame. builds the layout.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: init
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Sets up the dialog window and makes it visible.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Sets up GUI and displays the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI
init() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach: Initializes GUI components of dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: Set up GUI parameters.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: Initializes GUI components of dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Makes the GUI elements of the dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTrim: Makes slider to set opacity of VOI.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Sets up GUI dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Initializes GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Sets up GUI components - buttons, checkboxes, sliders, etc.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Sets up GUI components and displays dialog.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Creates a JFrame asking if the user is a developer and then runs the method displayReportForm, which displays the appropriate form for the selected type.
init() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Initialize the HyperGraph visualization.
init() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
init() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
init() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Initialize the control panel.
init() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Initialize the buttons layout.
init() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Initializes capabilities and temporary variables.
init() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Creates the scene graph and initializes the SimpleUniverse and the Viewing transformations.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Initialize the user-interface, buttons and ActionCommands.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Initializes the GUI components and displays the control panel.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Initilize the mainPanel with the geodesic drawing buttons.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Initializes the interface, and generates the first default texture.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Initializes wake up events.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Initializes wake up events.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Initialize the the frame layout.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Setup the initial image scene graph structure.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Initialize the CoolTip probe geometry shape.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Initialize the probe geometry shapes.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Initialize the whole probe panel control layout.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Create image scene graph.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Initialize the regular probe geometry shape.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Initialize the therml probe's geometry shapes and indictor probe's geometry shapes.
init() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint
init() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Build the resample dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Initialize the user-interface, buttons and ActionCommands.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: init
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: init
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: init
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Initializes the GUI components and displays the dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: User-interface intialization.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Initializes the GUI components and displays the control panel.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Initialize the mainPanel with the geodesic drawing buttons.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Initializes GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Initializes the interface, and generates the first default texture.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D: Initializes the GUI components.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Initialize user-interface
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Init() function to create the GUI dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: GUI panel initialization.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Dialog GUI initialization.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Dialog GUI interface initialization.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Create the dialog interface.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Create the dialog interface.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: Initial panel
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Sets up GUI and displays the dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Sets up GUI and displays the dialog.
init() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
init() - Method in class gov.nih.mipav.view.ViewImageDirectory: Initializes the GUI components and adds them to the main frame.
init() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
init() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
init() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Initializes scroll panes, tables, and models and adds them to the frame.
init() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Creates the GUI.
init() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Initialize the the image orientations and call the frame layout method 'configureFrame()'.
init() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
init(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Creates and displays dialog.
init(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Initialize GUI for the bug report form.
init(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Builds the panel that the tag dialog frame contains, and optionally builds the standalone frame that encompasses all functionality of this class.
init(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Creates and displays dialog.
init(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
init(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
init(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Initializes GUI components.
init(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Initialize the buttons layout.
init(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
init(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Initializes GUI based on whether this is the pixel or degree dialog.
init(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Initializes GUI based on whether this is the pixel or degree dialog.
init(boolean, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Initializes GUI components based on the type parameter..
init(double) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
init(double) - Method in class gov.nih.mipav.util.DoubleDouble
init(double, double) - Method in class gov.nih.mipav.util.DoubleDouble
init(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
init(float) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Makes slider to set opacity of VOI.
init(float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom: DOCUMENT ME!
init(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
init(int) - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
init(int) - Method in class gov.nih.mipav.model.file.FileSVS.ModREADInputStream
init(int) - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
init(int) - Method in class gov.nih.mipav.model.file.FileTiff.ModREADInputStream
init(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: The JDialogDTIInput interface.
init(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogOrder: Creates and displays dialog.
init(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness: Initializes GUI components and displays dialog.
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
init(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Part of the GLEventListener interface.
init(StochasticForests.Data, int, int, int, long, Vector<Integer>, Vector<Integer>, Vector<Double>, StochasticForests.ImportanceMode, int, boolean, boolean, StochasticForests.SplitRule, Vector<Double>, boolean, Vector<Double>, double, double, boolean, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
init(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
init(ModelImage, VolumeTexture) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Initialize the scene graph node for the rendering of the volume data, everything except the textures from the volume data to be applied to the slices through the volume.
init(ModelLUT, Dimension, boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: Initializes the frame and variables.
init(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
init(Point3, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
init(ViewJProgressBar, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Initialize the VolumeImage with the ModelImage data.
init(ViewJProgressBar, VolumeCanvas3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Initialize the renderer.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Initializes the dialog box and adds the components.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Initializes the dialog box to a certain size and adds the components.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Initializes the dialog box to a certain size and adds the components.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Initializes the dialog box and adds the components.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents: Makes slider to set opacity of VOI.
init(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Initializes the dialog box to a certain size and adds the components.
init(String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction: Initializes the dialog box and adds the components.
init(String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Initializes the dialog box and adds the components.
init(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Initializes the dialog box to a certain size and adds the components.
init(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Initializes the dialog box to a certain size and adds the components.
init(String) - Method in class gov.nih.mipav.view.ViewJSlider: Init method that creates slider
init(String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Initializes GUI components and displays dialog.
init(String, StochasticForests.MemoryMode, StochasticForests.Data, int, String, int, long, int, StochasticForests.ImportanceMode, int, String, boolean, boolean, Vector<String>, boolean, StochasticForests.SplitRule, boolean, Vector<Double>, double, double, boolean, StochasticForests.PredictionType, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
init(URL[], ClassLoader, URLStreamHandlerFactory) - Method in class gov.nih.mipav.plugins.JarClassLoader
init(Vector<String>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
init(BranchGroup, BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Initialize the scene graphs and left, right, and stereo canvases for this JStereoWindow.
init(JButton, JButton, ArrayList<Integer>, Color[], ModelLUT, ModelImage, int, Vector<Integer>) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
init(JFrame, ModelImage, ModelImage, Component, ScreenCoordinateListener, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Initialize the VOIManager.
Init() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
Init() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Initializes the ShaderEffect vertex and pixel shader programs.
Init(double[], int, int, CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
Init(double[], Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
Init(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ScratchEvaluatePreparer
Init(int[][], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
Init(int, boolean, CeresSolver.CompressedRowBlockStructure) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
Init(int, boolean, CeresSolver.CompressedRowBlockStructure) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase
Init(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
Init(CeresSolver.BlockSparseMatrix, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
Init(CeresSolver.MinimizerOptions, double[], CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
Init(CeresSolver.Program, HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
Init(CeresSolver.SolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
Init(IDList, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
Init(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
INIT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
init_Affine(SIFT3D.Affine, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
init_alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
init_cl_SIFT3D(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_error_limit(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
init_events(TURN_REP, TURN_REP) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
init_Gauss_filter(SIFT3D.Gauss_filter, double, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Gauss_incremental_filter(SIFT3D.Gauss_filter, double, double, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_geometry(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_grad - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
init_grad - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt
init_GSS_filters(SIFT3D.GSS_filters) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_im(SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Keypoint(SIFT3D.Keypoint) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Keypoint_store(SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Mat_rm(SIFT3D.Mat_rm, int, int, SIFT3D.Mat_rm_type, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Mat_rm_p(SIFT3D.Mat_rm, double[][], int, int, SIFT3D.Mat_rm_type, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Mesh(SIFT3D.Mesh) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_multiple_dt(libdt.DytexMix) - Method in class gov.nih.mipav.model.algorithms.libdt
init_num_of_subclasses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
init_pattern() - Method in class gov.nih.mipav.model.algorithms.AgastDetector5_8
init_pattern() - Method in class gov.nih.mipav.model.algorithms.OastDetector9_16
init_Pyramid(SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Ransac(SIFT3D.Ransac) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Reg_SIFT3D(SIFT3D.Reg_SIFT3D) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_rows_cols(int, int, int, int, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
init_scoring(int, int, int, int, int[], int[], double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
init_Sep_FIR_filter(SIFT3D.Sep_FIR_filter, int, int, double[], int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_SIFT3D(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_SIFT3D_Descriptor_store(SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_Slab(SIFT3D.Slab) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
init_source(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
init_vals(TURN_REP, TURN_REP, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
initAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: All of this stuff was being done in the constructor...why?
initAlignTo(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Init ref to this.
initAlignTo(CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Aligns this to 'ref' with respect to pose.
initAxes() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Initializes the Axis labels based on the ModelImage orientation.
initBlankPaint(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Initializes a new blank paint mask to the color indexed by the parameter 'num'
initBlendSliderLabels() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Initialize the blend slider labels.
initBlendSliderLabels() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Initialize the blend slider labels.
initBlock() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
initBlock() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
initBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Initializes the bounding box for the mesh.
initBuffers() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Initializes the buffers that hold the image data.
initBuffers() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Initializes the buffers that hold the image data.
initCameraModelList() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur
initCenterPoint - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Either the volume's center of mass or a user indicated point depending on the value of useCenterOfMass.
initCenterX - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Used to denote the brain's center of mass y-coordinate.
initCenterXLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Label for the x-coordinate of the user-defined center.
initCenterXTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: An optional field for denoting a desired initial x-corrdinate for the mesh.
initCenterY - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Used to denote the brain's center of mass y-coordinate.
initCenterYLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Label for the y-coordinate of the user-defined center.
initCenterYTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: An optional field for denoting a desired initial y-corrdinate for the mesh.
initCenterZ - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Used to denote the brain's center of mass y-coordinate.
initCenterZLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Label for the z-coordinate of the user-defined center.
initCenterZTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: An optional field for denoting a desired initial z-corrdinate for the mesh.
initChildren() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
initCL(long, GL3) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
initClass() - Static method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
initClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the arbitrary clipping bounding frame to initial position.
initClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the static clipping bounding frame to initial position.
initClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the static inverse clipping bounding frame to initial position.
initClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the X clipping bounding frame to initial position.
initClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the X Invative clipping bounding frame to initial position.
initClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the Y clipping bounding frame to initial position.
initClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the Y Nagative clipping bounding frame to initial position.
initClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the Z clipping bounding frame to initial position.
initClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Move the Z Invative clipping bounding frame to initial position.
initcluster_doretto(Vector<libdt.Mat>, libdt.DytexOptions) - Method in class gov.nih.mipav.model.algorithms.libdt
initColorMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
InitColorMap(Texture, GraphicsImage, ModelStorageBase, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Initialize the textures for the color lookup table.
initColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Initializes the colors for the first point on the curve, and the successive points.
initColors() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Initializes the colors for the first point on the curve, and the successive points.
initComponentImage() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Construct the component image which contains the MIP image (should be called after calcMIPBuffer).
initComponentImage(int[]) - Method in class gov.nih.mipav.view.ViewJFrameImage: Creates and initializes the component image for the given image.
initConstraints() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Initializes the constraint variables for the PSF deconvolution, based on the microscope parameters (numerical aperature, wavelength, and refractive index).
initConstraints() - Method in class gov.nih.mipav.view.components.PanelManager: Create a new set of grid bag constraints.
initControls() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Initializes the GUI components and displays the dialog.
initCpp(String, StochasticForests.MemoryMode, String, int, String, int, boolean, long, int, String, StochasticForests.ImportanceMode, int, String, Vector<String>, String, boolean, Vector<String>, boolean, StochasticForests.SplitRule, String, boolean, double, double, double, boolean, StochasticForests.PredictionType, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
initCreateMemoryUsagePanel() - Method in class gov.nih.mipav.view.ViewUserInterface: Construct the panel which displays the current memory usage/limit and a garbage collection button.
initCreateMessageBar() - Method in class gov.nih.mipav.view.ViewUserInterface: Create the panel containing components which show the application title initially, and will later be used to show image coordinates and intensities.
initCreateMessageField(String) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates the message field for the main frame using the title given.
initCreateMultiCoreGpuIndicatorPanel() - Method in class gov.nih.mipav.view.ViewUserInterface: Construct the panel which displays whether the CPU and GPU could be utilized by algorithms based on the preferences settings by the user.
initCube(GaussianMixtureModelsIncompleteSamples.GMM, double, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
InitCubicTextures() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Create the rotation control cubic box.
initData() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Allocates local memory.
initData() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: initData -- Initializes the selected, open, reference and tile indexes.
initDataBuffer() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
initDebugPreferences() - Static method in class gov.nih.mipav.view.Preferences: this method must be invoked very early on in the startup sequence (typically in the startup main method or ViewUserInterface.
initDicomReceiver() - Method in class gov.nih.mipav.view.ViewUserInterface: Starts the DICOM receiver if the flag in the preference file is true.
initDir - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
initDirection() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Makes the GUI elements of the dialog.
initDisplayAnnotationsPanel(VOILatticeManagerInterface, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice: The annotations panel is added to the VolumeTriPlanarInterface for display.
initDisplayAnnotationsPanel(VOILatticeManagerInterface, VolumeImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations: The annotations panel is added to the VolumeTriPlanarInterface for display.
initDisplayAnnotationsPanel(VOILatticeManagerInterface, VolumeImage, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations: The annotations panel is added to the VolumeTriPlanarInterface for display.
initDisplayCurvesPanel(VOILatticeManagerInterface, VolumeImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves: The curve panel is added to the VolumeTriPlanarInterface for display.
InitEliminator(CeresSolver.CompressedRowBlockStructure) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
initer - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
initer - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
initer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
initer - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
initExtents(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Get the extents of an image.
initExtentsVariables(ModelImage) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Initializes the variables based on the image extents.
initExtentsVariables(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Initializes the variables based on the image extents.
initExtentsVariables(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage: Initializes the variables based on the image extents.
initEyeTrackingLogfile(String) - Static method in class gov.nih.mipav.view.MipavUtil: Initialize the file IO for eye tracking log file
initEyeTrackingLogfile(String, ViewJComponentEditImage) - Static method in class gov.nih.mipav.view.MipavUtil: Initialize the file IO for eye tracking log file
initFaceIMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
initFrame(Dimension) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Initializes the 2D MIP image frame.
initFromDataAtRandom(GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double, int[], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
initFromDataMinMax(GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double, int[], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
initFromKMeans(GaussianMixtureModelsIncompleteSamples.GMM, double[][], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
initGB() - Static method in class gov.nih.mipav.view.dialogs.GuiBuilder
initGB() - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
initGB() - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
InitGPU() - Static method in class gov.nih.mipav.util.MipavInitGPU
InitGraph(METIS.graph_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
initGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
initGUI() - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: Construct the panel's GUI.
initGUI() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Initialize the panel's GUI.
initGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Construct the dialog interface.
initGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Initializes the dialog box and adds the components.
initGUI() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: initGUI - Initializes GUI toolbar and buttons and displays the registration window.
initGUI() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Construct the panel.
initGUI() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Set up the panel components.
initGUI(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Initializes the panel's GUI.
initGUI(int, boolean, String) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Initialize the Sigma Panel
initHash(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
InitHessUnFac(double, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: intialize the hessian Algorithm A9.4.3 p. 359
initial - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
initial - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
initial - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task
initial - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
initial - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
initial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Rotations, translations, scales, and skews that make up transformation.
initial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Rotations, translations, scales, and skews that make up transformation.
initial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem: Rotations, translations, scales, and skews that make up transformation.
initial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem: Rotations, translations, scales, and skews that make up transformation.
initial - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Rotations, translations, scales, and skews that make up transformation.
initial - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
initial - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
INITIAL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: DOCUMENT ME!
initial_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
initial_cost - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
initial_evaluator_jacobian_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
initial_evaluator_residual_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
initial_lambda - Variable in class gov.nih.mipav.model.algorithms.LsqFit
initial_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
initial_setup(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
initial_trust_region_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
initial_x - Variable in class gov.nih.mipav.model.algorithms.LsqFit
initialActiveVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
InitialAntiCausalCoefficient(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
InitialCausalCoefficient(double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
initialCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
initialCirclesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
initialCirclesText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
initialCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
initialCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
initialCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
initialCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
initialData() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
initialDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
initialDeltaB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
initialDeltaG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
initialDeltaR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
initialEllipsesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
initialEllipsesText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
initialGlobalSmoothing - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
initialGlobalSmoothing - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: 0.8 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
Initialise(AlgorithmNetworkSnake.SnakeInitialiser, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
initialiseCRC() - Method in class gov.nih.mipav.model.file.CRC
InitialiseData() - Method in interface gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.IMetadataProvider
InitialiseData() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
initialiseDataHolders(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: DOCUMENT ME!
InitialiseDenseReference() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
InitialiseSparseMatrixReferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
initialization(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
initialization(double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
initialization(double[][], AlgorithmMixGaussEM.model) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
initialize() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
initialize() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Sets up the GUI (panels, buttons, etc) and displays it on the screen.
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Implementation of the Behavior abstract method.
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Required to be a ViewPlatformBehavior.
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Required to be a ViewPlatformBehavior.
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Initializes the behavior.
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: DOCUMENT ME!
initialize() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: DOCUMENT ME!
initialize(boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Sets up the GUI (panels, buttons, etc) and displays it on the screen.
initialize(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Initialization of the 2D fast marching object.
initialize(int, int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Partial initialization of the fast marching object.
initialize(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Initialization of the 3D fast marching object.
initialize(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
initialize(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
initialize(ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
Initialize(ModelSimpleImage, CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: General initialization function.
Initialize(ModelSimpleImage, CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Performs a somewhat brute force initialization of an AAM.
Initialize(ModelSimpleImage, CAAMShape, CDVector, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Performs a somewhat brute force initialization of an AAM.
initialize_data_precision(int) - Method in class gov.nih.mipav.model.file.libjpeg
InitializeContext(CeresSolver.Context, CeresSolver.Context, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
initialized_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
InitializeData(int, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
initializeDisplayImages(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1: This method initializes the final images as near-clones of the largest image in the set
initializeEncodeSkip(byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Calculate the encoding of the specified channel.
initializeErrorLogging(String) - Static method in class gov.nih.mipav.view.LogStdStreams: The static initialization method
Also redirects System.out, rewrites output file.
initializeErrorLogging(String, String) - Static method in class gov.nih.mipav.view.LogStdStreams: The static initialization method which writes heading
Also redirects System.out, rewrites output file.
initializeErrorLogging(String, String, boolean) - Static method in class gov.nih.mipav.view.LogStdStreams: The static initialization method which writes heading
Rewrites output file.
initializeErrorLogging(String, String, boolean, boolean) - Static method in class gov.nih.mipav.view.LogStdStreams: The static initialization method.
initializeFullRead() - Method in class gov.nih.mipav.model.file.FileDicomBase: Setups the allocation of memory for the byte buffer to load the entire image.
initializeGeodesic(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: initializeGeodesic copies the triangle mesh and initializes the data structures for Dijkstra's Single-Source shortest path algorithm.
initializeGeodesic(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: initializeGeodesic copies the triangle mesh and initializes the data structures for Dijkstra's Single-Source shortest path algorithm.
initializeGui() - Method in class gov.nih.mipav.view.ViewUserInterface: Initializes the user interface.
initializeHeap() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: Allocate the heap and initialize all the heap elements.
initializeImages(int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: create an image pyramid from the original data, initialize Jacobians, etc
initializeImages2D(int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: create an image pyramid from the original data, initialize Jacobians, etc
initializeImageTable(MouseListener) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
initializeInterpolation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
initializeLayout() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the basic layout and adds it to the content pane.
initializeLocalImages(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
initializeLocalImages(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1: This method initializes the intermediate images as a near-clone of the largest image in the set.
initializeNelderMead(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
initializeOutput() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
initializeSeriesTable(MouseListener) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
initializeSpeed(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Partial initialization of the fast marching object.
initializeSpeed(float[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Partial initialization of the fast marching object.
initializeStringTable() - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Initialize the string table.
initializeStudyTable(MouseListener) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
initializeTransform(int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: initialize the transform from previous estimate, if exists
initializeTransform2D(int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: initialize the transform from previous estimate, if exists
initialJacobianIdentity - Variable in class gov.nih.mipav.model.algorithms.NESolve
initialKernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The kernel must be initialKernelSize by initialKernelSize
initialKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
initialMesh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
initialMessage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
initialMessage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
initialOrder - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
initialOrder - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
initialOrder - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
initialOrder - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
initialOrder - Variable in class gov.nih.mipav.model.algorithms.Bessel: order of initial function.
initialOrder - Variable in class gov.nih.mipav.model.algorithms.BesselEP: order of initial function.
initialRandomCircles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
initialRandomCircles - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
initialRandomEllipses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
initialRandomEllipses - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
initialRandomSpheres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
initialRandomSpheres - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
initialSideLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
initialSideLength - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
initialSpheresLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
initialSpheresText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
initialSummaryBins - Variable in class gov.nih.mipav.view.ViewJFrameGraph
initialThresholdLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
initialTitle - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
initialUserMax - Variable in class gov.nih.mipav.view.ViewJFrameGraph
initialUserMin - Variable in class gov.nih.mipav.view.ViewJFrameGraph
initialV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
initialValidate(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method that does some initial validation of the expression
initialVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
initialWeightsRangeLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
initImage(ViewJFrameImage) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Initialize the HyperGraph interface based on the ViewJFrameImage parent.
initImageBuffer(int[], boolean) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Create the intensity buffer for an image.
initImageBuffer(int[], boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Create the intensity buffer for an image.
initImageBuffer(int[], boolean, int) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Create the intensity buffer for an image.
initImageLUTs(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Initializes the LUTs for the images.
initImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Intializes the Textures and GraphicsImages used to render the ModelImage this VolumeImage represents.
initImages(ModelSimpleImage, ModelSimpleImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
initImagesColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
initImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
initImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
initIMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
InitIMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
initInternal(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
initInternal(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
initInternal(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
initInternal(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
initInternal(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
initLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
initLayout() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
initLayout() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
initLevelSet(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Initializes the Levelset VOI calculation.
initLineMin(Matrix4f, Matrix4f, float, float, double[], double[], int, double[], double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
initLiveWire(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Initializes the Livewire VOI calculation.
initLowerSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Construct the lower intensity bound slider panel.
initLUT() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Initializes or re-initializes the Histogram LUT interface based on the currently-loaded ModelImage.
initLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Initializes or re-initializes the Histogram LUT interface based on the currently-loaded ModelImage.
initLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Create a new LUT for the input image.
initLUT() - Method in class gov.nih.mipav.view.ViewJFrameImage: Creates and initializes the LUT for the first image (imageA) if it hasn't been already.
initLUT(ModelImage) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Creates and initializes the LUT for an image.
initLUT(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Creates and initializes the LUT for an image.
initLUT(Texture[], ModelLUT, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
initMacintoshJDKversionCheck() - Method in class gov.nih.mipav.view.ViewUserInterface: Method checks to verify that when running on a Machintosh, the JDK version is at least 1�x2e;4.
initMaterialPreset() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Up to 6 preset materials can be defined.
initMaterialPreset() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Up to 6 preset materials can be defined.
initMaxPreview() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
initMinPreview() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
initNewLine() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
initNewLine() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
initNumSlices(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Get the total number of time slices and volume slices.
initNumSlices(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Get the total number of time slices and volume slices.
initNumSlices(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Get the total number of time slices and volume slices.
InitOpacityMap(ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Initialize the GraphicsImage for the opacity lookup table.
initPanel() - Method in class gov.nih.mipav.view.components.PanelManager: Create a new panel.
initParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
InitPartTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
initPixelBuffer(int[]) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Create the pixel buffer for an image.
initPixelBuffer(int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Create the pixel buffer for an image.
initPixelBuffer(int[]) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Create the pixel buffer for an image.
initPolyhedronTrimeshConnectivity(int, int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Called by the constructor to add the relative control point offset indices for triangle mesh representation of the bounding polyhedron formed by the neighboring 26 control points.
initPrefsFile() - Method in class gov.nih.mipav.view.ViewUserInterface: Set the preferences file to use (Preferences defaults to mipav.preferences).
initPrefsTrim() - Method in class gov.nih.mipav.view.ViewUserInterface: Gets the TRIM_VOI, TRIM_MASK and TRIM_FLAG values from the preferences file, and if it cannot find them, it sets to some default value: TRIM_VOI will be 0.3, TRIM_MASK will be 0.0, and TRIM_FLAG will be true.
initPresets() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Initializes the GUI components, based on the preset values set by the class calling the constructor.
initProgressBar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Initializes progress bar.
initProgressBar() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Initializes the progress bar.
initPSF(int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Initialize the first PSF guess as a 3x3 Gaussian.
initR(String, StochasticForests.Data, int, int, boolean, long, int, StochasticForests.ImportanceMode, int, Vector<Vector<Double>>, Vector<String>, String, boolean, boolean, Vector<String>, boolean, StochasticForests.SplitRule, Vector<Double>, boolean, boolean, Vector<Double>, double, double, boolean, StochasticForests.PredictionType, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
InitRandom(int) - Method in class gov.nih.mipav.model.structures.jama.METIS
initResFactor(float[], int[]) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Get the resolution correction needed for non-isotropic images.
initResFactor(float[], int[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Get the resolution correction needed for non-isotropic images.
initResFactor(float[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Get the resolution correction needed for non-isotropic images.
initResFactor(float[], int[]) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Get the resolution correction needed for non-isotropic images.
initResolutions() - Method in class gov.nih.mipav.view.ViewJFrameImage: Initializes the resolutions and units from the image.
initResolutions(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: init resolutions
initResolutions(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: init resolutions
initResolutions(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: DOCUMENT ME!
initRGB(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Creates and initializes the ModelRGB for an image.
initRGB(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Creates and initializes the ModelRGB for an image.
initRGB(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Creates and initializes the ModelRGB for an image.
InitScale() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Initialize the scale factors.
initSegm - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
initSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
initSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
initSetMainFrameDefaults(LayoutManager, boolean) - Method in class gov.nih.mipav.view.ViewUserInterface: Sets the layout of the Main Frame with the given, preferred layout manager; makes the main frame resizable as given; makes this class a window-listener; sets the default operation to do nothing on close; and the icon is set.
initSetTitles(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface: Sets the titles for for the main frame and the application using the strings given.
initShared(VolumeTriPlanarInterface) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
initSlicePositions(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Get the initial time and volume slice positions.
initSlicePositions(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Get the initial time and volume slice positions.
initSlicePositions(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Get the initial time and volume slice positions.
initSnakeConstants(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Initializes the H, G, and Q matrices once per image sequence on the first frame.
initSphere() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Initialize the sphere scene graph objects for the sphere showing where the user clicked in the surface.
initSphereBranch() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Initialize the red sphere image scene graph structure.
InitStorage(CeresSolver.CompressedRowBlockStructure) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSchurComplementSolver
InitStorage(CeresSolver.CompressedRowBlockStructure) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
initSubset() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
initSurfaceBuffers() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Initialize the global vertext and connection arrays.
InitT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
initTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
initTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
initTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
initTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
InitTimers(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS: This function clears the timers
initToolbar() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Create a blank toolbar and set it up.
initToolbar() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Construct the dialog toolbar (including zoom, lut, and paint clearing tools).
initToolBar() - Static method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a blank toolbar and set it up.
initToVOIType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
initTreeLoc - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
initUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
initUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
initUnits(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: init units
initUnits(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: init units
initUnits(ModelImage) - Static method in class gov.nih.mipav.view.ViewJFrameBase: DOCUMENT ME!
initUpperSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Construct the upper intensity bound slider panel.
initUsingPreferences() - Method in class gov.nih.mipav.view.ViewUserInterface: Performs a variety of start-up operations based on user-preferences; First, it tries to read from the preferences file; if it cannot, it sets the user directory.
InitV() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
initVars() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Initializes the variables (resolutions) needed for the algorithm.
initVars() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Initializes the variables (resolutions) needed for the algorithm.
initVertexIMark() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
initView(Point3f, SoftwareVertexProperty) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the view direction based on the vertex and the eye point (in model coordinates).
initVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
initVOI() - Method in class gov.nih.mipav.view.ViewJFrameImage: Initialize the 3D VOI interface.
initVOI() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
initVOI() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
initVOI() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Initialize the 3D VOI interface.
initVOIManagers(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
initVOIManagers(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
initVolumeData(ModelImage, int, Texture, String, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
initVolumeSculptor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Initialize the Mouse listener.
initVolumeSculptor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Initialize the Mouse events, store the progress bar, and get the original canvas widths.
initVR(int, int, byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Initializes the VR.
initWinLevelGray(ModelLUT, ModelImage) - Method in class gov.nih.mipav.view.WindowLevel: initWinLevelGray, initializes the ModelLUT for gray-scale images before window-level operations.
initWinLevelRGB(ModelRGB, ModelImage) - Method in class gov.nih.mipav.view.WindowLevel: initWinLevelRGB, initializes the ModelRGB for window-level changes.
initZoom() - Method in class gov.nih.mipav.view.ViewJFrameImage: Initializes the zoom variables for the first image (imageA).
initZoom(ModelImage, float, float, int, int) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Initializes the zoom variables for an image.
initZoomFactor - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
INK_NAMES - Static variable in class gov.nih.mipav.model.file.FileSVS
INK_NAMES - Static variable in class gov.nih.mipav.model.file.FileTiff
INK_SET - Static variable in class gov.nih.mipav.model.file.FileSVS
INK_SET - Static variable in class gov.nih.mipav.model.file.FileTiff
inkNames - Variable in class gov.nih.mipav.model.file.FileSVS
inkNames - Variable in class gov.nih.mipav.model.file.FileTiff
inkSet - Variable in class gov.nih.mipav.model.file.FileSVS
inkSet - Variable in class gov.nih.mipav.model.file.FileTiff
inMax - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
inMenu - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
inMin - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Parameter used in Find_Edges.
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
INNER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Parameter used in Find_Edges.
inner_iteration_minimizer - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
inner_iteration_minimizer - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
inner_iteration_ordering - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
inner_iteration_ordering_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
inner_iteration_ordering_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
inner_iteration_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
inner_iteration_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
inner_iteration_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
inner_iteration_x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
inner_iterations_are_enabled_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
inner_iterations_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
inner_iterations_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
inner_iterations_were_useful_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
inner_max_epoch - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
inner_max_epoch_parameter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
inner_nnls_alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
inner_product - Variable in class gov.nih.mipav.model.algorithms.SVM
inner_product_hom - Variable in class gov.nih.mipav.model.algorithms.SVM
inner_productFunction(int, SVM.VlSvmDataset, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SVM
innerButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
innerButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
innerClass - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
InnerClass() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback.InnerClass
innerCurveCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
innerDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
innerDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
innerDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
innerEdging - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
innerIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
innerIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
inneriter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
innerPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
innerPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
innerPanel - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
innerPanel - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
InnerProduct(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
innerProductFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
INOQ - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
inOrder() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Prints out tree in sorted order.
inOrder() - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Prints out tree in sorted order.
inOrder(VOIManager.TreeNode, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Prints out tree in sorted order.
inOrder(RubberbandLivewire.TreeNode, int) - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Prints out tree in sorted order.
inp_minbnd(double[][], double) - Method in class gov.nih.mipav.model.algorithms.libdt
inp_minbnd(double[], double) - Method in class gov.nih.mipav.model.algorithms.libdt
inPlace - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Whether to perform alg in place
inPlanePhaseEncodingDirection - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
input - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
input - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
input(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2
input(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
INPUT_BUF_SIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
input_directory - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
input_directory - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
input_file - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
input_file_directory - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
input_file_name - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
input_file_name - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
input_file_name - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
INPUT_IMAGE_LABEL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: The label to use for the input image parameter.
INPUT_IMAGE_LABEL_BASE - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: The base of parameter labels used for an algorithm's input image(s).
input_iMCU_row - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
INPUT_LUT - Static variable in class gov.nih.mipav.model.file.FileLSM: Types of LUTS.
INPUT_PRESMOOTHING_SIGMA - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
input_scan_number - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
input1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Image used to import a slice from inputImage.
input1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Image used to import a volume from inputImage.
input1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Image used to import a slice from inputImage.
input1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Image used to import a volume from inputImage.
input2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Image used to import a slice from inputImage2.
input2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Image used to import a slice from inputImage2.
input2Bytes(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
input3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Image used to import a slice from inputImage3.
input3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Image used to import a slice from inputImage3.
inputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Holds the original image data.
inputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
inputByte(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
inputctl - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
InputDir - gov.nih.mipav.view.Argument.StaticArgument
inputEvent(InputEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
inputFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
inputFileName - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
inputFileName - Variable in class gov.nih.mipav.model.algorithms.LSCM
inputGon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The polygon of the VOI we are fitting.
inputImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
inputImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
inputImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: This is the image in which internal registration will be performed.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: This is the image in which internal registration will be performed.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: This is the image in which internal registration will be performed.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: This is the image in which internal registration will be performed.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC: This image is to registered to the reference image.
inputImage - Variable in class gov.nih.mipav.model.algorithms.SIFT3D: This image is to registered to the reference image.
inputImage2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Other images which will not determine the registration, but which will undergo the same transformations as input image.
inputImage2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Other images which will not determine the registration, but which will undergo the same transformations as input image.
inputImage3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
inputImage3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
inputImageDirectory - Variable in class gov.nih.mipav.model.file.FileJPEG2000
inputImages - Variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Vector of Strings holding the registers of images used as input
inputLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
inputLayer - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
inputMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
inputMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
inputMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Holds the original image mask data.
inputMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
inputMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
inputMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
inputMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
inputMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
inputMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
inputMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
inputMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
inputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: input panel of dialog
inputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
inputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
inputPointData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
inputRangeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
inputRanges - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: DOCUMENT ME!
inputs - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
inputs - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
inputSource - Variable in class gov.nih.mipav.view.graphVisualization.MipavSAXReader
inputTensorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: Input image for tensor estimation
inputText - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
inputType - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
inputType - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
inputType - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
inputURL - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
inputVal - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
inputw_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Image used to import a slice from inputWeight.
inputw_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Image used to import a volume from inputWeight.
inputw_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Image used to import a slice from inputWeight.
inputw_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Image used to import a volume from inputWeight.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: This gives weights for the input image - higher weights mean a greater impact in that area on the registration.
inputWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
inputWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
inputWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
inputWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
inputWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
inputWgtImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
inputWgtImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
inRange(float, float, float, JPanelPixelExclusionSelector.RangeType) - Static method in class gov.nih.mipav.view.MipavUtil: Determines if a value is within the given pixel intensity range.
inRange(JDialogProstateSegmentationRegBSpline3D.Edge, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Check whether the given x, y pixel fall withing the narrow band region.
inScript - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Denotes whether the algorithm is run in a script/JIST, if so showInterImages just stores images for later access.
insert - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Boolean indicating if the Insert button has been pressed
insert(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Insert an element into the set.
insert(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Insert an element into the set.
insert(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Insert an element into the set.
insert(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Insert an element into the set.
insert(int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: Insert a numeric value into the min-heap data structure.
insert(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Inserts node with given position and cost at the appropriate location in the tree.
insert(int, float) - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Inserts node with given position and cost at the appropriate location in the tree.
insert(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix
insert(int, int, float, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
insert(int, int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
insert(int, int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
insert(AlgorithmMeanShiftSegmentation.RAList, AlgorithmMeanShiftSegmentation.RAList[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
insert(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
insert(String, int) - Method in class gov.nih.mipav.view.JScrollMenu
insert(Action, int) - Method in class gov.nih.mipav.view.JScrollMenu
insert(JMenuItem, int) - Method in class gov.nih.mipav.view.JScrollMenu
Insert(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Adds a point to the end.
Insert(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Inserts a shape into the collection.
Insert(CAAMTriangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Adds a triangle to the end.
insert_bound(GenericPolygonClipper.edge_node[], GenericPolygonClipper.edge_node[], int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
insert_rec(KDTree.kdnode, boolean, double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.KDTree
insertAveragedSlices(float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Insert weighted averaged slices between the two indices.
insertBlank - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: If true, insert a blank rather than a weighted average.
insertBlank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: If true insert blank slices, if false insert weighted average slices.
insertBlank - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: If true, insert a blank rather than a weighted average
insertBlankSlices(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Insert blank slices between the two indices.
insertButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Button for inserting the image into the body of a bug report
InsertDataItem(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Inserts a data vector
INSERTED_IMAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Original slice type - a 2D image is inserted.
INSERTED_IMAGE_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Original volume type - a 2D image is inserted.
InsertEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex: DOCUMENT ME!
insertedImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Image inserted for slice type == ORIGINAL.
insertedImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Image inserted for slice type == ORIGINAL.
insertedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
insertedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
insertedImgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
insertElementAt(VOIBase, int) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
insertElementAt(VOI, int) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
insertEnhancedSequence(FileInfoDicom, FileInfoDicom[][], int) - Method in class gov.nih.mipav.model.file.FileIO
InsertEntry(int, int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.DynamicCompressedRowSparseMatrix
insertfftKernel(StringBuilder, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertFlythruTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert tab into the flythru tab list ( flythru render ) for backup.
insertGlobalLoadsAndTranspose(StringBuilder, int, int, int, int, int, CLFFTPlan.CLFFTDataFormat) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertGlobalStoresAndTranspose(StringBuilder, int, int, int, int, int, int, CLFFTPlan.CLFFTDataFormat) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertHeader(StringBuilder, String, CLFFTPlan.CLFFTDataFormat) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertIntoHash(AlgorithmMeanShiftClustering.fams_hash_entry2[][], int[], int, int, int[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
INSERTION_SORT_THRESHOLD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: The size at or below which we will use insertion sort because it's probably faster.
insertLocalLoadIndexArithmatic(StringBuilder, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertLocalLoads(StringBuilder, int, int, int, int, int, int, int, int, String) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertLocalStoreIndexArithmatic(StringBuilder, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertLocalStores(StringBuilder, int, int, int, int, int, String) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertNoCheck(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
insertNode(int, int, AlgorithmNetworkSnake.AnchorPosition, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
insertNode(int, int, AlgorithmNetworkSnake.AnchorPosition, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
InsertNonZeroEntriesFromDenseReference() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
insertPoint(float, float, int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Inserts a point to the transfer function at the specified index.
insertPoint(Vector2f, int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Inserts a point to the transfer function at the specified index.
insertRaycastTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert tab into the raycast tab list ( raycast render ) for backup.
insertScriptLine() - Method in class gov.nih.mipav.model.provenance.actions.ActionOpenImage: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.provenance.actions.ActionStartMipav: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.provenance.actions.ActionStopMipav: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionBase: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeModality: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeName: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionClone: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionExit: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveImage: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveTab: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs
insertScriptLine() - Method in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in interface gov.nih.mipav.model.scripting.ScriptableActionInterface: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertScriptLine() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: If a script is being recorded and the action (read: algorithm) is done, add an entry for this action.
insertSeparator(int) - Method in class gov.nih.mipav.view.JScrollMenu
insertShearwarpTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert tab into the shear warp tab list ( shear warp render ) for backup.
insertShortcut(ShortCutted) - Method in class gov.nih.mipav.view.ViewFileChooserBase: Inserts a new shortcut into the list so that list's alphabetical order is preserved.
insertSlice - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Number of slice before which another slice is inserted.
insertSlice - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Number of slice before which another slice is inserted.
insertSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
insertSliceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
insertString(int, String, AttributeSet) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
insertSurfaceTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert tab into the surface tab list ( SurfaceRender ) for backup.
insertTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Insert the new tab into the current visible tab list.
insertTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Insert the new tab into the current visible tab list.
insertTab(String, JPanel) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Insert the new tab into the current visible tab list.
insertTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Insert triangle into the mesh.
insertTriangle(ModelSurfaceTopology.Triangle) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Convenience function for inserting triangles into the mesh.
InsertTriangle(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex: DOCUMENT ME!
insertTwiddleKernel(StringBuilder, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener
insertUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
insertUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
insertVariables(StringBuilder, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
insertVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
insertVolumeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
insertVolumePos - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
insets - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
insideComponent(int, GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
insideCount - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
insideTri(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Determines if the input position is inside the triangle widget.
insideValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
installPlugins() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
InstanceArgument(String, String, String...) - Constructor for enum gov.nih.mipav.view.Argument.InstanceArgument
InstanceCreationTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
instanceNumber - Variable in class gov.nih.mipav.model.file.FileInfoDicom: DICOM instance number.
InstanceNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
InstanceNumberComparator() - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile.InstanceNumberComparator
InstanceNumberVolComparator() - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile.InstanceNumberVolComparator
instanceTitle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
instanceUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: The instance UID.
InstanceVOI - Class in gov.nih.mipav.view.dialogs: The VOI instance holds the file name and directory name for each type of the VOIs (Axial, Sagittal, Coronal) Additionally, myContourVector is the chunk vector to hold the 3D coordinate points of VOIs for each type.
InstanceVOI - Class in gov.nih.mipav.view.renderer.WildMagic.TBI: The VOI instance holds the file name and directory name for each type of the VOIs (Axial, Sagittal, Coronal) Additionally, myContourVector is the chunk vector to hold the 3D coordinate points of VOIs for each type.
InstanceVOI(String, String) - Constructor for class gov.nih.mipav.view.dialogs.InstanceVOI
InstanceVOI(String, JTextField) - Constructor for class gov.nih.mipav.view.dialogs.InstanceVOI
InstanceVOI(String, JTextField) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
inStart - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
institution - Variable in class gov.nih.mipav.model.file.FileInfoCZI
institution - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
institution - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter
institution - Variable in class gov.nih.mipav.model.file.FileInfoOME.Person
InstitutionName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
inStream - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Input stream object acquired from the socket.
instructionLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: DOCUMENT ME!
instructions - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Instructions on how to use screen capture, line 1.
instructions2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Instructions on how to use screen capture, line 2.
instructions3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Instructions on how to use screen capture, line 3.
instrument - Variable in class gov.nih.mipav.model.file.FileInfoFits
Instrument(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: Creates a new Instrument object.
instrumentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.InstrumentRef
instrumentID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: Attributes.
instrumentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
InstrumentRef(Integer, Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.InstrumentRef: Creates a new InstrumentRef object.
instruments - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
insufficient_data - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
INT_STRING - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
int_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, byte[][], int, byte[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
int_upsample(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[][], int, short[][][], int) - Method in class gov.nih.mipav.model.file.libjpeg
INT_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
int16ToBuffer(byte[], int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 16 bit (2 bytes) integer into the specified portion of the byte array of proper endianess.
int32ToBuffer(byte[], int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 32 bit (4 bytes) integer into the specified portion of the byte array of proper endianess.
IntArrayPointer - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
IntArrayPointer(int[], int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer
intBlk - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Temporary DataBlkInt object (needed when encoder uses floating-point filters).
intBlk - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Temporary DataBlkInt object (needed when encoder uses floating-point filters).
intBuffer - Variable in class gov.nih.mipav.model.file.FileJP2: DOCUMENT ME!
intBuffer - Variable in class gov.nih.mipav.model.structures.IntVector: The vector data.
INTEGER - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type signed integer (32 bits per voxel).
INTEGER - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type signed integer (32 bits per voxel).
INTEGER_ATTRIBUTE - Static variable in class gov.nih.mipav.model.file.FileAfni: attribute types.
INTEGER_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type signed integer.
integerDistanceRound - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
integerDistanceRound - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: If true, take rounding of Euclidean distance as distance If false, take Euclidean distance as distance
integerDistanceRoundCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
integr - Variable in class gov.nih.mipav.model.algorithms.Integration2: With dqawoe: indicates which of the weight functions is to be used integr = 1 w(x) = cos(omega*x) integr = 2 w(x) = sin(omega*x) if integr.ne.1 and integr.ne.2, the routine will end with ier[0] = 6.
integr - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: With dqawoe: indicates which of the weight functions is to be used integr = 1 w(x) = cos(omega*x) integr = 2 w(x) = sin(omega*x) if integr.ne.1 and integr.ne.2, the routine will end with ier[0] = 6.
integral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
integral() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
integral() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
integral(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
integral(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
Integral() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
INTEGRAL_ORDER - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
integrate_wavelet(PyWavelets.ContinuousWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
integrate_wavelet(PyWavelets.DiscreteWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
INTEGRATED_DIRECTIONAL_DERIVATIVE_ANGLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
INTEGRATED_DIRECTIONAL_DERIVATIVE_ANGLE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
INTEGRATED_DIRECTIONAL_DERIVATIVE_MAGNITUDE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
INTEGRATED_DIRECTIONAL_DERIVATIVE_MAGNITUDE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
integratedAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
integratedAnnotationOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
integratedDirectionalDerivative() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
integratedExists(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
integratedMagnitude - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
integrateTransforms() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehavior: Sets up the new transform by creating transforms from the determined pitch, yaw, and roll angles and multiplying these with the velocity.
integrateTransforms() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehaviorRenderer: Sets up the new transform by creating transforms from the determined pitch, yaw, and roll angles and multiplying these with the velocity.
integrateTransforms() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Creates a new transform and sets it in the canvas.
integrateTransforms() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Creates a new transform and sets it in the canvas.
integrateTransforms() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.PointerBehaviorRenderer: Creates a new transform for the image by multiplying the appropriate rotations and translations.
Integration2 - Class in gov.nih.mipav.model.algorithms: This is a port of FORTRAN numerical integration routines in QUADPACK found at http://www.netlib.org/quadpack Reference: R.
Integration2() - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for running self tests.
Integration2(double, double, double, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for Integration2 Used with routine = DQAWCE.
Integration2(double, double, int, double[], double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for Integration Used with routine = DQAGPE.
Integration2(double, double, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for Integration Used with routine = DQNG.
Integration2(double, double, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for Integration Used with routine = DQAGSE.
Integration2(double, double, int, double, double, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: This constructor must be used with routine DQAWSE.
Integration2(double, double, int, double, int, double, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor must be used with routine dqawoe
Integration2(double, double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor for Integration Used with routine = DQAGE.
Integration2(double, int, double, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor must be used with routine dqawfe
Integration2(double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2: Constructor used with routine = DQAGIE.
Integration2All() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.Integration2All
Integration2EP - Class in gov.nih.mipav.model.algorithms: This is a port of FORTRAN numerical integration routines in QUADPACK found at http://www.netlib.org/quadpack Reference: R.
Integration2EP() - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for running self tests.
Integration2EP(DoubleDouble, int, int, DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor used with routine = DQAGIE.
Integration2EP(DoubleDouble, int, DoubleDouble, int, DoubleDouble, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor must be used with routine dqawfe
Integration2EP(DoubleDouble, DoubleDouble, int, int, DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for Integration Used with routine = DQAGE.
Integration2EP(DoubleDouble, DoubleDouble, int, DoubleDouble[], DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for Integration Used with routine = DQAGPE.
Integration2EP(DoubleDouble, DoubleDouble, int, DoubleDouble, int, DoubleDouble, DoubleDouble, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor must be used with routine dqawoe
Integration2EP(DoubleDouble, DoubleDouble, int, DoubleDouble, DoubleDouble) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for Integration Used with routine = DQNG.
Integration2EP(DoubleDouble, DoubleDouble, int, DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for Integration Used with routine = DQAGSE.
Integration2EP(DoubleDouble, DoubleDouble, int, DoubleDouble, DoubleDouble, int, DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: This constructor must be used with routine DQAWSE.
Integration2EP(DoubleDouble, DoubleDouble, DoubleDouble, int, DoubleDouble, DoubleDouble, int) - Constructor for class gov.nih.mipav.model.algorithms.Integration2EP: Constructor for Integration2 Used with routine = DQAWCE.
Integration2EPAll() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.Integration2EPAll
integrationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
integrity - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 736 GE Image Integrity.
inTempMax - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
inTempMax - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
inTempMin - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
inTempMin - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
intensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.distanceIntensityItem: DOCUMENT ME!
intensity - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
intensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex.DistanceIntensity
intensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
intensity - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
intensity - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: The intensity of the light, typically in [0,1].
INTENSITY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses the intensity magnitude
INTENSITY - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
intensityAverage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: If true indicates that the result image is an average of the three channels.
intensityAverage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: If true indicates that the result image is an average of the three channels.
intensityAverage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
intensityB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
intensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
intensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
intensityCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Checkbox for displaying intensity values.
intensityDialog - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
intensityDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
intensityDropper - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Used in paint to indicate intensity painted into the image.
intensityField - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
intensityFraction - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: units of intensity range; it is multiplied by the intensity range to create intensitySigma
intensityFraction - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
intensityG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
intensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
intensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
intensityGaussianDenom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
intensityGaussianDenom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
intensityGaussianDenom - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
intensityLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
intensityLabel - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: If true then the x,y location and pixel/voxel intensity should be displayed (x,y: intensity).
intensityLabelBackgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
intensityLabelBackgroundColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
intensityLabelColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
intensityLabelColorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
intensityLevelRB - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
intensityLockVector - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: ref to IntensityLockVector
intensityLockVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
intensityPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
intensityR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
intensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
intensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
intensitySlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Intensity slider.
intensitySlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Intensity slider.
intensitySpinner - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Spinner component for the paint intensity.
intensitySpinner - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The spinner for indicating the intensity to fill the image with when commiting paint in an image.
intensityStep - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The amount to change the value in the intensity spinner by when the user clicks it.
intensityStringValue - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
intensityText - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
intensityTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
intensityTF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Text field containing the seed value intensity.
intensityThreshold - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc: < Number of bins.
intensityValue - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The value of seed points to use.
intensityValue - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The current value chosen in the intensity spinner.
intent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Intent value in the attributes.
intentCode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The intent_code field can be used to indicate that the voxel data has some particular meaning.
intentName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The intent_name field provides space for a 15 character (plus 0 byte) name string for the type of data stored.
intentName - Variable in class gov.nih.mipav.model.file.FileNIFTI: The intent_name field provides space for a 15 character (plus 0 byte) name string for the type of data stored.
intentP1 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: If present, first auxiliary parameter used with intentCode
intentP2 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: If present, second auxiliary parameter used with intentCode
intentP3 - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: If present, third auxiliary parameter used with intentCode
IntentValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
INTER - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
interchangeXY - Variable in class gov.nih.mipav.model.file.FileSVS
interchangeXY - Variable in class gov.nih.mipav.model.file.FileTiff
INTERFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Interfile file format used in Nuclear Medicine. extension: .hdr
INTERFILE_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type INTERFILE
interfileDataType - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
interfileFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Radio button to indicate that an Interfile img file should be written out.
interImageDelay - Variable in class gov.nih.mipav.model.file.FileGESigna4X
interImageDelay - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
InteriorFaceRootCount(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
interiorFill - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
InterleavedComplexFormat - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDataFormat
intermediateBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Reference to intermediate buffer.
internal_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverStateUpdatingCallback
InternalAddParameterBlock(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
internalClassLoader - Variable in class gov.nih.mipav.plugins.JarClassLoader
internalDialog - Variable in class gov.nih.mipav.view.dialogs.BlankJistHook
internalDialog - Variable in class gov.nih.mipav.view.dialogs.MTryJistHook
internalNodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
InternalRemoveResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
internalScaling - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: If true, the columns of the Jacobian are scaled to have unit length.
internalScaling - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: If true, the columns of the Jacobian are scaled to have unit length.
internalUse1 - Variable in class gov.nih.mipav.model.file.FileLSM
interp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: The interpolation method to use when registering the original image against the flipped image.
interp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Interpolation method.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Interpolation method.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Interpolation method used in transformations.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Interpolation method.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Interpolation method used in transformations.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Interpolation method.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Interpolation method used in transformations.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Interpolation method.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Interpolation method used in transformations.
interp - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Interpolation method.
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
interp - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Interpolation method
interp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
interp_type() - Constructor for enum gov.nih.mipav.model.algorithms.SIFT3D.interp_type
interp1(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
interp2 - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
interp2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Interpolation method used in output.
interp2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Interpolation method used in output.
interp2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Interpolation method used in output.
interp2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Interpolation method used in output.
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
interp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
interpCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: turns interpolation on/off
interpCheckBoxA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
interpCheckBoxB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
interpFOVgroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Button group for interpolation type, contant FOV or start, end matching.
interpMode - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Interpolation mode (Linear, Cubic Bspline, Cubic Convolution).
interpMode - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
interpMode - Variable in class gov.nih.mipav.view.ViewJComponentBase: Interpolation mode for image display
interpMode - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Creates histogram with ellipses around most prominent clusters.
interpMode - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
interpolate(double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap: linearly interpolates colors for the specified location of the unit interval.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Performs a bilinear interpolation on points.
interpolate(double, double[], double[][], boolean, int) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
interpolate(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation
interpolate(double, double, double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Performs a trilinear interpolation on points.
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Performs a trilinear interpolation on points.
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Performs a trilinear interpolation on points.
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Performs a trilinear interpolation on points.
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Performs a trilinear interpolation on points.
interpolate(double, double, double, double[], double[][][][], boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Performs a trilinear interpolation on points.
interpolate(String) - Method in class gov.nih.mipav.model.scripting.VariableTable: Interpolates and returns the value of a given variable.
interpolate(Point3f, byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Trilinear interpolation of the image to produce image values at points P that are not at the integer voxel locations.
Interpolate(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: When set to true, the m_kPatientSlice.showDiagonal function does tri-linear interpolation of the ModelImage data:
Interpolate(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
Interpolate(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
Interpolate(float, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
INTERPOLATE_A - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Image interpolation only done for image A
INTERPOLATE_B - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Image interpolation only done for image B
INTERPOLATE_BOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Image interpolation only done for both images A and B
interpolate2D(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation
interpolateARGB(double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img: Returns a bilinearly interpolated ARGB value of the image for the specified normalized position (x and y within [0,1]).
interpolateBSpline(double[][][], double, double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: Do the B-Spline Interpolation
interpolateBSpline2D(double[][][], double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
interpolateColor(int, int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations: Linearly interpolates between the two specified colors.
c = c1*(1-m) + c2*m
interpolateColor(int, int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Linearly interpolates between the two specified colors.
c = c1*(1-m) + c2*m
interpolateColor(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: Trilinear interpolation of the image to produce image values at points P that are not at the integer voxel locations.
interpolateColors(int, int, int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
interpolateContour(VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Interpolates the input contour so that the spacing between contour points is <= 1 voxel.
InterpolateDisplay(String, Object) - Constructor for enum gov.nih.mipav.view.Preferences.InterpolateDisplay
interpolateDisplayChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Available options for image interpolation
interpolateImage() - Method in class gov.nih.mipav.view.JPanelHistogram
interpolateLattice(boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Entry point in the lattice-based straightening algorithm.
interpolateShapesButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
interpolateToValue(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Returns m of the equation: iso = lower*(1-m) + upper*m
which is: m = (iso-lower)/(upper-lower)
interpolateVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
InterpolatingPolynomialMinimizingStepSize(CeresSolver.LineSearchInterpolationType, CeresSolver.FunctionSample, CeresSolver.FunctionSample, CeresSolver.FunctionSample, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch
interpolation - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys
interpolation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
interpolation - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
interpolation - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
interpolation - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
Interpolation(float[], int, int, int, double, double, double, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
Interpolation(float[], int, int, int, double, double, double, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
Interpolation(ModelImage, int, int, int, double, double, double, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
InterpolationType() - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.InterpolationType
interpPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
interpretLAX(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: reads the given line of a LAX file to search for the initial heap size and maximum heap size Strings.
interpretXML(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: reads the given line of a plist file to search for the initial heap size and maximum heap size Strings.
interpT2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
interpType - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
interpType - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Method of interpolation
interpTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
interrogateAAssociateAC() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Decompose association ack.
interrogateAAssociateRQ() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Decompose association request and send proper response.
interScaleSaliency - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
interScaleSaliencyText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
intersect - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL support function definition for the triangle widgets:
intersect(delaunay.Halfedge, delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
intersect(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
IntersectedWith(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
IntersectedWith(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
intersection - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
intersectionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
intersectionPts - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: intersectioin points coordinate.
intersects(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Always return false.
intersects(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
intersects(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Points
intersects(Rectangle2D) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Renderable: tests if this ContourPlot.Renderable intersects or contains the specified rectangle.
intersects(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
intersects(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
intersects(Vector3f, Vector3f, Vector3f, Vector3f, Vector3f) - Static method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
intersectsBox(Vector3f, Point3f, Point3f, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Clip the current ray against the oriented bounding box of the 3D image.
interval - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
interval - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
interval - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
interval_x - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
interval_y - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
interval_z - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
intervalsD - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
IntFilterInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.IntFilterInputStream
IntFilterInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.IntFilterInputStream
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelI0NuclearArea: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.Integration2All
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
intFunc(double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping.qaws
intFunc(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.Integration2EPAll
intFunc(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
intFuncTest(double) - Method in class gov.nih.mipav.model.algorithms.Integration2
intFuncTest(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.Integration2EP
intialThreeParameterApproximation(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution
IntModel() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel: Creates a new IntModel object.
IntModel(double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel: Creates a new IntModel object.
IntModel2(double, double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModel2: Creates a new IntModel2 object.
IntModelBessel(double, double, int, int, double, double, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel: Creates a new IntModel2 object.
IntModelI0NuclearArea(double, double, int, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelI0NuclearArea: Creates a new IntModel2 object.
IntModelMean(double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean: Creates a new IntModelMean object.
IntModelMean2(double, int, int, double, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMean2
IntModelMeanSquared(double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared: Creates a new IntModelMeanSquared object.
IntModelMeanSquared2(double, int, int, double, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntModelMeanSquared2
intObject(int, short, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D.intObject: Initializes object with supplied parameters.
intObject(int, short, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D.intObject: Initializes object with supplied parameters.
intObject(int, short, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D.intObject: Creates a new intObject object.
IntPairToLong(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
intr_del - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 402 Interimage/interloc delay (uSec).
INTRAORAL_RADIOGRAPH - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality intraoral radiography.
INTRAORAL_RADIOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality intraoral radiography.
intrp() - Method in class gov.nih.mipav.model.algorithms.ODE
intrp() - Method in class gov.nih.mipav.model.algorithms.ODEEP
intTemp - Variable in class gov.nih.mipav.model.structures.IntVector: The temporary array used when increasing the storage space of the vector.
intToBytes(int, boolean, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: converts from int to bytes
IntToPtr(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
IntTorquato95ModelMean(double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean: Creates a new IntTorquato95ModelMean object.
IntTorquato95ModelMean(double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean: Creates a new IntTorquato95ModelMean object.
IntTorquato95ModelMean2(double, int, int, double, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2
IntTorquato95ModelMean2(double, int, int, double, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean2
IntTorquatoModelMean(double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean: Creates a new IntTorquatoModelMean object.
IntTorquatoModelMean2(double, int, int, double, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean2
intValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as an int.
intValue() - Method in class gov.nih.mipav.util.DoubleDouble: Converts this value to the nearest integer.
intVect - Variable in class gov.nih.mipav.model.structures.HQueue: DOCUMENT ME!
IntVector - Class in gov.nih.mipav.model.structures: Integer Vector is very similar to the Vector class except that it is designed specifically to store integers.
IntVector() - Constructor for class gov.nih.mipav.model.structures.IntVector: Create an list or stack of ints.
IntVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.IntVector
IntVector(int) - Constructor for class gov.nih.mipav.model.structures.IntVector: Create an list or stack of ints.
IntVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.IntVector
IntVector(int, int) - Constructor for class gov.nih.mipav.model.structures.IntVector: Create an list or stack of ints.
iNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
iNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
iNumLights - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: 12 possible intersection points.
inUse - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
inUse - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
inv(libdt.CovMatrix) - Method in class gov.nih.mipav.model.algorithms.libdt
inv_digamma(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
inv_posdef(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
inv_triu(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
INVALID - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
INVALID_INPUT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
INVALID_MNEMONIC - Static variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams
InvalidateArray(int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
InvalidateArray(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
InvalidateArray(int, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
InvalidateArray(int, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
InvalidateEvaluation(double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
InvalidateEvaluation(double[], double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
InvalidContextException() - Constructor for exception gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.InvalidContextException
InvalidInputDataException - Exception in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
InvalidInputDataException(String, File, int) - Constructor for exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
InvalidInputDataException(String, File, int, NumberFormatException) - Constructor for exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
InvalidInputDataException(String, String, int) - Constructor for exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
InvalidInputDataException(String, String, int, NumberFormatException) - Constructor for exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException
InvalidWeight() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
invariantCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
invariantCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
invariantDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true spatially invariant direction calculated.
invariantDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true spatially invariant direction calculated.
invariantDir - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
invariantDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
invariantMoment1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment1Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment2Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment3Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment4Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment5Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment6Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoment7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
invariantMoment7Description - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
invariantMoments(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
invbb - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
invDecimatedFreqs(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
inverse() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Inverse the matrix this.m = inverse(m);
Inverse - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection
Inverse() - Method in class gov.nih.mipav.model.structures.TransMatrix: Matrix inversion that replaces this objects matrix with an inverted matrix.
Inverse() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Matrix inversion that replaces this objects matrix with an inverted matrix.
INVERSE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: inverse FFT
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Inverse FFT
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Inverse FFT
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: FORWARD and INVERSE are 2 possible transformDir values
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Inverse FFT
INVERSE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
INVERSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: FFT will run in inverse direction, producing spatial domain image
INVERSE_CDF - Static variable in class gov.nih.mipav.model.algorithms.Gamma
inverse_DCT - Variable in class gov.nih.mipav.model.file.libjpeg.my_idct_controller
inverse_filter_bank(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
inverse_hessian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
INVERSE_POINTS - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
inverse_weibull(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
inverse1D(double[]) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
inverse1D(int, double[][]) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
inverse2D(int, int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
inverseCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
inverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Gamma
inverseDCT(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
inverseDCT(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
inverseDCT(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
inverseDCT(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
inverseDiagonal(ModelImage, int, int, Vector3f[], Vector3f) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
inverseDicomArray - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
inverseDicomArray - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM
inverseDicomArray - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: inverse dicom matrix array.
inverseDicomMatrix - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: inverset dicom matrix.
inverseFFT - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
inverseImage - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.HaarTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
inverseImage - Variable in class gov.nih.mipav.model.algorithms.SlantTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
inverseImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
inverseImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
inverseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
InverseLaplace - Class in gov.nih.mipav.model.algorithms: This is a port of the MATLAB INVLAP.M, a numerical inverse Laplace transform using the de Hoog algorithm, copyright by Karl Hollenbeck on November 22, 1996, Department of Hydrodynamics and Water Resources, Technical University of Denmark, DK-2800 Lyngby email:karl@isv16.isva.dtu.dk Downloaded from MATLAB central in ECP1 Software.zip.
InverseLaplace(double[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplace: Constructor for InverseLaplace.
InverseLaplace(double[], double, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplace: Constructor for InverseLaplace.
InverseLaplace2 - Class in gov.nih.mipav.model.algorithms: This is a port of the numerical inverse Laplace transform found as the FORTRAN implementation of Algorithm 619 from the collected algorithms from the ACM found at http://www.netlib.org/toms/619.
InverseLaplace2(double[], double, double, double, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplace2: Creates a new InverseLaplace2 object.
InverseLaplaceqd - Class in gov.nih.mipav.model.algorithms: This is a port of niltqd.m, a fast numerical inverse Laplace transform based on FFT and quotient-difference algorithm by Lubomir Brancik, 2001, Brno University of Technology.
InverseLaplaceqd(int, double) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceqd: Constructor for InverseLaplaceqd.
InverseLaplaceqd(int, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceqd: Constructor for InverseLaplaceqd.
InverseLaplaceTest - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest() - Constructor for class gov.nih.mipav.model.algorithms.InverseLaplaceTest
InverseLaplaceTest.FitdeHoog1 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog10 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog11 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog12 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog13 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog14 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog15 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog16 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog2 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog3 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog4 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog5 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog6 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog7 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog8 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitdeHoog9 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens1 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens10 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens11 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens12 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens13 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens14 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens15 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens16 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens2 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens3 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens4 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens5 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens6 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens7 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens8 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.FitPiessens9 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd1 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd10 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd11 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd12 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd13 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd14 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd15 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd16 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd2 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd3 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd4 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd5 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd6 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd7 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd8 - Class in gov.nih.mipav.model.algorithms
InverseLaplaceTest.Fitqd9 - Class in gov.nih.mipav.model.algorithms
inverseOptionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: choose inverse or no inverse threshold.
inverseOrder1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate inverse difference moment of order 1 Sum over i,j of Probability(i,j)/(1 + abs(i-j)).
inverseOrder1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate inverse difference moment of order 1 Sum over i,j of Probability(i,j)/(1 + abs(i-j)).
inverseOrder1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
inverseOrder1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
inverseOrder1CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
inverseOrder1CheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
inverseThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: flags for destination, threshold, inverse, and color image
inverseThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: boolean for inverse threshold
inverseThresholdButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Toggle buttons for transfer, threshold and threshold inverse.
inverseThresholdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: checkbox for inverse threshold
inversionDelay - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
inversionDelay - Variable in class gov.nih.mipav.model.file.FilePARREC
inversionDelayIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
inversionDelayPos - Variable in class gov.nih.mipav.model.file.FilePARREC
inversionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
inversionTime - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER: The inversion time of an MR scan.
inversionType - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
InversionType(String) - Constructor for enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType
invert - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: DOCUMENT ME!
invert - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: DOCUMENT ME!
invert - Variable in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
invert - Variable in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
invert - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
invert(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
Invert() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
Invert() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
INVERT_INPUT - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Set this flag if you want to invert the inputs.
invertAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
invertAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
invertAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
invertCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
Inverted() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
invertedBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
invertedLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
invertFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
invertFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
invertFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
invertFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Haralick invert filter.
invertFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
invertFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
invertImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
invertImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
invertImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
inverTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 198 pulse inversion time (usec).
invertLUT() - Method in class gov.nih.mipav.model.structures.ModelLUT: Inverts the LUT using the values stored in the band arrays and not the transfer functions.
InvertLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState
invertMesh() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Invert the mesh z-coord, reorder the triangles, and recompute the normals:
invertNormals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Smooth button.
invertNormals(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Decimate the selected surfaces.
InvertPSDMatrix(boolean, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
invertRX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertRX() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertRY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertRY() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertRZ - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertRZ() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: invertSculpt: called by ViewJFrameVolumeView when the user presses the "Invert Sculpt Region" button, inverting the sculpt region.
invertSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Inverts the sculpt image.
invertSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Invert the sculpt region.
invertSculpt(int, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Invert the sculpt image at the position
invertSculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: clearwSculptRegion: called when the "Clear Outline" Button is pressed.
invertSculptRegion() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: clearwSculptRegion: called when the "Clear Outline" Button is pressed.
invertSelections() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Method to invert the selection of slices in an image.
invertSelections(boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Method to invert the selection of slices in an image.
invertT1toR1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
invertT1toR1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
invertT2toR2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
invertTX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertTX() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertTY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertTY() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertTZ - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to invert the settings of the mouse
invertTZ() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
invertX - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
invertXStr - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Internal trakcVis use
invertY - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
invertY - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
invertYStr - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Internal trakcVis use
invertZ - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
invertZStr - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Internal trakcVis use
invest - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
Investigator(String) - Constructor for class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Creates a new Investigator with given name.
investigatorEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
investigatorModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: model associated with investigator information.
investigators - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: Investigators (up to 3).
investigatorsStr - Static variable in class gov.nih.mipav.model.file.FileImageXML: array of strings representing the tags under in the xml schema.
investigatorTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: investigator information table.
investigatorTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
invgb - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
invgg - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
INVJCO(double[][], double[], double, double[], double[], double[], double, double[], double[], double[], double, double, double[], double, int, int, double, double, double, double, double, int[], boolean, double[], int, double, double, int, int, double[], double[], double[][], double, double, double[], double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
invlen(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Finds the point at some percentage along the curve using simple midpoint root finding algorithm.
INVLEN_MAXITER - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
INVLEN_TOLERANCE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
invlenNewton(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Finds the point at some percentage along the curve using Newtons method of root finding.
invnormcdf(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
invokeClipping() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Enable the six clipping planes at a time.
invokeClipping() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Enable the six clipping planes at a time.
invokeClippingPlanes() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Invokes all the 6 clipping when 6 clipping checkbox is checked.
invokeClippingPlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Invokes all the 6 clipping when 6 clipping checkbox is checked.
invokeDisplayFunction() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
invokeMeasure() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
invokeMeasure() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
invokeSaveImgAs(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Invoking the ViewJFrameAnimate saveImageAs action.
inVolExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
inVolume - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
inVolume3d - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
invrb - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
invrespfn_canon - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
invrespfn_default - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
invrespfn_linear - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
invrg - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
invrr - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
invtvwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
inWindow(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
io - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
ioBuffer - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Buffer used in sending DICOM image.
ioff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
iopt - Variable in class gov.nih.mipav.model.algorithms.curfit: Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.
iOptions - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 300 Imaging options.
iord - Variable in class gov.nih.mipav.model.algorithms.Integration2: The first k elements of iord are pointers to the error estimates over the subintervals, such that elist[iord[0]], ..., elist[iord[k-1]] form a decreasing sequence, with k = last if last <= (limit/2 + 2) , and k = limit + 1 - last otheriwse.
iord - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The first k elements of iord are pointers to the error estimates over the subintervals, such that elist[iord[0]], ..., elist[iord[k-1]] form a decreasing sequence, with k = last if last <= (limit/2 + 2) , and k = limit + 1 - last otheriwse.
ip - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Specifies how many array positions are desired (usually 10 is sufficient).
ip - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
ip(double[][][][][], double[][][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ip(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ip(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ip(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
iparms - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
iparms - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
iparms - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2
iparms - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: Found in routine xlaenv
iparms - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations
iparms - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations2
iparms - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations3
iparms - Variable in class gov.nih.mipav.model.structures.jama.SVD
IPD - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
ipField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
IPIVT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ipLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
ipmpar(int) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
IPOLY - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
IPOW - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
ippft(double[][][], int[], double[], int[], double[][][], double[][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ippft3(double[][][][], int[], double[], int[], double[][][][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ippft3_ref(double[][][][], int[], double[], int[], double[][][][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ippftconsts(double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ippftd(double[][][], double[][][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ippftprecomp(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
IPTC - Static variable in class gov.nih.mipav.model.file.FileSVS
IPTC - Static variable in class gov.nih.mipav.model.file.FileTiff
IptcDescriptor(MetadataExtractor.IptcDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IptcDescriptor
IptcDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory
IptcDirectoryTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest
IptcMarkerByte - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader
IptcReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.IptcReader
IptcReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest
IPToP(Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
iptype - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
ipvt - Variable in class gov.nih.mipav.model.algorithms.Lmmin: ipvt is an integer OUTPUT array of length n.
IQUCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
IQUPH - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
iRadon(double[][][], int[], double[], int[], double[][][], double[][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
iradon3(double[][][][], int[], double[], int[], double[][][][], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
irank - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
irank - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
irc - Variable in class gov.nih.mipav.model.algorithms.NL2sol
ired - Static variable in class gov.nih.mipav.model.structures.ModelLUT
iResols - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: The voxel resolutions of the input image.
iResols - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: The voxel resolutions of the input image.
iResols - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: The voxel resolutions of the input image.
iResols - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: The voxel resolutions of the input image.
irfc(Vector<Integer>, Vector<Short>, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
irfft(double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
IRI - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
irow - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
irspgrCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrData - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrFA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrFA - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrFAField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrGeneralPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrImageIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrKy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrKy - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrNum - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrSlices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner
irspgrTI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrTI - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrTr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrTr - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrTR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
irspgrTR - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
irspgrTRField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
is - Variable in class gov.nih.mipav.model.algorithms.NL2sol
is - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint: < Integer unnormalized y coordinate.
is(String) - Static method in class gov.nih.mipav.view.Preferences: Gets the boolean state of the property, where in the preferences file the "yes", "on", "true" all return true, but anything else (or non-existent property) returns false.
IS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
is_baseline - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
is_boundary(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
is_boundary(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
is_boundary(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
is_computed_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
is_constant_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
is_constrained - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
is_constrained - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
is_decompressor - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codec_private_t
is_decompressor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_common_struct
is_decompressor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
is_discrete_wavelet(PyWavelets.WAVELET_NAME) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
is_dummy_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
is_free(int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
is_free(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
is_image_rgb - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
is_lower_bound(int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
is_lower_bound(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
is_not_silent_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
is_ordered_variable - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
is_padded - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
is_positive_definite_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
is_positive_definite_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LBFGS
is_raw - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlPgmImage: < pixel maximum value (<= 2^16-1).
is_rgb_image - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
is_silent - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
is_silent - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
is_toggle - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams
is_upper_bound(int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
is_upper_bound(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
is_valid(int, int, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
is_valid_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
is_valid_geometry(Covdet.VlScaleSpaceGeometry) - Method in class gov.nih.mipav.model.algorithms.Covdet
is2d - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Images that are solely 2D images set this to true; images with other dimensionality are false.
is2D - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
is2D - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
is2DImage() - Method in class gov.nih.mipav.model.structures.ModelImage
is3DImage() - Method in class gov.nih.mipav.model.structures.ModelImage
is3DKernel() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
is3DSelectionEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
is3DSelectionEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
is3DSelectionEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
is4D - Variable in class gov.nih.mipav.model.file.FileMincHDF
is4DImage() - Method in class gov.nih.mipav.model.structures.ModelImage
is6PlaneClipping - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Flag to indicate 6 plane clipping is active.
is6PlaneClipping - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean flag to indicate if the 6 plane clipping mode is active.
is6PlaneClipping() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Indicate whether the 6 clipping plane is active or not.
isAAinFallbackEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles: Return true when anti-aliasing is enabled for fallback (AWT) rendering (default=false).
IsAbs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns true if the shape is in absolute coordinates.
isAcpc - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: True if we have the data to compute orig <-> acpc.
isAcpc() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Returns true if we have data to compute orig <-> acpc.
isAcpc(boolean) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Sets isACPC flag.
isActionComplete() - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.BlankJistHook
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Returns whether the action has successfully completed its execution.
isActionComplete() - Method in class gov.nih.mipav.view.dialogs.MTryJistHook
isActive() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that tells if the VOI is active.
isActive() - Method in class gov.nih.mipav.model.structures.VOIBase: Accessor to flag that indicates if an VOI is active.
isActive() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Returns true if the VOIManager is currently drawing a VOI, or if the defaultPointer button in the VOIManagerInterface is selected.
isActive() - Method in class gov.nih.mipav.view.Rubberband: Returns a boolean indicating activity.
isActiveImage - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity
isActiveImage - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: DOCUMENT ME!
isActivePoint - Variable in class gov.nih.mipav.model.structures.VOIPoint: True only for the active point of a polyline_slice structure (display's coordinates)
isActivePoint() - Method in class gov.nih.mipav.model.structures.VOIPoint: True if this is the active point in the PolyLineSlice object.
isAJavaContainer(File) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode: Whether file qualifies as being a Java container (this is anything that may include or is a class file).
isAlive() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Checks to see if the thread controlling the receivers execution is alive.
isAllActive() - Method in class gov.nih.mipav.model.structures.VOI: Returns true iff all contours in this VOI are active.
isAlpha(byte) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Determines if a byte is an alpha character.
IsAmbiguous(double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
IsAmbiguous(double[], double, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
IsAmbiguous(float[], float, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
IsAmbiguous(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
isAnalyzeOrSPM(String) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Determines whether this file is ANALYZE file or not based on three fields of the header file: sizeof_hdr, extent and regular.
isAnalyzeOrSPM(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Analyze.
isAncillary() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isAnimating() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
isAnnotateEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: is annotation mode is enabled or not.
isAnnotationEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
isAnyCategorySetBelowWarn() - Method in class gov.nih.mipav.view.Preferences.LogConfig
isAnyModelLightEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Determine if any "model" relative lights are enabled.
isAnyWorldLightEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Determine if any "world" positioned lights are enabled.
isAppend - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
isAppFrameVisible - Variable in class gov.nih.mipav.view.ViewUserInterface: Whether the mipav GUI should be shown; set by the -hide command line option.
isAppFrameVisible() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to check whether the application frame visible or not.
isArbitraryClipping(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Called by the JDialogSurface to find the current mouse event is from the arbitrary frame box moving or not.
isArbitraryRotation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Flag indicates that arbitrary clipping plane is triggered or not.
IsArrayValid(int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IsArrayValid(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IsArrayValid(int, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IsArrayValid(int, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
isAVI - Variable in class gov.nih.mipav.model.file.FileWriteOptions: AVI option.
isAVI() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
isAVIRecording() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Returns whether the AVI is recording.
isB() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsB(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: toggle between background and text color changing.
isBGImageShowing - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
isBGImageShowing() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
isBigendian() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
isBigEndian() - Method in class gov.nih.mipav.model.file.FileBase: Return true if the byte order is big endian.
isBlue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
isBlue() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
isBlueProcessingRequested() - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Returns whether the algorithm should process the input image's blue channel.
isBmatFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
IsBorder(Face, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face: Return a boolean that indicate if the j-th edge of the face is a border.
isBorderOn() - Method in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
isBoundary(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is a boundary point when it is on the boundary of the current region.
isBoundary(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: An image element is a boundary point when it is on the boundary of the current region.
isBoundary(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: An image element is a boundary point when it is on the boundary of the current region.
IsBoundaryEdge(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
IsBoundaryEdge(OctNode, int, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
IsBoundaryFace(OctNode, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
isBoundaryPoint(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
IsBoundsConstrained() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
isBrainsurfaceFlattenerEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the brainsurface flattener render is enabled from the resample dialog or not.
isBrainSurfaceFlattenerPickEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Returns the pick enabled state of the brainsurfaceFlattener.
isBufferedImageOfType(Image, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver
isButton(Component) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Return true if the component is a digital/absolute button, and its identifier name ends with "Button" (i.e. the identifier class is Component.Identifier.Button).
isButtonPressed() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Return whether the button press state is set which can be used as an indication of whether or not the associated TransformGroup instance is being interactively updated.
isButtonPressed(int) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
isBW10 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW10 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW12 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW12 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW14 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW14 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW2 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW2 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW24 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW24 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW4 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW4 - Variable in class gov.nih.mipav.model.file.FileTiff
isBW6 - Variable in class gov.nih.mipav.model.file.FileSVS
isBW6 - Variable in class gov.nih.mipav.model.file.FileTiff
isByContour() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Method to retrieve the selected value for contour-only calculation.
isBySlice() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Method to retrieve the selected value for slice-only calculation.
isByVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Method to retrieve the selected value for VOI-only calculation.
isBz2zip - Variable in class gov.nih.mipav.model.file.FileWriteOptions
isBz2zip() - Method in class gov.nih.mipav.model.file.FileWriteOptions
isCalculateB0() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isCalculateM0() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isCalculateT2() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isCalibrations - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isCancelled() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Accessor that returns whether or not the dialog has been cancelled.
isCancelled() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Accessor that returns whether or not the dialog has been cancelled.
isCategoryAndLevelEnabled(int, Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences.LogConfig
isCategorySetBelowWarn(int) - Method in class gov.nih.mipav.view.Preferences.LogConfig
isCellEditable(int, int) - Method in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
isCellEditable(int, int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
isCellEditable(int, int) - Method in class gov.nih.mipav.model.structures.UneditableTableModel: Called by table renderer.
isCellEditable(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.DicomTableModel
isCellEditable(int, int) - Method in class gov.nih.mipav.view.ViewTableModel: Returns false for all cells, so none can be edited.
isCellEditable(EventObject) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
isCentered - Variable in class gov.nih.mipav.model.file.FileMincHDF: whether each axis is centered
isChanging - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity
isChanging() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
isCheckerboardAnimate() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
isCheckerboardApplied() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
isCheckerboarded() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Tells whether or not the image is being displayed in checkerboard mode.
isCheshire(String, String) - Static method in class gov.nih.mipav.model.file.FileCheshire: Method to test to determine if the image format is Cheshire, so appropriate read method may be called.
isChildProcess - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: False if the DecoderRAW instance is self-contained process, false if thrown by another process (i.e by a GUI)
isChildProcess - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: False if the DecoderRAW instance is self-contained process, false if thrown by another process (i.e by a GUI)
isCIELAB - Variable in class gov.nih.mipav.model.file.FileSVS
isCIELAB - Variable in class gov.nih.mipav.model.file.FileTiff
isClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
isClipAE() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
isClipArbiPicked - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane frame being picked or not.
isClipArbiPicked - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean flag to indicate if the arbitary clipping mode is active.
isClipArbiPicked() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return the flag for the arbitrary clipping plane frame being picked or not.
isClipOBB() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
isClipSphere() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
isClockRotation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: flag indicate if the rotation is clockwise or counter clockwise.
isClockRotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: flag indicate if the rotation is clockwise or counter clockwise.
isClockRotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: flag indicate if the rotation is clockwise or counter clockwise.
IsClose(double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
isClosed() - Method in class gov.nih.mipav.model.structures.VOIBase: Flag used to indicate type of contour: true = closed contour (i.e.
isClosed() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Determine if the triangle mesh is closed.
IsClosed() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Point info method, is closed point
isCloseOkay - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Indicates that we are done with the current grow, and can close the MIP when the done button is next clicked.
isClosing - Variable in class gov.nih.mipav.view.ViewJFrameBase: Whether the frame's close() method is being called.
isCMYK - Variable in class gov.nih.mipav.model.file.FileSVS
isCMYK - Variable in class gov.nih.mipav.model.file.FileTiff
isColor - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
isColor - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
isColor - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Indicates whether is image is a color image or not.
isColor - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: is color boolean
isColor - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
isColor - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
isColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: is color boolean
isColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Accessor that indicates if the source image is a color image.
isColorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Indicates the image being messed with is a color image.
isColorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: indicates the image is a color image.
isColorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
isColorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: DOCUMENT ME!
isColorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: flags for destination, threshold, inverse, and color image
isColorImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
isColorImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: indicates the image is a color image.
isColorImage - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: boolean for color image
isColorImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a color image.
isColorImage(int) - Static method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the given data type is a color data type.
IsColorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Return true if the Volume image is a color image.
isColorPlanar2D - Variable in class gov.nih.mipav.model.file.FileFits
isColourImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Colour images set this to true; monochromatic should be false;.
isCommentLine(String) - Static method in class gov.nih.mipav.model.scripting.ParserEngine: Checks to see if a line is a comment.
isCompactDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
isComplete - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Indicates whether the scripted algorithm completed successfully.
isComplete() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Returns whether the algorithm completed successfully.
isComplete() - Method in class gov.nih.mipav.view.JPanelProgressBar: Used to determine if the progress bar is at 100%.
isComplete() - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
isComplete() - Method in class gov.nih.mipav.view.ViewJProgressBar: Used to determine if the progress bar is at 100%.
isCompleted - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
isCompleted() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns flag that indicates that the algorithm has been sucessfully completed.
isCompleted() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
isComplex - Variable in class gov.nih.mipav.model.file.FileDicom
isComplexImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a COMPLEX or DCOMPLEX image.
isCompositeXYZPositionColumn(String) - Static method in class gov.nih.mipav.view.ViewJFrameDICOMParser: The purpose of this method is to determine whether the parameter represents one of the special table columns.
isComputeMaximum() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
isComputeMinimum() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
isConnected() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Determine if the triangle mesh is connected.
IsConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
IsConstrainedApproximateMinimumDegreeOrderingAvailable() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
isConstructed - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
isConstructed() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
isContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
IsConvex() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Tests if the shap is convex w.r.t. each path.
IsConvexHullUsed() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns true if the texture model is based on the convex hull.
isCorrectTranformMatrixFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
isCorrespondencePickEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Return whether or not picking correspondence points is enabled:
isCorrespondencePickEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Return whether or not picking correspondence points is enabled:
isCounterClockwise() - Method in class gov.nih.mipav.model.structures.VOIContour: Determines if the points are ordered in a counterClockwise manner.
isCritical() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isCurrentTagSQ - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Whether the tag currently being processed and read in is a sequence tag.
isCurveAnnotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
isCurveAnnotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
isCurveSelected(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isCurveSelected(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
isCvs - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < Cvs precomputed value
isD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isData - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isDataAlpha(byte[]) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Determines if data byte array is a string of characters.
isDataFlavorSupported(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.ImageConverter
isDataFlavorSupported(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: DOCUMENT ME!
isDataFlavorSupported(DataFlavor) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
isDataType - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isDebug() - Static method in class gov.nih.mipav.view.Preferences: Returns flag indicating if the debug flag is true or false.
isDefault() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not this is the default save.
isDefaultCharacter(String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Checks that all the characters of the string are in the default character repertoire.
isDefaultCommand(String) - Static method in class gov.nih.mipav.view.Preferences: DOCUMENT ME!
isDefaultKeyStroke(KeyStroke) - Static method in class gov.nih.mipav.view.Preferences: DOCUMENT ME!
IsDeleted() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isDescendant(TreePath, TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
isDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: check the dialog so that if all the fields are okay (have the right number of digits, etc) and there are no messages to send back to the user about correctness.
isDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: check the dialog so that if all the fields are okay (have the right number of digits, etc) and there are no messages to send back to the user about correctness.
isDialogVisible() - Method in class gov.nih.mipav.view.ViewJColorChooser: DOCUMENT ME!
isDicom - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: DOCUMENT ME!
isDicom - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
isDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
isDicom(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Dicom.
isDICOM - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean indicating if we are dealing with dicom or par/rec
isDICOM - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: boolean indicating if we are dealing with dicom or par/rec
isDICOM - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
isDICOM() - Method in class gov.nih.mipav.model.file.FileDicom: Looks for the DICM _tag_ in the File header.
isDicom_ver2(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: tests if unknown file is of type 2.0 dicom
isDICOM_ver2() - Method in class gov.nih.mipav.model.file.FileDicom: Dicom version 2: Does not have a preamble in which to search for "DICM" So...the solution will be to search that it has at least a couple of beginning "08" tags However, we do not know if its Little Endian or Big Endian..so need to handle both
isDicomImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a DICOM image.
isDicomOrdered() - Method in class gov.nih.mipav.model.file.FileInfoBase: isDicomOrdered() returns true if the file is in dicom order, false otherwise.
isDicomRecv - Variable in class gov.nih.mipav.model.file.FileDicomBase
isDiffusionSeries(FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileIO
isDigit(char) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: determines if char is a digit
isDimension - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isDimensions - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isDir() - Method in class gov.nih.mipav.model.file.FileDicom
isDirectionFixed() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if updates to direction affect the target while keeping the direction fixed.
isDirectionNeeded() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
isDirectory() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Returns true if this fileNode is a directory and not a normal file.
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
isDirty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
isDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
isDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
isDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Points
isDirty() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Renderable: if true, indicates that a call to #updateGL(boolean) is necessary to sync this objects GL resources to its current state.
isDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
isDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
isDivisible(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Check if the extent value is divisible by 2, 4 or 8.
isDoMultiThread() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
isDoPicking - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
isDoSubsample() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
isDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
isDrawCommand(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
isDTISort - Variable in class gov.nih.mipav.model.file.FileIO
isDWICellEditBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
isEdgePixel(double, double, double, double, double, double, double, double, double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
isEditAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isEditAnnotations() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
isEDTI - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean telling if dataset is eDTI
iSelect - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: index of currently selected one.
iSelect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: index of currently selected one.
isempty - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < for synthesis, number of columns in a frame (0 if unknown).
isEmpty() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Gets a value indicating whether the directory is empty, meaning it contains no errors and no tag values.
isEmpty() - Method in class gov.nih.mipav.model.structures.HQueue: isEmpty - returns a flag indicating if the entire hierarcial queue is empty.
isEmpty() - Method in class gov.nih.mipav.model.structures.IntVector: Returns flag indicating if the array is empty.
isEmpty() - Method in class gov.nih.mipav.model.structures.VOI: Test whether or not the VOI is empty.
isEmpty() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
isEmpty() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
isEmpty() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
isEmpty() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.EdgeAttribute: Test if the set of adjacent triangles is empty.
isEmpty() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.VertexAttribute: Test if the sets of adjacent edges and triangles are empty.
isEmpty() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
isEmpty() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Returns a flag indicating if this tree is empty.
isEmpty() - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Returns a flag indicating if this tree is empty.
isEmptyAt(int) - Method in class gov.nih.mipav.model.structures.HQueue: isEmptyAt - returns a flag indicating if a specific queue is empty.
isEnabled - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
isEnabled - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
isEnabled - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
isEnabled - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
isEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
isEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
isEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
isEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
isEnabled() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Renderer: Whether this renderer is enabled or not.
isEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light is currently enabled.
isEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Return indication of whether or not this behavior is enabled.
isEnabledDiffuse() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query if the vertex diffuse color property is enabled.
isEnabledSpecular() - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: Query if the vertex specular color property is enabled.
isEndoscopyEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the fly through render is enabled from the resample dialog or not.
isEndpoint(int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Decides whether parameter 'index' is an endpoint of this transfer function.
isEndpoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: This method returns whether or not pix is the index of an endpoint in tmpBuffer (it is assumed that location pix is not the intensity of the background in tmpBuffer).
isEndpoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: This method returns whether or not pix is the index of an endpoint in tmpBuffer (it is assumed that location pix is not the intensity of the background in tmpBuffer).
isEndpoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: This method returns whether or not pix is the index of an endpoint in tmpBuffer (it is assumed that location pix is not the intensity of the background in tmpBuffer).
isEndpoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: This method returns whether or not pix is the index of an endpoint in tmpBuffer (it is assumed that location pix is not the intensity of the background in tmpBuffer).
isEnhanced - Variable in class gov.nih.mipav.model.file.FileDicom
isEnhanced() - Method in class gov.nih.mipav.model.file.FileDicom
isEnhanced4D - Variable in class gov.nih.mipav.model.file.FileDicom
isEnhanced4D() - Method in class gov.nih.mipav.model.file.FileDicom
isEnhancedDicom - Variable in class gov.nih.mipav.model.file.FileInfoDicom: whether it is enhanced dicom or not
isEnhancedDicom() - Method in class gov.nih.mipav.model.file.FileInfoDicom
isEntryPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Flag indicates that probe rotate around the entry point or not.
isEntryPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Flag indicates that probe rotate around the entry point or not.
isEqualOrGreaterThan(Preferences.LogLevel) - Method in enum gov.nih.mipav.view.Preferences.LogLevel
IsEvaluationValid(Vector<double[]>, double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
IsEvaluationValid(Vector<double[]>, double[], double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
isEvenSelected() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Returns true if only the even image slices have been selected.
isExitRequired() - Static method in class gov.nih.mipav.plugins.JDialogStandalonePlugin: Returns whether the way that the plug-in is being run requires us to exit MIPAV when the window closes.
isExitRequired() - Static method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin: Returns whether the way that the plug-in is being run requires us to exit MIPAV when the window closes.
isExpanded - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: are the dicom tags expanded *
isExplored() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Whether or not this node has been 'explored', and its subdirectories and file-children have been found.
isExtensionSupported(String) - Method in interface gov.nih.mipav.plugins.PlugInFile: Checks whether a particular file extension is supported by this plugin.
isEyeTrackingEnabled - Static variable in class gov.nih.mipav.view.MipavUtil
isEyeTrackingEnabled() - Static method in class gov.nih.mipav.view.MipavUtil: Check eye tracking is enabled or not.
isFar(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is a far element when its visitation time t is infinite: t = Float.MAX_VALUE.
isFastMode() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
IsFeasible(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
IsFF(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isFilament - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.FilamentArc: DOCUMENT ME!
isFilled() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph
isFilterSet - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter
isFinalized() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Test whether or not the sample has had its cost finalized.
isFinished() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Called by the dialog.
isFinite(double) - Static method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
isFirst - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
isFirst() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Returns flag indicating if this is the first mouse event vector in a series.
isFirst() - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Returns flag indicating if this is the first mouse event vector in a series.
isFirstSlicePoint() - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns true if this is the first point in the PolyLineSlice object.
isFirstTimeBuildTree - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: First time to build the clipping plane tree.
isFirstTimeBuildTree() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Return whether the clipping planes tree branch being built the first time.
isFittingComplete - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
isFixed() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that tells if VOI is fixed.
isFixed() - Method in class gov.nih.mipav.model.structures.VOIBase: Accessor to flag that indicates if an VOI is fixed (movable).
isFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
isFocusable() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Always returns true.
isFormatBWOnly(String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver
isFormatRGBOnly(String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver: returns if specified image format supports rgb values only.
isFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
isFromFrame() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
isFunction(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method determining if token is function
isGE - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean telling if datset is GE
isGE_GenesisImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a GE_GENESIS image.
isGE_Signa4XImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a GE_SIGNA4X image.
isGEButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
isGeodesicEnable() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Check whether the Geodesic drawing is enabled or not.
isGeodesicEnable() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Check whether the Geodesic drawing is enabled or not.
isGeodesicEnable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Check whether the Geodesic drawing is enabled or not.
isGeScanner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isGESigna4X() - Method in class gov.nih.mipav.model.file.FileGESigna4X: Looks for the image header ID "IMAGE HEADER" and number of image header blocks (usually 2 in units of 512 bytes )in GE Signa 4.X file in the File header.
isGESigna4X(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type GE Signa 4X type.
isGESigna5X() - Method in class gov.nih.mipav.model.file.FileGESigna5X: Looks for the magic number "IMGF" in image header for GE Signa 5.X type file.
isGESigna5X(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type GE Signa 5X type.
isGLDoublePrecision - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
isGpuCompEnabled() - Static method in class gov.nih.mipav.view.Preferences: Indicates whether GPU-computing should be enabled.
isGPULineMin() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
isGPULineMin() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
isGradientMagnitudeOpacityEnabled() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Return whether or not the opacity mapping based on gradient magnitude is enabled.
isGradientMagnitudeOpacityEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Return whether or not the opacity mapping based on gradient magnitude is enabled.
isGreen() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
isGreen() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
isGreenProcessingRequested() - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Returns whether the algorithm should process the input image's green channel.
isGzip - Variable in class gov.nih.mipav.model.file.FileWriteOptions
isGzip() - Method in class gov.nih.mipav.model.file.FileWriteOptions
ISHAPE - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ISHAPE2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
isHasImageMinMaxDimOrder() - Method in class gov.nih.mipav.model.file.FileInfoMincHDF
isHeaderFile(String) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Return true if the file specified by absolutePath is header file of ANALYZE.
isHeaderFile(String) - Static method in class gov.nih.mipav.model.file.FilePARREC: Return true if the file specified by absolutePath is header file of PARREC.
isHeaderFile(String) - Static method in class gov.nih.mipav.model.file.FileSiemensText: Return true if the file specified by absolutePath is header file of SiemensText.
isHeaderFile(String) - Static method in class gov.nih.mipav.model.file.FileSpar: Return true if the file specified by absolutePath is header file of ANALYZE.
isHeaderOnlyRead() - Method in class gov.nih.mipav.model.file.FileDicomBase: Returns whether this Dicom read is only interested in the header tags and not the image data (if it exists).
IsHelpSwitch(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Parse help augments
isHexadecimal(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
isHidden() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
isHidden() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Renderable: Indicates whether this Renderable is hidden i.e. will not be drawn.
isHidden() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text
isHidden() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
isHighlight() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
isHistogramDisplay() - Static method in class gov.nih.mipav.view.Preferences: Indicates whether the image display should be updated in real-time as histogram LUTs are changed
isHistoInit() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Returns true if the multi-histogram histogram texture has been initialized, false otherwise.
IsHole() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Point info method.
isIdentity() - Method in class gov.nih.mipav.model.structures.TransMatrix: Reports whether transform is Identity transform, to within a small epsilon.
isIdentity() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Reports whether transform is Identity transform, to within a small epsilon.
isign(int) - Method in class gov.nih.mipav.model.algorithms.Covdet
isIgnoreMouseMotion() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Indicates whether or not the canvas is ignoring mouse events.
isIgnoreMouseMotion() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Indicates whether or not the canvas is ignoring mouse events.
isImage(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
isImage25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns flag that indicates if the image should be processed slice by slice.
isImageASelected() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns whether the imageA LUT panel is currently visible and active.
isImageASelected() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Returns whether the imageA LUT panel is the one being worked on.
isImageASelected() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Returns whether the imageA LUT panel is the one being worked on.
isImageBSelected() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns whether the imageB LUT panel is currently visible and active
isImageBSelected() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Returns whether the imageB LUT panel is the one being worked on.
isImageBSelected() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Returns whether the imageB LUT panel is the one being worked on.
isImageData - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isImageDestinationOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Makes the image destination directory.
isImageFile(String) - Static method in class gov.nih.mipav.model.file.FileAnalyze: Return true if the file specified by absolutePath is image file of ANALYZE.
isImageFile(String) - Static method in class gov.nih.mipav.model.file.FilePARREC: Return true if the file specified by absolutePath is image file of PARREC.
isImageFile(String) - Static method in class gov.nih.mipav.model.file.FileSiemensText: Return true if the file specified by absolutePath is image file of SiemensText.
isImageFile(String) - Static method in class gov.nih.mipav.model.file.FileSpar: Return true if the file specified by absolutePath is image file of ANALYZE.
isImageHashtableEmpty() - Method in class gov.nih.mipav.view.ViewUserInterface: Indicates if the image hashtable is empty.
isImageJPluginClass(Class) - Static method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Deprecated.
Use PluginUtil methods.
isImageJPluginClass(Class<?>) - Static method in class gov.nih.mipav.plugins.PluginUtil: Returns whether the given class is an ImageJ plugin.
isImageOpenedByScriptDialog - Variable in class gov.nih.mipav.view.dialogs.ScriptImage
isImageRegistered(String) - Method in class gov.nih.mipav.view.ViewUserInterface: Indicates if the image name is found in the hashtable.
isImageResampleable(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase: Returns whether an image can be resampled to match imageA for loading into the imageB slot of the frame.
isImageStored(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Checks to see if an image has been stored somewhere in the image table.
isImageStoredInRecorder(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Returns whether an image has been registered in the script recorder.
isImageStoredInRecorder(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters: Returns whether an image has been registered in the script recorder.
isImageStoredInRecorder(ModelImage, boolean) - Static method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Returns whether an image has been registered in the script recorder.
isImageUpdate() - Method in interface gov.nih.mipav.view.HistoLUTParent: Indicates if real-time update of the image should take place.
isImageUpdate() - Method in class gov.nih.mipav.view.JPanelHistogram
isImageUpdate() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Indicates if real-time update of the image should take place.
isImageUpdate() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Indicates if real-time update of the image should take place.
isImageUpdate() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Indicates if real-time update of the image should take place.
isImageUpdate() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Indicates if real-time update of the image should take place.
isImageUpdate() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Indicates if real-time update of the image should take place.
isImageVariableSet(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Checks to see if an image variable has been added to the table.
isIn(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
isIncludeB1Map() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isInEx(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
isInfinite() - Method in class gov.nih.mipav.util.DoubleDouble
IsInit - Static variable in class gov.nih.mipav.util.MipavInitGPU
isInitialised - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
isInitialised - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
isInMenu() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
isInPluginFolder(Class) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Deprecated.
Use PluginUtil method.
isInPluginFolder(Class) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Determines whether c is in the current plugin folder.
isInPluginFolder(Class<?>) - Static method in class gov.nih.mipav.plugins.PluginUtil: Determines whether c is in the current plugin folder.
isInPluginFolder(String) - Static method in class gov.nih.mipav.plugins.PluginUtil: Determines whether the className is in the plugin folder.
isInPluginFolder(String) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Deprecated.
Use PluginUtil method.
isInPluginFolder(String) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Determines whether the className is in the plugin folder.
isinpoly(boolean[], boolean[][], double[][], double[][], double[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
isinpoly2(int[], boolean[][], double[][], double[][], double[], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
isInScan(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
IsInside(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Performs a hit test on the point p.
IsInside(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Wrapper to check is point p is inside the shape
IsInside(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns true if the point 'p' is inside the triangle.
IsInside(CAAMPoint, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Tests if the point 'p' belongs to the shape.
IsInside(CAAMPoint, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Performs a hit test on the point p.
IsInside(CAAMPoint, int[], double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Performs a hit test on the point p.
isInsideIntensityThreshold(int, int, int, ModelImage, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: check if point (x,y,z) has same intensity as (xS,yS,zS)
IsInsidePath(CAAMPoint, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Tests if the point 'p' is inside the path starting at position 'path_start'.
isInsideVOI(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: check if given pixl location is inside VOI or not.
isInstanceNumberRecalculated() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not the Instance Number (0020,0013) should be recalculated before saving.
isInteger() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Checks if this MetadataExtractor.Rational number is an Integer, either positive or negative.
isInterfile(String, String) - Static method in class gov.nih.mipav.model.file.FileInterfile: Method to test to determine if the image format is Cheshire, so appropriate read method may be called.
isInterfile(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Interfile.
isInterior(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is an interior element when it is valid and not a trial element.
isInterleaved - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean if dataset is interelaved
isInterleaved - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: boolean if interleaved
isInterpolateDisplay() - Static method in class gov.nih.mipav.view.Preferences: Maintained for backwards compatibility.
isIntervalMode() - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory
isInverse - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Inverse threshold: false means turn all pixels outside of the lower and upper thresholds to the given fill value, true means turn all data within the lower and upper thresholds to the fill value (fill value can also be binary (0)).
isInverse - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: fill values are for values outside (inverse) or inside (normal/false).
isInverse - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
isInverse - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: inverse?
isInvertT2toR2() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isJonesBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
isKirbyBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
isLabelVisible() - Method in class gov.nih.mipav.view.graphVisualization.MipavEdgeRenderer
isLaxFile(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
isLeaf() - Method in class gov.nih.mipav.model.file.FileMincHDF.HDFNode
isLeaf() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
isLeaf() - Method in class gov.nih.mipav.view.ViewFileTreeNode: Leaves are not directories.
isLogAlgorithmEnabled() - Static method in class gov.nih.mipav.view.Preferences
isLogCommsEnabled() - Method in class gov.nih.mipav.view.Preferences
isLogFileIOEnabled() - Static method in class gov.nih.mipav.view.Preferences
isLogL - Variable in class gov.nih.mipav.model.file.FileSVS
isLogL - Variable in class gov.nih.mipav.model.file.FileTiff
isLogLuv - Variable in class gov.nih.mipav.model.file.FileSVS
isLogLuv - Variable in class gov.nih.mipav.model.file.FileTiff
isLogMinorEnabled() - Static method in class gov.nih.mipav.view.Preferences
isLogScriptingEnabled() - Method in class gov.nih.mipav.view.Preferences
isLowerCase(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isLowerLeftCorner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isLowerRightCorner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isLPS - Variable in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: The default is to read the voi coodinates as LPS coordinates.
isLUT1Based(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

end HistoLUTParent.
isLUT1Based(ModelStorageBase) - Static method in class gov.nih.mipav.view.JPanelHistogram: returns true if the first entry in the color look-up table is (1,1,1), false otherwise.
isM_bUpdateBounds() - Method in class gov.nih.mipav.model.structures.VOIBase
isM_bUpdateGeometricCenter() - Method in class gov.nih.mipav.model.structures.VOIBase
isMagnetomVision() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Looks for the string "MAGNETOM VISION" in image header ID.
isMagnetomVision(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Siemens Magnetom Vision.
isMakingCheckerboard() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
isManifold() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Determine if the triangle mesh is manifold.
IsManifold(Face, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face: Return a boolean that indicate if the face is complex.
isMarked(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark
isMarked(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh: Check if the face incremental mark matches the one of the mesh.
isMarked(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh: Check if the vertex incremental mark matches the one of the mesh.
isMarked(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark
isMarker() - Method in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: Returns flag indicating if we've read in a marker.
isMATLABVersion - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
isMax2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
isMaxOfMinResol() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
IsMember(T) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
isMenuCommand(Component[], String) - Static method in class gov.nih.mipav.view.ViewMenuBar: determines if there is a matching action command
isMenuCommand(JMenu, String) - Static method in class gov.nih.mipav.view.ViewMenuBar: determines if there is a matching action command
isMenuItemEnabled(String) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Provides a method of checking the state of specified menu.
isMenuItemSelected(String) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Provides a method of checking the state of specified menu.
isMinc() - Method in class gov.nih.mipav.model.file.FileMinc: Looks for the CDF tag at the start of the image 'C''D''F''\001' in image header ID.
isMinc(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Minc.
isMincHDF(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Determines whether the file on disk is of type MINC 2.0
isMincImage() - Method in class gov.nih.mipav.model.structures.ModelImage: Accessor that returns whether or not the image is a MINC image.
isMipavPluginClass(Class) - Static method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Deprecated.
Use PluginUtil methods.
isMipavPluginClass(Class<?>) - Static method in class gov.nih.mipav.plugins.PluginUtil: Returns whether the given class is a MIPAV plugin.
IsModeAllowed(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Checks if the given mode is allowed.
isModelDisplayed() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isModelDisplayed() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
isMotorolaByteOrder() - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader: Gets the endianness of this reader.
isMotorolaByteOrder() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Gets the endianness of this reader.
isMouseControlEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: is mouse control enabled or not.
isMouseFlythru - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
isMouseFlythru - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
isMulti - Variable in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Whether the file is opened as a multifile image.
isMulti() - Method in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
isMulti() - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Return whether the file should be opened as a multifile image.
isMultifile - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: boolean isMultifile
isMultifile - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: boolean isMultifile
isMultifile - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: boolean isMultifile
isMultifile - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: boolean isMultifile
isMultifile - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: boolean isMultifile
isMultiFile - Variable in class gov.nih.mipav.view.dialogs.ScriptImage
isMultiFile() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not this is an image to be stored as multiple files.
isMultiFile() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
isMultiFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
isMultiFrame() - Method in class gov.nih.mipav.model.file.FileInfoDicom: Accessor for the status of this dicom info.
isMultipleImages() - Method in class gov.nih.mipav.view.ViewJFrameImage: Helper method to establish if there are other images so that a dialog can be created.
isMultipleSameSizeImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage: Helper method to establish if there are images of the same dimensionality so that a dialog can be created.
isMultipleSameSizeTriImages() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to establish if there are images of the same dimensionality so that a dialog can be created.
isMultiply - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: boolean for truncate/multiply *
isMultiply - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: boolean for truncate/multiply *
isMultiply - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: boolean for truncate/multiply *
isMultiThreadingEnabled() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
isMultiThreadingEnabled() - Static method in class gov.nih.mipav.view.Preferences: Indicates whether multi-threading should be enabled for algorithms.
isn - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
isn - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
isNaN() - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is NaN.
isNavigationEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: is nagivation mode enabled or not.
ISNCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
IsNear3x3Matrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
IsNearAngleAxis(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
isNearLine(int, int) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Determines whether the mouse cursor is near the active transfer function line.
IsNearQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
isNegative() - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is less than 0.
isNegativeFinite() - Method in class gov.nih.mipav.util.DoubleDouble
isNegativeInfinity() - Method in class gov.nih.mipav.util.DoubleDouble
isNegativeSpeed() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
isNeighbor(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Check the neighbor pix.
isNeighbor(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Check the neighbor pix.
isNewVoiNeeded(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
isNewVoiNeeded(int) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Deprecated.
isNIFTI() - Method in class gov.nih.mipav.model.structures.TransMatrix: Tells whether this matrix is associated with a NIFTI image this only matters when the matrix is being saved/when the composite matrix is being generated in MatrixHolder
isNIFTI() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Tells whether this matrix is associated with a NIFTI image this only matters when the matrix is being saved/when the composite matrix is being generated in MatrixHolder
isNIFTI(String, String) - Static method in class gov.nih.mipav.model.file.FileNIFTI: Method determines if the image format is NIFTI, so FileIO will call the appropriate FileNIFTI read method.
isNIFTI(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type Nifti.
isnold - Variable in class gov.nih.mipav.model.algorithms.ODE
isnold - Variable in class gov.nih.mipav.model.algorithms.ODEEP
isNormalized() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
IsNormalizedQuaternion(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
isnormq(double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
ISNPH - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
isNull() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
ISO_8859_1 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets
ISO_8859_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
Iso2022Converter() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
Iso2022ConverterTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.Iso2022ConverterTest
isoAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
isOCL_CPU_Available - Static variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
isOCL_GPU_Available - Static variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
isOCLAvailable - Static variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
isOCLAvailable() - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
isoCurvAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
isOddSelected() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Returns true if only the odd image slices have been selected.
isoImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: new to this version: must keep isoImage around if image needed to be transformed.
isoImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: new to this version: must keep isoImage around if image needed to be transformed.
isoImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: new to this version: must keep isoImage around if image needed to be transformed.
isoImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: new to this version: must keep isoImage around if image needed to be transformed.
isoImageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Isotropic version image A, B, used by the shear warp renderer.
isoImageB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Isotropic version image A, B, used by the shear warp renderer.
isOldVersion - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean identifying if par/rec datset is older than version 4.1
ISOLV - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
isoNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
isOpenContour(boolean) - Method in class gov.nih.mipav.view.JPanelStatisticsList: Controls whether non-closed contours are being used for statistics calculations.
isOpenedByDialog - Variable in class gov.nih.mipav.view.dialogs.ScriptVOI
isOpenedByDialog() - Method in class gov.nih.mipav.view.dialogs.ScriptVOI
isOpenedByScript() - Method in class gov.nih.mipav.view.dialogs.ScriptImage
isOpenVOIAction(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Returns whether a action string would result in the opening of a VOI.
isOperator(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method determining if token is an operator
isOptimized() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable: The opposite of MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.isTypical().
isOptimized() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory: The opposite of MetadataExtractor.HuffmanTablesDirectory.isTypical().
isOptional - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Whether the parameter needs to be given a value by the user in the ActionDiscovery system.
isOptional() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns whether this parameter needs to be set by the user when using the ActionDiscovery system.
isOrderedVariable(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
IsOrderingValid(CeresSolver.Program, CeresSolver.OrderedGroups<double[]>, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IsOriginal() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Point info method.
isOrigSigned(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns true if the data read was originally signed in the specified component, false if not.
isOrigSigned(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice: Returns true if the data read was originally signed in the specified component, false if not.
isOrigSigned(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: Returns true if the data read was originally signed in the specified component, false if not.
IsOrthonormal(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ISOSpeedRating - Variable in class gov.nih.mipav.model.file.FileInfoBase
ISOSpeedRatingBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
isoSpeedRatings - Variable in class gov.nih.mipav.model.file.FileSVS
isoSpeedRatings - Variable in class gov.nih.mipav.model.file.FileTiff
ISOSpeedRatingTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
isotopeName - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
isotopeNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
isotopeNumber - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
IsOuterEdge() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Point info method, is outer edge or not.
isOutputNewImageSet() - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: Returns whether a new image should be produced by the dialog this panel is a part of.
isoValue - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
isp - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: The component where the image is to be displayed
isp - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: The component where the image is to be displayed
isPackBitEnabled() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not it is possible to write with packed bits compression (only possible with TIFF byte images).
isParallelPowell() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
IsParameterBlockConstant(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
IsParameterBlockSetIndependent(Set<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
isParentConditionValueMet() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Tests whether the value of the parent parameter is the same as the parent value that this Parameter requires.
isPartiallySelected(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
isPathFlythru - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
isPathFlythru - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
isPathMoveForward() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Return the flag indicating whether moving was forward, as opposed to in reverse, down the path.
isPathMoveForward() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Get indication of whether the movement along the current path is in the forward or reverse direction.
isPathMoveForward() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Return the flag indicating whether moving was forward, as opposed to in reverse, down the path.
isPathMoveForward() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Get indication of whether the movement along the current path is in the forward or reverse direction.
isPathMoveForward() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Get indication of whether the movement along the current path is in the forward or reverse direction.
isPathPlanningEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: is path planning mode enabled or not.
isPathRecorded() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
isPathRecorded() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
isPathSelected(TreePath, boolean) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
isPaused() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Returns whether the mouse recorder is paused.
isPaused() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Returns whether the mouse recorder is paused.
isPDFAsImageRenderingEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
isPDFAsImageRenderingEnabled() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas
isPerformApproxModeling() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isPerformConventionalModeling() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isPerformConventionalWith0Phase() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isPerformConventionalWith180Phase() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isPerformFullModeling() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
ispg - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
isPickEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Returns whether or not picking is enabled:
isPixelAnExtremum(double[][][], double) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
isPlaying - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Flag to indicating play mouse is running or not.
isPlaying - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Flag to indicating play mouse is running or not.
isPlaying - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Flag to indicating play mouse is running or not.
isPlaying() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Returns whether the mouse recorder is playing saved events.
isPlaying() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Returns whether the mouse recorder is playing saved events.
isPLineSliceVOI() - Method in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
isPListFile(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
isPluginClass(Class) - Static method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Deprecated.
Use PluginUtil methods.
isPluginClass(Class<?>) - Static method in class gov.nih.mipav.plugins.PluginUtil: Returns whether the given class is a MIPAV/ImageJ plugin.
isPlugInFrameVisible - Variable in class gov.nih.mipav.view.ViewUserInterface: Whether a plugin standalone frame is visible
isPlugInFrameVisible() - Method in class gov.nih.mipav.view.ViewUserInterface: Accessor to see if a stand-alone plugin frame is visible (not app frame)
isPluginSelected() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Whether plugins are selected in the JTree, equivalent to whether a leaf is selected in the JTree
isPopupMenuVisible() - Method in class gov.nih.mipav.view.JScrollMenu
isPositive() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: True if the value is non-zero and numerator and denominator are either both positive or both negative.
isPositive() - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is greater than 0.
isPositiveFinite() - Method in class gov.nih.mipav.util.DoubleDouble
isPositiveInfinity() - Method in class gov.nih.mipav.util.DoubleDouble
isPowerOf2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Check if the dimension value is already a power of 2.
isPowerOfTwo() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns true if the ModelImage 3D dimensions combine to be a power of two.
isPowerOfTwo(int) - Static method in class gov.nih.mipav.util.MipavMath: Determines if the input is an exact power of two.
isPreference(String) - Static method in class gov.nih.mipav.view.Preferences: Gets the boolean state of the property, where in the preferences file the "yes", "on", "true" all return true, but anything else (or non-existent property) returns false.
isPreferenceSet(String) - Static method in class gov.nih.mipav.view.Preferences: Returns whether the user has a preference indicated for a particular property.
isPreview() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isPreview() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
isPrivate() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isProbePicked() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: If probe being picked or not.
isProbeRootParentBGLive() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Check the probe root branch group is attached or not.
isProcDirCreated - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean if proc dir was created
isProcessWholeImageSet() - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: Returns whether the whole image should be processed (as opposed to just VOI regions).
IsProgramValid(CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchPreprocessor
IsProgramValid(CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
isProgressBarVisible() - Method in class gov.nih.mipav.model.file.FileBase: Returns flag that indicates that the progressBar is visible.
isProgressBarVisible() - Method in class gov.nih.mipav.model.file.FileDicomBase: Returns flag that indicates that the progressBar is visible.
isProgressBarVisible() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Returns flag that indicates that the progressBar is visible.
isProvidedOutputDir() - Static method in class gov.nih.mipav.view.ViewUserInterface: This is the getter for providedOutputDir providedOutputDir: This boolean tells if the user has provided an ouputDir parameter as a command line argument when running a script
isProvidedUserDefaultDir() - Static method in class gov.nih.mipav.view.ViewUserInterface
ISPRT - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ISPRT - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
isPuncturePickEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Return whether or not picking the puncture triangle is enabled:
isPuncturePickEnabled() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Return whether or not picking the puncture triangle is enabled:
isPutInFrame() - Method in class gov.nih.mipav.view.ViewOpenFileUI: Returns whether or not the new image will be put into a frame.
isq(double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
isQform() - Method in class gov.nih.mipav.model.structures.TransMatrix: Tells whether a NIFTI matrix is a qform matrix or a sform matrix
isQform() - Method in class gov.nih.mipav.model.structures.TransMatrixd: Tells whether a NIFTI matrix is a qform matrix or a sform matrix
isQuickLUT() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if this is a QuickLUT contour.
isQuiet() - Method in class gov.nih.mipav.model.file.FileDicom: gets the quiet option on the class.
isQuiet() - Method in class gov.nih.mipav.model.file.FileIO: Refers to whether or not the FileIO will send alerts to the user about progress or errors.
isQuietRunning() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
isR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isRange - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue.Values: DOCUMENT ME!
isRangeUniform - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
israw - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
israw_blurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
israw_true - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
isRayCastEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the raycast render is enabled from the resample dialog or not.
isReadComplete() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Returns true if the reading is complete else false.
isRecording() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Returns whether the mouse recorder is recording.
isRecording() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Returns whether the mouse recorder is recording.
isRed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
isRed() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
isRedProcessingRequested() - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Returns whether the algorithm should process the input image's red channel.
isReference - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration: if the image is in a registration window, is the image the reference (and not the adjusted).
isReference() - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Returns true if this is the reference image.
isReferenceLine - Variable in class gov.nih.mipav.model.file.FileSVS.ModREADInputStream
isReferenceLine - Variable in class gov.nih.mipav.model.file.FileTiff.ModREADInputStream
isReferenceTagTable - Variable in class gov.nih.mipav.model.file.FileDicomTagTable: Whether this tag table is a reference table (meaning it contains all of the tags for a given fileInfo and does not need to refer anywhere else when retrieving values).
isReferenceTagTable() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns true if this dicom tag table is a root tag table, not attached to a reference table.
isRefImageSourceSlice() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Convenience method to determine if this is a 2.5D registration where the reference (target) image is once of the slices in the source image.
isRegistered - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: whether this is an existing or new VOIText (isRegistered = existing).
isRegistered(VOI) - Method in class gov.nih.mipav.model.structures.ModelImage
isRemovalSelectionOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: checks to see if the JPanelAnonymizeImage has had any selections made to it.
isRenderPDFAsImage - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
isRenderSvgAsImage - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
isResampleNeeded(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase: Returns whether a image should be resampled to match the extents and resolutions of imageA.
isResolutionCorrectionEnabled() - Method in class gov.nih.mipav.view.components.JPanelSigmas: Returns whether the z-dimension sigma should be corrected based on the image resolution.
isRGB10 - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB10 - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB12 - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB12 - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB14 - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB14 - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB2 - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB2 - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB24UINTtoFLOAT - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB24UINTtoFLOAT - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB32UINTtoFLOAT - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB32UINTtoFLOAT - Variable in class gov.nih.mipav.model.file.FileTiff
isRGB4 - Variable in class gov.nih.mipav.model.file.FileSVS
isRGB4 - Variable in class gov.nih.mipav.model.file.FileTiff
isRGBA - Variable in class gov.nih.mipav.model.file.FileSVS
isRGBA - Variable in class gov.nih.mipav.model.file.FileTiff
isRoot - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode: Whether root of file system
isRotate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Flag indicating mouse rotation, avoid image disappearing problem.
isRunInSeparateThread() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Returns whether this dialog's algorithm should be run in a new thread.
isRunning - Variable in class gov.nih.mipav.model.scripting.ScriptRunner: Indicates whether a script is currently being run by mipav.
isRunning - Variable in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
isRunning - Variable in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
isRunning() - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Returns whether we are currently running a script.
isRunningInSeparateThread() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Should be set to true if NOT in a single thread (i.e., the main gui and this algo are in different threads) - will NOT force a graphics update of the progress bar.
isRunningInSeparateThread() - Method in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
isRW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsRW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isSafe(int[][], int, int, int, int, boolean[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
isSafe(int, int, int[][], ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
isSafe(int, int, int[][], ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
isSafe(int, int, int[][], ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
isSafe(int, int, int[][], ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
isSafe(int, int, int[][], ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
isSafe(int, int, int[][], ModelImage, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
isSafe(int, int, int[][], ModelImage, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
isSafe(int, int, int[][], ModelImage, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
isSafe(int, int, int[][], ModelImage, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
isSafe(int, int, int[][], ModelImage, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
isSafe_searchOnBottom(int[][], int, int, int, int, boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
isSafe_searchOnLeft(int[][], int, int, int, int, boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
isSafe_searchOnRight(int[][], int, int, int, int, boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
isSafe_searchOnTop(int[][], int, int, int, int, boolean[][], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
isSafeToCopy() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isSameImageAs(ParameterImage) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterImage: Checks to see if this image placeholder variable is the same as another image placeholder (e.g., '$image1' == '$image1'; does not check image name).
isSATransform - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: flag for determining if the transform is for scanner anatomical (->AXIAL).
isSATransform - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: is this a scanner anatomical transform (->AXIAL)
isSaveAs() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not this is a Save or SaveAs operation.
isSaveInSubdirectory() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not the save should be into a subdirectory of imagename (without extension).
isSaveMasksAs4D() - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D
isScale - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
IsSchurType(CeresSolver.LinearSolverType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
isScreenCapAttached - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Hack-ish boolean to avoid double adding screen captures to the attachment list.
isScript - Variable in class gov.nih.mipav.model.file.FileAvi: for saving within scripts.
isScript - Variable in class gov.nih.mipav.model.file.FileWriteOptions: For Scripts.
isScript - Variable in class gov.nih.mipav.model.scripting.actions.ActionBase
isScript() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Checks to see if this is being run from a script.
isScript() - Method in class gov.nih.mipav.model.scripting.actions.ActionBase
isScriptRunning() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Returns whether the current dialog is being run from within a script.
IsSculptDrawn() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Return true if the sculpt image has been drawn.
isSeamCell - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
isSeamCell() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
isSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
isSelectedPathsOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Records all paths chosen in the source tree.
isSet - Variable in class gov.nih.mipav.view.JPanelEditSetOrParam: DOCUMENT ME!
isSet() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether all of the options have been previously set (usually by the script parser).
IsSet(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
isSetLessThan(Preferences.LogLevel) - Method in enum gov.nih.mipav.view.Preferences.LogLevel
isShearWarpEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the shear warp render is enabled from the resample dialog or not.
isShift() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isShiftDown - Variable in class gov.nih.mipav.view.ViewJFrameImage: boolean indicating if shift button is down.
isShiftSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
isShorcutRecording() - Method in class gov.nih.mipav.view.ViewUserInterface: Determines if the UserInterface is currently recording an action command as a shortcut.
isShowBoundingRect() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Returns whether the bounding rectangle should be drawn.
isShowTotals() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Method to retrieve the selected value for totals calculation.
isSiemens - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean telling if datset is SIEMENS
isSiemensButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
isSiemensScanner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isSiemensText(String) - Static method in class gov.nih.mipav.model.file.FileSiemensText
isSigned - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Whether the data must be signed when writing or not.
isSinglePoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Check if the given pix is a single point or not.
isSinglePoint(int, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Check if the given pix is a single point or not.
isSlicePowerOfTwo() - Method in class gov.nih.mipav.model.structures.ModelImage: Returns true if the ModelImage 2D dimensions (slice size) combine to be a power of two.
isSnapToTarget() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Return whether the user wants to snap to the treatment target surface.
IsSolutionUsable() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
IsSolutionUsable(CeresSolver.GradientProblemSolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
IsSolutionUsable(CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
isSorted(Iterator<T>) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Checks if specified iterator is sorted according to natural ordering.
isSortedByVolumes - Variable in class gov.nih.mipav.model.file.FilePARREC: normal par/rec are sorted by volumes...sometime, they are not sorted like this...instead they are based on slices if that is true, then we need to change around the image dataarray to make it sorted by volumes
isSorting() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
isSpaceNavCodeRunning - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
isSpatialUniform - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
isSplit - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: DOCUMENT ME!
isSplit() - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if this is a split-line contour.
isSplitter() - Method in class gov.nih.mipav.view.RubberbandLine
isSPM(String) - Static method in class gov.nih.mipav.model.file.FileSPM: Determines whether this file is SPM file or not based on three fields of the header file: sizeof_hdr, extent and regular.
isSPM(String, String, boolean) - Static method in class gov.nih.mipav.model.file.FileUtility: Tests if the unknown file is of type SPM.
isStandalone - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
isStateChangedEvent - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Flag to indicate StateChangeEvent invoked.
isStaticLightEnabled() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Check static light is enable or not.
isStaticPicked() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Indicates whether the static light bulb being picked by the mouse.
isStatisticSelectionOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: checks to see if the checklist has had any selections made to it.
IsStepSuccessful() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
isStopped - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
isStopped() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Returns whether the mouse recorder is stopped.
isStopped() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Returns whether the mouse recorder is stopped.
isStopRequested - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse: DOCUMENT ME!
isSuccessful() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Accessor that returns the whether or not the algorithm completed successfully.
isSuccessful() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Accessor that returns the whether or not the algorithm completed successfully.
isSuccessful() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Accessor that returns the whether or not the algorithm completed successfully.
isSurfacePickableSelected() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Check if the surface pickable checkbox be selected or not.
isSurfacePickableSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Check if the surface pickable checkbox be selected or not.
isSurfaceRenderEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the surface render is enabled from the resample dialog or not.
isSurfaceViewEnable - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicate if the surface view is enabled from the resample dialog or not.
isSvgAsImageRenderingEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
isSvgAsImageRenderingEnabled() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas
issymmetric - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Symmetry flag.
IsSymmetric() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
isSystem - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: boolean determining if this is the system's data provenance, or an open image's
isSystemOutRedirected() - Static method in class gov.nih.mipav.view.LogStdStreams: Is the System.Out being redirected to this logfile.
isTabDelimited() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticFileFormatOptions: Provides the state of the tab-delimited option.
isTableDestinationOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Locates the translation/key-file destination directory.
isTagSameAsReferenceTag(FileDicomTag) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Returns true if a given tag is in the reference tag table and has the same value as the tag in the reference table.
isTargetFixed() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if updates to position affect direction while keeping the target fixed.
istart - Variable in class gov.nih.mipav.model.algorithms.ODE
istart - Variable in class gov.nih.mipav.model.algorithms.ODEEP
isThreadStopped() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Returns flag that indicates that the algorithm thread has been stopped.
isThreadStopped() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
isThresholding() - Method in class gov.nih.mipav.view.JFrameHistogram: Returns true if image A or B is in dual threshold inverse mode (for JDialogConvertType input ranges).
isThresholding() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Returns true if comphist A or B is in dual threshold inverse mode (for JDialogConvertType input ranges).
isTlrc - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: True if we ahve the data to compute acpc <-> tlrc.
isTlrc() - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: returns true if we have data to compute acpc <-> tlrc.
isTlrc(boolean) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Sets isTLRC flag.
isTLRCBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
isToggle() - Method in class gov.nih.mipav.view.CustomUIBuilder.UIParams
isTransformChanged - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Flag to indicate tranformChanged event invoked.
isTransparent() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory
isTreeReadyForScriptExecution() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Checks tree to see that all place holders have been replaced with actual images and VOIs if not, it prompts the user with a warning message, and highlights the first node that still contains a placeholer.
isTrial(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is a trial element when its visitation time t is invalid (t < 0), its inverse speed is finite, and the element is adjacent to the boundary of the current region.
isTriggerMouseEvent(MouseEvent, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
isTriPlanarVolView - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Mode is tri-planar volume view or not.
IsTruncated() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
IsTrustRegionSolveSuccessful(boolean, boolean, boolean, boolean, CeresSolver.TrustRegionStrategyType, int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
isTypeAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if current light type is ambient.
isTypeDirectional() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if current light type is directional.
isTypePoint() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if current light type is point.
isTypeSpot() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if current light type is spot.
isTypical() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable: Evaluates whether this table is a "typical" Huffman table.
isTypical() - Method in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory: Evaluates whether all the tables in this MetadataExtractor.HuffmanTablesDirectory are "typical" Huffman tables.
iSubdivisions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
isUnits - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
isUpperCase(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isUpperLeftCorner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isUpperRightCorner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isUseHardThresholding() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isUseMouseRotationCutoffs() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
isUseMouseTranslationCutoffs() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
isUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isUseSmartThresholding() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
isUshape - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
isUshape - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
isUshape - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
isUsingSliceSpacingCoarse() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Retrieves whether the "coarse" slice sampling is currently selected.
isUsingSliceSpacingFine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Retrieves whether the "fine" slice sampling is currently selected.
isUsingVolumeColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: flag to indicate to use volume color or not
isV() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
isV2MatrixDataFile() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
isV2MatrixDataFile(File) - Static method in class gov.nih.mipav.model.structures.TransMatrix
isValid(byte[]) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader: Ensure that a BPLIST is valid.
isValid(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is valid whenever its visitation time t satisfies the conditions: 0 ≤ t < Float.MAX_VALUE).
IsValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
IsValid() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
IsValid() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Returns true if the file is valid.
IsValid(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
IsValid(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
isValidByte(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
isValidDate(int, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DateUtil
isValidIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
isValidIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
isValidIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
isValidIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
isValidNumber(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
isValidTime(int, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DateUtil
isValidV2MatrixFileRead() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
isValueAssigned - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Whether a value has been set for this parameter.
isValueAssigned() - Method in class gov.nih.mipav.model.scripting.parameters.Parameter: Returns whether a value has been set for this parameter.
isValueValid(short) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Checks whether a prospective value is valid.
isVariableSet(String) - Method in class gov.nih.mipav.model.scripting.VariableTable: Checks to see if a variable has been added to the variable table.
isVertexRoundingEnabled() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
isViewTextureAligned - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Flag to indicate whether the view volume texture is aligned or not.
isVisible - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: Is dialog visible or not.
isVisible - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Flag indicating if the image is currently visible.
isVisible() - Method in class gov.nih.mipav.model.structures.VOI: Accessor that tells if the VOI is visible.
isVisible() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
isVisibleMask - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
isVisiblePaint - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
isVMOptionsFile(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
isVOIOpen() - Method in class gov.nih.mipav.view.ViewJPopupVOI: Checks to see if the active VOI is a polyline.
isVOIsCloseEnough(int, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Check the registration accuracy.
isVOIsCloseEnough(int, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Check the registration accuracy.
isVolOpacityChanged - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean indicator for volume opacity changed.
isVolOpacityChanged() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
isVolumeDisplayMode3D - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean indicator for the current diaplay mode, volume render mode or slice render mode.
isVolViewMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Check is volume view frame or not.
isW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
IsW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
isWorking - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
isWorking() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
isWritePackBit() - Method in class gov.nih.mipav.model.file.FileWriteOptions: Accessor that returns whether or not to write with packed bits compression (only possible with TIFF byte images).
iswt(double[][], PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
iswt2(double[][][], PyWavelets.DiscreteWavelet[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
iswtn(HashMap<String, double[][][]>[], PyWavelets.DiscreteWavelet[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
iswtn2(HashMap<String, double[][]>[], PyWavelets.DiscreteWavelet[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
isXLATdestinationOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Locates the translation/key-file destination directory.
isXML - Variable in class gov.nih.mipav.model.file.FileVOI: Flag indicating whether the VOI should be written in MIPAV's XML format.
isYCbCr - Variable in class gov.nih.mipav.model.file.FileSVS
isYCbCr - Variable in class gov.nih.mipav.model.file.FileTiff
ISYGP - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
isZero() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation
isZero() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Checks if either the numerator or denominator are zero.
isZero() - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is equal to 0.
isZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
isZeroSpeed(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: An image element is never visited when its corresponding speed is zero.
isZeroToOneLUTAdj() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
isZip - Variable in class gov.nih.mipav.model.file.FileWriteOptions
isZip() - Method in class gov.nih.mipav.model.file.FileWriteOptions
it - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: index of the time variable being used.
it - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
it_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.it_node
ITail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
italicBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: checkbox for italic style.
iTalLabel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: talaraich intensity label*
iTdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
item - Variable in class gov.nih.mipav.model.algorithms.KDTree.res_node
item - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueItem
item - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MipavMenuItem: DOCUMENT ME!
Item - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
Item() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Item
Item(int, float, boolean, Point3f, Vector3f, Shape3D, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: Constructor.
Item(int, float, boolean, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Constructor.
ITEM_SEPARATOR - Static variable in class gov.nih.mipav.view.Preferences: The character that separates items (such as in the user file type definitions).
itemClose - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
itemClose - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemClose - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
itemClose - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
itemClose - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
itemCrop - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
itemHelp - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
itemHelp - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
itemLine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Check box menu item indicating if surface should be in line mode or full mode.
itemLine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Image line mode check box.
itemModifyGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemNormalize - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemOpenNewGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph
itemOpenSameGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemOutputDistance - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
itemPasteFunct - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemPrintGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemProps - Variable in class gov.nih.mipav.view.ViewJPopupPlugin: The uninstall menu item
itemProps - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
itemResetDomain - Variable in class gov.nih.mipav.view.ViewJFrameGraph
itemResetGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemResetRange - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemSaveGraph - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
itemShowGraph - Variable in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
itemShowPAAIDialog - Variable in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
itemShowVOIName - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.components.JPanelSigmas: Changes resolution normalization label based on whether or not the resolution normalization check box is checked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Method to handle item events - currently unused.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Watches the font descriptor checkboxes (bold/italic) and the font name (style) combo box, updates displayed font with each change.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Check to see if M-JPEG was selected so that the quality field will be enabled.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Changes labels based on whether or not check box is checked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Sets text fields enabled depending upon which item in the combo box is selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: itemStateChanged - method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: item staate changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Sets save, copy, and display flags based on whether or not they are selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Monitors the checkboxes and handles events according (enable/disable).
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Sets the flags for the checkboxes and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: If the M-JPEG option is selected, enable the compression quality field, otherwise turn it off.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Enables text boxes depending on selection in combo box.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: itemStateChanged - method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Sets text fields enabled depending upon which item in the combo box is selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Initial center position checkbox listener.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Sets text field enabled or disabled depending on source.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Changes labels based on whether or not check box is checked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Resets labels if checkboxes are checked or unchecked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Watches the font descriptor checkboxes (bold/italic) and the font name (style) combo box, updates displayed font with each change.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Check to see if cardioid was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Check to see if line was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Check to see if line was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Check to see if line was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Check to see if line was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Check to see if line was selected or deselected
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Changes chosen operator based on combo box's selected index.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Sets the flags for the checkboxes and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Resets labels if checkboxes are checked or unchecked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Resets labels if checkboxes are checked or unchecked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Changes scale based on resolution check box.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Changes scale based on resolution check box.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: item staate changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Resets labels if checkboxes are checked or unchecked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Sets text fields enabled depending upon which item in the combo box is selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Sets text fields enabled depending upon which item in the combo box is selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: itemStateChanged - method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Enables text boxes depending on selection in combo box.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Implementation of JDialogBase abstract method.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Sets labels and text fields enabled or disabled depending on checkbox.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Handle selection changes to the user defined value/preset radio buttons.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Changes labels based on whether or not check box is checked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: Sets corrected label if resolution checkbox is checked.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: item staate changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Respond to checkbox item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Sets the fill value text box to enabled or disabled depending on if the binary checkbox is selected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Monitors the checkboxes and handles events according (enable/disable).
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: itemStateChanged - unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: itemStateChanged - method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Updates the VOI when the checkboxes for title, boundary, processing, and opacity are changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Changes value of corrected scale based on resolution checkbox; sets buttons to enabled or disabled based on choice checkbox.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Method to handle item events.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Sets the flags for the checkboxes and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Sets the flags for the getOptionses and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Sets the flags for the checkboxes and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Sets the flags for the checkboxes and resets labels.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Check to see if M-JPEG was selected so that the quality field will be enabled.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: item state changed
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Sets border painted or not painted depending on if the button was selected or deselected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Sets border painted or not painted depending on if the button was selected or deselected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Sets border painted or not painted depending on if the button was selected or deselected.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Unchanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: itemStateChanged.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Does setBorderPainted for the appropriate button.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Does setBorderPainted for the appropriate button.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Sets the flags for the checkboxes.
itemStateChanged(ItemEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Sets border painted or not painted depending on if the button was selected or deselected.
itemsToRender - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
itemTableOutput - Variable in class gov.nih.mipav.view.ViewJFrameGraph
itemToInteger(Object) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Converts the combo box item to its corresponding integer.
itemTrim - Variable in class gov.nih.mipav.view.ViewJPopupVOI
itemType - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
iter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
iter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
iter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
iter - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
iter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
iter - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
iter - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
Iterables() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Iterables
iterate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Run one iteration of the fast marching algorithm.
iterate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Run one iteration of the fast marching algorithm.
iterate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Run one iteration of the fast marching algorithm.
iterate(byte[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
iterate(byte[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
iterate(float, float, float, float, byte[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
iterate(float, float, float, float, byte[], int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
iterateCoarse() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Apply a single iteration of the region-growing fast march.
ITERATED_FACET_MODEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
ITERATED_FACET_MODEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
iteratedFacetModel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
iterateDistanceTransform() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Apply a single iteration of the annulus construction.
iteratedModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
iterateEvolution() - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Apply a single iteration of the evolution.
iteration - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
iteration - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
iteration - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Solver status.
ITERATION_POWER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
iteration_start_time_in_secs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
iteration_summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
iteration_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
IterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.IterationCallback
iterationLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
iterationnum - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Number of iterations of the diffusion.
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Number of iterations of the diffusion.
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Number of iterations of the diffusion.
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Number of iterations of the diffusion.
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: number of times to filter the image.
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The total number of iterations
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth: The number of iterations to perform
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: number of times to filter the image.
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
iterations - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: number of iterations in the deconvolution:
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Total number of iterations
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: The number of iterations to perform
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Number of iterations for smoothing formula.
iterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
iterations2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Iterations of the steepest descent method in L1 steering kernel regression in skr2L1_regular in STEERING_KERNEL_SECOND_ORDER_L1_NORM
iterations2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Iterations in skr2L1_regular for steepest descent method in L1 steering kernel regression in STEERING_KERNEL_SECOND_ORDER_L1_NORM.
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Dilation iteration times.
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Dilation iteration times.
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Dilation iteration times.
iterationsD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Dilation iteration times.
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Erosion iteration times.
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Erosion iteration times.
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Erosion iteration times.
iterationsE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Erosion iteration times.
iterationsErodeDilate - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
iterationsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
iterationsOpen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
iterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
iterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
iterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Text field for getting iterations.
IterationSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
iterationText - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
IterationZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
ITERATIVE_SCHUR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
ITERATIVE_STEERING_KERNEL_SECOND_ORDER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ITERATIVE_STEERING_KERNEL_SECOND_ORDER_IRREGULAR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
iterativeGlobalSmoothing - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
iterativeGlobalSmoothing - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: 1.5 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
iterativeGlobalSmoothing2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Global smoothing parameter in skr2L1_regular in STEERING_KERNEL_SECOND_ORDER_L1_NORM
iterativeGlobalSmoothing2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
iterativeKernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
iterativeKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
IterativeSchurComplementSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver
IterativeSchurComplementSolverTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
IterativeSchurComplementSolverTestNormalProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
IterativeSchurComplementSolverTestNormalProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
IterativeSchurComplementSolverTestProblemWithNoFBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
IterativeSchurComplementSolverTestProblemWithNoFBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
iterator() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Returns an iterator over the pixels of this image.
iterator() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: Return iterator to non-zero elements in the matrix.
iterator(int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Returns an Iterator for the specified area of the image.
Iterators() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators
iterCt - Variable in class gov.nih.mipav.model.algorithms.LsqFit
iterIrregular - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
IterRefine - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
IterRefine_t(int) - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t
iterRefineNum - Variable in enum gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t
iterRefineNum() - Method in enum gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t
iters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Number of iterations.
iters - Variable in class gov.nih.mipav.model.algorithms.FitGaussian
iters - Variable in class gov.nih.mipav.model.algorithms.FitLaplace
iters - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Iterations performed
iters - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar containing the number of iterations until termination.
iters - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar containing the number of iterations until termination.
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: or if the source image is to be replaced.
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: or if the source image is to be replaced.
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
iters - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
itersCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
itersClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
itersD - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: or if the source image is to be replaced.
itersD - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: or if the source image is to be replaced.
itersD - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: or if the source image is to be replaced.
itersD - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: or if the source image is to be replaced.
itersD - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: or if the source image is to be replaced.
itersE - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
itersE - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
itersE - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
itersE - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
itersE - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
itersErode - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
itersOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
iterSteering2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
Itest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
ITEST1(int, int, int, int, int, int, boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
itncount - Variable in class gov.nih.mipav.model.algorithms.NESolve
itnlim - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
itotal - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
itotal - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
itr - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
itr - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
itsmry(double[], int[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
iTXt - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
iu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
IU - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
iv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
iv - Variable in class gov.nih.mipav.model.algorithms.NL2sol
iv - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
ival - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
ival - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
IVCntrstAgent - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 72 - 17 bytes.
iwork - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
iwork1 - Variable in class gov.nih.mipav.model.algorithms.ODE
iwork1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
iwrk - Variable in class gov.nih.mipav.model.algorithms.curfit
iwt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
iwtsgn - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
ix - Static variable in class gov.nih.mipav.model.algorithms.Fastfit
ix - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint: < o coordinate (octave).
Ix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
Ix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
ix_lsvmin - Variable in class gov.nih.mipav.model.algorithms.NL2sol
Ix2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
iXdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
iXres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
ixy(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
Ixy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
iy - Static variable in class gov.nih.mipav.model.algorithms.Fastfit
iy - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint: < Integer unnormalized x coordinate.
Iy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
Iy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
Iy2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
iYdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
iYres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
iz - Static variable in class gov.nih.mipav.model.algorithms.Fastfit
izamax_(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
iZdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
IZigZagTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
IZigZagTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
izmax1_slu(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
iZres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

J

j - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
j - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
j - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
j - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
j - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
J - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
J - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker
J - Variable in class gov.nih.mipav.model.algorithms.LsqFit
J_BUF_MODE() - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_BUF_MODE
J_COLOR_SPACE() - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
J_COLOR_TRANSFORM() - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_COLOR_TRANSFORM
j_common_ptr - Variable in class gov.nih.mipav.model.file.libjpeg
J_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
J_DCT_METHOD() - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD
j_decompress_ptr - Variable in class gov.nih.mipav.model.file.libjpeg
J_DITHER_MODE() - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE
J_MESSAGE_CODE(String) - Constructor for enum gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
J_ZBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
j2 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
J2K_CCP_CBLKSTY_LAZY - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CCP_CBLKSTY_RESET - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Selective arithmetic coding bypass
J2K_CCP_CBLKSTY_SEGSYM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Predictable termination
J2K_CCP_CBLKSTY_TERMALL - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Reset context probabilities on coding pass boundaries
J2K_CCP_CBLKSTY_VSC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Termination on each coding pass
J2K_CCP_CSTY_PRT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CCP_QNTSTY_NOQNT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Segmentation symbols are used
J2K_CCP_QNTSTY_SIQNT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CP_CSTY_EPH - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CP_CSTY_PRT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_CP_CSTY_SOP - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
j2k_destroy_cstr_index(FileJPEG2000.opj_codestream_index_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
j2k_memory_marker_handler_tab - Variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_MS_CBD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < COM marker value
J2K_MS_COC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < COD marker value
J2K_MS_COD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < SIZ marker value
J2K_MS_COM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < CRG marker value
J2K_MS_CRG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < EPH marker value
J2K_MS_EOC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < SOD marker value
J2K_MS_EPB - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < EPC marker value (Part 11: JPEG 2000 for Wireless)
J2K_MS_EPC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < UNKNOWN marker value
J2K_MS_ESD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < EPB marker value (Part 11: JPEG 2000 for Wireless)
J2K_MS_INSEC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < SEC marker value (Part 8: Secure JPEG 2000)
J2K_MS_MCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < CBD marker value
J2K_MS_MCO - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < MCT marker value
J2K_MS_MCT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < MCC marker value
J2K_MS_PLM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < TLM marker value
J2K_MS_PLT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < PLM marker value
J2K_MS_POC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < QCC marker value
J2K_MS_PPM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < PLT marker value
J2K_MS_PPT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < PPM marker value
J2K_MS_QCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < QCD marker value
J2K_MS_QCD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < RGN marker value
J2K_MS_RED - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < ESD marker value (Part 11: JPEG 2000 for Wireless)
J2K_MS_RGN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < COC marker value
J2K_MS_SEC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < RED marker value (Part 11: JPEG 2000 for Wireless)
J2K_MS_SIZ - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < EOC marker value
J2K_MS_SOC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < the decoding process has encountered an error (FIXME warning V1 = 0x0080)
J2K_MS_SOD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < SOT marker value
J2K_MS_SOP - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < PPT marker value
J2K_MS_SOT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < SOC marker value
J2K_MS_TLM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < POC marker value
J2K_MS_UNK - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < MCO marker value
J2K_READ_EPB - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_READ_EPC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_READ_ESD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_READ_INSEC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_READ_RED - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_READ_SEC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
J2K_STATE_EOC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < the decoding process must not expect a EOC marker because the codestream is truncated
J2K_STATE_MH - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < a SIZ marker is expected
J2K_STATE_MHSIZ - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < a SOC marker is expected
J2K_STATE_MHSOC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < a SOC marker is expected
J2K_STATE_NEOC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < the EOC marker has just been read
J2K_STATE_TPH - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < the decoding process is in a tile part header and expects a SOT marker
J2K_STATE_TPHSOT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < the decoding process is in the main header
jac - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
Jac(double, CVODES.NVector, CVODES.NVector, double[][], CVODES.UserData, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
JACANP(double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
jacB - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRecB
JacB(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, double[][], CVODES.UserData, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
jacBS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRecB
JacBTestMode(double, CVODES.NVector, CVODES.NVector, CVODES.NVector, double[][], CVODES.UserData, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
jacdif(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
jacdif(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
jacDQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
JACIN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JACOBI - gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType
jacobi_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
jacobi_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
jacobian - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
jacobian - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
jacobian - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
jacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 2D array of doubles of dimension nPts by max(4,param) containing the main part of the covariance matrix (Jtranspose * J)inverse, where J is the Jacobian matrix computed at a.
jacobian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
jacobian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.Fixture
jacobian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction3
jacobian_block_ptrs - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
jacobian_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
jacobian_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
jacobian_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
jacobian_layout_storage_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
jacobian_offsets_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
jacobian_scaling_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
jacobian_scratch_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScratchEvaluatePreparer
jacobian_writer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
jacobian1_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
jacobian2_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
JacobianElliptic - Class in gov.nih.mipav.model.algorithms: Calculate Jacobian Elliptic functions.
JacobianElliptic() - Constructor for class gov.nih.mipav.model.algorithms.JacobianElliptic
JacobianElliptic(double, double, double[], double[], double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.JacobianElliptic
JacobianElliptic(double, double, double, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.JacobianElliptic
jacobianEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar containing the number of function evaluations caused by computing Jacobians with difference methods.
jacobianEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar containing the number of function evaluations caused by computing Jacobians with difference methods.
jacobians - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
jacobiIters1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: jacobiIters1 and jacobiIter2 are only used with gain correction.
jacobiIters1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: jacobiIters1 and jacobiIter2 are only used with gain field correction.
jacobiIters1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: jacobiIters1 and jacobiIter2 are only used with gain correction.
jacobiIters2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
jacobiIters2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
jacobiIters2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
JACSUC(double, int, double[], double[], double, double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JACSUM(double, int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JacTestMode(double, CVODES.NVector, CVODES.NVector, double[][], CVODES.UserData, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES: Jacobian routine.
JAINC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JamaMatrix - Class in gov.nih.mipav.model.structures.jama: Wrapper around Jama package, @see src/Jama/ Provides access to features unique to Jama lib, otherwise use WildMagic Matrix3f, Matrix4f and GMatrix classes.
JamaMatrix(double[][]) - Constructor for class gov.nih.mipav.model.structures.jama.JamaMatrix
JamaMatrix(int, int) - Constructor for class gov.nih.mipav.model.structures.jama.JamaMatrix: Initial value set to 0.0 for all elements
JamaMatrix(int, int, double) - Constructor for class gov.nih.mipav.model.structures.jama.JamaMatrix
JamaMatrix(Matrix) - Constructor for class gov.nih.mipav.model.structures.jama.JamaMatrix: Convert results from Jama lib
JAPAR7(double[], double, double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JAPHYC() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
jarClassLoader - Variable in class gov.nih.mipav.view.ViewUserInterface: Class/resource loader for plugins that are in jars
JarClassLoader - Class in gov.nih.mipav.plugins
JarClassLoader(ClassLoader) - Constructor for class gov.nih.mipav.plugins.JarClassLoader
JarClassLoader(URL[]) - Constructor for class gov.nih.mipav.plugins.JarClassLoader
JarClassLoader(URL[], ClassLoader) - Constructor for class gov.nih.mipav.plugins.JarClassLoader
JarClassLoader(URL[], ClassLoader, URLStreamHandlerFactory) - Constructor for class gov.nih.mipav.plugins.JarClassLoader
JArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
JATYP - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
javaImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
javaImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
JavaStrToCStr(String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
JBLOCK - Variable in class gov.nih.mipav.model.file.libjpeg
JBLOCKARRAY - Variable in class gov.nih.mipav.model.file.libjpeg
JBLOCKIMAGE - Variable in class gov.nih.mipav.model.file.libjpeg
JBLOCKROW - Variable in class gov.nih.mipav.model.file.libjpeg
JBUF_CRANK_DEST - gov.nih.mipav.model.file.libjpeg.J_BUF_MODE
JBUF_PASS_THRU - gov.nih.mipav.model.file.libjpeg.J_BUF_MODE
JBUF_SAVE_AND_PASS - gov.nih.mipav.model.file.libjpeg.J_BUF_MODE
JBUF_SAVE_SOURCE - gov.nih.mipav.model.file.libjpeg.J_BUF_MODE
JButtonCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D.JButtonCellRenderer
JButtonCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D.JButtonCellRenderer
JButtonCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D.JButtonCellRenderer
JCFIM5(int[], int[], int[], int[], double[], int[], double[][], int, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], double[], double[], double[], double[], double[], boolean, double[], double[], int[], double, int[], double[], int, int, int, int, int[], double[], double[], double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
JCOEF - Variable in class gov.nih.mipav.model.file.libjpeg
JCOEFPTR - Variable in class gov.nih.mipav.model.file.libjpeg
jcopy_sample_rows(byte[][], int, byte[][], int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
jcopy_sample_rows(short[][], int, short[][], int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
JCOPYRIGHT - Static variable in class gov.nih.mipav.model.file.libjpeg
JCS_BG_RGB - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_BG_YCC - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_CMYK - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_GRAYSCALE - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_RGB - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_UNKNOWN - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_YCbCr - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCS_YCCK - gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE
JCT_NONE - gov.nih.mipav.model.file.libjpeg.J_COLOR_TRANSFORM
JCT_SUBTRACT_GREEN - gov.nih.mipav.model.file.libjpeg.J_COLOR_TRANSFORM
jdamax(int, double[], int) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
jdamax(int, DoubleDouble[], int) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
JDCT_FLOAT - gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD
JDCT_IFAST - gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD
JDCT_ISLOW - gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD
JDCT_ISLOW - Static variable in class gov.nih.mipav.model.file.libjpeg
JDialog3DMosaicTo4DSlices - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialog3DMosaicTo4DSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialog3DMosaicTo4DSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Creates new Mosaic To Slices dialog.
JDialog4DImageCalculator - Class in gov.nih.mipav.view.dialogs
JDialog4DImageCalculator() - Constructor for class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: Empty constructor needed for dynamic instantiation (used during scripting).
JDialog4DImageCalculator(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: Creates new image calculator dialog and displays.
JDialogAAMClassification - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class is the driver for the AAM classification.
JDialogAAMClassification(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Constructor. the parent frame
JDialogAAMClassification.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogAAMClassification.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogAAMClassification.Range - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Ending slice start and end indexes.
JDialogAAMClassification.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: shape descriptor class.
JDialogAAMClassificationExt - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class is the driver for the AAM classification.
JDialogAAMClassificationExt(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Constructor. the parent frame
JDialogAAMClassificationExt.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogAAMClassificationExt.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogAAMClassificationExt.Range - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Ending slice start and end indexes.
JDialogAAMClassificationExt.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: shape descriptor class.
JDialogAAMplusSVM - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the combined Atlas based AAM and SVM model to automatically segment the MRI prostate.
JDialogAAMplusSVM(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Constructor
JDialogAAMplusSVM.ImageAttribute - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Image attribute for AAM model.
JDialogAAMplusSVM.ImageModel - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Image model of AAM.
JDialogAAMplusSVM.ImageModelSVM - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Image SVM model.
JDialogAAMplusSVM.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Model string struct.
JDialogAAMplusSVM.Range - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Segmentation processing range
JDialogAAMplusSVM.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Shape factor struct.
JDialogAAMplusSVM.SliceSetString - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: AAM model slice struct.
JDialogACPC - Class in gov.nih.mipav.view.dialogs: Dialog to enter points for creating an ACPC image.
JDialogACPC(ViewJFrameTriImage, ModelImage, ModelImage, TalairachTransformInfo, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogACPC: This method creates a dialog for selecting markers used for generating an AC-PC aligned view image from an original image
JDialogAction - Class in gov.nih.mipav.view.graphVisualization
JDialogAction(MipavGraphPanel, Node, String, boolean) - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogAction
JDialogActiveContoursWithoutEdges - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogActiveContoursWithoutEdges() - Constructor for class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogActiveContoursWithoutEdges(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Used primarily for the script to store variables and run the algorithm.
JDialogActiveContoursWithoutEdges(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Creates a new JDialogActiveContoursWithoutEdges object.
JDialogAdaptiveKuwaharaFilter - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogAdaptiveKuwaharaFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAdaptiveKuwaharaFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Creates new dialog for entering parameters for Adaptive Kuwahara Filter.
JDialogAddMargins - Class in gov.nih.mipav.view.dialogs: Creates the dialog to add margins around the image.
JDialogAddMargins() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAddMargins: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAddMargins(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAddMargins: Constructor that makes dialog and displays it.
JDialogAddNode - Class in gov.nih.mipav.view.graphVisualization: Dialog used by the MipavGraphPanel to add a node to the graph, or to modify the Notes attribute of a node.
JDialogAddNode(MipavGraphPanel, Node, String, boolean, boolean) - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogAddNode
JDialogAddNode(MipavGraphPanel, String, boolean) - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogAddNode
JDialogAGCIE - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogAGCIE() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAGCIE: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAGCIE(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAGCIE: Creates new dialog for entering parameters for AGCIE enhanced image.
JDialogAGVF - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the snake-like algorithm.
JDialogAGVF(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAGVF: Creates new dialog for finding the GVF.
JDialogAHE - Class in gov.nih.mipav.view.dialogs: Adaptive Histogram Equlization.
JDialogAHE() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAHE: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAHE(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAHE: Creates a new JDialogAHE object.
JDialogAHElocal - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogAHElocal() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAHElocal: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAHElocal(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates a new JDialogAHElocal object.
JDialogAINDANE - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogAINDANE() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAINDANE: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAINDANE(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAINDANE: Creates new dialog for entering parameters for AINDANE.
JDialogAnalyzeNIFTIChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to write an analyze file , interfile file, or a nifti file.
JDialogAnalyzeNIFTIChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Creates new dialog.
JDialogAnimate - Class in gov.nih.mipav.view.dialogs: Dialog to get scale factor and interpolation method to create initial image forwarded to ViewJFrameAnimate.
JDialogAnimate(Frame, ModelImage, ModelLUT, ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate: Creates a new JDialogAnimate object.
JDialogAnimate(Frame, ModelImage, ModelLUT, ModelImage, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate: Creates a new JDialogAnimate object.
JDialogAnimate.CancelListener - Class in gov.nih.mipav.view.dialogs: Does nothing at the moment.
JDialogAnimate.OkBorderListener - Class in gov.nih.mipav.view.dialogs: Pick up the selected color and change the image border color.
JDialogAnisotropicDiffusion - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogAnisotropicDiffusion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAnisotropicDiffusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Creates a new JDialogAnisotropicDiffusion object.
JDialogAnnotation - Class in gov.nih.mipav.view.dialogs: Dialog for creating new/editing existing on-screen annotations.
JDialogAnnotation(ModelImage, VOI, int, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation: Constructs a new annotation dialog, displays it, and turns recording on.
JDialogAnnotation(ModelImage, VOI, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation
JDialogAnnotation.CancelListener - Class in gov.nih.mipav.view.dialogs: Does nothing.
JDialogAnnotation.OkColorListener - Class in gov.nih.mipav.view.dialogs: Pick up the selected color and call method to change the VOI color.
JDialogAnnotation.UpdateTextAction - Class in gov.nih.mipav.view.dialogs: Update the displayed text accourding to the current settings of the window.
JDialogAnonymizeDirectory - Class in gov.nih.mipav.view.dialogs: Visual Interface to anonymize DICOM images by the directory-full.
JDialogAnonymizeDirectory(String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: builds and packs the frame. does not set it visible.
JDialogAnonymizeDirectory.AnonymizeDicomDirectories - Class in gov.nih.mipav.view.dialogs: This thread anonymization processes all the Dicom files in the submitted source directories and places them into the submitted destination directory.
JDialogAnonymizeImage - Class in gov.nih.mipav.view.dialogs: REALLY like JDialogRemoveSlices except it does not have an "algorithm"
JDialogAnonymizeImage() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
JDialogAnonymizeImage(Dialog, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: constructor to build a dialog allowing user to find which tags are available to anonymize.
JDialogAnonymizePresets - Class in gov.nih.mipav.view.dialogs
JDialogAnonymizePresets(Dialog, boolean, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
JDialogAntigradient2 - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogAntigradient2() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAntigradient2(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Creates a new JDialogAntigradient2 object.
JDialogAnyTwoImagesSNR - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images SNR Algorithms are executed in their own thread.
JDialogAnyTwoImagesSNR(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Creates a new JDialogFRET object.
JDialogAnyTwoImagesSNR(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Creates new dialog.
JDialogAutoCorrelation - Class in gov.nih.mipav.view.dialogs: Dialog to call AlgorithmAutoCorrelation.
JDialogAutoCorrelation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAutoCorrelation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Constructs new transform dialog and sets up GUI components.
JDialogAutoCovariance - Class in gov.nih.mipav.view.dialogs: Dialog to call AlgorithmAutoCovariance.
JDialogAutoCovariance() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAutoCovariance(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Constructs new transform dialog and sets up GUI components.
JDialogAutoSeedWatershed - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogAutoSeedWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogAutoSeedWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Creates new dialog for entering parameters for Auto Seed Watershed.
JDialogAVIChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose what type of compression to use when saving to AVI format.
JDialogAVIChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Creates new dialog.
JDialogAVIChoice(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Creates a new JDialogAVIChoice object.
JDialogBarrelDistortion - Class in gov.nih.mipav.view.dialogs: Dialog for correcting barrel and/or pincushion distortion
JDialogBarrelDistortion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Empty constructor needed for dynamic instantiation.
JDialogBarrelDistortion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Construct the barrel/pin cushion correction dialog.
JDialogBase - Class in gov.nih.mipav.view.dialogs: This class is the base for all the other dialogs.
JDialogBase() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that sets the dialog to not modal.
JDialogBase(boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that only sets the dialog to modal or not modal.
JDialogBase(Dialog, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that forwards the parent dialog whether or not the dialog is modal.
JDialogBase(Dialog, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that forwards the parent dialog whether or not the dialog is modal.
JDialogBase(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JDialogBase(Frame, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JDialogBase.CancelAction - Class in gov.nih.mipav.view.dialogs: Handler for keys which should invoke the Cancel button (such as ESC).
JDialogBase.HelpAction - Class in gov.nih.mipav.view.dialogs: Handler for keys which should invoke the Help button (such as F1).
JDialogBase.OKAction - Class in gov.nih.mipav.view.dialogs: Handler for keys which should invoke the OK button (such as ENTER).
JDialogBGAndFGDistanceMap - Class in gov.nih.mipav.view.dialogs
JDialogBGAndFGDistanceMap() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
JDialogBGAndFGDistanceMap(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
JDialogBGDistanceMap - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm for BG distance map.
JDialogBGDistanceMap() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBGDistanceMap(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Creates new dialog for finding bg distance map.
JDialogBilateralFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBilateralFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Empty constructor needed for dynamic instantiation.
JDialogBilateralFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Construct the bilateral filter dialog.
JDialogBiorthogonalWavelets - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBiorthogonalWavelets() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Empty constructor needed for dynamic instantiation.
JDialogBiorthogonalWavelets(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Construct the biorthogonal wavelets dialog.
JDialogBlankImage - Class in gov.nih.mipav.view.dialogs: Dialog to get image type for blank image.
JDialogBlankImage(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBlankImage: Creates new dialog to get image type of blank image.
JDialogBM3D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBM3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBM3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBM3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBM3D: Creates a new JDialogBM3D object.
JDialogBorderClearing - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBorderClearing() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBorderClearing(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Creates new Border clearing dialog.
JDialogBottomHat - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBottomHat() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBottomHat: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBottomHat(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBottomHat: Constructor.
JDialogBoundaryAttenuation - Class in gov.nih.mipav.view.dialogs: Dialog for an algorithm which reduces the intensity of an image near the boundary of the VOIs within an image volume.
JDialogBoundaryAttenuation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Empty constructor needed for dynamic instantiation.
JDialogBoundaryAttenuation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Set up the algorithm dialog.
JDialogBoundingVOIs - Class in gov.nih.mipav.view.dialogs
JDialogBoundingVOIs(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Creates new dialog for entering parameters for algorithm.
JDialogBoundingVOIs(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Creates new dialog for entering parameters for algorithm.
JDialogBoxCount - Class in gov.nih.mipav.view.dialogs: Dialog to call AlgorithmBoxCount.
JDialogBoxCount() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoxCount: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBoxCount(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBoxCount: Constructs new transform dialog and sets up GUI components.
JDialogBrainSurfaceExtractor - Class in gov.nih.mipav.view.dialogs: This dialog collects parameters for the BSE algorithm and then starts it up.
JDialogBrainSurfaceExtractor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBrainSurfaceExtractor(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Sets the appropriate variables.
JDialogBrightness - Class in gov.nih.mipav.view.dialogs: This class creates a simple dialog in which the user can specify a brightness integer and a contrast float using sliders.
JDialogBrightness(JFrame, ViewJComponentAnimate, int, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBrightness: Creates new dialog for entering brightness and contrast.
JDialogBrightness(JFrame, ViewJComponentColocalizationEM, int, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBrightness: Creates new dialog for entering brightness and contrast.
JDialogBrightness(JFrame, ViewJComponentColocalizationRegression, int, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBrightness: Creates new dialog for entering brightness and contrast.
JDialogBRISK - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogBRISK() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBRISK: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogBRISK(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBRISK: Creates new dialog for entering parameters for BRISK.
JDialogBSmooth - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm for smoothing VOIs.
JDialogBSmooth(Frame, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBSmooth: Creates new dialog for entering parameters for algorithm.
JDialogBSmooth(Frame, VOIManagerInterface, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBSmooth: Creates new dialog for entering parameters for algorithm.
JDialogBSnake - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogBSnake(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBSnake: Creates new dialog for entering parameters for algorithm.
JDialogBulkImageCalculator - Class in gov.nih.mipav.view.dialogs
JDialogBulkImageCalculator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: empty constructor..needed for scripting
JDialogBulkImageCalculator(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
JDialogBurnParameter - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: DOCUMENT ME!
JDialogBurnParameter(JPanelProbe, ViewJFrameBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: Creates a new JDialogBurnParameter object.
JDialogCannyEdgeDetection - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogCannyEdgeDetection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCannyEdgeDetection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Creates new dialog for entering parameters for Canny edge detection.
JDialogCaptureScreen - Class in gov.nih.mipav.view.dialogs: Dialog for creating and saving a screen capture to a TIFF file.
JDialogCaptureScreen(ViewJFrameImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Creates new dialog for screen capture.
JDialogCaptureScreen(ViewJFrameImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreen
JDialogCaptureScreen.GlassPaneListener - Class in gov.nih.mipav.view.dialogs: Listener for the glass panes.
JDialogCaptureScreen.ImageConverter - Class in gov.nih.mipav.view.dialogs: changes an image to a Transferable
JDialogCaptureScreen.MyGlassPane - Class in gov.nih.mipav.view.dialogs: Our special glass panes draw rectangles based on how the user traces them using the mouse.
JDialogCaptureScreen.WindowProperties - Enum in gov.nih.mipav.view.dialogs
JDialogCaptureScreens - Class in gov.nih.mipav.view.dialogs: Dialog (invisible) for capturing slices of a 3d/4d image into a new image.
JDialogCaptureScreens(ViewJFrameImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: Invisible dialog used through script or from the Main frame that captures slices of a 3d/4d Image into a new frame.
JDialogCenterOfMass - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogCenterOfMass() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCenterOfMass(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Creates a new JDialogCenterOfMass object.
JDialogCenterOfMass.CheckValueAction - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogCenterOfMassRGB - Class in gov.nih.mipav.view.dialogs: Title: JDialogCenterOfMassRGB
JDialogCenterOfMassRGB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCenterOfMassRGB(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Used primarily for the script to store variables and run the algorithm.
JDialogCenterOfMassRGB(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Creates a new JDialogCenterOfMassRGB object.
JDialogCentroidThreshold - Class in gov.nih.mipav.view.dialogs: Creates the dialog to input inital centroid values and threshold value for each class for AlgorithmMSpectralFuzzyCMeans.
JDialogCentroidThreshold(Frame, String, int, float, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: Constructor.
JDialogChangeMaskNumber - Class in gov.nih.mipav.view.dialogs: This is a dialog that allows the user to change the mask number on the buttons
JDialogChangeMaskNumber(JButton, JButton, ArrayList<Integer>, Color[], ModelLUT, ModelImage, int, Vector<Integer>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
JDialogCheckerBoard - Class in gov.nih.mipav.view.dialogs: Dialog to get the row and column numbers of checkerboard squares
JDialogCheckerBoard(Frame, ViewJComponentEditImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: Creates new dialog and sets up GUI components.
JDialogCheckerBoard(Frame, ViewJComponentRegistration) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: Creates new dialog and sets up GUI components.
JDialogCheckerBoard.Animate - Class in gov.nih.mipav.view.dialogs
JDialogChooseOverlay(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: Creates a new JDialogChooseOverlay object.
JDialogCircleGeneration - Class in gov.nih.mipav.view.dialogs: Dialog to create an image with randomly spaced, aggregated, regular or uniform, or constrained circles of the same size
JDialogCircleGeneration(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: Creates new dialog.
JDialogCircleToRectangle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of circle center and point on circle curve and output xDim and yDim of rectangle created from transformed circle.
JDialogCircleToRectangle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Creates a new JDialogCircleToRectangle object.
JDialogCircleToRectangle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Creates new dialog.
JDialogCircularSectorToRectangle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of 4 bounding sector points and output xDim and yDim of rectangle created from transformed sector.
JDialogCircularSectorToRectangle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Creates a new JDialogCircularSectorToRectangle object.
JDialogCircularSectorToRectangle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Creates new dialog.
JDialogClose - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogClose() - Constructor for class gov.nih.mipav.view.dialogs.JDialogClose: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogClose(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogClose: Constructor.
JDialogCoherenceEnhancingDiffusion - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call a specified diffusion algorithm.
JDialogCoherenceEnhancingDiffusion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCoherenceEnhancingDiffusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Initialize the dialog.
JDialogColocalizationEM - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Identify colocalized pixels Algorithms are executed in their own thread.
JDialogColocalizationEM() - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogColocalizationEM(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Creates a new JDialogColocalizationEM object.
JDialogColocalizationEM(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Creates new dialog.
JDialogColocalizationRegression - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Calculate Pearson's correlation coefficient Calculate P value for this correlation coefficient Identify colocalized pixels Algorithms are executed in their own thread.
JDialogColocalizationRegression() - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogColocalizationRegression(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Creates a new JDialogColocalizationRegression object.
JDialogColocalizationRegression(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Creates new dialog.
JDialogColorEdge - Class in gov.nih.mipav.view.dialogs: GUI for entering parameters for the Color Edge algorithm and making it scriptable.
JDialogColorEdge() - Constructor for class gov.nih.mipav.view.dialogs.JDialogColorEdge: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogColorEdge(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColorEdge: Creates an modal extension of JDialogBase, using the title, "Local Normalization".
JDialogColorSaturation - Class in gov.nih.mipav.view.dialogs: Dialog for adjusting color saturation
JDialogColorSaturation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Empty constructor needed for dynamic instantiation.
JDialogColorSaturation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Construct the saturation adjustment dialog.
JDialogConcat - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogConcat() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcat: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConcat(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcat: Creates new concatenatation dialog.
JDialogConcatMult2Dto3D - Class in gov.nih.mipav.view.dialogs
JDialogConcatMult2Dto3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: empty constructor..needed for scripting
JDialogConcatMult2Dto3D(Frame, ArrayList<ModelImage>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
JDialogConcatMult2Dto3D.JButtonCellRenderer - Class in gov.nih.mipav.view.dialogs
JDialogConcatMult3Dto3D - Class in gov.nih.mipav.view.dialogs
JDialogConcatMult3Dto3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: empty constructor..needed for scripting
JDialogConcatMult3Dto3D(Frame, ArrayList<ModelImage>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
JDialogConcatMult3Dto3D.JButtonCellRenderer - Class in gov.nih.mipav.view.dialogs
JDialogConcatMult3Dto4D - Class in gov.nih.mipav.view.dialogs
JDialogConcatMult3Dto4D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: empty constructor..needed for scripting
JDialogConcatMult3Dto4D(Frame, ArrayList<ModelImage>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
JDialogConcatMult3Dto4D.JButtonCellRenderer - Class in gov.nih.mipav.view.dialogs
JDialogConstrainedOAR3D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithm RegistrationOAR3D.
JDialogConstrainedOAR3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConstrainedOAR3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Creates new dialog for user to choose type of linear image registration algorithm to run.
JDialogContrastEnhancementUsingExposureFusion - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogContrastEnhancementUsingExposureFusion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogContrastEnhancementUsingExposureFusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Creates new dialog for entering parameters for contrast enhancement using exposure fusion.
JDialogConvergenceField - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogConvergenceField() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConvergenceField(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Creates new dialog for entering parameters for creating convergence field image.
JDialogConvert3Dto4D - Class in gov.nih.mipav.view.dialogs: Dialog to call the AlgorithmConvert3Dto4D to convert a 3D data set into a 4D data set.
JDialogConvert3Dto4D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConvert3Dto4D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Creates new dialog, but dialog is not visible.
JDialogConvert4Dto3D - Class in gov.nih.mipav.view.dialogs: Dialog to call the AlgorithmConvert4Dto3D to convert the current image from a 4D one to a 3D one.
JDialogConvert4Dto3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConvert4Dto3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Creates new dialog, but dialog is not visible.
JDialogConvert4DtoMultiple3D - Class in gov.nih.mipav.view.dialogs
JDialogConvert4DtoMultiple3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConvert4DtoMultiple3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D: Creates new dialog, but dialog is not visible.
JDialogConvert4DtoRGB - Class in gov.nih.mipav.view.dialogs
JDialogConvert4DtoRGB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Empty Constructor (needed for scripting)
JDialogConvert4DtoRGB(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Constructor
JDialogConvertType - Class in gov.nih.mipav.view.dialogs: Simple dialog to convert the type of an image.
JDialogConvertType() - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvertType: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogConvertType(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvertType: Creates new dialog for converting type of image.
JDialogConvertVOITBI - Class in gov.nih.mipav.view.renderer.WildMagic.TBI: This dialog converts the VOI lines or VOI contour lines into .ply file format as the point cloud based file.
JDialogConvertVOITBI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Constructor for Merging the 3 VOIs and save into one cloudy points file.
JDialogConvexHull2D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm for smoothing VOIs.
JDialogConvexHull2D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: Creates new dialog for entering parameters for algorithm.
JDialogConvexHull2D(Frame, VOIManagerInterface, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: Creates new dialog for entering parameters for algorithm.
JDialogCopyFiles - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogCopyFiles(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Constructor.
JDialogCorrectSpacing - Class in gov.nih.mipav.view.dialogs: Algorithm to adjust image volume for cases when the slice spacing is not equal to the slice thickness.
JDialogCorrectSpacing() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCorrectSpacing(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Constructor that creates new dialog for Correct Spacing.
JDialogCreateHEDpngFiles - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogCreateHEDpngFiles(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Constructor.
JDialogCreateHEDpngFilesTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogCreateHEDpngFilesTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Constructor.
JDialogCreateProbMap - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This code is used to create VOI from Alexnet generated energy maps.
JDialogCreateProbMap(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Constructor.
JDialogCreateProbMap64 - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogCreateProbMap64(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Constructor.
JDialogCreateProbMapConvert - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogCreateProbMapConvert(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Constructor.
JDialogCrop - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the crop algorithm.
JDialogCrop() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCrop: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCrop(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCrop: Used primarily for the script to store variables and run the algorithm.
JDialogCrop(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCrop: Creates new dialog for cropping image.
JDialogCrop(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCrop: Constructor for doing non-interactive cropping (border will be zero) primarily used by VOI's pop-up menu
JDialogCropBoundaryParam - Class in gov.nih.mipav.view.dialogs: Creates the dialog to crop pixels around the image.
JDialogCropBoundaryParam() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCropBoundaryParam(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Constructor that makes dialog and displays it.
JDialogCropPointParam - Class in gov.nih.mipav.view.dialogs: Creates the dialog to crop pixels around the selected point.
JDialogCropPointParam() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCropPointParam(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Constructor that makes dialog and displays it.
JDialogCropTiltedCuboid - Class in gov.nih.mipav.view.dialogs: Creates the dialog to crop pixels around the 8 selected tilted cuboid points.
JDialogCropTiltedCuboid() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCropTiltedCuboid(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Constructor that makes dialog and displays it.
JDialogCropTiltedRectangle - Class in gov.nih.mipav.view.dialogs: Creates the dialog to crop pixels around the 4 selected tilted rectangle points.
JDialogCropTiltedRectangle() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCropTiltedRectangle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Constructor that makes dialog and displays it.
JDialogCT - Class in gov.nih.mipav.view.dialogs: Simple dialog for CT window presets.
JDialogCT(ViewJPanelHistoLUT, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCT
JDialogCTHistoLUT - Class in gov.nih.mipav.view.dialogs: Simple dialog for CT window presets.
JDialogCTHistoLUT(ViewJComponentHistoLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Creates new dialog and sets up GUI components.
JDialogCTPreset - Class in gov.nih.mipav.view.dialogs: Simple dialog for CT window presets.
JDialogCTPreset(Frame, ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCTPreset: Creates new dialog and sets up GUI components.
JDialogCumulativeHistogram - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogCumulativeHistogram(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: Constructor.
JDialogCyclicPermutation - Class in gov.nih.mipav.view.dialogs: Creates the dialog to cyclically permute pixels around the image.
JDialogCyclicPermutation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogCyclicPermutation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Constructor that makes dialog and displays it.
JDialogDataProvenance - Class in gov.nih.mipav.view.dialogs: Simple dialog used to show the image or system data provenance (by passing in a provenanceholder Displays data in table format, and the currently selected item will show up in the JTextArea (not editable, but selectable)
JDialogDataProvenance(Frame, String, String, ProvenanceHolder, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Default constructor for displaying data provenance (image or system)
JDialogDataProvenance.SelectionListener - Class in gov.nih.mipav.view.dialogs: Listens to selection changes in the data provenance JTable and updates the textarea with the current selection
JDialogDBSCANClusteringSegment - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDBSCANClusteringSegment() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogDBSCANClusteringSegment(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Creates a new JDialogDBSCANClusteringSegment object.
JDialogDeconvolution - Class in gov.nih.mipav.view.dialogs
JDialogDeconvolution() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Empty constructor needed for dynamic instantiation.
JDialogDeconvolution(Frame, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Construct the deconvolution blur dialog.
JDialogDeleteObjects - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDeleteObjects() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogDeleteObjects(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Constructor.
JDialogDemonsLite - Class in gov.nih.mipav.view.dialogs: Dialog box for Demons
JDialogDemonsLite() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Empty constructor needed for dynamic instantiation.
JDialogDemonsLite(ViewUserInterface, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Used primarily for the script to store variables and run the algorithm.
JDialogDemonsLite(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Creates dialog for plugin.
JDialogDEMRI3 - Class in gov.nih.mipav.view.dialogs: Dialog to get user input for 3 parameter dynamic (contrast) enhanced MRI model or DEMRI model
JDialogDEMRI3(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Creates a new JDialogDEMRI3 object.
JDialogDEMRI3(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Creates new dialog.
JDialogDicom2XMLSelection - Class in gov.nih.mipav.view.dialogs: Dialog to select DICOM files to convert to MIPAV XML or Minc 2.0 HDF format.
JDialogDicom2XMLSelection(FileInfoDicom, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates a new instance of JDialogDicom2XMLSelection.
JDialogDicom2XMLSelection.DicomTagIdentifier - Class in gov.nih.mipav.view.dialogs: DicomTagIdentifiers allow collecting both the FileDicomTag with the associated FileDicomKey (the Group and element numbers, properly formatted) of the Dicom Tag in one place, and to ensure that they only display the key and the name string of the Tag in toString().
JDialogDicom2XMLSelection.MyCellRenderer - Class in gov.nih.mipav.view.dialogs: This inner class is the font style renderer for the dicom tags The left panel will display all possible DICOM tags...however, if the image has that particular tag, it will be bold font
JDialogDICOMDeleteTagEditor - Class in gov.nih.mipav.view.dialogs: dialog for deleting DICOM tag information currently allows a limited number of special tags (procssing of which must be performed by the DICOM tag itself), but allows editing seperate multiplicity values.
JDialogDICOMDeleteTagEditor(Dialog, String, FileDicomTagTable, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: builds a dialog box with as many input panels as is needed to allow changing each value (when there are more than one values (vm > 1). as in "v1\v2\v3") independantly of any other value in the tag.
JDialogDicomDir - Class in gov.nih.mipav.view.dialogs: Simple dialog used to show the contents of a selected DICOMDIR file.
JDialogDicomDir(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomDir: Default constructor for DICOMDIR
JDialogDicomDir(Frame, File, FileDicom) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomDir
JDialogDICOMNewTagEditor - Class in gov.nih.mipav.view.dialogs: dialog for adding new DICOM tag information currently allows a limited number of special tags (procssing of which must be performed by the DICOM tag itself), but allows editing seperate multiplicity values.
JDialogDICOMNewTagEditor(Dialog, FileDicomTagTable, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: builds a dialog box with as many input panels as is needed to allow changing each value (when there are more than one values (vm > 1). as in "v1\v2\v3") independantly of any other value in the tag.
JDialogDICOMTagEditor - Class in gov.nih.mipav.view.dialogs: dialog for editing DICOM tag information currently allows a limited number of special tags (procssing of which must be performed by the DICOM tag itself), but allows editing seperate multiplicity values.
JDialogDICOMTagEditor(Dialog, String, FileDicomTagTable, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: builds a dialog box with as many input panels as is needed to allow changing each value (when there are more than one values (vm > 1). as in "v1\v2\v3") independantly of any other value in the tag.
JDialogDicomTagMultiEditor - Class in gov.nih.mipav.view.dialogs
JDialogDicomTagMultiEditor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor: Blank constructor needed for scripting
JDialogDicomTagMultiEditor(Hashtable<FileDicomKey, FileDicomTag>, JDialogBase, boolean, File[], FileInfoDicom) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
JDialogDicomTagSelector - Class in gov.nih.mipav.view.dialogs: This class allows for DICOM tags to be selected.
JDialogDicomTagSelector() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Blank constructor needed for scripting
JDialogDicomTagSelector(JDialogBase, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
JDialogDicomTagSelector.DicomTableModel - Class in gov.nih.mipav.view.dialogs
JDialogDicomTagSelector.NumberComparator - Class in gov.nih.mipav.view.dialogs
JDialogDicomTagSelector.TagInputListener - Class in gov.nih.mipav.view.dialogs
JDialogDICOMtoAVI - Class in gov.nih.mipav.view.dialogs: Title: JDialogDICOMtoAVI
JDialogDICOMtoAVI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Constructor for running the DICOM to AVI algorithm.
JDialogDilate - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDilate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDilate: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogDilate(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDilate: Creates new dialog.
JDialogDirectResample - Class in gov.nih.mipav.view.dialogs: Dialog to ask user to resample the images or not.
JDialogDirectResample() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDirectResample: Empty Contructor for script running.
JDialogDirectResample(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDirectResample: Creates the dialog, using the input parameters to place it on the screen.
JDialogDiscreteCosineTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDiscreteCosineTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Empty constructor needed for dynamic instantiation.
JDialogDiscreteCosineTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Construct the Discrete Cosine Transform dialog.
JDialogDiscreteSineTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDiscreteSineTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Empty constructor needed for dynamic instantiation.
JDialogDiscreteSineTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Construct the Discrete Sine Transform dialog.
JDialogDistanceMap - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogDistanceMap() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogDistanceMap(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Creates new dialog to get input for running the algorithm.
JDialogDoublyConnectedSC - Class in gov.nih.mipav.view.dialogs: Dialog to get Schwarz-Christoffel mapping of region between 2 polygons to an annulus
JDialogDoublyConnectedSC(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Creates a new JDialogFRAP object.
JDialogDoublyConnectedSC(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Creates new dialog.
JDialogDSC_MRI_toolbox - Class in gov.nih.mipav.view.dialogs
JDialogDSC_MRI_toolbox() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Empty constructor needed for dynamic instantiation.
JDialogDSC_MRI_toolbox(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Construct the bilateral filter dialog.
JDialogDTICreateListFile - Class in gov.nih.mipav.view.dialogs
JDialogDTICreateListFile() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
JDialogDTICreateListFileRegOAR35DOptions - Class in gov.nih.mipav.view.dialogs
JDialogDTICreateListFileRegOAR35DOptions(boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Creates new dialog for user to choose variables for internal registration.
JDialogDTIEstimateTensor - Class in gov.nih.mipav.view.dialogs
JDialogDTIEstimateTensor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: constructor
JDialogDTIInput - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Dialog for specifying Diffusion Tensor Images.
JDialogDTIInput(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Create a new JDialogDTIInput of one of the four types:
JDialogDualContourSearch - Class in gov.nih.mipav.view.dialogs: Dialog to get user search for best boundary between 2 contours
JDialogDualContourSearch(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Creates a new JDialogDualContourSearch object.
JDialogDualContourSearch(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Creates new dialog.
JDialogDualTriImageCrop - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogDualTriImageCrop() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDualTriImageCrop
JDialogDualTriImagePaintGrow - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogDualTriImagePaintGrow() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDualTriImagePaintGrow
JDialogDualTriImageTransformation - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogDualTriImageTransformation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDualTriImageTransformation
JDialogEdgeDetection3D - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogEdgeDetection3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEdgeDetection3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Creates new dialog for entering parameters for Sonka-Brejl 3D edge detection.
JDialogEdgeLaplacian - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogEdgeLaplacian() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEdgeLaplacian(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Creates new dialog and displays it.
JDialogEdgeNMSuppression - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogEdgeNMSuppression() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEdgeNMSuppression(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Creates new dialog and displays it.
JDialogEdgePreservingSmoothing - Class in gov.nih.mipav.view.dialogs
JDialogEdgePreservingSmoothing() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Empty constructor needed for dynamic instantiation.
JDialogEdgePreservingSmoothing(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Construct the Edge Preserving Smoothing dialog.
JDialogEditCircleDiameter - Class in gov.nih.mipav.view.dialogs
JDialogEditCircleDiameter(Component, String, String, String, float[], VOIBase, VOIManager) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
JDialogEditor - Class in gov.nih.mipav.view.dialogs: Simple editor using JPanelEdits.
JDialogEditor(Dialog, Object, Object[], int[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEditor: sadly, the dialog doesn't know how to figure out what editor panels to apply to the different inputs, so old values must be sent as an array of objects.
JDialogEditSquareLength - Class in gov.nih.mipav.view.dialogs
JDialogEditSquareLength(Component, String, String, String, float[], VOIBase, VOIManager) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
JDialogEditUserDefinedFileTypes - Class in gov.nih.mipav.view.dialogs: This class is the dialog that allows the user to edit the user defined file extensions filter
JDialogEditUserDefinedFileTypes() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: Constructor.
JDialogEfficientWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogEfficientWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Empty constructor needed for dynamic instantiation.
JDialogEfficientWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Creates a new JDialogEfficientWatershed object.
JDialogEllipseGeneration - Class in gov.nih.mipav.view.dialogs: Dialog to create an image with randomly spaced, aggregated, regular or uniform, or constrained ellipses of the same size
JDialogEllipseGeneration(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: Creates new dialog.
JDialogEllipseToCircle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of ellipse which will be conformally mapped to a circle.
JDialogEllipseToCircle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Creates a new JDialogEllipseToCircle object.
JDialogEllipseToCircle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Creates new dialog.
JDialogEllipseToRectangle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of ellipse which will be conformally mapped to a rectangle.
JDialogEllipseToRectangle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Creates a new JDialogEllipseToRectangle object.
JDialogEllipseToRectangle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Creates new dialog.
JDialogEmbeddedConfidenceEdgeDetection - Class in gov.nih.mipav.view.dialogs
JDialogEmbeddedConfidenceEdgeDetection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEmbeddedConfidenceEdgeDetection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: Creates new dialog for entering parameters for embedded confidence edge detection.
JDialogEnhancedDicomChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to write an enhanced dicom MR, CT, XA, or Other file.
JDialogEnhancedDicomChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Creates new dialog.
JDialogEntropicEdgeDetection - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogEntropicEdgeDetection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEntropicEdgeDetection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Creates new dialog for entering parameters for entropic edge detection.
JDialogEntropyMinimization - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogEntropyMinimization() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEntropyMinimization(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Creates new dialog for entering parameters for entropy minimization.
JDialogErode - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogErode() - Constructor for class gov.nih.mipav.view.dialogs.JDialogErode: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogErode(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogErode: Creates new erode dialog.
JDialogEvaluateMaskSegmentation - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmEvaluateMaskSegmentation.
JDialogEvaluateMaskSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEvaluateMaskSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Creates new evaluate segmentation dialog to get test image name.
JDialogEvaluateSegmentation - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmEvaluateSegmentation.
JDialogEvaluateSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogEvaluateSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Creates new evaluate segmentation dialog to get test image name.
JDialogEvolveBoundaryManual - Class in gov.nih.mipav.view.dialogs
JDialogEvolveBoundaryManual(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Creates new dialog for entering parameters for algorithm.
JDialogEvolveBoundaryManual(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Creates new dialog for entering parameters for algorithm.
JDialogExtractBrain - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogExtractBrain() - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogExtractBrain(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Sets the appropriate variables.
JDialogExtractObject - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogExtractObject(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractObject: Sets the appropriate variables.
JDialogExtractSlices - Class in gov.nih.mipav.view.dialogs: Dialog to call the extractSlices.
JDialogExtractSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogExtractSlices(Frame, ModelImage, Vector<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Constructor.
JDialogExtractSlicesVolumes - Class in gov.nih.mipav.view.dialogs: Creates the dialog to remove separate slices in an image.
JDialogExtractSlicesVolumes() - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogExtractSlicesVolumes(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Creates new dialog for removing slices.
JDialogExtractSurfaceCubes - Class in gov.nih.mipav.view.dialogs: Extracts a surface using Cube Extraction.
JDialogExtractSurfaceCubes() - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Empty constructor needed for dynamic instantiation (during script execution).
JDialogExtractSurfaceCubes(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Create a dialog to set variables to extract surface.
JDialogExtractSurfaceCubes(JFrame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Creates a subset of the extract surface dialog.
JDialogFaceAnonymize - Class in gov.nih.mipav.view.dialogs
JDialogFaceAnonymize() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFaceAnonymize(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Creates the face anonymizer dialog.
JDialogFaceAnonymizerBET - Class in gov.nih.mipav.view.dialogs: Dialog used to input parameters and start the BET-based face anonymizer.
JDialogFaceAnonymizerBET() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFaceAnonymizerBET(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Creates the face anonymizer dialog.
JDialogFacetModel - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFacetModel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFacetModel: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFacetModel(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFacetModel: Used primarily for the script to store variables and run the algorithm.
JDialogFacetModel(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFacetModel: Creates a new JDialogFacetModel object.
JDialogFastMarching - Class in gov.nih.mipav.view.dialogs
JDialogFastMarching() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFastMarching: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFastMarching(Frame, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFastMarching: Creates new dialog for finding the level set.
JDialogFemurTraceSectionsNetherland - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class is the driver for the AAM classification.
JDialogFemurTraceSectionsNetherland(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Constructor. the parent frame
JDialogFemurTraceSectionsNetherland.Line - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsNetherland.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsNetherland.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogFemurTraceSectionsNetherland.Range - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Ending slice start and end indexes.
JDialogFemurTraceSectionsNetherland.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: shape descriptor class.
JDialogFemurTraceSectionsNetherland.TracingPoint - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsNIH - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class is the driver for the AAM classification.
JDialogFemurTraceSectionsNIH(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Constructor. the parent frame
JDialogFemurTraceSectionsNIH.Line - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsNIH.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsNIH.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogFemurTraceSectionsNIH.Range - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Ending slice start and end indexes.
JDialogFemurTraceSectionsNIH.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: shape descriptor class.
JDialogFemurTraceSectionsNIH.TracingPoint - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsSeparateNetherland - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class is the driver for the AAM classification.
JDialogFemurTraceSectionsSeparateNetherland(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Constructor. the parent frame
JDialogFemurTraceSectionsSeparateNetherland.Line - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsSeparateNetherland.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogFemurTraceSectionsSeparateNetherland.Range - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Ending slice start and end indexes.
JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: shape descriptor class.
JDialogFemurTraceSectionsSeparateNetherland.TracingPoint - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogFFT - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFFT() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFFT: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFFT(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFFT: Creates new FFT dialog.
JDialogFileInfo - Class in gov.nih.mipav.view.dialogs: This class shows the dialog which conatains the file-info header information as used in the FileInfoBase class.
JDialogFileInfo(Frame, String, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfo: This method displays all the valid variables, that is, the ones that are no longer equal to their default values.
JDialogFileInfoDICOM - Class in gov.nih.mipav.view.dialogs: This class shows the dialog which contains the DICOM header information as contained in the FileInfoDicom class.
JDialogFileInfoDICOM() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Default Constructor
JDialogFileInfoDICOM(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Constructs new dialog with given title and parent, non modal.
JDialogFileInfoDICOM.CheckBoxEditor - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.CheckBoxRenderer - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.CompareGroup - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.HeaderListener - Class in gov.nih.mipav.view.dialogs: Simple listener for the table header.
JDialogFileInfoDICOM.RowData - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.TableListener - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.TagCodeRenderer - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoDICOM.TagReferenceRenderer - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoMinc - Class in gov.nih.mipav.view.dialogs: Text dialog filled with the a minc image's file info.
JDialogFileInfoMinc(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Constructs resizable dialog with text area in the middle.
JDialogFileInfoMincHDF - Class in gov.nih.mipav.view.dialogs
JDialogFileInfoMincHDF() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Default Constructor
JDialogFileInfoMincHDF(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Constructs new dialog with given title and parent, non modal.
JDialogFileInfoXML - Class in gov.nih.mipav.view.dialogs: This class shows the dialog which conatains the file-info header information as used in the FileInfoBase class.
JDialogFileInfoXML(Frame, String, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: Creates a new JDialogFileInfoXML object.
JDialogFileInfoXML.PSetDisplay - Class in gov.nih.mipav.view.dialogs: Class to hold one table, model, & label per parameter set There can be infinite parameter sets, and the sets are deletable, so each set display must be stored in a hashtable for easy access/deletion.
JDialogFileInfoXML.PSetDisplay.HeaderListener - Class in gov.nih.mipav.view.dialogs: Simple listener for the table header.
JDialogFileInfoXML.SurfaceDisplay - Class in gov.nih.mipav.view.dialogs: Class to hold one table, model, & label per parameter set There can be infinite parameter sets, and the sets are deletable, so each set display must be stored in a hashtable for easy access/deletion.
JDialogFileInfoXML.SurfaceDisplay.HeaderListener - Class in gov.nih.mipav.view.dialogs: Simple listener for the table header.
JDialogFillObjects - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogFillObjects() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFillObjects: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFillObjects(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFillObjects: Creates new dialog.
JDialogFilterChoice - Class in gov.nih.mipav.view.dialogs: Simple dialog to choose the filter for the view image directory.
JDialogFilterChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Initializes the dialog.
JDialogFindEdges - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFindEdges() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFindEdges: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFindEdges(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFindEdges: Used primarily for the script to store variables and run the algorithm.
JDialogFindEdges(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFindEdges: Creates new dialog to find edges.
JDialogFIREEdgeExtraction - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogFIREEdgeExtraction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFIREEdgeExtraction(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Creates new dialog for entering parameters for FIRE Edge Extraction.
JDialogFlip - Class in gov.nih.mipav.view.dialogs: Dialog to call the image flip.
JDialogFlip() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFlip: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFlip(Frame, ModelImage, int, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFlip: Sets the appropriate variables.
JDialogFrameLinker - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFrameLinker(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Used primarily for the script to store variables and run the algorithm.
JDialogFrameLinker(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Creates new image calculator dialog and displays.
JDialogFRAP - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Fluorescence recovery after photobleaching Algorithms are executed in their own thread.
JDialogFRAP(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRAP: Creates a new JDialogFRAP object.
JDialogFRAP(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRAP: Creates new dialog.
JDialogFrequencyFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFrequencyFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFrequencyFilter(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Used primarily for the script to store variables and run the algorithm.
JDialogFrequencyFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Creates a new JDialogFrequencyFilter object.
JDialogFRET - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Fluorescence resonance energy transfer Algorithms are executed in their own thread.
JDialogFRET(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRET: Creates a new JDialogFRET object.
JDialogFRET(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRET: Creates new dialog.
JDialogFRETBleedThrough - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFRETBleedThrough() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFRETBleedThrough(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Used primarily for the script to store variables and run the algorithm.
JDialogFRETBleedThrough(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Creates a new JDialogFRETBleedThrough object.
JDialogFRETEfficiency - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFRETEfficiency() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFRETEfficiency(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Used primarily for the script to store variables and run the algorithm.
JDialogFRETEfficiency(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Creates a new JDialogFRETEfficiency object.
JDialogFuzzMinDeAndChatterji - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFuzzMinDeAndChatterji() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFuzzMinDeAndChatterji(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Creates a new JDialogFuzzyMinimization object.
JDialogFuzzyCMeans - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFuzzyCMeans() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFuzzyCMeans(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Creates a new JDialogFuzzyCMeans object.
JDialogFuzzyConnectednessSegmentation - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogFuzzyConnectednessSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFuzzyConnectednessSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Creates new dialog for entering parameters for Power watershed.
JDialogFuzzyConnectednessSegmentation.labelIndexComparator - Class in gov.nih.mipav.view.dialogs
JDialogFuzzyConnectednessSegmentation.labelIndexItem - Class in gov.nih.mipav.view.dialogs
JDialogFuzzyMinimization - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogFuzzyMinimization() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFuzzyMinimization(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Creates a new JDialogFuzzyMinimization object.
JDialogGaborFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogGaborFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGaborFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Creates a new JDialogGaborFilter object.
JDialogGaussianBlur - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogGaussianBlur() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Empty constructor needed for dynamic instantiation.
JDialogGaussianBlur(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Construct the gaussian blur dialog.
JDialogGenerateEndingSlices - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogGenerateEndingSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
JDialogGenerateGrid - Class in gov.nih.mipav.view.dialogs
JDialogGenerateGrid() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGenerateGrid: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGenerateGrid(Frame, ViewJComponentEditImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
JDialogGenerateIsolines - Class in gov.nih.mipav.view.dialogs
JDialogGenerateIsolines() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGenerateIsolines(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
JDialogGradientInverseWeightedSmoothing - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogGradientInverseWeightedSmoothing() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGradientInverseWeightedSmoothing(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Creates new dialog for entering parameters for gradient inverse weighted smoothing.
JDialogGradientMagnitude - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogGradientMagnitude() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGradientMagnitude(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Construct the gradient magnitude dialog.
JDialogGraphBasedSegmentation - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogGraphBasedSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGraphBasedSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Creates new dialog for entering parameters for graph based segmentation on 2D color images.
JDialogGridOptions - Class in gov.nih.mipav.view.dialogs: Sets options for overlaying a grid on the image.
JDialogGridOptions(Frame, ViewJComponentEditImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGridOptions: Creates new dialog for entering parameters for entropy minimization.
JDialogGridOptions.CancelListener - Class in gov.nih.mipav.view.dialogs: Does nothing.
JDialogGridOptions.OkColorListener - Class in gov.nih.mipav.view.dialogs: Pick up the selected color and call method to change the VOI color.
JDialogGridSize(JFrame) - Constructor for class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
JDialogGUIDClient - Class in gov.nih.mipav.view.dialogs: Title:
JDialogGUIDClient(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGUIDClient
JDialogGuidedFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogGuidedFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogGuidedFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Creates a new JDialogGuidedFilter object.
JDialogGVF - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogGVF(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogGVF: Creates new dialog for finding the GVF.
JDialogHaarTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHaarTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Empty constructor needed for dynamic instantiation.
JDialogHaarTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Construct the Haar Transform dialog.
JDialogHaralickTexture - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHaralickTexture() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Empty constructor needed for dynamic instantiation.
JDialogHaralickTexture(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Creates a new JDialogHaralickTexture object.
JDialogHarrisCornerDetector - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogHarrisCornerDetector() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHarrisCornerDetector(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Creates new dialog for entering parameters for Harris corner detection.
JDialogHarrisLaplace - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogHarrisLaplace() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHarrisLaplace(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Creates new dialog for entering parameters for BRISK.
JDialogHartleyTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHartleyTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Empty constructor needed for dynamic instantiation.
JDialogHartleyTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Construct the Hartley Transform dialog.
JDialogHessian - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHessian(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHessian: Creates a new JDialogHessian object.
JDialogHillClimbingWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHillClimbingWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Empty constructor needed for dynamic instantiation.
JDialogHillClimbingWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Creates a new JDialogHillClimbingWatershed object.
JDialogHistogram2Dim - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Create 2D histogram of images with equal dimensions or 2D histograms with 2 colors inside a RGB image.
JDialogHistogram2Dim() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHistogram2Dim(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Creates new dialog.
JDialogHistogramLUT - Class in gov.nih.mipav.view.dialogs: Deprecated.
JDialogHistogramLUT(Frame, ModelImage, ModelImage, ModelLUT, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.
JDialogHistogramLUT(Frame, ModelImage, ModelImage, ModelRGB, ModelRGB) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.
JDialogHistogramLUT(Frame, ViewJComponentRegistration, ModelImage, ModelImage, ModelLUT, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.
JDialogHistogramLUT(Frame, ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.
JDialogHistogramMatch - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Selected image is match image, the image that gets transformed until it is histogram matched to the base image.
JDialogHistogramMatch() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHistogramMatch(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Creates new dialog.
JDialogHistogramSliceMatch - Class in gov.nih.mipav.view.dialogs: Dialog to get user input reference slice.
JDialogHistogramSliceMatch() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHistogramSliceMatch(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Creates new dialog.
JDialogHistogramSummary - Class in gov.nih.mipav.view.dialogs: Dialog to choose images, then call the RGBConcat algorithm.
JDialogHistogramSummary() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHistogramSummary(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Creates new dialog to enter parameters for RGBConcat algorithm.
JDialogHMRF_EM - Class in gov.nih.mipav.view.dialogs
JDialogHMRF_EM() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: Empty constructor needed for dynamic instantiation.
JDialogHMRF_EM(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: Creates a new JDialogHMRF_EM object.
JDialogHomomorphicFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHomomorphicFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogHomomorphicFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Creates a new JDialogHomomorphicFilter object.
JDialogHoughCardioid - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with x0, y0, rad output for cardioid detection in binary image, where sqrt((x - x0)**2 + (y - y0)**2) = a*(1 - cos(theta + theta0)) sqrt((x - x0)**2 + (y - y0)**2) = a*(1 + cos(theta)) for cusp on left sqrt((x - x0)**2 + (y - y0)**2) = a*(1 - cos(theta)) for cusp on right sqrt((x - x0)**2 + (y - y0)**2) = a*(1 + sin(theta)) for cusp on top sqrt((x - x0)**2 + (y - y0)**2) = a*(1 - sin(theta)) for cusp on bottom
JDialogHoughCardioid(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Creates a new JDialogHoughCardioid object.
JDialogHoughCardioid(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Creates new dialog.
JDialogHoughCardioidChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which cardioids to draw.
JDialogHoughCardioidChoice(Frame, double[], int, double[], int, double[], double, double[], int[], boolean[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Creates a new JDialogHoughCardioidChoice object.
JDialogHoughCircle - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with x0, y0, rad output for circle detection in binary image, where (x - x0)**2 + (y - y0)**2 = rad**2
JDialogHoughCircle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Creates a new JDialogHoughCircle object.
JDialogHoughCircle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Creates new dialog.
JDialogHoughCircleChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which circles to draw.
JDialogHoughCircleChoice(Frame, double[], int, double[], int, double[], double, int[], boolean[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Creates a new JDialogHoughCircleChoice object.
JDialogHoughEllipse - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with p, q, r1, r2, and theta output for ellipse detection in binary image, where p is the x coordinate of the ellipse center, q is the y coordinate of the ellipse center, r1 is the semimajor axis (or major radius), r2 is the semiminor axis (or minor radius), and theta is the angle of the major axis with the x axis.
JDialogHoughEllipse(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Creates a new JDialogHoughEllipse object.
JDialogHoughEllipse(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Creates new dialog.
JDialogHoughEllipseChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which ellipses to draw.
JDialogHoughEllipseChoice(Frame, float[], int, float[], int, float[], double, double, float[], double, double, float[], short[], boolean[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Creates a new JDialogHoughEllipseChoice object.
JDialogHoughHyperbola - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with p, q, r1, r2, and theta output for hyperbola detection in binary image, where p is the x coordinate of the hyperbola center, q is the y coordinate of the hyperbola center, r1 is the 1/2 the transverse axis, r2 is 1/2 the conjugate axis, and theta is the angle of the transverse axis with the x axis.
JDialogHoughHyperbola(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Creates a new JDialogHoughHyperbola object.
JDialogHoughHyperbola(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Creates new dialog.
JDialogHoughHyperbolaChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which hyperbolas to draw.
JDialogHoughHyperbolaChoice(Frame, float[], int, float[], int, float[], double, double, float[], double, double, float[], short[], boolean[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Creates a new JDialogHoughHyperbolaChoice object.
JDialogHoughLine - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with rho, theta output for line detection of binary image
JDialogHoughLine(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughLine: Creates a new JDialogHoughLine object.
JDialogHoughLine(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughLine: Creates new dialog.
JDialogHoughLineChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which lines to fill gaps on and the maximum distance of the gap to be filled for each line..
JDialogHoughLineChoice(Frame, int[], int, int[], int, int[], boolean[], float[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Creates a new JDialogHoughLineChoice object.
JDialogHoughParabola - Class in gov.nih.mipav.view.dialogs: Dialog to create Hough transform with xv, yv, phi, p output for parabola detection in binary image, where [(y - yv)*cos(phi) - (x - xv)*sin(phi)]**2 = 4*p*[(y - vy)*sin(phi) + (x - vx)*cos(phi)] where vx, vy are the coordinates of the parabola vertex p is the distance between the vertex and focus of the parabola
JDialogHoughParabola(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Creates a new JDialogHoughParabola object.
JDialogHoughParabola(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Creates new dialog.
JDialogHoughParabolaChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose which parabolas to draw.
JDialogHoughParabolaChoice(Frame, float[], int, float[], int, double[], int, float[], float, float, int[], boolean[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Creates a new JDialogHoughParabolaChoice object.
JDialogHurstIndex - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogHurstIndex() - Constructor for class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Empty constructor needed for dynamic instantiation.
JDialogHurstIndex(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Creates a new JDialogHurstIndex object.
JDialogHyperGraph - Class in gov.nih.mipav.view.graphVisualization: Frame and user interface for displaying a HyperGraph in MIPAV.
JDialogHyperGraph() - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Default Constructor.
JDialogHyperGraph(ViewJFrameImage) - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Creates a HyperGraph using the ViewJFrameImage active image and menu bars as the root and tree of the graph.
JDialogHyperGraph(String, String) - Constructor for class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Creates a HyperGraph visualization from the graph located in the given directory and file.
JDialogIAGCWD - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogIAGCWD() - Constructor for class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogIAGCWD(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Creates new dialog for entering parameters for IAGCWD contrast enhancement.
JDialogIDObjects - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogIDObjects() - Constructor for class gov.nih.mipav.view.dialogs.JDialogIDObjects: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogIDObjects(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIDObjects: Creates new dialog.
JDialogIHN3Correction - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogIHN3Correction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogIHN3Correction(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Create new dialog to set parameters for IHN3 algorithm.
JDialogImageCalculator - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogImageCalculator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogImageCalculator(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Creates new image calculator dialog and displays.
JDialogImageInfo - Class in gov.nih.mipav.view.dialogs: The image attribute input dialog, which consists of six tabbled panes allowing the user to edit image name, resolutions, orientations, dataset origin, history, and transformation matrix.
JDialogImageInfo(Frame, ModelImage, int, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the image attribute input dialog, with three tabbled panes allowing the user to edit image name, orientation, resolutions, and transformation matrix.
JDialogImageMath - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogImageMath() - Constructor for class gov.nih.mipav.view.dialogs.JDialogImageMath: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogImageMath(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogImageMath: Creates new dialog.
JDialogImRegPOC - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogImRegPOC() - Constructor for class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogImRegPOC(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Creates a new JDialogImRegPOC object.
JDialogIncrement(Frame, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Creates new dialog for incrementing either the pixel or the degree.
JDialogIncrement(Frame, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Creates new dialog for incrementing either the pixel or the degree.
JDialogIndependentComponents - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogIndependentComponents() - Constructor for class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogIndependentComponents(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Creates a new JDialogIndependentComponents object.
JDialogInitialCentroids - Class in gov.nih.mipav.view.dialogs: Creates the dialog to input inital centroid values for each class for AlgorithmFuzzyCMeans.
JDialogInitialCentroids(Frame, int, float, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: Creates the dialog.
JDialogInitialCentroids(Frame, int, float, float, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInitialCentroids
JDialogInsertMissingSlices - Class in gov.nih.mipav.view.dialogs: Creates the dialog to insert missing slices into an image.
JDialogInsertMissingSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogInsertMissingSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Creates new dialog for inserting a slice.
JDialogInsertSlice - Class in gov.nih.mipav.view.dialogs: Creates the dialog to insert slice into an image.
JDialogInsertSlice() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogInsertSlice(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Creates new dialog for inserting a slice.
JDialogInsertVolume - Class in gov.nih.mipav.view.dialogs
JDialogInsertVolume() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogInsertVolume(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Creates new dialog for inserting a volume.
JDialogInstallPlugin - Class in gov.nih.mipav.view.dialogs: Simple dialog to install a plugin.
JDialogInstallPlugin(JFrame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Creates new dialog.
JDialogInstallPlugin.ClassSelectorPanel - Class in gov.nih.mipav.view.dialogs
JDialogInstallPlugin.FileCellRenderer - Class in gov.nih.mipav.view.dialogs
JDialogInstallPlugin.JFileTreeNode - Class in gov.nih.mipav.view.dialogs: A node in the file tree.
JDialogInstallPlugin.JFileTreePanel - Class in gov.nih.mipav.view.dialogs: A generic file tree.
JDialogInstallPlugin.JFileTreePanel.JFileTreeCellRenderer - Class in gov.nih.mipav.view.dialogs: Renderer for the file tree.
JDialogIntensityHistogram - Class in gov.nih.mipav.view.dialogs: Title:
JDialogIntensityHistogram(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: Creates a new JDialogIntensityHistogram object.
JDialogIntensityPaint - Class in gov.nih.mipav.view.dialogs: Simple dialog to change desired intensity level for painting.
JDialogIntensityPaint(Frame, String, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Creates new dialog for getting the intensity of the paint.
JDialogIntensityPaint(Frame, String, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Creates new dialog for getting the intensity of the paint.
JDialogIntensityThreshold - Class in gov.nih.mipav.view.dialogs: Title:
JDialogIntensityThreshold(JFrame, ViewJComponentEditImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: Creates a new JDialogIntensityThreshold object.
JDialogIntensityThreshold(JFrame, VOIHandlerInterface, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: Creates a new JDialogIntensityThreshold object.
JDialogInvert - Class in gov.nih.mipav.view.dialogs: Simple dialog to invert an image - substitute light intensities for dark intensities and dark intensities for light intensities.
JDialogInvert() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInvert: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogInvert(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInvert: Creates new dialog for converting type of image.
JDialogIsophoteCurvature - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogIsophoteCurvature() - Constructor for class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogIsophoteCurvature(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Creates a new JDialogIsophoteCurvature object.
JDialogKernelRegression - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogKernelRegression() - Constructor for class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogKernelRegression(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Creates a new JDialogKernelRegression object.
JDialogKMeans - Class in gov.nih.mipav.view.dialogs
JDialogKMeans() - Constructor for class gov.nih.mipav.view.dialogs.JDialogKMeans
JDialogKnees_3DReconstrucion - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: For knees project, reconstruct the 3D surface from VOIs.
JDialogKnees_3DReconstrucion(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Constructor.
JDialogKnees_90_data_train_extraction - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class converts the original knees MRI images into isotropic images. 1) Convert the VOIs into binary image masks. 2) Convert the original images into isotropic images 3) Convert the isotropic images from sagittal to axial; sagittal to coronal. 4) Along each orietation, generate the CED image in addition to MRI. 5) Save all the images (isotropic axial, sagittal, coronal images with corresponding binary masks).
JDialogKnees_90_data_train_extraction(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Constructor.
JDialogKnees2DSlicesAtlasPngConverter - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class convert the 3D images to 2D slices based png files for single MRI GRE image alone.
JDialogKnees2DSlicesAtlasPngConverter(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Constructor.
JDialogKneesLearnFromFailure64TestCase - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Test case: generate the femur VOI contours from Alexnet generated deep learning energy maps. -------------------------------------------------------- No longer need it.
JDialogKneesLearnFromFailure64TestCase(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Constructor.
JDialogKneesLearnFromFailure64TestCase.ImageAttributes - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogKneesMapFromMRIandCED - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class generates the knees VOI contours from the deep learning HED MRI and CED energy maps.
JDialogKneesMapFromMRIandCED(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Constructor.
JDialogLaplacian - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLaplacian() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLaplacian: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLaplacian(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLaplacian: Creates a new JDialogLaplacian object.
JDialogLawsTexture - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLawsTexture() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Empty constructor needed for dynamic instantiation.
JDialogLawsTexture(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Creates a new JDialogLawsTexture object.
JDialogLearnFromFailure64Knees - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Generate the 2D 32x32 patches for both training and testing cased. 1) AAM generates the initial contours. 2) Alone each normal line of the contour point, extract 32x32 patches for both training and testing cases -------------------------------------------------------- No longer need it.
JDialogLearnFromFailure64Knees(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Constructor.
JDialogLevelSet - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLevelSet(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLevelSet: Creates new dialog for finding the level set.
JDialogLevelSetDiffusion - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLevelSetDiffusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Creates new dialog for finding the level set.
JDialogLightBox - Class in gov.nih.mipav.view.dialogs: This class builds the control dialog used in ViewJFrameLightbox class.
JDialogLightBox(ViewJFrameLightBox) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox: constructs new control dialog of the Lightbox View.
JDialogLightBox.CancelListener - Class in gov.nih.mipav.view.dialogs: does nothing at the moment.
JDialogLightBox.OkBgListener - Class in gov.nih.mipav.view.dialogs: pick up the selected color and call method to change the grid color.
JDialogLightBox.OkBorderListener - Class in gov.nih.mipav.view.dialogs: Pick up the selected color and change the image border color For use by the color chooser.
JDialogLightboxGen - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm...
JDialogLightboxGen() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLightboxGen(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Creates new match image dialog and displays.
JDialogListSaveSelection - Class in gov.nih.mipav.view.dialogs: A basic dialog to read and parse the two options files, display the options in the files, and allow file action between the two.
JDialogListSaveSelection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates a non-modal dialog, initializes the layout (@see initializeLayout) and registers the PropertyChangeListeners to connect the lists with the file structure.
JDialogListSaveSelection(boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates a dialog with the given modality, and will initialize the layout and register changes, but it will not populate the lists.
JDialogListSaveSelection.JPanelListSelection - Class in gov.nih.mipav.view.dialogs: A type of JPanelListController which spefically defines the left-direction buttons to be disabled and the delete button to be enabled.
JDialogListSaveSelection.TagComparator - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLivewire - Class in gov.nih.mipav.view.dialogs: Simple dialog to choose which cost function to use for the live wire.
JDialogLivewire(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLivewire: Creates dialog for choosing cost function for live wire.
JDialogLLE - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLLE() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLLE: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLLE(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLLE: Creates new dialog for entering parameters for locally linear embedding.
JDialogLoadImage - Class in gov.nih.mipav.view.dialogs: JDialogLoadImage allows the MIPAV user to import an image (namely, ImageA) from another image frame.
JDialogLoadImage() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage: Empty Constructor for script.
JDialogLoadImage(Frame, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage: Creates a new JDialogLoadImage object.
JDialogLoadImage.AlgorithmLoadB - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLoadImageForRegistration - Class in gov.nih.mipav.view.dialogs: JDialogLoadImage allows the MIPAV user to import an image (namely, ImageA) from another image frame.
JDialogLoadImageForRegistration(ViewJFrameImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: Creates a new JDialogLoadImageForRegistration object.
JDialogLoadLeica - Class in gov.nih.mipav.view.dialogs: Creates the dialog to remove separate slices in an image.
JDialogLoadLeica(Frame, File) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Creates a new JDialogLoadLeica object.
JDialogLoadLeica(File) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Creates a new JDialogLoadLeica object.
JDialogLoadLeica.LeicaFileComparator - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLoadLeica.LeicaSeries - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLoadProstateMask - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogLoadProstateMask(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
JDialogLocalNormalization - Class in gov.nih.mipav.view.dialogs: This is the dialog to permit user to perform Local Normalization.
JDialogLocalNormalization() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLocalNormalization(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Creates an modal extension of JDialogBase, using the title, "Local Normalization".
JDialogLocalVariance - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLocalVariance() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLocalVariance(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Creates a new JDialogLocalVariance object.
JDialogLogSlopeMapping - Class in gov.nih.mipav.view.dialogs
JDialogLogSlopeMapping() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
JDialogLowerCompletion - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogLowerCompletion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Empty constructor needed for dynamic instantiation.
JDialogLowerCompletion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Creates a new JDialogLowerCompletion object.
JDialogLuminanceAdaptation - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogLuminanceAdaptation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogLuminanceAdaptation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Creates new dialog for entering parameters for LuminanceAdaptation.
JDialogMagnificationControls - Class in gov.nih.mipav.view.dialogs: Simple dialog to change Magnification Box Settings.
JDialogMagnificationControls(Frame, ViewJComponentEditImage, float, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Creates new magnification controls dialog.
JDialogMarkovSegment - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMarkovSegment() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMarkovSegment(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Creates a new JDialogMarkovSegment object.
JDialogMarkovSmooth - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMarkovSmooth() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMarkovSmooth(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Creates a new JDialogMarkovSmooth object.
JDialogMask - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMask() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMask: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMask(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMask: Creates a new JDialogMask object.
JDialogMask(ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMask
JDialogMask(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMask: Creates a new JDialogMask object.
JDialogMask3D4D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMask3D4D(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Creates a new JDialogMask3D4D object.
JDialogMatchImages - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm...
JDialogMatchImages() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMatchImages: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMatchImages(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMatchImages: Creates new match image dialog and displays.
JDialogMaximumIntensityProjection - Class in gov.nih.mipav.view.dialogs: Dialog to call Maximum Intensity Projection.
JDialogMaximumIntensityProjection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMaximumIntensityProjection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Sets the appropriate variables.
JDialogMaximumLikelihoodIteratedBlindDeconvolution - Class in gov.nih.mipav.view.dialogs: Dialog that launches the Maximum likelihood iterated blind deconvolution algorithm.
JDialogMaximumLikelihoodIteratedBlindDeconvolution(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Creates a new JDialogMaximumLikelihoodIteratedBlindDeconvolution object.
JDialogMean - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMean() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMean: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMean(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMean: Creates a new JDialogMean object.
JDialogMeanShiftClustering - Class in gov.nih.mipav.view.dialogs
JDialogMeanShiftClustering() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
JDialogMeanShiftSegmentation - Class in gov.nih.mipav.view.dialogs
JDialogMeanShiftSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMeanShiftSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: Creates new dialog for entering parameters for mean shift segmentation.
JDialogMedian - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMedian() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMedian: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMedian(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMedian: Creates a new JDialogMedian object.
JDialogMemoryAllocation - Class in gov.nih.mipav.view.dialogs: Dialog to alter memory allocation of the runtime environment.
JDialogMemoryAllocation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: builds the dialog interface to get user to change the lax-file settings for the JVM to use on java start-up.
JDialogMemoryAllocation(ViewUserInterface, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: strictly reads the memory settings from the LAX-file.
JDialogMemoryAllocation.VMConfigType - Enum in gov.nih.mipav.view.dialogs
JDialogMetaImageChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose what type of MetaImage file to write.
JDialogMetaImageChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Creates new dialog.
JDialogMidsagittal - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the midsagittal alignment algorithm.
JDialogMidsagittal() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Empty constructor needed for dynamic instantiation.
JDialogMidsagittal(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Set up the dialog (nothing right now), and run the algorithm (since there really is no dialog).
JDialogMipavOptions - Class in gov.nih.mipav.view.dialogs: This dialog contains access to MIPAV preferences.
JDialogMipavOptions() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMipavOptions: creates a dialog, builds in the options: splash page option Swing file-dialog option Active image color high-light option Debugging options
JDialogMipavOptions.ComboBoxRenderer - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogMipavOptions.ComboBoxRenderer2 - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogMipavOptions.FontBoxRenderer - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogMode - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmMode.
JDialogMode() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMode: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMode(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMode: Creates a new JDialogMode object.
JDialogMorphologicalFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMorphologicalFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMorphologicalFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Creates a new JDialogMorphologicalFilter object.
JDialogMorphologicalGradient - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMorphologicalGradient() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMorphologicalGradient(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Creates new Morphological gradient dialog.
JDialogMorphologicalLaplacian - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMorphologicalLaplacian() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMorphologicalLaplacian(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Creates new Morphological laplacian dialog.
JDialogMorphologicalReconstruction - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMorphologicalReconstruction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMorphologicalReconstruction(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Constructor.
JDialogMosaicToSlices - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMosaicToSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMosaicToSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Creates new Mosaic To Slices dialog.
JDialogMotionDetection - Class in gov.nih.mipav.view.dialogs
JDialogMotionDetection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMotionDetection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMotionDetection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMotionDetection: Creates a new JDialogMotionDetection object.
JDialogMRIShadingCorrection - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMRIShadingCorrection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Empty constructor needed for dynamic instantiation.
JDialogMRIShadingCorrection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Creates a new JDialogMRIShadingCorrection object.
JDialogMSER - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogMSER() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMSER: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMSER(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMSER: Creates new dialog for entering parameters for BRISK.
JDialogMSFuzzyCMeans - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMSFuzzyCMeans() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMSFuzzyCMeans(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Creates a new JDialogMSFuzzyCMeans object.
JDialogMultiPaint - Class in gov.nih.mipav.view.dialogs: .
JDialogMultiPaint(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Used primarily for the script to store variables and run the algorithm.
JDialogMultiPaint(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Creates dialog for plugin.
JDialogMultiResolutionBilateralFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMultiResolutionBilateralFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMultiResolutionBilateralFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Creates a new JDialogMultiResolutionBilateralFilter object.
JDialogMultiResolutionGuidedFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogMultiResolutionGuidedFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMultiResolutionGuidedFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Creates a new JDialogMultiResolutionGuidedFilter object.
JDialogMultiScaleHornSchunk - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images optical flow estimation based on multi scale Horn-Schunk are executed in their own thread.
JDialogMultiScaleHornSchunk() - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMultiScaleHornSchunk(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Creates a new JDialogMultiScaleHornSchunk object.
JDialogN4MRIBiasFieldCorrection - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogN4MRIBiasFieldCorrection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogN4MRIBiasFieldCorrection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Create new dialog to set parameters for N4 MRI Bias Field Correction algorithm.
JDialogNColors - Class in gov.nih.mipav.view.dialogs: Simple dialog to change the number of colors in the histogram LUT.
JDialogNColors(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNColors: Creates modal dialog for entering number of colors for histogram LUT.
JDialogNearlyCircleToCircle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of a nearly circular region which will be conformally mapped to a circle.
JDialogNearlyCircleToCircle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Creates a new JDialogNearlyCircleToCircle object.
JDialogNearlyCircleToCircle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Creates new dialog.
JDialogNIFTIChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to choose what type of NIFTI file to write.
JDialogNIFTIChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Creates new dialog.
JDialogNLMeans_filt2D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogNLMeans_filt2D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNLMeans_filt2D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Creates a new JDialogNLMeans_filt2D object.
JDialogNLNoiseReduction - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogNLNoiseReduction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNLNoiseReduction(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Creates a new JDialogNLNoiseReduction object.
JDialogNMSuppression - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogNMSuppression() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNMSuppression(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Creates a new JDialogNMSuppression object.
JDialogNoise - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogNoise() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNoise: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNoise(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNoise: Constructor.
JDialogNoiseLevel - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogNoiseLevel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNoiseLevel(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Creates new dialog for entering parameters for Noise Level.
JDialogNonlocalMeansFilter - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogNonlocalMeansFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogNonlocalMeansFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Creates a new JDialogNonlocalMeansFilter object.
JDialogOpacityControls - Class in gov.nih.mipav.view.dialogs: Simple dialog to change Opacity Settings (1 = opaque, 0 = transparent).
JDialogOpacityControls(Frame, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Creates new dialog with a slider and close button.
JDialogOpacityControls(Frame, float, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Deprecated.
JDialogOpacityControls(Frame, SurfacePaint, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Creates new dialog with a slider and close button.
JDialogOpacityControls(Frame, SurfacePaint_WM, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Creates new dialog with a slider and close button.
JDialogOpacityControls(Frame, VOIManagerInterface, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls
JDialogOpacityControls(Frame, ViewControlsImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Creates new dialog with a slider and close button.
JDialogOpacityControls(Frame, ViewControlsImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Deprecated.
JDialogOpen - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogOpen() - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpen: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogOpen(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOpen: Constructor.
JDialogOrder - Class in gov.nih.mipav.view.dialogs: Confirmation dialog used in AFNI to decide whether to reorder the image to dicom order.
JDialogOrder(Frame, int[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOrder: Creates new dialog.
JDialogOrientMatrix - Class in gov.nih.mipav.view.dialogs: Dialog used to determine how the transformation matrix should be adjusted to account for different coordinate systems.
JDialogOrientMatrix(Frame, JDialogBase) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: Constructor.
JDialogOverlay - Class in gov.nih.mipav.view.dialogs: Title: JDialogOverlay
JDialogOverlay(Frame, boolean, String, ViewJComponentEditImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogOverlay: constructor to be called from ViewJFrameImage.
JDialogOverlay.JDialogChooseOverlay - Class in gov.nih.mipav.view.dialogs: Title: JDialogDICOMTags
JDialogOverlay.JDialogChooseOverlay.HeaderListener - Class in gov.nih.mipav.view.dialogs: class that will sort the table when header is clicked.
JDialogPadImages - Class in gov.nih.mipav.view.dialogs: Creates the dialog to pad blank images to an active image.
JDialogPadImages() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPadImages: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPadImages(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPadImages: Creates new dialog for removing slices.
JDialogPaintGrow - Class in gov.nih.mipav.view.dialogs: Dialog to get the upper and lower bounds for the region grow used by the paint functions.
JDialogPaintGrow(Frame, SurfacePaint, Vector<PaintGrowListener>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintGrow(Frame, SurfacePaint_WM, Vector<PaintGrowListener>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintGrow(Frame, Frame, Vector<PaintGrowListener>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintGrow(Frame, Vector<PaintGrowListener>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintGrow(Frame, Vector<PaintGrowListener>, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintGrow(Frame, Vector<PaintGrowListener>, boolean, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Creates new dialog and sets up GUI components.
JDialogPaintRGBComponents - Class in gov.nih.mipav.view.dialogs: Simple dialog to change Opacity Settings (1 = opaque, 0 = transparent).
JDialogPaintRGBComponents(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents: Creates new dialog with a slider and close button.
JDialogPaintVasculature - Class in gov.nih.mipav.view.dialogs: Dialog to facilitate the painting of a region of an image (such as the vascualture in a liver mip).
JDialogPaintVasculature(ViewJFrameBase) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Create the paint vasculature dialog.
JDialogParticleAnalysisNew - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogParticleAnalysisNew() - Constructor for class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogParticleAnalysisNew(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Creates new dialog.
JDialogPatellaTraceSectionsNetherland - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Patella segmentation for Netherland data.
JDialogPatellaTraceSectionsNetherland(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Constructor. the parent frame
JDialogPatellaTraceSectionsNetherland.Line - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPatellaTraceSectionsNetherland.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogPatellaTraceSectionsNetherland.Range - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Ending slice start and end indexes.
JDialogPatellaTraceSectionsNetherland.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: shape descriptor class.
JDialogPatellaTraceSectionsNetherland.TracingPoint - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPatellaTraceSectionsNIH - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class is the driver for the AAM classification.
JDialogPatellaTraceSectionsNIH(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Constructor. the parent frame
JDialogPatellaTraceSectionsNIH.Line - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPatellaTraceSectionsNIH.ModelString - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPatellaTraceSectionsNIH.PolygonShapeInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Polygon shape info class to do shape comparison after the AAM classification applied to do the segmentation.
JDialogPatellaTraceSectionsNIH.Range - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: Ending slice start and end indexes.
JDialogPatellaTraceSectionsNIH.ShapeFactor - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: shape descriptor class.
JDialogPatellaTraceSectionsNIH.TracingPoint - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogPbBoundaryDetection - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogPbBoundaryDetection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPbBoundaryDetection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Creates new dialog for entering parameters for Pb boundary detection.
JDialogPhaseCongruency - Class in gov.nih.mipav.view.dialogs
JDialogPhaseCongruency(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
JDialogPhasePreservingDenoising - Class in gov.nih.mipav.view.dialogs
JDialogPhasePreservingDenoising() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPhasePreservingDenoising(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Creates a new JDialogPhasePreservingDenoising object.
JDialogPointArea - Class in gov.nih.mipav.view.dialogs: Dialog that will call AlgorithmPointArea in order to calculate the average intensity through a volume around an area with a given size (x by y) at a given point.
JDialogPointArea() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPointArea: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPointArea(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPointArea: Constructor called from a ViewJFrameImage.
JDialogPointArea(Frame, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPointArea: Constructor called from ViewJComponentEditImage (by clicking on a point and selecting from menu).
JDialogPointArea.JTextFieldFilter - Class in gov.nih.mipav.view.dialogs: Filter that allows only integers or floating point numbers into a textfield while monitoring the numbers themselves in order to activate/deactivate related JCheckboxes.
JDialogPointArea.UpdateYSpaceAction - Class in gov.nih.mipav.view.dialogs: Make the x and y space bounds match if the constrain checkbox is selected.
JDialogPolygonToCircle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of 3 or more counterclockwise ordered polygon points for polygon to circle conformal mapping.
JDialogPolygonToCircle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Creates a new JDialogPolygonToCircle object.
JDialogPolygonToCircle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Creates new dialog.
JDialogPolygonToRectangle - Class in gov.nih.mipav.view.dialogs: Dialog to get user input of counterclockwise ordered polygon points, followed by selecting 4 of these vertices in counterclockwise order to be the corners of the rectangle.
JDialogPolygonToRectangle(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Creates a new JDialogPolygonToRectangle object.
JDialogPolygonToRectangle(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Creates new dialog.
JDialogPowerPaint - Class in gov.nih.mipav.view.dialogs: Dialog box for the paint power tools: morphology operations, object delete, etc.
JDialogPowerPaint(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Creates dialog for plugin.
JDialogPowerWatershed - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogPowerWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPowerWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Creates new dialog for entering parameters for Power watershed.
JDialogPowerWatershed.labelIndexComparator - Class in gov.nih.mipav.view.dialogs
JDialogPowerWatershed.labelIndexItem - Class in gov.nih.mipav.view.dialogs
JDialogPrincipalComponents - Class in gov.nih.mipav.view.dialogs: Dialog to create a filtered image using only selected principal components in the reconstruction and also to create an averaged image slice by simple averaging of the reconstructed image.
JDialogPrincipalComponents() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogPrincipalComponents(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: Creates new dialog to get info to run principal components algorithm.
JDialogPromise12_2DVolumetrieHED - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For Miccai promise 12 prostate data, we apply wp segmentation using HED deep learning model.
JDialogPromise12_2DVolumetrieHED(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Constructor.
JDialogPromise12_2DVolumetrieHED_map - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogPromise12_2DVolumetrieHED_map(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Constructor.
JDialogPromise12_2DVolumetrieHED_map.curvePair - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogPromise12_mhg_to_nii - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the first try to 3D convolution deep learning models. 3D-Unet.
JDialogPromise12_mhg_to_nii(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Constructor.
JDialogPromise12ConvertMask - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class simply convert the prostate images into isotropic (same x, y resolution ) images.
JDialogPromise12ConvertMask(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Constructor.
JDialogPromise12ConvertRestoOnePointFiveTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Atfer N4 correction, take those images with binary masks, transform again to 0.5mm x 0.5mm x 1.5 mm images.
JDialogPromise12ConvertRestoOnePointFiveTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Constructor.
JDialogPromise12ConvertRestoOnePointFiveTrain - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Atfer N4 correction, take those images with binary masks, transform again to 0.5mm x 0.5mm x 1.5 mm images.
JDialogPromise12ConvertRestoOnePointFiveTrain(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Constructor.
JDialogPromise12CropAndNormalizeTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: After 0.5mm x 0.5mm x 1.5 mm transform, apply the intensity normalization [0, 1000], save image and masks.
JDialogPromise12CropAndNormalizeTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Constructor.
JDialogPromise12CropAndNormalizeTrain - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: After 0.5mm x 0.5mm x 1.5 mm transform, apply the intensity normalization [0, 1000], save image and masks.
JDialogPromise12CropAndNormalizeTrain(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Constructor.
JDialogPromise12NIHDataToNii - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the first try to 3D convolution deep learning models. 3D-Unet.
JDialogPromise12NIHDataToNii(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Constructor.
JDialogPromise12Train3DCnns - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the first try to 3D convolution deep learning models. 3D-Unet.
JDialogPromise12Train3DCnns(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Constructor.
JDialogPromise12Train3DCnnsSmall - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the first try to 3D convolution deep learning models. 3D-Unet.
JDialogPromise12Train3DCnnsSmall(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Constructor.
JDialogProstate2DHEDmap - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DHEDmap(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Constructor.
JDialogProstate2DHEDmapCg - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DHEDmapCg(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Constructor.
JDialogProstate2DHEDmapMICCAI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the VOIs from HED prediction maps.
JDialogProstate2DHEDmapMICCAI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Constructor.
JDialogProstate2DHEDmapMICCAI_ced_scale - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the VOIs from HED prediction maps.
JDialogProstate2DHEDmapMICCAI_ced_scale(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Constructor.
JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstate2DHEDmapMICCAI_conversion - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the VOIs from HED prediction maps.
JDialogProstate2DHEDmapMICCAI_conversion(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Constructor.
JDialogProstate2DHEDmapSPIE_2017 - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the VOIs from HED prediction maps.
JDialogProstate2DHEDmapSPIE_2017(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Constructor.
JDialogProstate2DSlicesAtlasConverter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasConverter(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Constructor.
JDialogProstate2DSlicesAtlasCopyGTstl - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class copy ground truth stl file to destination directory.
JDialogProstate2DSlicesAtlasCopyGTstl(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Constructor.
JDialogProstate2DSlicesAtlasPngConverter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasPngConverter(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Constructor.
JDialogProstate2DSlicesAtlasPngConverter_JMI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasPngConverter_JMI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurface - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For ISBI 2017 paper: Data given: Dr.
JDialogProstate2DSlicesAtlasPngConverter3DSurface(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class attempts to generate the VOI from the HED predicted edge map (boundary map).
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For ISBI 2017 paper: ISBI, we only use MR images slices, no CED involved.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For ISBI 2017 paper: This class converts the HED generated energy maps into VOI contours.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Constructor.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the trial-and-error approach for HED deep learning experiment.
JDialogProstate2DSlicesAtlasPngConverterCentralGland(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the trial-and-error approach for HED deep learning experiment.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the trial-and-error approach for HED deep learning experiment.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the trial-and-error approach for HED deep learning experiment.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is the trial-and-error approach for HED deep learning experiment.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Constructor.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the trial-and-error test, which applying the NIH data for training, Prostate promise 12 data for testing.
JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the first attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the third attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the third attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the third attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the third attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the third attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Constructor.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is the second attempt to apply prostate segmentation on Promise 12 data.
JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Constructor.
JDialogProstate2DSlicesAtlasPngConverterTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is for SPIE paper: HED prostate MRI segmentation.
JDialogProstate2DSlicesAtlasPngConverterTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Constructor.
JDialogProstate2DSlicesAtlasPngConverterTest_JMI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For JMI 2017 paper: this class uses image processing methods that are different to the SPIE paper. 1) Read the MRI image with VOIs 2) Generate the binary masks 2) Crop the image with the 25% deduction 3) Scale image intensity to range 0 to 1000. 4) Generate the CED image. 5) Extract MRI image and CED image slices with corresponding binary image masks for HED to train the deep learning model.
JDialogProstate2DSlicesAtlasPngConverterTest_JMI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Constructor.
JDialogProstate2DSlicesAtlasPngConverterTrain - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This is for the SPIE paper: HED prostate segmentation.
JDialogProstate2DSlicesAtlasPngConverterTrain(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Constructor.
JDialogProstate2DSlicesAtlasPngConverterTrain_JMI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For JMI 2017 paper: this class uses image processing methods that are different to the SPIE paper. 1) Read the MRI image with VOIs 2) Generate the binary masks 2) Crop the image with the 25% deduction 3) Scale image intensity to range 0 to 1000. 4) Generate the CED image. 5) Extract MRI image and CED image slices with corresponding binary image masks for HED to train the deep learning model.
JDialogProstate2DSlicesAtlasPngConverterTrain_JMI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Constructor.
JDialogProstate2DSlicesPngTextFileConverter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For rest of the papers: this class generates the training list from the training fold. 5 fold cross-validation, each training fold contains the png slices from all other folds.
JDialogProstate2DSlicesPngTextFileConverter(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Constructor.
JDialogProstate2DSlicesPngTextFileConverterCentralGland - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class converts the 2D-volumetric approach axial, sagittal and coronal MRI and CED png slices into a file list.
JDialogProstate2DSlicesPngTextFileConverterCentralGland(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Constructor.
JDialogProstate2DSlicesPngTextFileConverterMICCAI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class simply converts the MRI and CED slices png files into a list file.
JDialogProstate2DSlicesPngTextFileConverterMICCAI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Constructor.
JDialogProstate2DSlicesPngTextFileConverterTest - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class generates the png file list for test cases.
JDialogProstate2DSlicesPngTextFileConverterTest(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Constructor.
JDialogProstate2DSlicesPngTextFileConverterTestCentralGland - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class converts the MRI and CED png slices into a file list.
JDialogProstate2DSlicesPngTextFileConverterTestCentralGland(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: Constructor.
JDialogProstate2DSlicesReconstrucion - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class reconstructs the 3D surface from the axial, coronal, sagittal VOI contours.
JDialogProstate2DSlicesReconstrucion(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Constructor.
JDialogProstate2DVolumetricHEDMiccaiProstate12 - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For the Miccai promise 12 data, this class simply read the png files and generates the png file list for HED to train the deep learning model.
JDialogProstate2DVolumetricHEDMiccaiProstate12(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Constructor.
JDialogProstate3DReconstruction - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class reconstruct the 3D prostate surface from the Deep learning generated VOIs.
JDialogProstate3DReconstruction(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Constructor.
JDialogProstateBoundaryFeatureTrain - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateBoundaryFeatureTrain() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Empty constructor needed for dynamic instantiation.
JDialogProstateBoundaryFeatureTrain(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Creates a new JDialogHaralickTexture object.
JDialogProstateCheckPngFile - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstateCheckPngFile(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Constructor.
JDialogProstateCheckPngFile.ImageAttributes - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateEvaluationSegmentation - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The class reads the nii binary masks and generates the comparison list for shell script.
JDialogProstateEvaluationSegmentation(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Constructor.
JDialogProstateEvaluationSegmentation_jmi - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the EvaluateSegmentation shell script to evaluate the binary masks between AAM vs.
JDialogProstateEvaluationSegmentation_jmi(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Constructor.
JDialogProstateExtractCEFeature - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: After the 3D images convert to 2D slices ( 512x512 ), this class picks the 2D slices, extracts the Coherence Enhanced diffusion based features, and saves those features with linear SVM readable file formats.
JDialogProstateExtractCEFeature(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Constructor.
JDialogProstateFeaturesClassification - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateFeaturesClassification() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Empty constructor needed for dynamic instantiation.
JDialogProstateFeaturesClassification(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Creates a new JDialogHaralickTexture object.
JDialogProstateFeaturesTrain - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateFeaturesTrain() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Empty constructor needed for dynamic instantiation.
JDialogProstateFeaturesTrain(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Creates a new JDialogHaralickTexture object.
JDialogProstateImageCategorize - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class exhaustively trains the 2D slices based Active Appearance Model (AAM).
JDialogProstateImageCategorize(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Constructor
JDialogProstateImageCategorize.perImageCost - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: NMI based image similarity measure cost class.
JDialogProstateImageCategorize.perShapeCost - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Shape similarity measure cost class.
JDialogProstateISBIfinalSurfaceCompare - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class converts 3D prostate surface into VOIs; saving them for comparison.
JDialogProstateISBIfinalSurfaceCompare(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Constructor.
JDialogProstateISBIfinalSurfaceConvertNII - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class converts 3D prostate surface into nii binary mask images.
JDialogProstateISBIfinalSurfaceConvertNII(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Constructor.
JDialogProstateISBIfinalSurfaceEvalSeg - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class read nii binary mask files, convert them into a shell script list.
JDialogProstateISBIfinalSurfaceEvalSeg(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Constructor.
JDialogProstateJMI_2017_HEDmap - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For testing phase: This class reads the original MRI images and HED deep learning model predicted MRI and CED energy map results, generates the final VOI contours.
JDialogProstateJMI_2017_HEDmap(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Constructor.
JDialogProstateJMI_2017_VOI_converter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For the JMI paper, this class converts VOI contours back to binary image masks.
JDialogProstateJMI_2017_VOI_converter(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Constructor.
JDialogProstateLearnFromFailure64TestCase - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstateLearnFromFailure64TestCase(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Constructor.
JDialogProstateLearnFromFailure64TestCase.ImageAttributes - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateLearnFromFailure64TrainingCase - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class convert the 3D images to 2D slices based atlas.
JDialogProstateLearnFromFailure64TrainingCase(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Constructor.
JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSaveBoundaryFeature2D - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSaveBoundaryFeature2D() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Empty constructor needed for dynamic instantiation.
JDialogProstateSaveBoundaryFeature2D(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Creates a new JDialogHaralickTexture object.
JDialogProstateSaveFeatures - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSaveFeatures() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Empty constructor needed for dynamic instantiation.
JDialogProstateSaveFeatures(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Creates a new JDialogHaralickTexture object.
JDialogProstateSaveFeatures2D - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSaveFeatures2D() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Empty constructor needed for dynamic instantiation.
JDialogProstateSaveFeatures2D(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Creates a new JDialogHaralickTexture object.
JDialogProstateSegmentationRegBSpline3D - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Semi-automatic MR Prostate segmentation - Registration and Fuzzy-C guided segmentation model.
JDialogProstateSegmentationRegBSpline3D(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: GUI interface for semi-automatic MR prostate segmentation.
JDialogProstateSegmentationRegBSpline3D.Edge - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSegmentationRegBSpline3D.PolarPoint - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSegmentationRegBSpline3DFast - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Semi-automatic MR Prostate segmentation - Registration guided segmentation model.
JDialogProstateSegmentationRegBSpline3DFast(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: GUI interface for semi-automatic MR prostate segmentation.
JDialogProstateSegmentationRegBSpline3DFast.Edge - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSegmentationRegBSpline3DFast.PolarPoint - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateSPIEcancerChallenge - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class is for ProstateX 2017 MICCAI challenge.
JDialogProstateSPIEcancerChallenge(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Constructor.
JDialogProstateSPIEcancerChallenge_HEDmap_image_alone - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class generates the VOI contours from HED predicted energy maps.
JDialogProstateSPIEcancerChallenge_HEDmap_image_alone(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Constructor.
JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For MICCAI ProstateX 2017 challenge testing cases, this file generates the VOI contours from HED predicted MRI+CED energy maps.
JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Constructor.
JDialogProstateSPIEcancerChallenge_noCED - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The MICCAI ProstateX challenge is the first try on MRI image alone.
JDialogProstateSPIEcancerChallenge_noCED(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Constructor.
JDialogProstateSPIEcancerChallengeNIH_boundary_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: After the MICCAI ProstateX challenge, I try to apply the prostate boundary based training on HED model.
JDialogProstateSPIEcancerChallengeNIH_boundary_train(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Constructor.
JDialogProstateSPIEcancerChallengeNIH_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The MICCAI ProstateX challenge is rolling over to prostate segmentation, which includes the whole prostate(wp) and central gland(cg).
JDialogProstateSPIEcancerChallengeNIH_train(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Constructor.
JDialogProstateSPIEcancerChallengeNIH_train_ced - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The MICCAI ProstateX challenge is rolling over to prostate segmentation, which includes the whole prostate(wp) and central gland(cg).
JDialogProstateSPIEcancerChallengeNIH_train_ced(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Constructor.
JDialogProstateSPIEcancerChallengeNIH_train_ced_ext - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The MICCAI ProstateX challenge is rolling over to prostate segmentation, which includes the whole prostate(wp) and central gland(cg).
JDialogProstateSPIEcancerChallengeNIH_train_ced_ext(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Constructor.
JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: The MICCAI ProstateX challenge is rolling over to prostate segmentation, which includes the whole prostate(wp) and central gland(cg).
JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Constructor.
JDialogProstateXReRunWholeProstate - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: For NIH prostate data, we apply wp and cg segmentation using HED deep learning model.
JDialogProstateXReRunWholeProstate(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Constructor.
JDialogProstateXReRunWholeProstateTestPatches - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogProstateXReRunWholeProstateTestPatches(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Constructor.
JDialogProstateXReRunWholeProstateTrainPatches - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class simply read the MR, CED images with corresponding binary image masks, converting them into image pairs ( MR slice with binary mask, CED slice with binary mask ).
JDialogProstateXReRunWholeProstateTrainPatches(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Constructor.
JDialogPyWavelets - Class in gov.nih.mipav.view.dialogs
JDialogPyWavelets() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Empty constructor needed for dynamic instantiation.
JDialogPyWavelets(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Construct the PyWavelets dialog.
JDialogQuantify - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogQuantify() - Constructor for class gov.nih.mipav.view.dialogs.JDialogQuantify: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogQuantify(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogQuantify: Creates a new JDialogQuantify object.
JDialogQuantifyMask - Class in gov.nih.mipav.view.dialogs: Simple dialog to change the number of colors in the histogram LUT.
JDialogQuantifyMask() - Constructor for class gov.nih.mipav.view.dialogs.JDialogQuantifyMask: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogQuantifyMask(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogQuantifyMask: Creates modal dialog for entering number of colors for histogram LUT.
JDialogRandomizeSliceOrder - Class in gov.nih.mipav.view.dialogs: Dialog to call the randomize the order of 3D dataset.
JDialogRandomizeSliceOrder() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRandomizeSliceOrder(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: Run the algorithm.
JDialogRawIO - Class in gov.nih.mipav.view.dialogs: Simple dialog to indicate type, dimensionality, of a raw image or image with a fixed length header in front of the image data.
JDialogRawIO(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRawIO: Creates new dialog for entering necessary info to read in RAW image.
JDialogRecordLUT - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRecordLUT(ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Create the LUT recorder dialog to record LUT.
JDialogRegionMergingViaBoundaryMelting - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRegionMergingViaBoundaryMelting() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegionMergingViaBoundaryMelting(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Creates new dialog for entering parameters for region merging via boundary melting.
JDialogRegionsFromPartialBorders - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRegionsFromPartialBorders() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegionsFromPartialBorders(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Creates new dialog for entering parameters for regions from partial borders.
JDialogRegistrationBSpline - Class in gov.nih.mipav.view.dialogs: This class is used to display the options to the user for performing 2D, 3D, and 2.5D B-Spline registration.
JDialogRegistrationBSpline() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Empty constructor needed for dynamic instantiation.
JDialogRegistrationBSpline(Frame, ModelImage, String[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Creates new registration dialog.
JDialogRegistrationBSpline.Controls - Class in gov.nih.mipav.view.dialogs: Private class which holds dialog controls associated with the values in the AlgorithmRegBSpline.Options class for a "pass" of registration.
JDialogRegistrationChamfer - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmChamfer.
JDialogRegistrationChamfer(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Creates dialog and calls init(), which sets up GUI.
JDialogRegistrationLeastSquares - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmRegLeastSquares.
JDialogRegistrationLeastSquares() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationLeastSquares(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Creates new registration dialog to get base image name.
JDialogRegistrationLeastSquares(Frame, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Creates a new JDialogRegistrationLeastSquares object.
JDialogRegistrationOAR25D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmRegOAR25D.
JDialogRegistrationOAR25D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationOAR25D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Creates new dialog for user to choose variables for internal registration.
JDialogRegistrationOAR2D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmRegOAR2D.
JDialogRegistrationOAR2D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationOAR2D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Creates new dialog for user to choose type of 2D image registration algorithm to run.
JDialogRegistrationOAR2D(Frame, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int, boolean, float, float, float, int, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Creates new dialog for user to choose type of 2D image registration algorithm to run.
JDialogRegistrationOAR35D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call AlgorithmRegOAR35D.
JDialogRegistrationOAR35D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationOAR35D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Creates new dialog for user to choose variables for internal registration.
JDialogRegistrationOAR3D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithm RegistrationOAR3D.
JDialogRegistrationOAR3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationOAR3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Creates new dialog for user to choose type of linear image registration algorithm to run.
JDialogRegistrationSIFT3D - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmRegLeastSquares.
JDialogRegistrationSIFT3D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationSIFT3D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Creates new registration dialog to get base image name.
JDialogRegistrationSIFT3D(Frame, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Creates a new JDialogRegistrationSIFT3D object.
JDialogRegistrationTPSpline - Class in gov.nih.mipav.view.dialogs: Dialog to get user input Selected image is match image, the image that gets transformed until it is registered to the base image.
JDialogRegistrationTPSpline() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Empty constructor for scripts.
JDialogRegistrationTPSpline(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Creates new dialog.
JDialogRegistrationValidation - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmRegValidation.
JDialogRegistrationValidation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationValidation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Creates new registration dialog to get base image name.
JDialogRegistrationValidation(Frame, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Creates a new JDialogRegistrationValidation object, used for bypassing the GUI.
JDialogRegPatientPos - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmRegPatientPos.
JDialogRegPatientPos() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegPatientPos(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Creates new dialog for registration.
JDialogRegularizedIsotropicDiffusion - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call a specified diffusion algorithm.
JDialogRegularizedIsotropicDiffusion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegularizedIsotropicDiffusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Creates a new JDialogRegularizedIsotropicDiffusion object.
JDialogRegVOILandmark - Class in gov.nih.mipav.view.dialogs: Dialog to register Kidney images, same spacial location, over time.
JDialogRegVOILandmark(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Creates new dialog to register images.
JDialogRemovePlugin - Class in gov.nih.mipav.view.dialogs: Simple dialog to remove a plugin.
JDialogRemovePlugin(JFrame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Constructs new dialog to remove plugins.
JDialogRemoveSlices - Class in gov.nih.mipav.view.dialogs: Creates the dialog to remove separate slices in an image.
JDialogRemoveSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRemoveSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Creates new dialog for removing slices.
JDialogRemoveTSlices - Class in gov.nih.mipav.view.dialogs: Creates the dialog to remove separate time slices in an image.
JDialogRemoveTSlices() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRemoveTSlices(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Creates new dialog for removing time slices.
JDialogRenameDirs - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
JDialogRenameDirs(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
JDialogRendererAVI - Class in gov.nih.mipav.view.renderer: Dialog that gets input needed for saving the 3D rendering motions to an AVI file.
JDialogRendererAVI() - Constructor for class gov.nih.mipav.view.renderer.JDialogRendererAVI: Used primarily for the script to store variables and run the algorithm.
JDialogRendererAVI(Frame) - Constructor for class gov.nih.mipav.view.renderer.JDialogRendererAVI: Creates a new JDialogRendererAVI object.
JDialogReorient - Class in gov.nih.mipav.view.dialogs: Dialog box for basic image processing tools
JDialogReorient() - Constructor for class gov.nih.mipav.view.dialogs.JDialogReorient: Empty constructor needed for dynamic instantiation.
JDialogReorient(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReorient
JDialogReorient(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReorient: Creates dialog for plugin.
JDialogReplaceBlankSlicesWithAverages - Class in gov.nih.mipav.view.dialogs: Dialog to replace the blank slices in 3D images with averages.
JDialogReplaceBlankSlicesWithAverages() - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogReplaceBlankSlicesWithAverages(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Sets the appropriate variables.
JDialogReplaceSlice - Class in gov.nih.mipav.view.dialogs: Title:
JDialogReplaceSlice(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: Creates a new JDialogReplaceSlice object.
JDialogReplaceValue - Class in gov.nih.mipav.view.dialogs: Dialog which replaces all occurances of one value in an image with another value.
JDialogReplaceValue() - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Empty constructor used for running scripts.
JDialogReplaceValue(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Construct the replace value dialog window and wait for user action.
JDialogReplaceValue.Values - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogReslice - Class in gov.nih.mipav.view.dialogs: Dialog to get interpolation choice, then call reslice algorithm.
JDialogReslice() - Constructor for class gov.nih.mipav.view.dialogs.JDialogReslice: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogReslice(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReslice: Creates new reslice dialog.
JDialogRGBConcat - Class in gov.nih.mipav.view.dialogs: Dialog to choose images, then call the RGBConcat algorithm.
JDialogRGBConcat() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRGBConcat(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Creates new dialog to enter parameters for RGBConcat algorithm.
JDialogRGBtoGray - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRGBtoGray() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRGBtoGray(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Sets variables needed to call algorithm.
JDialogRGBtoGrays - Class in gov.nih.mipav.view.dialogs: Dialog to call a algorithm to convert an RGB to a grayscale images.
JDialogRGBtoGrays() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRGBtoGrays(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Sets variables needed to call algorithm.
JDialogRGBtoHSB - Class in gov.nih.mipav.view.dialogs: Dialog to separate RGB channels into grayscale Hue, Saturation, and Brightness channels.
JDialogRGBtoHSB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRGBtoHSB(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Sets variables needed to call algorithm.
JDialogRotate - Class in gov.nih.mipav.view.dialogs: Dialog to call the image rotate.
JDialogRotate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRotate: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRotate(Frame, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRotate: Sets up variables but does not show dialog.
JDialogRuleBasedContrastEnhancement - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRuleBasedContrastEnhancement() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRuleBasedContrastEnhancement(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Creates new dialog for entering parameters for wavelet threshold.
JDialogRunScriptController - Class in gov.nih.mipav.view.dialogs
JDialogRunScriptController(String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptController: JDialogRunScriptController Constructor.
JDialogRunScriptModel - Class in gov.nih.mipav.view.dialogs
JDialogRunScriptModel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: Creates a new JDialogRunScriptModel object.
JDialogRunScriptView - Class in gov.nih.mipav.view.dialogs
JDialogRunScriptView(JDialogRunScriptController, JDialogRunScriptModel) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Creates a new JDialogRunScriptView object.
JDialogRunScriptView.ArrayListTransferHandler - Class in gov.nih.mipav.view.dialogs: Transfer handler used for dragging the images and vois into the tree.
JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRunScriptView.CustomCellRenderer - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRunScriptView.DropJListTarget - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRunScriptView.DropJTreeTarget - Class in gov.nih.mipav.view.dialogs: Class used to handle the dragging/dropping of images/vois into the script tree.
JDialogRunScriptView.PopupListener - Class in gov.nih.mipav.view.dialogs
JDialogRunScriptView.TreeMouseAdapter - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRunScriptView.TreeMouseDragAdapter - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogRunScriptView.TreeRenderer - Class in gov.nih.mipav.view.dialogs: ***************************************************************************************************** Inner classes to follow************************************************************************************************ ***** protected class ModelImageForScripting{ ModelImage modelImage; ModelImageForScripting(ModelImage modelImage){ this.modelImage = modelImage; } public ModelImage getModelImage(){ return this.modelImage; } public String toString(){ return modelImage.getImageName(); } }.
JDialogSaveDicom - Class in gov.nih.mipav.view.dialogs: Simple dialog to tell the program important information necessary for saving the DICOM file.
JDialogSaveDicom(Frame, FileInfoBase, FileInfoDicom, boolean, boolean, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Creates dialog for setting tag information for DICOM image.
JDialogSaveMergedVOIs - Class in gov.nih.mipav.view.dialogs: Simple dialog to save the 3 VOIs ( Sagittal, Coronal, Axial ) for each view, and merge them into one cloud points.
JDialogSaveMergedVOIs(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Constructor for Merging the 3 VOIs and save into one cloudy points file.
JDialogSaveMergedVOIs(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JDialogSaveMergedVOIs(Frame, String, String, String, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
JDialogSaveMinc - Class in gov.nih.mipav.view.dialogs: Simple dialog to tell the program important information about the MINC file.
JDialogSaveMinc(Frame, FileInfoBase, FileWriteOptions) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Constructs a new dialog to set necessary information for saving a MINC file.
JDialogSaveMincVersionChoice - Class in gov.nih.mipav.view.dialogs: Confirmation Dialog giving user the choice to write an analyze file , interfile file, or a nifti file.
JDialogSaveMincVersionChoice(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Creates new dialog.
JDialogSaveSlices - Class in gov.nih.mipav.view.dialogs: Simple dialog to indicate which slices should be saved.
JDialogSaveSlices(Frame, int, int, int, int, FileWriteOptions, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Constructs a save dialog meant for a 4D image.
JDialogSaveSlices(Frame, int, int, FileWriteOptions, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Constructs a save dialog meant for a 3D image.
JDialogSaveVistaParams - Class in gov.nih.mipav.view.dialogs
JDialogSaveVistaParams(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: constructor
JDialogScaleSaliency - Class in gov.nih.mipav.view.dialogs
JDialogScaleSaliency(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Creates a new JDialogScaleSaliency object.
JDialogScaleSaliency(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Creates new dialog.
JDialogSCDSegmentation - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSCDSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Empty constructor needed for dynamic instantiation.
JDialogSCDSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Construct the SCD segmentation dialog.
JDialogScriptableBase - Class in gov.nih.mipav.view.dialogs: All scriptable dialogs should inherit from this abstract class.
JDialogScriptableBase() - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Passthrough to JDialogBase constructor.
JDialogScriptableBase(boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Passthrough to JDialogBase constructor.
JDialogScriptableBase(Dialog, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Passthrough to JDialogBase constructor.
JDialogScriptableBase(Dialog, boolean, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Passthrough to JDialogBase constructor.
JDialogScriptableBase(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Passthrough to JDialogBase constructor.
JDialogScriptableTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call algorithmTransform.
JDialogScriptableTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogScriptableTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Constructs new transform dialog and sets up GUI components.
JDialogScriptableTransform(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Constructs new transform dialog and sets up GUI components.
JDialogScriptRecorder - Class in gov.nih.mipav.view.dialogs: This is the "record script" dialog.
JDialogScriptRecorder() - Constructor for class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Constructs a new script recorder dialog and turns recording on.
JDialogSelectChannelSequence - Class in gov.nih.mipav.view.dialogs: The purpose of this dialog is to allow the user to rearrange the channel order of an image before it is loaded.
JDialogSelectChannelSequence(ViewOpenImageSequence, int[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: Creates a new JDialogSelectChannelSequence object.
JDialogSelectDICOMColumnHeaders - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogSelectDICOMColumnHeaders(ViewJFrameDICOMParser) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: Creates a new JDialogSelectDICOMColumnHeaders object.
JDialogSequentialScanningWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSequentialScanningWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Empty constructor needed for dynamic instantiation.
JDialogSequentialScanningWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Creates a new JDialogSequentialScanningWatershed object.
JDialogServer - Class in gov.nih.mipav.view.dialogs: Simple dialog to set certain values for the new or edited server or destination.
JDialogServer(JFrame, String, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogServer: Creates new dialog for setting server.
JDialogServer(JFrame, String, String[], boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogServer: Creates new dialog for setting server.
JDialogShortcutEditor - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogShortcutEditor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: Default constructor...no arguments required.
JDialogShortcutEditor.ShortcutDialog - Class in gov.nih.mipav.view.dialogs: Title: Shortcut Dialog
JDialogShortcutEditor.StringVecComparator - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogShortestPathWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogShortestPathWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Empty constructor needed for dynamic instantiation.
JDialogShortestPathWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Creates a new JDialogShortestPathWatershed object.
JDialogShowCosts - Class in gov.nih.mipav.view.dialogs: Calculate costs for various voxel similarity cost functions that are used in registration and output them to the data window.
JDialogShowCosts() - Constructor for class gov.nih.mipav.view.dialogs.JDialogShowCosts: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogShowCosts(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogShowCosts: Creates new dialog.
JDialogShuffleList - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: This class simply shuffle the H5 list randomly.
JDialogShuffleList(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: Constructor.
JDialogSIFT - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSIFT() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSIFT: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSIFT(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSIFT: Creates a new JDialogMSFuzzyCMeans object.
JDialogSIFTImageSimilarity - Class in gov.nih.mipav.view.dialogs
JDialogSIFTImageSimilarity() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSIFTImageSimilarity(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Creates new SIFTImageSimilarity dialog and displays.
JDialogSimpleText - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Simple dialog that requests a name for the view.
JDialogSimpleText(JPanelRendererJ3D, RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: Creates the dialog, using the input parameters to place it on the screen.
JDialogSimpleText(JPanelMouse, RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: Creates the dialog, using the input parameters to place it on the screen.
JDialogSimulatedExposureFusion - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogSimulatedExposureFusion() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSimulatedExposureFusion(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Creates new dialog for entering parameters for simulated exposure fusion contrast enhancement.
JDialogSingleMRIImageSNR - Class in gov.nih.mipav.view.dialogs: Dialog to get user input signal 1 VOI, optional signal 2 VOI, background VOI or signal to use fuzzy c means to separate all pixels into signal and background and number of NMR receivers needed for MRI image SNR calculation.
JDialogSingleMRIImageSNR(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Creates a new JDialogSingleMRIImageSNR object.
JDialogSingleMRIImageSNR(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Creates new dialog.
JDialogSingleScaleHornSchunk - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images optical flow estimation based on single scale Horn-Schunk are executed in their own thread.
JDialogSingleScaleHornSchunk() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSingleScaleHornSchunk(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Creates a new JDialogSingleScaleHornSchunk object.
JDialogSK10_MRI_CED_map_pre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class generates the knees VOI contours from the deep learning (HNN) MRI and CED energy maps.
JDialogSK10_MRI_CED_map_pre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Constructor.
JDialogSK10_MRI_map_nopre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class generates the knees VOI contours from the deep learning HED MRI maps.
JDialogSK10_MRI_map_nopre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Constructor.
JDialogSkeletonize - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSkeletonize() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSkeletonize(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Creates new skeletonize dialog.
JDialogSKI_10_2D_axial_no_pre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogSKI_10_2D_axial_no_pre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Constructor.
JDialogSKI_10_3D_orthogonal_pre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
JDialogSKI_10_3D_orthogonal_pre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Constructor.
JDialogSKI10_femur_eval_no_pre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class prepare the evalution masks for segmentation result and ground truth label.
JDialogSKI10_femur_eval_no_pre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Constructor.
JDialogSKI10_femur_eval_pre - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class converts the original knees MRI images into isotropic images. 1) Convert the VOIs into binary image masks. 2) Transform the binary mask images to original image resolution. 3) Then, save the binary mask into .nii file format for comparison.
JDialogSKI10_femur_eval_pre(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Constructor.
JDialogSlantTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSlantTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Empty constructor needed for dynamic instantiation.
JDialogSlantTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Construct the Slant Transform dialog.
JDialogSliceAveraging - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSliceAveraging() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSliceAveraging(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Creates a new JDialogSliceAveraging object.
JDialogSM2 - Class in gov.nih.mipav.view.dialogs: Dialog to get user input for 3 parameter dynamic (contrast) enhanced MRI model or SM2 model
JDialogSM2(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSM2: Creates a new JDialogSM2 object.
JDialogSM2(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSM2: Creates new dialog.
JDialogSmoothMesh - Class in gov.nih.mipav.view.dialogs: User-interface for smoothing the ModelTriangleMesh surfaces.
JDialogSmoothMesh(Frame, boolean, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Creates new dialog to get iterations and alpha for smoothing a mesh surface.
JDialogSnake - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSnake(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSnake: Creates new dialog for entering parameters for algorithm.
JDialogSnake(Frame, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSnake: Creates new dialog for entering parameters for algorithm.
JDialogSobel - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSobel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSobel: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSobel(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSobel: Creates a new JDialogSobel object.
JDialogSpatialBroxOpticalFlow - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images optical flow estimation based on Brox et al. method (spatial version) are executed in their own thread.
JDialogSpatialBroxOpticalFlow() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSpatialBroxOpticalFlow(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Creates a new JDialogSpatialBroxOpticalFlow object.
JDialogSpectralClustering - Class in gov.nih.mipav.view.dialogs
JDialogSpectralClustering() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
JDialogSphereGeneration - Class in gov.nih.mipav.view.dialogs: Dialog to create an image with randomly spaced, aggregated, regular or uniform, or constrained spheres of the same size
JDialogSphereGeneration(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: Creates new dialog.
JDialogSplitAndMergeWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSplitAndMergeWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Empty constructor needed for dynamic instantiation.
JDialogSplitAndMergeWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Creates a new JDialogSplitAndMergeWatershed object.
JDialogStandalonePlugin - Class in gov.nih.mipav.plugins: This is an abstract class which should be subclassed by Generic plug-in dialogs which want to support being run with the -p command line switch without the rest of MIPAV (using the -hide option).
JDialogStandalonePlugin() - Constructor for class gov.nih.mipav.plugins.JDialogStandalonePlugin: Passthrough to JDialogBase constructor.
JDialogStandalonePlugin(boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandalonePlugin: Passthrough to JDialogBase constructor.
JDialogStandalonePlugin(Dialog, boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandalonePlugin: Passthrough to JDialogBase constructor.
JDialogStandalonePlugin(Frame, boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandalonePlugin: Passthrough to JDialogBase constructor.
JDialogStandaloneScriptablePlugin - Class in gov.nih.mipav.plugins: This is an abstract class which should be subclassed by Generic plug-in dialogs which want to support being run with the -p command line switch without the rest of MIPAV (using the -hide option).
JDialogStandaloneScriptablePlugin() - Constructor for class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin: Passthrough to JDialogScriptableBase constructor.
JDialogStandaloneScriptablePlugin(boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin: Passthrough to JDialogScriptableBase constructor.
JDialogStandaloneScriptablePlugin(Dialog, boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin: Passthrough to JDialogScriptableBase constructor.
JDialogStandaloneScriptablePlugin(Frame, boolean) - Constructor for class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin: Passthrough to JDialogScriptableBase constructor.
JDialogStandardDeviationThreshold - Class in gov.nih.mipav.view.dialogs: The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated.
JDialogStandardDeviationThreshold() - Constructor for class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: empty constructor
JDialogStandardDeviationThreshold(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: constructor
JDialogSubsample - Class in gov.nih.mipav.view.dialogs: Dialog for subsampling a 2D or 3D or 4D image by 2, 4, or 8.
JDialogSubsample() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubsample: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSubsample(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubsample: Constructor for creating the dialog via a parent frame.
JDialogSubset - Class in gov.nih.mipav.view.dialogs: Creates the dialog to create a 3D subset image from a 4D image.
JDialogSubset() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubset: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSubset(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubset: Creates new dialog for getting subset.
JDialogSubtractVOI - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogSubtractVOI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Constructor required for dynamic instantiation (during script execution).
JDialogSubtractVOI(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Creates new dialog.
JDialogSurfaceAVI - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Dialog that gets input needed for saving the 3D rendering motions to an AVI file.
JDialogSurfaceAVI(Frame) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Constructor to create surface AVI dialog.
JDialogSurfaceReconstruction - Class in gov.nih.mipav.view.dialogs
JDialogSurfaceReconstruction(Frame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Constructor for Merging the 3 VOIs and save into one cloudy points file.
JDialogSurfaceReconstruction(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
JDialogSurfaceReconstructionTBI - Class in gov.nih.mipav.view.renderer.WildMagic.TBI
JDialogSurfaceReconstructionTBI(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Constructor for Merging the 3 VOIs and save into one cloudy points file.
JDialogSwap34 - Class in gov.nih.mipav.view.dialogs: Dialog to call the AlgorithmSwap34 to delete the current image and create a new image with the third and fourth dimensions swapped.
JDialogSwap34() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwap34: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSwap34(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwap34: Used primarily for the script to store variables and run the algorithm.
JDialogSwap34(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwap34: Creates new dialog, but dialog is not visible.
JDialogSwapDims - Class in gov.nih.mipav.view.dialogs: Dialog to call the AlgorithmSwap34 to delete the current image and create a new image with the third and fourth dimensions swapped.
JDialogSwapDims() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapDims: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSwapDims(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapDims: Used primarily for the script to store variables and run the algorithm.
JDialogSwapDims(Frame, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapDims: Creates new dialog, but dialog is not visible.
JDialogSwapSlicesVolumes - Class in gov.nih.mipav.view.dialogs: Creates the dialog for swapping slices/volumes.
JDialogSwapSlicesVolumes() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogSwapSlicesVolumes(Frame, ModelImage, JDialogSwapSlicesVolumes.SwapMode) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Creates new dialog for removing slices.
JDialogSwapSlicesVolumes.ActionKeyListener - Class in gov.nih.mipav.view.dialogs
JDialogSwapSlicesVolumes.SwapMode - Enum in gov.nih.mipav.view.dialogs
JDialogSwapSlicesVolumes.TableTransferImporter - Class in gov.nih.mipav.view.dialogs: Imports by cut/copy/paste/drag/drop slice elements from part of parent JTable to another part of the JTable.
JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable - Class in gov.nih.mipav.view.dialogs: Describes how the TransferHandler should handle slice transfers.
JDialogSWI - Class in gov.nih.mipav.view.dialogs: This class displays a basic dialog for a MIPAV plug-in.
JDialogSWI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSWI: Constructor used for instantiation during script execution (required for dynamic loading).
JDialogSWI(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSWI: Creates new dialog for kidney segmentation from an abdominal cavity image using a plugin.
JDialogSymmetricNearestNeighbor - Class in gov.nih.mipav.view.dialogs
JDialogSymmetricNearestNeighbor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Empty constructor needed for dynamic instantiation.
JDialogSymmetricNearestNeighbor(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Construct the symmetric nearest neighbor smoothing dialog.
JDialogTalairach - Class in gov.nih.mipav.view.dialogs: Dialog to enter points for creating an Talaraich image.
JDialogTalairach(ViewJFrameTriImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTalairach: This method creates a dialog for selecting markers used for generating a Talairach view image from an AC-PC aligned view image.
JDialogTalairachTransform - Class in gov.nih.mipav.view.dialogs: Interface for the TalairachTransform plugin.
JDialogTalairachTransform(ViewUserInterface, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Used primarily for the script to store variables and run the algorithm.
JDialogTalairachTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Creates dialog for plugin.
JDialogTamuraTexture - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogTamuraTexture() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Empty constructor needed for dynamic instantiation.
JDialogTamuraTexture(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Creates a new JDialogTamuraTexture object.
JDialogTemporalBroxOpticalFlow - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images optical flow estimation based on Brox et al. method (temporal version) are executed in their own thread.
JDialogTemporalBroxOpticalFlow() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTemporalBroxOpticalFlow(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Creates a new JDialogTemporalBroxOpticalFlow object.
JDialogText - Class in gov.nih.mipav.view.dialogs: This is simple text dialog that displays in the center of the screen.
JDialogText(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogText: Constructs resizable dialog with text area in the middle.
JDialogText(Frame, String, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogText: Constructs a resizable dialog with a text area which can be filled; the scrollbar can be set to keep up with the updates (at the bottom).
JDialogTextGE - Class in gov.nih.mipav.view.dialogs: This is simple text dialog that displays in the center of the screen.
JDialogTextGE(Frame, String, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextGE: Constructs resizable dialog with text area in the middle.
JDialogTextGE4X - Class in gov.nih.mipav.view.dialogs: This is simple text dialog that displays in the center of the screen.
JDialogTextGE4X(Frame, String, ModelImage, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Constructs resizable dialog with text area in the middle.
JDialogTextureAnalysis - Class in gov.nih.mipav.view.dialogs
JDialogTextureAnalysis() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Empty constructor needed for dynamic instantiation.
JDialogTextureAnalysis(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Creates a new JDialogTextureAnalysis object.
JDialogTextureSegmentation - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogTextureSegmentation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTextureSegmentation(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Creates new dialog for entering parameters for texture segmentation.
JDialogThinning2D - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogThinning2D() - Constructor for class gov.nih.mipav.view.dialogs.JDialogThinning2D: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogThinning2D(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogThinning2D: Creates new dialog for entering parameters for 2D thinning.
JDialogThreshold - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogThreshold() - Constructor for class gov.nih.mipav.view.dialogs.JDialogThreshold: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogThreshold(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogThreshold: Creates a new JDialogThreshold object.
JDialogThreshold.CheckValueAction - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogThresholdLUT - Class in gov.nih.mipav.view.dialogs: Dialog is used by the ViewJFrameHistoLUT frame.
JDialogThresholdLUT(Frame, ModelImage, float, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: Creates new threshold LUT dialog.
JDialogThresholdRGB - Class in gov.nih.mipav.view.dialogs: Title: JDialogThresholdRGB
JDialogThresholdRGB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogThresholdRGB(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Used primarily for the script to store variables and run the algorithm.
JDialogThresholdRGB(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Creates a new JDialogThresholdRGB object.
JDialogTiltCorrection - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogTiltCorrection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTiltCorrection(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Creates a new JDialogTiltCorrection object.
JDialogTimeFitting - Class in gov.nih.mipav.view.dialogs
JDialogTimeFitting() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTimeFitting
JDialogTLRC - Class in gov.nih.mipav.view.dialogs: Dialog to enter points for creating an Talaraich image.
JDialogTLRC(ViewJFrameTriImage, ModelImage, ModelImage, ModelImage, TalairachTransformInfo, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTLRC: This method creates a dialog for selecting markers used for generating a Talairach view image from an AC-PC aligned view image
JDialogTopHat - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogTopHat() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTopHat: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTopHat(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTopHat: Constructor.
JDialogTrainingListGenerator - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: The class converts the 2D-volumetric approach axial, sagittal and coronal MRI and CED png slices (or MRI png slices alone) into a file list.
JDialogTrainingListGenerator(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Constructor.
JDialogTransformBSpline - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogTransformBSpline() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
JDialogTransformBSpline(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Sets the appropriate variables.
JDialogTransformBSpline(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Sets the appropriate variables.
JDialogTransformVOI - Class in gov.nih.mipav.view.dialogs
JDialogTransformVOI(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTransformVOI
JDialogTreMethod - Class in gov.nih.mipav.view.dialogs
JDialogTreMethod() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreMethod
JDialogTreMethod(Frame, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreMethod
JDialogTreMethod.ThresholdChoiceListener - Class in gov.nih.mipav.view.dialogs: This listener focuses on the user's choice of hard or smart thresholding.
JDialogTreT1 - Class in gov.nih.mipav.view.dialogs
JDialogTreT1() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT1: Blank constructor needed for dynamic instantiation.
JDialogTreT1(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT1: Construct the TRE dialog.
JDialogTreT1.FlipAngleChangeListener - Class in gov.nih.mipav.view.dialogs
JDialogTreT1.ProcessChoiceListener - Class in gov.nih.mipav.view.dialogs: This listener focuses on the TRE processing choice chosen.
JDialogTreT1.ScannerChoiceListener - Class in gov.nih.mipav.view.dialogs: This listener focuses on the type of scanner used to acquire the images.
JDialogTreT2 - Class in gov.nih.mipav.view.dialogs: The dialog for the calculation of Tre methods.
JDialogTreT2() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT2: Empty constructor needed for dynamic instantiation.
JDialogTreT2(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT2: Construct the barrel/pin cushion correction dialog.
JDialogTreT2.DialogThree - Class in gov.nih.mipav.view.dialogs
JDialogTreT2.DialogTwo - Class in gov.nih.mipav.view.dialogs
JDialogTriFrameLinker - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogTriFrameLinker(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Used primarily for the script to store variables and run the algorithm.
JDialogTriFrameLinker(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Creates new image calculator dialog and displays.
JDialogTriImageTransformation - Class in gov.nih.mipav.view.dialogs: Dialog to transform an image in the tri planar view based on a bounding box.
JDialogTriImageTransformation(ViewJFrameTriImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Creates confirmation dialog for transforming triplanar image.
JDialogTriImageTransformation(ViewJFrameTriImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Creates confirmation dialog for cropping triplanar image.
JDialogTrilateralFilter - Class in gov.nih.mipav.view.dialogs
JDialogTrilateralFilter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTrilateralFilter(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Creates a new JDialogTrilateralFilter object.
JDialogTrim - Class in gov.nih.mipav.view.dialogs: Simple dialog to change trim parameters.
JDialogTrim(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTrim: Creates new trim parameter dialog with slider.
JDialogTVL1FLOW - Class in gov.nih.mipav.view.dialogs: Dialog to get user input any two images optical flow estimation based on total variation and the L1 norm are executed in their own thread.
JDialogTVL1FLOW() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogTVL1FLOW(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Creates a new JDialogTVL1FLOW object.
JDialogTwoMRIImagesSNR - Class in gov.nih.mipav.view.dialogs: Dialog to get user input two MRI image SNR Algorithms are executed in their own thread.
JDialogTwoMRIImagesSNR(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Creates a new JDialogFRET object.
JDialogTwoMRIImagesSNR(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Creates new dialog.
JDialogUltErode - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogUltErode() - Constructor for class gov.nih.mipav.view.dialogs.JDialogUltErode: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogUltErode(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUltErode: Constructor.
JDialogUninstallPlugin - Class in gov.nih.mipav.view.dialogs: Simple dialog to uninstall a plugin.
JDialogUninstallPlugin(String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Does not create the uninstall dialog, instead performs the install algorithm as if only the name plugin had been selected, but confirmation has not occurred.
JDialogUninstallPlugin(JFrame) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Creates new dialog.
JDialogUnionFindComponentLabelling - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogUnionFindComponentLabelling() - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Empty constructor needed for dynamic instantiation.
JDialogUnionFindComponentLabelling(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Creates a new JDialogUnionFindComponentLabelling object.
JDialogUnionFindWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogUnionFindWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Empty constructor needed for dynamic instantiation.
JDialogUnionFindWatershed(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Creates a new JDialogUnionFindWatershed object.
JDialogUnknownIO - Class in gov.nih.mipav.view.dialogs: Simple dialog to indicate type of image when the program doesn't recognize the name.
JDialogUnknownIO(Frame, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Creates and displays dialog.
JDialogUnsharpMask - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogUnsharpMask() - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogUnsharpMask(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Constructor.
JDialogVABRA - Class in gov.nih.mipav.view.dialogs
JDialogVABRA() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVABRA: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogVABRA(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVABRA: Creates new image calculator dialog and displays.
JDialogVesselEnhancement - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogVesselEnhancement() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogVesselEnhancement(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Creates new dialog for entering parameters for multiscale vessel enhancement filtering.
JDialogVOIBoolean - Class in gov.nih.mipav.view.dialogs: Dialog to use difference, intersection, exclusive or, or intersection on 2 VOIs
JDialogVOIBoolean(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Creates a new JDialogVOIBoolean object.
JDialogVOIBoolean(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Creates new dialog.
JDialogVOIBoolean(Frame, VOIManagerInterface, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Creates new dialog for entering parameters for algorithm.
JDialogVOIExtraction - Class in gov.nih.mipav.view.dialogs: Dialog to call the VOI extraction.
JDialogVOIExtraction(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: Sets variables needed for calling algorithm.
JDialogVOIHausdorffDistance - Class in gov.nih.mipav.view.dialogs
JDialogVOIHausdorffDistance(VOIHandlerInterface, VOIVector) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: constructor
JDialogVOIHausdorffDistance.JPanelAddRemoveVOI - Class in gov.nih.mipav.view.dialogs: controllas the lists between left and right side.
JDialogVOIHausdorffDistance.VOIHighlighter - Class in gov.nih.mipav.view.dialogs: An active listener for VOIEvents and ListSelectionEvents, this class will ensure the selected state of the VOI and its name in a dialog's list is the same.
JDialogVOIHausdorffDistance.VOITreeRenderer - Class in gov.nih.mipav.view.dialogs
JDialogVOILogicalOperations - Class in gov.nih.mipav.view.dialogs
JDialogVOILogicalOperations(VOIHandlerInterface, VOIVector) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: constructor
JDialogVOILogicalOperations.JPanelAddRemoveVOI - Class in gov.nih.mipav.view.dialogs: controllas the lists between left and right side.
JDialogVOILogicalOperations.JPanelImageOptions - Class in gov.nih.mipav.view.dialogs
JDialogVOILogicalOperations.JPanelLogicalOptions - Class in gov.nih.mipav.view.dialogs
JDialogVOILogicalOperations.VOIHighlighter - Class in gov.nih.mipav.view.dialogs: An active listener for VOIEvents and ListSelectionEvents, this class will ensure the selected state of the VOI and its name in a dialog's list is the same.
JDialogVOILogicalOperations.VOITreeRenderer - Class in gov.nih.mipav.view.dialogs
JDialogVOIShapeInterpolation - Class in gov.nih.mipav.view.dialogs
JDialogVOIShapeInterpolation() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: constructor
JDialogVOIShapeInterpolation(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: constructor
JDialogVOIShapeInterpolation(ModelImage, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: constructor
JDialogVOISplitter - Class in gov.nih.mipav.view.dialogs: Title:
JDialogVOISplitter(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOISplitter
JDialogVOISplitter(Frame, ModelImage, Vector3f, Vector3f) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOISplitter
JDialogVOIStatistics - Class in gov.nih.mipav.view.dialogs: Dialog for calculating statistics of a (set of) Volumes of Interest.
JDialogVOIStatistics() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Empty constructor needed for dynamic instantiation.
JDialogVOIStatistics(ModelImage, VOIVector) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: builds and packs the frame. does not set it visible.
JDialogVOIStatistics(VOIVector) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: builds and packs the frame. does not set it visible.
JDialogVOIStatistics.JPanelAddRemoveVOI - Class in gov.nih.mipav.view.dialogs: controllas the lists between left and right side.
JDialogVOIStatistics.JPanelStatisticFileFormatOptions - Class in gov.nih.mipav.view.dialogs: File-format options panel to select output format for the display of the statistics output file.
JDialogVOIStatistics.JPanelStatisticsOptions - Class in gov.nih.mipav.view.dialogs: Panel holding all statistics options and allowing the user-selection.
JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener - Class in gov.nih.mipav.view.dialogs: An action listener for the statistics options that also controls which statistics can be calculated.
JDialogVOIStatistics.VOIHighlighter - Class in gov.nih.mipav.view.dialogs: An active listener for VOIEvents and ListSelectionEvents, this class will ensure the selected state of the VOI and its name in a dialog's list is the same.
JDialogVOIStats - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogVOIStats() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats: Empty constructor needed for dynamic instantiation.
JDialogVOIStats(VOIHandlerInterface, ModelImage, VOI) - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats: Constructor for the JDialogVOIStats.
JDialogVOIStats.CancelListener - Class in gov.nih.mipav.view.dialogs: Does nothing.
JDialogVOIStats.OkColorListener - Class in gov.nih.mipav.view.dialogs: Pick up the selected color and call method to change the VOI color.
JDialogVOIStats.VOITreePopup - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogVOIStats.VOITreeRenderer - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogVolumeAnnotation - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JDialogVolumeAnnotation(ModelImage, VOI, int, boolean, boolean, boolean, JPanelAnnotationAnimation) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogVolumeAnnotation
JDialogVolViewResample - Class in gov.nih.mipav.view.renderer: Dialog to ask user to resample the images to power of 2 before volume rendering.
JDialogVolViewResample(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.view.renderer.JDialogVolViewResample: Creates the dialog, using the input parameters to place it on the screen.
JDialogWalshHadamardTransform - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogWalshHadamardTransform() - Constructor for class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Empty constructor needed for dynamic instantiation.
JDialogWalshHadamardTransform(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Construct the Walsh Hadamard Transform dialog.
JDialogWatershed - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogWatershed() - Constructor for class gov.nih.mipav.view.dialogs.JDialogWatershed: Empty constructor for scripting.
JDialogWatershed(JFrame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWatershed: Creates new watershed dialog.
JDialogWaveletFuse - Class in gov.nih.mipav.view.dialogs: Dialog to get user input, then call the algorithm.
JDialogWaveletFuse() - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogWaveletFuse(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Creates a new JDialogWaveletFuse object.
JDialogWaveletMultiscaleProducts - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogWaveletMultiscaleProducts() - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogWaveletMultiscaleProducts(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Creates new dialog for entering parameters for wavelet multiscale products.
JDialogWaveletThreshold - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
JDialogWaveletThreshold() - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Empty constructor needed for dynamic instantiation (used during scripting).
JDialogWaveletThreshold(Frame, ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Creates new dialog for entering parameters for wavelet threshold.
JDialogWinLevel - Class in gov.nih.mipav.view.dialogs: Dialog creates 2 sliders which adjust the level and window of an image.
JDialogWinLevel(ModelImage, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWinLevel: Constructor.
JDialogWinLevel(Frame, ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWinLevel: Constructor.
JDialogWinLevel(Frame, ModelImage, ModelLUT, float[]) - Constructor for class gov.nih.mipav.view.dialogs.JDialogWinLevel: Constructor.
JDialogZoom - Class in gov.nih.mipav.view.dialogs: This is a custom swing dialog that sets variables for zooming in and out.
JDialogZoom(Frame, ViewJComponentEditImage, float) - Constructor for class gov.nih.mipav.view.dialogs.JDialogZoom: Creates new zoom dialog.
JDialogZoom.ZoomMode - Enum in gov.nih.mipav.view.dialogs
JDITHER_FS - gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE
JDITHER_NONE - gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE
JDITHER_ORDERED - gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE
jdiv_round_up(int, int) - Method in class gov.nih.mipav.model.file.libjpeg
JENNRICH_AND_SAMPSON - Variable in class gov.nih.mipav.model.algorithms.Lmmin
JENNRICH_AND_SAMPSON - Variable in class gov.nih.mipav.model.algorithms.LsqFit
JENNRICH_AND_SAMPSON - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
JENNRICH_AND_SAMPSON - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
JennrichAndSampsonFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.JennrichAndSampsonFunction
JERR_BAD_ALIGN_TYPE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_ALLOC_CHUNK - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_BUFFER_MODE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_COMPONENT_ID - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_CROP_SPEC - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_DCT_COEF - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_DCTSIZE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_DROP_SAMPLING - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_HUFF_TABLE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_IN_COLORSPACE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_J_COLORSPACE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_LENGTH - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_LIB_VERSION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_MCU_SIZE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_POOL_ID - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_PRECISION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_PROG_SCRIPT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_PROGRESSION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_SAMPLING - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_SCAN_SCRIPT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_STATE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_STRUCT_SIZE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BAD_VIRTUAL_ACCESS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_BUFFER_SIZE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_CANT_SUSPEND - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_CCIR601_NOTIMPL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_COMPONENT_COUNT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_CONVERSION_NOTIMPL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_DAC_INDEX - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_DAC_VALUE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_DHT_INDEX - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_DQT_INDEX - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_EMPTY_IMAGE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_EMS_READ - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_EMS_WRITE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_EOI_EXPECTED - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_FILE_READ - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_FILE_WRITE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_FRACT_SAMPLE_NOTIMPL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_HUFF_CLEN_OUTOFBOUNDS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_HUFF_MISSING_CODE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_IMAGE_TOO_BIG - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_INPUT_EMPTY - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_INPUT_EOF - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_MISMATCHED_QUANT_TABLE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_MISSING_DATA - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_MODE_CHANGE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_ARITH_TABLE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_BACKING_STORE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_HUFF_TABLE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_IMAGE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_QUANT_TABLE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NO_SOI - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NOT_COMPILED - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_NOTIMPL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_OUT_OF_MEMORY - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_QUANT_COMPONENTS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_QUANT_FEW_COLORS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_QUANT_MANY_COLORS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_SOF_BEFORE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_SOF_DUPLICATE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_SOF_NO_SOS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_SOF_UNSUPPORTED - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_SOI_DUPLICATE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_TFILE_CREATE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_TFILE_READ - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_TFILE_SEEK - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_TFILE_WRITE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_TOO_LITTLE_DATA - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_UNKNOWN_MARKER - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_VIRTUAL_BUG - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_WIDTH_OVERFLOW - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_XMS_READ - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JERR_XMS_WRITE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JFIF_major_version - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
JFIF_minor_version - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
JfifDescriptor(MetadataExtractor.JfifDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfifDescriptor
JfifDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory
JfifReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfifReader
JfifReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JfifReaderTest
JFileTreeCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel.JFileTreeCellRenderer
JFileTreeNode(File) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode: Creates a new file tree node.
JFileTreeNode(File, boolean, TreeNode) - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode: Creates a new file tree node.
JFileTreePanel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel
JFrameHistogram - Class in gov.nih.mipav.view: Lookup table interface for either grayscale or color (RGB) images.
JFrameHistogram(Frame, ModelImage, ModelImage, ModelStorageBase, ModelStorageBase) - Constructor for class gov.nih.mipav.view.JFrameHistogram: Creates the JFrameHistogram class.
JFrameHistogram(Frame, ViewJComponentRegistration, ModelImage, ModelImage, ModelStorageBase, ModelStorageBase) - Constructor for class gov.nih.mipav.view.JFrameHistogram: Creates the JFrameHistogram class.
JFrameRegistrationMosaic - Class in gov.nih.mipav.view.dialogs: JFrameRegistrationMosaic is a window/gui that enables the user to manually align two images with the mouse and then call the AlgorithmRegOAR2D registration algorithm to create a mosaic image with the two aligned images.
JFrameRegistrationMosaic() - Constructor for class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: JFrameRegistrationMosaic - Creates new window for manual (mouse-based) registration of two images.
JFrameSurfaceMaterialProperties - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Window for setting the surface material properties.
JFrameSurfaceMaterialProperties(JPanelSurface, int, GeneralLight[], float, Material) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Creates the Surface Material Editor window.
JFrameSurfaceMaterialProperties_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Window for setting the surface material properties.
JFrameSurfaceMaterialProperties_WM(JPanelSurface_WM, int, Light[], MaterialState) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Creates the Surface Material Editor window.
JfxxDescriptor(MetadataExtractor.JfxxDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfxxDescriptor
JfxxDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory
JfxxReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JfxxReader
jgeadd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
JHUFF_TBL() - Constructor for class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL
JIMI - Static variable in class gov.nih.mipav.model.file.FileUtility: Java Image Manangement Interface file type.
jinit_1pass_quantizer(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_2pass_quantizer(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_arith_decoder(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_color_deconverter(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_d_coef_controller(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_d_main_controller(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_d_post_controller(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_huff_decoder(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_input_controller(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_inverse_dct(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_marker_reader(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_master_decompress(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_memory_mgr(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_merged_upsampler(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jinit_upsampler(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
JInterfaceBase - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JInterfaceBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Default constructor.
JInterfaceBase(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Construct Base.
JInterfaceBase.CancelListener - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Does nothing.
JInterfaceBase.DrawingPanel - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Wrapper in order to hold the control panel layout in the JScrollPane.
JInterfaceBase.OkColorListener - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Pick up the selected color and call method to change the color.
jlamp1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
JMSG_COPYRIGHT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JMSG_LASTMSGCODE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JMSG_LENGTH_MAX - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
JMSG_NOMESSAGE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JMSG_STR_PARM_MAX - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
JMSG_VERSION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
jobName - Variable in class gov.nih.mipav.model.file.FileInfoFits
jobz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
JOCTET - Variable in class gov.nih.mipav.model.file.libjpeg
joff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
join(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
join(Iterable<? extends CharSequence>, String) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.StringUtil
join(T[], String) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.StringUtil
joining_points - Variable in class gov.nih.mipav.model.algorithms.Erfinv
joins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
JOINT_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Default case
JointHistogram3D(float[], float[], int, int[], int[][], int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
JointHistogram3D(float[], float[], int, int[], int[], int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
JointHistogram3D(float[], float[], int, int, int[], int[][][], int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
JP2 - Static variable in class gov.nih.mipav.model.file.FileUtility
JP2_CFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
JPanel3DMouse_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanel3DMouse_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Constructor.
JPanelAddRemoveVOI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI: Sets the Add/Remove VOI panel to Y-Axis layout and with images.
JPanelAddRemoveVOI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI: Sets the Add/Remove VOI panel to Y-Axis layout and with images.
JPanelAddRemoveVOI() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI: Sets the Add/Remove VOI panel to Y-Axis layout and with images.
JPanelAlgorithmOutputOptions - Class in gov.nih.mipav.view.components: This panel encapsulates radio buttons which allow the user to indicate whether a new image should be generated by the algorithm dialog parent of the panel and whether the whole image or a VOI region should be processed.
JPanelAlgorithmOutputOptions(ModelImage) - Constructor for class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: Create the algorithm output options panel.
JPanelAnnotationAnimation - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelAnnotationAnimation(VolumeTriPlanarRender, int, Vector<String>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
JPanelAnnotationAnimation.OkColorListener - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Pick up the selected color and call method to change the color.
JPanelAnnotations - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
JPanelAnnotations(VOILatticeManagerInterface, VolumeTriPlanarRender, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
JPanelAnonymizeImage - Class in gov.nih.mipav.view: Custom panel for anonymizing DICOM images.
JPanelAnonymizeImage() - Constructor for class gov.nih.mipav.view.JPanelAnonymizeImage: constructor to build a panel allowing user to find which tags are available to anonymize.
JPanelAnonymizePrivateTags - Class in gov.nih.mipav.view: The panel class used in anonymize image/directory that displays the private tags in a tree format along with check boxes so that the organization between groups is apparent.
JPanelAnonymizePrivateTags() - Constructor for class gov.nih.mipav.view.JPanelAnonymizePrivateTags: The default constructor that occurs in the anonymize directory dialog before a profile has been loaded to populate the tree
JPanelAnonymizePrivateTags(ModelImage, Vector<FileDicomSQItem>) - Constructor for class gov.nih.mipav.view.JPanelAnonymizePrivateTags: The constructor used in the anonymize image dialog that will populate the tree and assign the layout based on the file info.
JPanelAnonymizePublicTags - Class in gov.nih.mipav.view: The panel class used in anonymize image/directory that displays the public tags in a tree format along with check boxes so that the organization between groups is apparent.
JPanelAnonymizePublicTags() - Constructor for class gov.nih.mipav.view.JPanelAnonymizePublicTags: The default constructor that occurs in the anonymize directory dialog before a profile has been loaded to populate the tree
JPanelAnonymizePublicTags(ModelImage, Vector<FileDicomSQItem>) - Constructor for class gov.nih.mipav.view.JPanelAnonymizePublicTags: The constructor used in the anonymize image dialog that will populate the tree and assign the layout based on the file info.
JPanelAVIChoice - Class in gov.nih.mipav.view.renderer: Title: JDialogAVIChoice
JPanelAVIChoice(Frame) - Constructor for class gov.nih.mipav.view.renderer.JPanelAVIChoice: Creates new dialog.
JPanelAVIChoice(Frame, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelAVIChoice: Creates a new JPanelAVIChoice object.
JPanelBrainSurfaceFlattener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
JPanelBrainSurfaceFlattener(MjCorticalAnalysis, ModelImage, ViewJFrameVolumeView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Create the control-panel for the brainsurfaceFlattener interface:
JPanelBrainSurfaceFlattener_WM - Class in gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM
JPanelBrainSurfaceFlattener_WM(CorticalAnalysisRender, VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Create the control-panel for the brainsurfaceFlattener interface:
JPanelCamera - Class in gov.nih.mipav.view.renderer.J3D: JPanelCamera creates the camera control panel for the 3D visulization frame.
JPanelCamera(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Creates new dialog for converting type of image.
JPanelCamera.DownButton - Class in gov.nih.mipav.view.renderer.J3D: Helper class which sets the appropriate icons for the down button.
JPanelCamera.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelCamera.EmptyButton - Class in gov.nih.mipav.view.renderer.J3D: Helper class which create the empty button.
JPanelCamera.LeftButton - Class in gov.nih.mipav.view.renderer.J3D: Helper class which sets the appropriate icons for the left button.
JPanelCamera.RightButton - Class in gov.nih.mipav.view.renderer.J3D: Helper class which sets the appropriate icons for the right button.
JPanelCamera.StandardMouse - Class in gov.nih.mipav.view.renderer.J3D: Class used to send Standard mouse events to the canvas.
JPanelCamera.UpButton - Class in gov.nih.mipav.view.renderer.J3D: Helper class which sets the appropriate icons for the up button.
JPanelChecklist - Class in gov.nih.mipav.view: Creates a JPanel to hold a scrolling list of checkboxes.
JPanelChecklist() - Constructor for class gov.nih.mipav.view.JPanelChecklist: Constructor to build a panel allowing user to find which tags are available to anonymize.
JPanelClip - Class in gov.nih.mipav.view.renderer.J3D: Title: JPanelClip
JPanelClip(SurfaceRender, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip: 3D texture surface renderer clipping dialog control.
JPanelClip_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelClip_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: 3D clipping dialog control.
JPanelClip_WM(VolumeTriPlanarRender) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: 3D clipping dialog control.
JPanelClip.CancelListener - Class in gov.nih.mipav.view.renderer.J3D: Does nothing.
JPanelClip.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelClip.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D: Pick up the selected color and call method to change the VOI color.
JPanelColorChannels - Class in gov.nih.mipav.view.components: A panel containing checkboxes which allow the user to indicate which channels of a color image should be processed.
JPanelColorChannels(ModelImage) - Constructor for class gov.nih.mipav.view.components.JPanelColorChannels: Construct the panel, with all of the channels marked to be processed by default.
JPanelColorChannels(ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.view.components.JPanelColorChannels: Construct the panel.
JPanelCurves - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
JPanelCurves(VOILatticeManagerInterface, VolumeTriPlanarRender, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
JPanelCustomBlend - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelCustomBlend(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend: Constructor.
JPanelDisplay - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: The display panel control the red bounding box frame ( on/off ), texture aligned rendering mode, cubic controk, perspective and parrallel viewing mode, and back ground color.
JPanelDisplay(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Creates new dialog for turning bounding box frame on and off.
JPanelDisplay_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: The display panel control the red bounding box frame ( on/off ), texture aligned rendering mode, cubic controk, perspective and parallel viewing mode, and back ground color.
JPanelDisplay_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Creates new dialog for turning bounding box frame on and off.
JPanelDisplay.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Does nothing.
JPanelDisplay.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelDisplay.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Pick up the selected color and call method to change the color.
JPanelDTIEstimateTensor - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIEstimateTensor(DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
JPanelDTIFiberTracking - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIFiberTracking(DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Constructs the Fiber Tracking input panel:
JPanelDTIFiberTracking(JDialog, DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Constructs the Fiber Tracking input panel:
JPanelDTIImportData - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: The copyright below only pertains to methods within JDialogImageInfo that relate to the Gradient Table Creator for Philips PAR/REC files V3/V4 that is displayed in the DTI tab.
JPanelDTIImportData(DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
JPanelDTIParametersPanel - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIParametersPanel(VolumeTriPlanarInterfaceDTI, VolumeTriPlanarRender) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
JPanelDTIParametersPanel.CancelListener - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: Cancel the color dialog, change nothing.
JPanelDTIParametersPanel.OkColorListener - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: Pick up the selected color and call method to change the fiber bundle color.
JPanelDTIParametersPanel.VOIParams - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIPreprocessing - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIPreprocessing(DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
JPanelDTIVisualization - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelDTIVisualization(JDialog, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Creates the DTI Visualization panel inside the parent dialog.
JPanelEdit - Class in gov.nih.mipav.view: An abstract class for editing a single, specfic value.
JPanelEdit() - Constructor for class gov.nih.mipav.view.JPanelEdit: Builds a standard JPanel.
JPanelEditAxisOrientation - Class in gov.nih.mipav.view: An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditAxisOrientation(String) - Constructor for class gov.nih.mipav.view.JPanelEditAxisOrientation: Sets the panel to contain a standard, white JComboBox.
JPanelEditBoolean - Class in gov.nih.mipav.view: An EditPanel which allows the user to select a boolean value ('true' or 'false').
JPanelEditBoolean(String) - Constructor for class gov.nih.mipav.view.JPanelEditBoolean: Sets the panel to contain a standard, white JComboBox.
JPanelEditChar - Class in gov.nih.mipav.view: Very simple EditPanel which merely edit a letter at a time.
JPanelEditChar(char) - Constructor for class gov.nih.mipav.view.JPanelEditChar: Sets the panel to contain a standard, white JTextField.
JPanelEditDate - Class in gov.nih.mipav.view: panel contains 3 fields: 2 comboboxes (day, month), 1 text field (year), panel handles proper day/month and leap-year input.
JPanelEditDate(String, boolean) - Constructor for class gov.nih.mipav.view.JPanelEditDate: Builds the panel with 3 fields.
JPanelEditDefault - Class in gov.nih.mipav.view: Very simple EditPanel which merely contains some text.
JPanelEditDefault(String) - Constructor for class gov.nih.mipav.view.JPanelEditDefault: Sets the panel to contain a standard, white JTextField.
JPanelEditImageOrientation - Class in gov.nih.mipav.view: An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditImageOrientation(String) - Constructor for class gov.nih.mipav.view.JPanelEditImageOrientation: Sets the panel to contain a standard, white JComboBox.
JPanelEditModality - Class in gov.nih.mipav.view: An EditPanel which allows the user to select from a list of modalities (from FileInfoBase.modalityStr).
JPanelEditModality(String) - Constructor for class gov.nih.mipav.view.JPanelEditModality: Sets the panel to contain a standard, white JComboBox.
JPanelEditOrientation - Class in gov.nih.mipav.view: An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditOrientation(String) - Constructor for class gov.nih.mipav.view.JPanelEditOrientation: Sets the panel to contain a standard, white JComboBox.
JPanelEditRace - Class in gov.nih.mipav.view: An EditPanel which allows the user to select from a list of races.
JPanelEditRace(String) - Constructor for class gov.nih.mipav.view.JPanelEditRace: Sets the panel to contain a standard, white JComboBox.
JPanelEditSetOrParam - Class in gov.nih.mipav.view: Very simple EditPanel which merely contains some text.
JPanelEditSetOrParam(String) - Constructor for class gov.nih.mipav.view.JPanelEditSetOrParam: Sets the panel to contain a standard, white JTextField.
JPanelEditSex - Class in gov.nih.mipav.view: adds panel with combobox to change field containing the patient's sex.
JPanelEditSex(String) - Constructor for class gov.nih.mipav.view.JPanelEditSex: allows the user to select a DICOM allowable sex: Male, Female, Other; also allows "no value" and will return "" when asked about that value.
JPanelEditTime - Class in gov.nih.mipav.view: panel contains 4 fields: 3 comboboxes (hour, minute, second), 1 text field (decimal fraction of a second),
JPanelEditTime(String, boolean) - Constructor for class gov.nih.mipav.view.JPanelEditTime: builds a panel containing 4 fields: 3 comboboxes (hour, minute, second), 1 text field (decimal fraction of a second),
JPanelEditValueType - Class in gov.nih.mipav.view: An EditPanel which allows the user to select from a list of parameter value types.
JPanelEditValueType(String) - Constructor for class gov.nih.mipav.view.JPanelEditValueType: Sets the panel to contain a standard, white JComboBox.
JPanelEPIDistortionCorrection - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
JPanelEPIDistortionCorrection(DTIPipeline) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Creates the EPI-Distortion correction panel for the DTI Pipeline
JPanelFileSelection - Class in gov.nih.mipav.view: provides a nice plug-in swing panel to simplify the file-selection process.
JPanelFileSelection() - Constructor for class gov.nih.mipav.view.JPanelFileSelection: basic constructor, creates a panel with textfield and browser. defaults to pointing at the user's default directory, There is no title for either the file chooser or the panel itself, and the file chooser will search for both files and directories.
JPanelFileSelection(boolean) - Constructor for class gov.nih.mipav.view.JPanelFileSelection: custom constructor -- selects the preference for the file chooser to permit choice of selection of directories only or both files and directories.
JPanelFileSelection(File, String) - Constructor for class gov.nih.mipav.view.JPanelFileSelection: custom constructor -- Selection of the starting directory, and the title on the border.
JPanelFileSelection(File, String, boolean) - Constructor for class gov.nih.mipav.view.JPanelFileSelection: custom constructor -- Selection of the starting directory, and the title on the border.
JPanelFlythruMove - Class in gov.nih.mipav.view.renderer.flythroughview: Title: JPanelFlythruMove
JPanelFlythruMove(FlyThroughRenderInterface) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: User interface to control the fly through renderer events.
JPanelFlythruMove.DownButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the down button.
JPanelFlythruMove.DrawingPanel - Class in gov.nih.mipav.view.renderer.flythroughview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelFlythruMove.EmptyButton - Class in gov.nih.mipav.view.renderer.flythroughview: DOCUMENT ME!
JPanelFlythruMove.LeftButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the left button.
JPanelFlythruMove.LeftRotateButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the left button.
JPanelFlythruMove.PlayMouse - Class in gov.nih.mipav.view.renderer.flythroughview: Thread that plays.
JPanelFlythruMove.RightButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the right button.
JPanelFlythruMove.RightRotateButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the left button.
JPanelFlythruMove.StandardMouse - Class in gov.nih.mipav.view.renderer.flythroughview: Class used to send Standard mouse events to the canvas.
JPanelFlythruMove.UpButton - Class in gov.nih.mipav.view.renderer.flythroughview: Helper class which sets the appropriate icons for the up button.
JPanelGeodesic - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Title: JPanelGeodesic
JPanelGeodesic(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Contructor to initialize the geodesic control panel and create geodesic image scene graph.
JPanelGeodesic_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Title: JPanelGeodesic
JPanelGeodesic_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Constructor to initialize the geodesic control panel and create geodesic image scene graph.
JPanelGeodesic.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelGPU(BorderLayout) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase.JPanelGPU
JPanelHistogram - Class in gov.nih.mipav.view
JPanelHistogram(ModelImage, ModelStorageBase, boolean) - Constructor for class gov.nih.mipav.view.JPanelHistogram: Creates the JPanelHistogram.
JPanelHistogram(JFrameHistogram, ModelImage, ModelStorageBase, boolean) - Constructor for class gov.nih.mipav.view.JPanelHistogram: Creates the JPanelHistogram, with the JFrameHistogram as the containing class.
JPanelHistogram(JFrameHistogram, ModelImage, ModelStorageBase, boolean, boolean) - Constructor for class gov.nih.mipav.view.JPanelHistogram: Creates the JPanelHistogram, with the JFrameHistogram as the containing class.
JPanelHistoLUT - Class in gov.nih.mipav.view.renderer: Deprecated.
JPanelHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.
JPanelHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.
JPanelHistoLUT.DrawingPanel - Class in gov.nih.mipav.view.renderer: Deprecated.

Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelHistoRGB - Class in gov.nih.mipav.view.renderer: Deprecated.
JPanelHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.
JPanelHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.
JPanelHistoRGB(ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB, boolean) - Constructor for class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.
JPanelHistoRGB.DrawingPanel - Class in gov.nih.mipav.view.renderer: Deprecated.

Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelImageOptions() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelImageOptions
JPanelLattice - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
JPanelLattice(VOILatticeManagerInterface, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
JPanelLights - Class in gov.nih.mipav.view.renderer.J3D: Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame.
JPanelLights(JPanelSurface, SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelLights: Constructor.
JPanelLights_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame.
JPanelLights_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Constructor.
JPanelLights_WM(VolumeTriPlanarRender) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
JPanelLights.CancelListener - Class in gov.nih.mipav.view.renderer.J3D: Cancel the color dialog, change nothing.
JPanelLights.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D: Pick up the selected color and call method to change the surface color.
JPanelListController - Class in gov.nih.mipav.view: panel to hold and transfer items between two lists. extend to modify the application of the 'left', 'right', and 'delete' or 'up', 'down' and 'delete'.
JPanelListController() - Constructor for class gov.nih.mipav.view.JPanelListController: defualt position is all buttons vertical.
JPanelListController(boolean) - Constructor for class gov.nih.mipav.view.JPanelListController: Creates a list controller, with the buttons in the default layout, but which can be set to display images only or text.
JPanelListController(int) - Constructor for class gov.nih.mipav.view.JPanelListController: Creates a list controller, with the buttons in the given layout, but which defaults to display images only.
JPanelListController(int, boolean) - Constructor for class gov.nih.mipav.view.JPanelListController: Creates a list controller, with the buttons in the given layout, and which can be set to display images only or text.
JPanelListSelection() - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Creates a new JPanelListSelection object.
JPanelListSelection(boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: I don't want to bother with any other layouts right now.
JPanelListSelection(int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Creates a new JPanelListSelection object.
JPanelLogicalOptions() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelLogicalOptions: Creates a default layout, of the radio button options laid-out vertically.
JPanelMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Mouse recorded dialog.
JPanelMouse(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Constructs a new mouse recorder dialog.
JPanelMouse.ChangeNameDialog - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Change the name of the selected item in the item list.
JPanelMouse.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelMouse.PlayMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: * Thread that plays.
JPanelMouse.RecordMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Thread that records screen capture.
JPanelMousePlotter - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Mouse recorded dialog.
JPanelMousePlotter(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Constructs a new mouse recorder dialog.
JPanelMousePlotter.ChangeNameDialog - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Change the name of the selected item in the item list.
JPanelMousePlotter.PlayMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Thread that plays.
JPanelMousePlotter.RecordMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Thread that records screen capture.
JPanelMultiDimensionalTransfer - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: This panel contains the display panel for the 2D Histogram user-interface.
JPanelMultiDimensionalTransfer(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Creates new dialog for turning bounding box frame on and off.
JPanelNavigation - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: The navigation (for virtual bronchoscopy) fly-thru control panel.
JPanelNavigation(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Constructor.
JPanelPixelExclusionSelector - Class in gov.nih.mipav.view.dialogs: A dialog to permits choosing a range (positive or negative, and floating-point) of values with the intention of the selection indicating a range of values.
JPanelPixelExclusionSelector(JPanelStatisticsList, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Creates an exclusion panel which has a checkbox to make the range controls available, a selector to choose the range controls ("Between", "Above" and "Below"), and the range inputs for these controls.
JPanelPixelExclusionSelector.ExcluderOptionsActionListener - Class in gov.nih.mipav.view.dialogs: This class listens to excluder options, changing the available statistics calculation options depending on whether all contours are still closed.
JPanelPixelExclusionSelector.RangeType - Enum in gov.nih.mipav.view.dialogs
JPanelPositions - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelPositions(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: 3D clipping dialog control.
JPanelProbe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame.
JPanelProbe(SurfaceRender, ViewJFrameBase, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Constructor to initialize the probe control panel.
JPanelProbe.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Cancel the color dialog, change nothing.
JPanelProbe.DrawingPane - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Helper class for resizing.
JPanelProbe.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Pick up the selected color and call method to change the surface color.
JPanelProgressBar - Class in gov.nih.mipav.view: Title: JPanelProgressBar
JPanelProgressBar() - Constructor for class gov.nih.mipav.view.JPanelProgressBar: Creates a new JPanelProgressBar object.
JPanelProgressBar(int, int) - Constructor for class gov.nih.mipav.view.JPanelProgressBar: Creates a new JPanelProgressBar object.
JPanelRendererBase - Class in gov.nih.mipav.view.renderer: This class is the base for all the other dialogs.
JPanelRendererBase() - Constructor for class gov.nih.mipav.view.renderer.JPanelRendererBase: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JPanelRendererJ3D - Class in gov.nih.mipav.view.renderer.J3D: This class is the base for all the other dialogs.
JPanelRendererJ3D() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JPanelRendererJ3D(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Constructor that sets the parent frame of the dialog and whether or not the dialog is modal.
JPanelRenderMode_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelRenderMode_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Constructor.
JPanelRenderOptionsRayCast - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
JPanelRenderOptionsRayCast(VolumeRendererRayCast) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Creates new dialog for turning bounding box frame on and off.
JPanelRenderOptionsRayCast.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Does nothing.
JPanelRenderOptionsRayCast.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelRenderOptionsRayCast.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Pick up the selected color and call method to change the VOI color.
JPanelRenderOptionsShearWarp - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
JPanelRenderOptionsShearWarp(VolumeRendererShearWarp) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Creates new dialog for turning bounding box frame on and off.
JPanelRenderOptionsShearWarp.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Does nothing.
JPanelRenderOptionsShearWarp.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelRenderOptionsShearWarp.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Pick up the selected color and call method to change the VOI color.
JPanelSculptor - Class in gov.nih.mipav.view.renderer.J3D: Title: JPanelSculptor
JPanelSculptor(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Contructor.
JPanelSculptor_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Title: JPanelSculptor
JPanelSculptor_WM(VolumeTriPlanarInterface, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Contructor.
JPanelSculptor.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelSigmas - Class in gov.nih.mipav.view.components: A panel containing fields which allow the user to input sigmas in three dimensions (of, for example, a gaussian kernel).
JPanelSigmas(ModelImage) - Constructor for class gov.nih.mipav.view.components.JPanelSigmas: Construct the sigma panel.
JPanelSlices - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame.
JPanelSlices(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Creates new dialog for turning slices bounding box frame on and off.
JPanelSlices_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame.
JPanelSlices_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Constructor.
JPanelSlices.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Does nothing.
JPanelSlices.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelSlices.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Pick up the selected color and call method to change the VOI color.
JPanelStatisticFileFormatOptions() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticFileFormatOptions: Creates a default layout, of the radio button options laid-out vertically.
JPanelStatisticsList - Class in gov.nih.mipav.view: Custom panel for placing statistics in a selectable checklist panel.
JPanelStatisticsList() - Constructor for class gov.nih.mipav.view.JPanelStatisticsList: constructor to build a panel allowing user to find which tags are available to anonymize.
JPanelStatisticsOptions() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: Creates a default view of the panel, including all options displayed.
JPanelSurface - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: A Java3D-based dialog for surfaces represented as triangle meshes.
JPanelSurface(SurfaceRender, Canvas3D, TransformGroup, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Creates the Java3D scene graph for the application.
JPanelSurface_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelSurface_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Constructor.
JPanelSurface_WM.OkColorListener - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: Pick up the selected color and call method to change the color.
JPanelSurface.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Cancel the color dialog, change nothing.
JPanelSurface.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Pick up the selected color and call method to change the surface color.
JPanelSurfaceBox - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
JPanelSurfaceBox(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Creates new dialog for turning bounding box frame on and off.
JPanelSurfaceBox.CancelListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Does nothing.
JPanelSurfaceBox.OkColorListener - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: Pick up the selected color and call method to change the VOI color.
JPanelSurfaceTexture - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: JPanelSurfaceTexture.
JPanelSurfaceTexture(SurfaceRender, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Constructor:
JPanelSurfaceTexture_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface: JPanelSurfaceTexture.
JPanelSurfaceTexture_WM(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Constructor.
JPanelTreeController - Class in gov.nih.mipav.view: panel to hold and transfer items between two trees. extend to modify the application of the 'left', 'right', and 'delete' or 'up', 'down' and 'delete'.
JPanelTreeController() - Constructor for class gov.nih.mipav.view.JPanelTreeController: defualt position is all buttons vertical.
JPanelTreeController(boolean) - Constructor for class gov.nih.mipav.view.JPanelTreeController: Creates a tree controller, with the buttons in the default layout, but which can be set to display images only or text.
JPanelTreeController(int) - Constructor for class gov.nih.mipav.view.JPanelTreeController: Creates a tree controller, with the buttons in the given layout, but which defaults to display images only.
JPanelTreeController(int, boolean) - Constructor for class gov.nih.mipav.view.JPanelTreeController: Creates a tree controller, with the buttons in the given layout, and which can be set to display images only or text.
JPanelView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Dialog to control the view of the 3D surface viewer and renderer.
JPanelView(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Constructs a new dialog for controlling the view of the renderer.
JPanelView.DownButton - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Helper class which sets the appropriate icons for the down button.
JPanelView.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelView.LeftButton - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Helper class which sets the appropriate icons for the left button.
JPanelView.RightButton - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Helper class which sets the appropriate icons for the right button.
JPanelView.StandardMouse - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Class used to send Standard mouse events to the canvas.
JPanelView.UpButton - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Helper class which sets the appropriate icons for the up button.
JPanelVirtualEndoscopySetup - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Control panel to set up the virtual endoscopy volume view.
JPanelVirtualEndoscopySetup(FlythruRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Used primarily for the script to store variables and run the algorithm.
JPanelVirtualEndoscopySetup(FlythruRender, ViewJFrameVolumeView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Creates endoscopy registration control panel.
JPanelVirtualEndoscopySetup_WM - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Control panel to set up the virtual endoscopy volume view.
JPanelVirtualEndoscopySetup_WM(FlyThroughRender) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Creates endoscopy registration control panel.
JPanelVirtualEndoscopySetup_WM.DrawingPanel - Class in gov.nih.mipav.view.renderer.WildMagic.flythroughview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelVirtualEndoscopySetup.DrawingPanel - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: Wrapper in order to hold the control panel layout in the JScrollPane.
JPanelVolOpacity - Class in gov.nih.mipav.view.renderer.J3D: Deprecated.
JPanelVolOpacity(RenderViewBase, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.
JPanelVolOpacity(VolumeTriPlanarInterface, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.
JPanelVolOpacityBase - Class in gov.nih.mipav.view.renderer.J3D: Deprecated.
JPanelVolOpacityBase(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
JPanelVolOpacityBase(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
JPanelVolOpacityRGB - Class in gov.nih.mipav.view.renderer: Deprecated.
JPanelVolOpacityRGB(RenderViewBase, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.
JPanelVolOpacityRGB(VolumeTriPlanarInterface, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.
JPanelVolume4D - Class in gov.nih.mipav.view.renderer.WildMagic.Interface
JPanelVolume4D(VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D: Constructor.
JPanelVolumeOpacity - Class in gov.nih.mipav.view: Simple panel containing the volume renderer opacity controls.
JPanelVolumeOpacity(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.JPanelVolumeOpacity: Creates new dialog for converting type of image.
JPanelVolumeOpacity(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.JPanelVolumeOpacity: Creates new dialog for converting type of image.
JPanelVolumeOpacity(ModelImage, ModelImage, ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.JPanelVolumeOpacity
jpeg - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
jpeg - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
Jpeg - gov.nih.mipav.model.file.MetadataExtractor.FileType
JPEG - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .jpeg, .jpg.
jpeg_abort(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_alloc_huff_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_alloc_quant_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
JPEG_APP0 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_aritab - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_calc_output_dimensions(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_color_quantizer() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_color_quantizer
jpeg_color_space - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
JPEG_COM - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_common_struct() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_common_struct
jpeg_component_info() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
jpeg_consume_input(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_core_output_dimensions(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_CreateDecompress(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_d_coef_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_d_coef_controller
jpeg_decompress_struct() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
jpeg_destroy(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_destroy_decompress(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_entropy_decoder
JPEG_EOI - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_error_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
jpeg_fill_bit_buffer(libjpeg.bitread_working_state, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_finish_decompress(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
JPEG_HEADER_OK - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_HEADER_TABLES_ONLY - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_huff_decode(libjpeg.bitread_working_state, int, int, libjpeg.d_derived_tbl, int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_10x10(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_10x10(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_10X10 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_10x5(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_10x5(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_10X5 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_11x11(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_11x11(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_11X11 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_12x12(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_12x12(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_12X12 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_12x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_12x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_12X6 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_13x13(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_13x13(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_13X13 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_14x14(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_14x14(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_14X14 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_14x7(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_14x7(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_14X7 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_15x15(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_15x15(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_15X15 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_16x16(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_16x16(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_16X16 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_16x8(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_16x8(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_16X8 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_1x1(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_1x1(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_1X1 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_1x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_1x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_1X2 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_2x1(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_2x1(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_2X1 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_2x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_2x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_2X2 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_2x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_2x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_2X4 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_3x3(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_3x3(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_3X3 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_3x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_3x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_3X6 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_4x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_4x2(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_4X2 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_4x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_4x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_4X4 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_4x8(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_4x8(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_4X8 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_5x10(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_5x10(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_5X10 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_5x5(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_5x5(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_5X5 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_6x12(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_6x12(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_6X12 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_6x3(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_6x3(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_6X3 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_6x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_6x6(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_6X6 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_7x14(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_7x14(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_7X14 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_7x7(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_7x7(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_7X7 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_8x16(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_8x16(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_8X16 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_8x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_8x4(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_8X4 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_9x9(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_9x9(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_9X9 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_idct_islow(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
jpeg_idct_islow(libjpeg.jpeg_decompress_struct, libjpeg.jpeg_component_info, short[], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg_IDCT
JPEG_IDCT_ISLOW - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_LIB_VERSION - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_LIB_VERSION_MAJOR - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_LIB_VERSION_MINOR - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_make_d_derived_tbl(libjpeg.jpeg_decompress_struct, boolean, int, libjpeg.d_derived_tbl[]) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_marker_struct() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
JPEG_MAX_DIMENSION - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_mem_available(libjpeg.jpeg_decompress_struct, long, long, long) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_mem_init(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_mem_term(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_message_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
jpeg_natural_order - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order2 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order3 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order4 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order5 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order6 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_natural_order7 - Variable in class gov.nih.mipav.model.file.libjpeg
jpeg_progress_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.jpeg_progress_mgr
JPEG_REACHED_EOI - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_REACHED_SOS - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_read_header(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_read_scanlines(libjpeg.jpeg_decompress_struct, byte[][], int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_read_scanlines(libjpeg.jpeg_decompress_struct, short[][], int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_resync_to_restart(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg
JPEG_ROW_COMPLETED - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_RST0 - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_SCAN_COMPLETED - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_SEGMENT_PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.DuckyReader
JPEG_SEGMENT_PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader: Exif data stored in JPEG files' APP1 segment are preceded by this six character preamble "Exif\0\0".
JPEG_SEGMENT_PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
JPEG_SEGMENT_PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
jpeg_start_decompress(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_std_error(libjpeg.jpeg_error_mgr) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_std_huff_table(libjpeg.jpeg_decompress_struct, boolean, int) - Method in class gov.nih.mipav.model.file.libjpeg
jpeg_stdio_src(libjpeg.jpeg_decompress_struct, RandomAccessFile) - Method in class gov.nih.mipav.model.file.libjpeg
JPEG_SUSPENDED - Static variable in class gov.nih.mipav.model.file.libjpeg
JPEG_TABLES - Static variable in class gov.nih.mipav.model.file.FileSVS
JPEG_TABLES - Static variable in class gov.nih.mipav.model.file.FileTiff
jpeg_zigzag_order - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order2 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order3 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order4 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order5 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order6 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg_zigzag_order7 - Static variable in class gov.nih.mipav.model.file.libjpeg
jpeg2000Compression - Variable in class gov.nih.mipav.model.file.FileSVS
JPEGACInputStream(FileSVS.JPEGHuffmanInputStream, int[]) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
JPEGACInputStream(FileTiff.JPEGHuffmanInputStream, int[]) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
JPEGBitInputStream(InputStream, FileSVS.JPEGInputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
JPEGBitInputStream(InputStream, FileTiff.JPEGInputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
JpegCommentDescriptor(MetadataExtractor.JpegCommentDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDescriptor
JpegCommentDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDirectory
JpegCommentReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentReader
JpegComponent(int, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent
JPEGComponentInputStream(int) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
JPEGComponentInputStream(int) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
JpegComponentTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegComponentTest
jpegCompression - Variable in class gov.nih.mipav.model.file.FileSVS
jpegCompression - Variable in class gov.nih.mipav.model.file.FileTiff
jpegData - Variable in class gov.nih.mipav.model.file.FileDicom: Buffer used when reading in encapsulated JPEG images.
JPEGDCInputStream(FileSVS.JPEGHuffmanInputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGDCInputStream
JPEGDCInputStream(FileTiff.JPEGHuffmanInputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGDCInputStream
JPEGDCTInputStream(FileSVS.JPEGHuffmanInputStream, FileSVS.JPEGHuffmanInputStream, int[], int) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
JPEGDCTInputStream(FileTiff.JPEGHuffmanInputStream, FileTiff.JPEGHuffmanInputStream, int[], int) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
jpegDecompresser(byte[], byte[], int) - Method in class gov.nih.mipav.model.file.FileSVS
jpegDecompresser(byte[], byte[], int) - Method in class gov.nih.mipav.model.file.FileTiff
JpegDescriptor(MetadataExtractor.JpegDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor
JpegDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest
JpegDhtReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegDhtReader
JpegDhtReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest
JpegDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory
JpegDirectoryTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest
JpegDnlReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegDnlReader
JPEGFastDCTInputStream(FileSVS.JPEGHuffmanInputStream, FileSVS.JPEGHuffmanInputStream, int[], int) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
JPEGFastDCTInputStream(FileTiff.JPEGHuffmanInputStream, FileTiff.JPEGHuffmanInputStream, int[], int) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
jpegFiles - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
JPEGHuffmanInputStream(FileSVS.JPEGBitInputStream, InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
JPEGHuffmanInputStream(FileTiff.JPEGBitInputStream, InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
JPEGHuffmanInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
JPEGHuffmanInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
JpegImagesToMovie - Class in gov.nih.mipav.view.renderer.flythroughview: This program takes a list of JPEG image files and convert them into a QuickTime movie.
JpegImagesToMovie() - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie
JpegImagesToMovie.ImageDataSource - Class in gov.nih.mipav.view.renderer.flythroughview: A DataSource to read from a list of JPEG image files and turn that into a stream of JMF buffers.
JpegImagesToMovie.ImageSourceStream - Class in gov.nih.mipav.view.renderer.flythroughview: The source stream to go along with ImageDataSource.
JPEGInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
JPEGInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
JPEGInputStream(InputStream, int[][], FileSVS.JPEGHuffmanInputStream[], FileSVS.JPEGHuffmanInputStream[]) - Constructor for class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
JPEGInputStream(InputStream, int[][], FileTiff.JPEGHuffmanInputStream[], FileTiff.JPEGHuffmanInputStream[]) - Constructor for class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
JpegMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
JpegMetadataReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegMetadataReaderTest
JpegProcessingException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.JpegProcessingException
JpegProcessingException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.JpegProcessingException
JpegProcessingException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.JpegProcessingException
JpegReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegReader
JpegReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest
JpegSegmentData() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData
JpegSegmentDataTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest
JpegSegmentReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader
JpegSegmentReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest
JpegSegmentType(byte, boolean) - Constructor for enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
JpegSourceStream(int, int, int, File[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: Creates a new JpegSourceStream object.
jpegTables - Variable in class gov.nih.mipav.model.file.FileSVS
jpegTables - Variable in class gov.nih.mipav.model.file.FileTiff
JpegXrFile - Static variable in class gov.nih.mipav.model.file.FileCZI
JPG - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: Reserved for JPEG extensions.
JPG - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG12 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG12 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG8 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG8 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JPG9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
JPG9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
JpgFile - Static variable in class gov.nih.mipav.model.file.FileCZI
JPOOL_IMAGE - Static variable in class gov.nih.mipav.model.file.libjpeg
JPOOL_NUMPOOLS - Static variable in class gov.nih.mipav.model.file.libjpeg
JPOOL_PERMANENT - Static variable in class gov.nih.mipav.model.file.libjpeg
JPT_CFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
jpwl_correct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: activates the JPWL correction capabilities
jpwl_correct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: activates the JPWL correction capabilities
jpwl_exp_comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: expected number of components
jpwl_exp_comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: expected number of components
JPWL_EXPECTED_COMPONENTS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
JPWL_MAX_NO_PACKSPECS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Maximum number of tile parts expected by JPWL: increase at your will
JPWL_MAX_NO_TILESPECS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Expect this maximum number of tiles, to avoid some crashes
jpwl_max_tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: maximum number of tiles
jpwl_max_tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: maximum number of tiles
JPWL_MAXIMUM_TILES - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Expect this number of components, so you'll find better the first EPB
JPWLAssume - Variable in class gov.nih.mipav.model.file.FileJPEG2000: Assume a basic codestream structure, so you can resort better from uncorrected errors
JPWLCorrection - Variable in class gov.nih.mipav.model.file.FileJPEG2000
JPWLMaximumTiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000
JPWLNumComponents - Variable in class gov.nih.mipav.model.file.FileJPEG2000
JQUANT_TBL() - Constructor for class gov.nih.mipav.model.file.libjpeg.JQUANT_TBL
jround_up(int, int) - Method in class gov.nih.mipav.model.file.libjpeg
JScriptToolBar() - Constructor for class gov.nih.mipav.view.ViewToolBarBuilder.JScriptToolBar
JScrollMenu - Class in gov.nih.mipav.view
JScrollMenu() - Constructor for class gov.nih.mipav.view.JScrollMenu: Constructs a new JMenu with no text.
JScrollMenu(String) - Constructor for class gov.nih.mipav.view.JScrollMenu: Constructs a new JMenu with the supplied string as its text.
JScrollMenu(Action) - Constructor for class gov.nih.mipav.view.JScrollMenu: Constructs a menu whose properties are taken from the Action supplied.
JScrollPopupMenu - Class in gov.nih.mipav.view
JScrollPopupMenu() - Constructor for class gov.nih.mipav.view.JScrollPopupMenu
JScrollPopupMenu(String) - Constructor for class gov.nih.mipav.view.JScrollPopupMenu
JScrollPopupMenu.ScrollPopupMenuLayout - Class in gov.nih.mipav.view
JSON - Static variable in class gov.nih.mipav.model.file.FileUtility: extension .json
JSON - Static variable in class gov.nih.mipav.view.ViewImageFileFilter
jsonArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
jsp - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
jsp - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
JStereoWindow - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Class JStereoWindow:
JStereoWindow(SurfaceAttributes, Transform3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Constructs a JStereoWindow with a ModelTriangleMesh and Transform3D representing the model transformation for the surface.
JStereoWindow(Group, Group, Transform3D, SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Constructs a JStereoWindow with two nodes, one copy for each of the left and right eye views.
jtemCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Turns on the JTEM full version of Powell's algorithm on or off
jtemCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Turns on the JTEM full version of Powell's algorithm on or off
jtemCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
JTextFieldFilter(String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: Creates a new JTextFieldFilter object.
JTRC_16BIT_TABLES - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_ADOBE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_APP0 - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_APP14 - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_DAC - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_DHT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_DQT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_DRI - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_EMS_CLOSE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_EMS_OPEN - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_EOI - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_HUFFBITS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_JFIF - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_JFIF_BADTHUMBNAILSIZE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_JFIF_EXTENSION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_JFIF_THUMBNAIL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_MISC_MARKER - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_PARMLESS_MARKER - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_QUANT_3_NCOLORS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_QUANT_NCOLORS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_QUANT_SELECTED - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_QUANTVALS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_RECOVERY_ACTION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_RST - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SMOOTH_NOTIMPL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOF - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOF_COMPONENT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOI - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOS_COMPONENT - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_SOS_PARAMS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_TFILE_CLOSE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_TFILE_OPEN - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_THUMB_JPEG - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_THUMB_PALETTE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_THUMB_RGB - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_UNKNOWN_IDS - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_XMS_CLOSE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTRC_XMS_OPEN - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JTreeDICOM - Class in gov.nih.mipav.view
JTreeDICOM(DefaultMutableTreeNode) - Constructor for class gov.nih.mipav.view.JTreeDICOM
jtrj(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
jtrj(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
JTYPC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
jump - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
jump - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
jumpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
jumpLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
jumpText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
junctionNeighbours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
junctions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
justEllipse - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: When true, image mask is set to the initial ellipsoid approximation of the brain calculated from the volume's center of mass.
justification() - Method in annotation type gov.nih.mipav.model.file.MetadataExtractor.SuppressWarnings: An explanation of why it is valid to suppress the warning in a particular situation/context.
justified - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
justInit - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
justInitCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
justInitEllipsoidCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: When checked, justEllipse is set to true.
JVERSION - Static variable in class gov.nih.mipav.model.file.libjpeg
jvirt_barray_control() - Constructor for class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
jvirt_sarray_control() - Constructor for class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
JWRN_ADOBE_XFORM - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_ARITH_BAD_CODE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_BOGUS_PROGRESSION - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_EXTRANEOUS_DATA - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_HIT_MARKER - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_HUFF_BAD_CODE - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_JFIF_MAJOR - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_JPEG_EOF - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_MUST_RESYNC - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_NOT_SEQUENTIAL - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JWRN_TOO_MUCH_DATA - gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
JYNDD(int, double, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
JYZO(int, int, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

K

k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel
k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation
k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
k - Variable in class gov.nih.mipav.model.algorithms.curev
k - Variable in class gov.nih.mipav.model.algorithms.curfit
k - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
k - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: diffusitivity denominator.
k - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
k - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
k - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
k - Variable in class gov.nih.mipav.model.algorithms.ODE
k - Variable in class gov.nih.mipav.model.algorithms.ODEEP
k - Variable in class gov.nih.mipav.model.algorithms.splev
k - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
k - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
k - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
K - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
K - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
K - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
K - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
K - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions
K - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions
K - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
K - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
K - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
K - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
K_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
k_a_bound - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
k_function(LIBSVM.svm_node[], LIBSVM.svm_node[], LIBSVM.svm_parameter) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
k_function(LIBSVM.svm_node[], LIBSVM.svm_node[], LIBSVM.svm_parameter) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
k_function(svm_node[], svm_node[], svm_parameter) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
k_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
K_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
K_MEANS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
K_MEANS - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
k_neigh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
k_neigh - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
K_T - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
k_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
k1 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
k1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
k2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: diffusitivity denominator squared.
k2 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
k2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
kaiser(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
kAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: handle to algorithm *
kAnnotationLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kappa(double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
kBinaryLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kBlackChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kBlueChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kBrightFieldLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
kCenterImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
kCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
kCheckSubsample - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kComboBoxBSplineDegree - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kCyanChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kd_clear(KDTree.kdtree) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_create(int) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_free(KDTree.kdtree) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_insert(KDTree.kdtree, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_insert3(KDTree.kdtree, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_insert3f(KDTree.kdtree, float, float, float, double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_insertf(KDTree.kdtree, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest(KDTree.kdtree, double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_i(KDTree.kdnode, double[], KDTree.kdnode, double[], KDTree.kdhyperrect) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_range(KDTree.kdtree, double[], double) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_range_chebyshev(KDTree.kdtree, double[], double) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_range3(KDTree.kdtree, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_range3f(KDTree.kdtree, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest_rangef(KDTree.kdtree, float[], float) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest3(KDTree.kdtree, double, double, double) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearest3f(KDTree.kdtree, float, float, float) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_nearestf(KDTree.kdtree, float[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_end(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_free(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_item(KDTree.kdres, double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_item_data(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_item3(KDTree.kdres, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_item3f(KDTree.kdres, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_itemf(KDTree.kdres, float[]) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_next(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_rewind(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kd_res_size(KDTree.kdres) - Method in class gov.nih.mipav.model.algorithms.KDTree
kDarkFieldLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kDeepMaskLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kDefaultAppearance - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Original Appearance obj of the ImageComponent2D texture.
kdhyperrect() - Constructor for class gov.nih.mipav.model.algorithms.KDTree.kdhyperrect
kDialogSmooth - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Surface smooth control panel reference.
kDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
kDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Kernel dimension.
kDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
kDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Kernel dimension.
kDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
kDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
kDimXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Kernel dimension.
kDimXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Kernel dimension.
kDimXY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The erosion kernel x and y dims.
kDimZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
kDimZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
kDimZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The erosion kernel z dimension.
kdnode() - Constructor for class gov.nih.mipav.model.algorithms.KDTree.kdnode
kdres() - Constructor for class gov.nih.mipav.model.algorithms.KDTree.kdres
kdtree() - Constructor for class gov.nih.mipav.model.algorithms.KDTree.kdtree
KDTree - Class in gov.nih.mipav.model.algorithms: Original code Copyright (C) 2007-2011 John Tsiombikas Ported to Java by William Gandler Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1.
KDTree() - Constructor for class gov.nih.mipav.model.algorithms.KDTree
KDTree.kdhyperrect - Class in gov.nih.mipav.model.algorithms
KDTree.kdnode - Class in gov.nih.mipav.model.algorithms
KDTree.kdres - Class in gov.nih.mipav.model.algorithms
KDTree.kdtree - Class in gov.nih.mipav.model.algorithms
KDTree.res_node - Class in gov.nih.mipav.model.algorithms
kEBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
kEBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
keep(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
keep_inbag - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
keep_inbag - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
keepGoing - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: Boolean that tells the thread whether or not it should keep going.
keepGoing - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver.RunnerThread: DOCUMENT ME!
keepGoing() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver.RunnerThread: DOCUMENT ME!
keepSelected() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Method keep selected items from the file list.
kepButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
kEpsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
kEpsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
kEpsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kEpsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
kEpsilonLoose - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Kernel for both erosion and dilation.
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Kernel for both erosion and dilation.
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Kernel for both erosion and dilation.
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Kernel for both erosion and dilation.
kernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The erosion kernel.
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: mask to determine the region of pixels used in a median filter.
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: mask to determine the region of pixels used in the mode filter.
kernel - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
kernel - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Sep_FIR_filter
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
kernel - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
kernel(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
Kernel - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
Kernel - Interface in gov.nih.mipav.model
Kernel(int, LIBSVM.svm_node[][], LIBSVM.svm_parameter) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
Kernel(int, svm_node[][], svm_parameter) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
kernel_dilate_radius - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
kernel_function(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
kernel_function(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
kernel_list - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
kernel_method - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
kernel_name - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
kernel_size - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
kernel_size - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
KERNEL_SIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
KERNEL_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
kernel_string - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
kernel_threshold - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
kernel_type - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
kernel_type - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
kernel_type - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
kernel_type - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
kernel_type_table - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
kernel_type_table - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
kernelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
kernelBufferX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferX2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferX2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXXX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXXX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXXZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXXZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferXZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferXZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferY2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferY2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferYYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferYYY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferYYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferYYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferYZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferYZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelBufferZZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
kernelBufferZZZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
kernelCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
kernelCenter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: The index of the kernel center.
kernelCenter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: The index of the kernel center.
kernelClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
kernelDiameter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Required by the low pass filter, but is unused with these options.
kernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
kernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
kernelErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
kernelExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: The dimensions of the kernel.
KernelFactory - Interface in gov.nih.mipav.model
kernelfwhm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Width of deconvolution kernel used to sharpen the histogram.
kernelfwhm - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
kernelfwhm - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
kernelMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: mask to determine the region of pixels used in a median filter.
kernelMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: The kernel.
kernelMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: The kernel.
kernelNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Number of kernels used, more than 1 if adaptive filtering is used
kernelOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
kernelOrder0 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
kernelOrder0 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
kernelOrder1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
kernelOrder1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
kernelOrder2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
kernelOrder2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
kernelOrder3 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
kernelOrder3 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
kernelRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
kernelRegressionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
Kernels() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Kernels
kernelShape - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: user-selectable shape of the region for neighbor-selection.
kernelShape - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: user-selectable shape of the region for neighbor-selection.
kernelShape - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: user-selectable shape of the region for neighbor-selection.
kernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
kernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
kernelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: dimension of the kernel (ie., 5 = 5x5, 7 = 7x7, 9 = 9x9, etc.).
kernelSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
kernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
kernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: dimension of the kernel (ie., 5 = 5x5, 7 = 7x7, 9 = 9x9, etc.).
kernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: dimension of the kernel (ie., 5 = 5x5, 7 = 7x7, 9 = 9x9, etc.).
kernelSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel: 5 x 5 Sobel template found in Feature Extraction & Image Processing for Computer Vision Third Edition by Mark S.
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel
kernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
kernelSizeClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
kernelSizeErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
kernelSizeOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: kernel size (i.e. connectedness)
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: kernel size (i.e. connectedness)
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: kernel size (i.e. connectedness)
kernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: kernel size (i.e. connectedness)
kernelType - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
kernelType - Variable in class gov.nih.mipav.model.GaussianKernelFactory
kernelType() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType
kernelTypeErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Erosion kernel type.
kernelTypeErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Erosion kernel type.
kernelVal(double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
kernelVectorMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
kernelWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
kernXBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
kernYBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
kernZBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: The image data to convolve.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: The image data to convolve.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: DOCUMENT ME!
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Extents of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Dimensionality of the kernel.
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
kExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: DOCUMENT ME!
kExtents_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Extents of the 2D kernel.
kExtents_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Extents of the 2D kernel.
kExtents_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Extents of the 2D kernel.
kExtents_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Extents of the 3D kernel.
kExtents_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Extents of the 3D kernel.
kExtents_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Extents of the 3D kernel.
key - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair
key - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
key - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
key - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.fraud_pair_item
key - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqage key selects the local integration rule A gauss-kronrod pair is used with 7 - 15 points if key < 2 10 - 21 points if key = 2 15 - 31 points if key = 3 20 - 41 points if key = 4 25 - 51 points if key = 5 30 - 61 points if key > 5.
key - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqage key selects the local integration rule A gauss-kronrod pair is used with 7 - 15 points if key < 2 10 - 21 points if key = 2 15 - 31 points if key = 3 20 - 41 points if key = 4 25 - 51 points if key = 5 30 - 61 points if key > 5.
key - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ValuePair
key - Variable in class gov.nih.mipav.model.file.FileDicomKey: The dicom tag identifier in the format 'group,element'.
key - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo: The DICOM tag 'group,element' key indicating what tag this information pertains to.
key - Variable in class gov.nih.mipav.model.structures.jama.METIS.ikv_t
key - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier: The key (held here because it is properly formatted) of the DicomTag held.
key - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: the representative key of this object; must be unique.
key - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RootInfo
KEY_UNDEFINED - Static variable in class gov.nih.mipav.model.structures.DijkstraCostItem: Identifies an undefined key value.
keyArray - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
KeyComparator() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject.KeyComparator
keycontents - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey
keyExists(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: 2D slice images file chooser.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: key images variables.
keyImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: 2D slices image directory.
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
keyImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
keyImageMasksTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
keyImageMasksTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
keyImageMasksTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
keyImageMasksTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
keyImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: key images vector.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: image vector to hold the actual images.
keyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: image vector to hold the actual images.
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
keyImagesCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
keyImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
keyImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImagesN4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
keyImagesN4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
keyImagesN4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImagesN4Crop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
keyImagesN4Crop - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImagesN4Transform - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
keyImagesOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
keyImagesOrientationCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
keyImagesOrientationCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
keyImagesOrientationCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
keyImagesOrientationCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
keyImagesOrientationCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
keyImagesOrientationMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
keyImagesScaleIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
keyImagesTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: key images names vector.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: image vector to hold the image names.
keyImageVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: image vector to hold the image names.
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
keyImageVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
keyImageVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
keyImageVectorMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
keyImageVectorOrigImg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: key image VOIs vector.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: voi vector to hold the actual vois.
keyImageVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: voi vector to hold the actual vois.
keyImageVOIsTransformN4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: key image VOI names vector.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: voi vector to hold the VOI names.
keyImageVOIVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: voi vector to hold the VOI names.
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
keyImageVOIVector1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVOIVector2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVOIVector3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVOIVector4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
keyImageVOIVector5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
keyImageVOIVectorAAM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
keyImageVOIVectorAAM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
keyImageVOIVectorAAM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
keyImageVOIVectorAAM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
keyImageVOIVectorAAM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
keyImageVOIVectorMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
keyImageVOIVectorOrigImg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
keyList - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: The list of private keys in the image
keyList - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags
keyLog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
keyLog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Translation key, stored in "patient.key.doc".
Keypoint() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint
KeyPoint() - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
KeyPoint(double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
KeyPoint(Point2d, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
Keypoint_store() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
KeypointComparator() - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeypointComparator
keypoints1 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
keypoints2 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
keyPressdown - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: key pressed
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Handle the key pressed event.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Allow the user to use left and right keys to adjust the intensity bounds sliders, and update the region grow when the user hits enter from within the bounds text fields.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Handle the key pressed event.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Handle the key pressed event from the text field.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Invoked when a key has been pressed.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Unchanged.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Unchanged.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Unchanged.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: key pressed
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Handle the key pressed event from the text field.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Part of the KeyListener interface.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Handle the key pressed event from the text field.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: keyPressed callback.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: keyPressed callback.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer: keyPressed callback.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Part of the KeyListener interface.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Part of the KeyListener interface.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: keyReleased event method for KeyListener.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: keyPressed.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: keyPressed.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: ********************************************************************* **************************** Key Events *** **************************
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: keyPressed event method for KeyListener.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: keyPressed event method for KeyListener.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: keyPressed event method for KeyListener.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Unchanged.
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
keyPressed(KeyEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Pass the key event to the selected image frame (if one exists).
KeyPressedEvent(KeyEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: Creates new thread and sets up mouse event variables appropriately.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: key released
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Handle the key released event.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Placeholder required by KeyListener.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder required by KeyListener.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Handle the key released event.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Handle the key released event from the text field.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Invoked when a key has been released.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Unchanged.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Unchanged.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Unchanged.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: key released
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: keyReleased.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: keyReleased.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: keyReleased event method for KeyListener.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: keyReleased event method for KeyListener.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: keyReleased event method for KeyListener.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Unchanged.
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
keyReleased(KeyEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Pass the key event to the selected image frame (if one exists).
keys - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current Gaussian filter width
keys_res - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < number of detected keypoints.
keysDate - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
keySet() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Returns the set of parameter names.
keysVersion - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
keyToName - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: FileDicomTag to its name in the Dicom dictionary
keyToNameSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: FileDicomTag to its name in the Dicom dictionary
keyToValue - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: FileDicomTag to its value in the file
keyToValueSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: FileDicomTag to its value in the file
keyTyped - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: key typed
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Handle the key typed event.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Placeholder required by KeyListener.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Placeholder required by KeyListener.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Handle the key typed event.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: key typed
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Does nothing.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Invoked when a key has been typed.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: When the user enter the coarse and fine value, invoke this event to update fine or coarse sampling.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: OK or Cancel should be in focus and if the return key pressed the appropriate action takes place.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: key typed
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: keyTyped.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: keyTyped.
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
keyTyped(KeyEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Pass the key event to the selected image frame (if one exists).
KeyValuePair(AlgorithmNetworkSnake.tuple2i, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair
KeyValuePair(String, MetadataExtractor.StringValue) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair
keyword - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo: The tag keyword (no spaces).
keywords - Variable in class gov.nih.mipav.model.file.FileInfoCZI
KF_CACHE - gov.nih.mipav.model.algorithms.libdt.kf_mode
KF_COMPUTE_WITH_CACHE - gov.nih.mipav.model.algorithms.libdt.kf_mode: < cache filter matrices.
KF_COMPUTE_WITHOUT_CACHE - gov.nih.mipav.model.algorithms.libdt.kf_mode: < compute LL from cache.
kf_exponent - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
kf_lambda - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
kf_mode() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.kf_mode
kFactor - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
kfb - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
kFBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
kFBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
kFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: File to open the mask suface.
kFitting(double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
kGeneralImageLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kGeometryBranchPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
kGraph - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
kGreenChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
killEdge(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
KILOMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement kilometers.
KILOMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement kilometers.
KILOMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - kilometers.
kImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
kImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
kImageAref - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: References to the sculpt images.
kImageAref - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: References to the sculpt image.
kImageBref - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: DOCUMENT ME!
kImageBref - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: DOCUMENT ME!
kImpossibleValue - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
kind - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Tells whether confluent hypergeometric function is of first or second kind
kind - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
kindsString - Variable in class gov.nih.mipav.model.file.FileNRRD: Kind of information represented by the samples along each axis.
kInterleaved - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
kInterleaved - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
kInvalid - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
Kirby2CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Kirby2CostFunction
Kirby2Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Kirby2Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Kjump - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
Kjump - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
KjumpLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
KjumpText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
kl_bmd_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
KL_BMD_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
kl_fpa_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
KL_FPA_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
klapExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Dimensionality for the Laplacian kernel.
kLBFGSSecantConditionHessianUpdateTolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
kLuminosityLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kMagentaChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kMaskLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kMasterImageLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kMaxMu - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
kMaxRowBlocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
kMeansAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
KMETIS_DEFAULT_UFACTOR - Variable in class gov.nih.mipav.model.structures.jama.METIS
Kmin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
Kmin - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
KminLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
kMinMu - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
KminText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
kMovieLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kMVertex - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM.Polylines: Array of mesh points.
KNEE_PROBLEM - Variable in class gov.nih.mipav.model.algorithms.ODE
KNEE_PROBLEM - Variable in class gov.nih.mipav.model.algorithms.ODEEP
Knees_90_data_train_extraction - Class in gov.nih.mipav.view.renderer.WildMagic.Knees: This class converts the original knees MRI images into isotropic images. 1) Convert the VOIs into binary image masks. 2) Convert the original images into isotropic images 3) Convert the isotropic images from sagittal to axial; sagittal to coronal. 4) Along each orietation, generate the CED image in addition to MRI. 5) Save all the images (isotropic axial, sagittal, coronal images with corresponding binary masks).
Knees_90_data_train_extraction(Frame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Constructor.
kNoiseFactor - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
Knot(String) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Knot
KnotInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
knots - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
knotX - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
knotX - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
knotX - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
knotY - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
knotY - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
knowDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
known - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_node_t
kNumResiduals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
kNumResiduals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
kNumResiduals - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
kNumResiduals - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction4
kNumResiduals - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
kNumTrials - Static variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kod - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
kod - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
KodakMakernoteDescriptor(MetadataExtractor.KodakMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDescriptor
KodakMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory
kodkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
kodkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
kodkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
kodkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2: DOCUMENT ME!
koff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd: DOCUMENT ME!
kold - Variable in class gov.nih.mipav.model.algorithms.ODE
kold - Variable in class gov.nih.mipav.model.algorithms.ODEEP
kolmogi(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
KOLMOGI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
kolmogorov(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
KOLMOGOROV - Static variable in class gov.nih.mipav.model.algorithms.Cephes
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2: DOCUMENT ME!
kon - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd: DOCUMENT ME!
konsnt - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Controls the diffusion rate.
konst - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: DOCUMENT ME!
kOrigins_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Origins of the 2D kernel.
kOrigins_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Origins of the 2D kernel.
kOrigins_2D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Origins of the 2D kernel.
kOrigins_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Origins of the 3D kernel.
kOrigins_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Origins of the 3D kernel.
kOrigins_3D - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Origins of the 3D kernel.
KOWALIK_AND_OSBORNE - Variable in class gov.nih.mipav.model.algorithms.Lmmin
KOWALIK_AND_OSBORNE - Variable in class gov.nih.mipav.model.algorithms.LsqFit
KOWALIK_AND_OSBORNE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
KOWALIK_AND_OSBORNE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
KowalikAndOsborneFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.KowalikAndOsborneFunction
kp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
kp_src - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tps
kPanelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Button panel.
kPanelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Button panel.
kPickDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: PickDirection, the direction of the PickShape.
kPoly - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
kPolyNode - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
kPVertex - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM.Polylines: Array of plane points.
kRadius - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Width of the derivative buffer.
kRandomSeed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kRedChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
kRGBChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
Kron(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Forms the Kronecker tensor product of two matrices.
kross(Vector2f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Returns Cross((x,y,0),(V.x,V.y,0)) = x*V.y - y*V.x.
kRowBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
kRowBlockSize - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
kRowMajor - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
Kruskal - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Kruskal - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
KruskalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
kScrollPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
kShape - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Shape object of the volume renderer.
ksize - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D
ksize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Neighbor window size
kStringDimension - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME
kSucceeds - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
kSVertex - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM.Polylines: Array of sphere points.
KText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
kTextBSplineNumControlPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kTextConvergenceLimit - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kTextGradientDescentMinimizeMaxSteps - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kTextGradientDescentMinimizeStepSize - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kTextMaxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
kTolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseValidSubspaceBasis
kTolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kTolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver
kTolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
kToleranceLoose - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipseCorrectGaussNewtonStep
kToleranceLoose - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient
kToleranceLoose - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient
ktrans - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel
ktransDivVe - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
ktransTotal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
kUninitialized - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kUnitsOther - Static variable in class gov.nih.mipav.model.file.FileLIFF
kurtosis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
kurtosisB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
kurtosisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
kurtosisG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
kurtosisR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
kuwaharaAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: DOCUMENT ME!
kValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: In the paper "Generalized gradient vector flow external forces for active contours" by Chenyang Xu and Jerry Prince values of 0.05, 0.15, and 0.2 were used for k.
kValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Controls the diffusion rate.
kValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: In the paper "Generalized gradient vector flow external forces for active contours" by Chenyang Xu and Jerry Prince values of 0.05, 0.15, and 0.2 were used for k.
kValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Controls the diffusion rate.
kValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
kValue - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
kValue - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
kVertexIds - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
kWorldInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
kx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
ky - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
kYellowChannelLayer - Static variable in class gov.nih.mipav.model.file.FileLIFF
KyoceraMakernoteDescriptor(MetadataExtractor.KyoceraMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDescriptor
KyoceraMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory
kz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

L

l - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
l - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
l - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
l - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
l - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_problem
l - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem: the number of training data
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_problem
l - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
L - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
L - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
L - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
L - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
L - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
L - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Size of the arrays
L - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
L - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
L - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
L - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
L - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
L - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
L - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
L - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
L - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
L_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
L_BFGS_B - Class in gov.nih.mipav.model.algorithms: This is a port of the FORTRAN 77 L-BFGS-B code to Java L-BFGS-B is released under the “New BSD License” (aka “Modified BSD License” or “3-clause license”) =========== L-BFGS-B (version 3.0.
L_BFGS_B() - Constructor for class gov.nih.mipav.model.algorithms.L_BFGS_B
L_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
L1_CACHE_BYTES - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
l1_conjugate_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
l1_dca_update - Variable in class gov.nih.mipav.model.algorithms.SVM
l1_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
l1_loss_derivative - Variable in class gov.nih.mipav.model.algorithms.SVM
L1a - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
L1Distance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
L1Distance - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
L1DistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
L1R_L2LOSS_SVC - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L1-regularized L2-loss support vector classification
L1R_LR - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L1-regularized logistic regression
L1s - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
l2_conjugate_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
l2_dca_update - Variable in class gov.nih.mipav.model.algorithms.SVM
l2_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
l2_loss_derivative - Variable in class gov.nih.mipav.model.algorithms.SVM
l2dist(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
L2R_L1LOSS_SVC_DUAL - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L2-regularized L1-loss support vector classification (dual) (fka L1LOSS_SVM_DUAL)
L2R_L2_SvcFunction - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
L2R_L2_SvcFunction(Problem, double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
L2R_L2LOSS_SVC - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L2-regularized L2-loss support vector classification (primal) (fka L2LOSS_SVM)
L2R_L2LOSS_SVC_DUAL - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L2-regularized L2-loss support vector classification (dual) (fka L2LOSS_SVM_DUAL)
L2R_LR - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: L2-regularized logistic regression (fka L2_LR)
L2R_LrFunction - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
L2R_LrFunction(Problem, double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
L3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Level 3
L5 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Level 5
L7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Level 7
label - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
label - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.REGION
label - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
label - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
label - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
label - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
label - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter: The label/name of the parameter.
label - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
label - Variable in class gov.nih.mipav.model.structures.VOIBase: Label (Name) for this member of the VOI.
label - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexItem: DOCUMENT ME!
label - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: labels for the painted objects.
label - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexItem: DOCUMENT ME!
label - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear.GroupClassesReturn
label - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model: label of each class
label - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
label - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes: DOCUMENT ME!
label1 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
label1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Label for slider, "1".
label1 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label100 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Label for slider, "100".
label1String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
label2 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
label2 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label2OriginalExtentX - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Label for displaying the original extent X
label2OriginalExtentY - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Label for displaying the original extent Y
label2OriginalExtentZ - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Label for displaying the original extent Z
label2String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
label3 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label3D - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: difference between x,y resolutions (in plane) and z resolution (between planes).
label4 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label5 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label5 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
label50 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Label for slider, "50".
label6 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label7 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
label8 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
labelA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static cliiping slider labels.
labela0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
labela1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela3 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela4 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela5 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labela6 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labelAdjustedSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
labelAEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping slider labels.
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelAMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping slider labels.
labelAmpFact - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
labelAnimationFrame - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
labelAnimationFrame - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
labelAStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping slider labels.
labelAxialVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelAxis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
labelB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
labelBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
labelBloodIntrinsicRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelBloodIntrinsicRelaxivityRate2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
labelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
labelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
labelBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
labelClassicStep - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelClassNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
labelCoarse - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelCoarse - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelCoarseDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelCoarseDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelCoarsenessThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
labelColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelColumnNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
labelComponents - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelConnectType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
labelContrastRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: DOCUMENT ME!
labelControlPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
labelCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelCoronalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
labelCoronalVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
labelCorrected - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
labelCorrected - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelCorrected - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelCorrected - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
labelCorrected - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
labelCost - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
labelCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
labelCross - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
labelCSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
labelCurrent - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
labelCurrentColoc - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: private JLabel labelLineFunction;.
labelCurrentIntensity1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
labelCurrentIntensity2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
labelDegree - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
labelDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
labelDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
labelDeltaT - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelDestinationMean - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
labelDiffusion - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelDigitNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelDilation - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the cell-radius dilation (multiple of cell expected radius).
labelDimensionality - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
labelDimX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelDimY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelDimZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelDOF - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
labelDtheta - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelEc - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
labelEdgeAttract - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelEdgeThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
labelEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
labelEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
labelEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
labelEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelEndTol - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelEndVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelEndVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelEndVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelEndVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelEndVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelEndVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelEnhancedThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
labelEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelErrorThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
labelExpFuzzifier - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
labelExpo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
labelExpo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
labelExpo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
labelF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
labelF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
labelF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
labelF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
labelF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
labelField - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
labelFine - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelFine - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelFineDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelFineDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelFirstOctave - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelFirstSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelFirstSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelFirstTimePeriod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelFittingLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
labelFlipAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelFramesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
labelFramesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
labelFU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
labelFU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelFV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
labelFV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
labelGamma - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelGamma - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelGaussianWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
labelGaussX - Variable in class gov.nih.mipav.view.components.JPanelSigmas
labelGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
labelGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
labelGaussY - Variable in class gov.nih.mipav.view.components.JPanelSigmas
labelGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
labelGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
labelGaussZ - Variable in class gov.nih.mipav.view.components.JPanelSigmas: label
labelGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
labelGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
labelGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
labelgmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelgmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
labelgmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelgmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
labelGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Save group directory.
labelGuided - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
labelHammingDistanceThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
labelHardCoefficient - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelHardSearchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelHardSimilar - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelHardStep - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelHardTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelHematocrit - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelHighGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelHighTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelHistogramBins - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
labelHistogramThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
labelICNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Image label.
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: The registered image
labelImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
labelImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Target image directory.
labelImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Target image directory.
labelImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Target image directory.
labelImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Target image directory.
labelImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Target image directory.
labelImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Target image directory.
labelImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Target image directory.
labelImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: GRE image directory.
labelImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: GRE image directory.
labelImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: GRE image directory.
labelImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: GRE image directory.
labelImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: GRE image directory.
labelImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Target image directory.
labelImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Target image directory.
labelImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Target image directory.
labelImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Target image directory.
labelImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Target image directory.
labelIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
labelIndexComparator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexComparator
labelIndexComparator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexComparator
labelIndexItem(short, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation.labelIndexItem: Creates a new labelIndexItem object.
labelIndexItem(short, int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogPowerWatershed.labelIndexItem: Creates a new labelIndexItem object.
labelIniter - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelIniter - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelInitial0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelInitial1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelInitial2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelInitialGlobal - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelInitialKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIntensity - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light intensity label.
labelIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light intensity label.
labelIntensityBegin - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light intensity label begin.
labelIntensityBegin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light intensity label begin.
labelIntensityEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light intensity label end.
labelIntensityEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light intensity label end.
labelIntensityMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light intensity label middle.
labelIntensityMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light intensity label middle.
labelInternal - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
labelInterp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
labelInterp2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
labelInterpNPts - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
labelInterpolation - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
labelInterpType - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
labelIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
labelIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
labelIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
labelIterations2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIterativeGlobal - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIterativeGlobal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIterativeKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelIters - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
labelJacobi - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelk - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
labelK - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
labelK - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
labelK - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
labelKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
labelKernelClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelKernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
labelKernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
labelKernelErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
labelKernelOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
labelKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
labelKernelSizeClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelKernelSizeErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
labelKernelSizeOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: 2D Slices key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Key image related variables.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: key image directory.
labelKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
labelKSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
labelLambda - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelLambda - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelLastSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelLastTimePeriod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
labelLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelLinearCorrelation - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
labelLowGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelLowTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelm - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
labelMagnification - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelMaskSD - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
labelMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
labelMatchingThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
labelMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
labelMax - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
labelMax - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
labelMaxArea - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
labelMaxB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelMaxConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMaxConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMaxConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMaxConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMaxConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMaxConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMaxDiff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
labelMaxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
labelMaxG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelMaximumSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
labelMaxiter - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
labelMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
labelMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
labelMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelMaxIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelMaxR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelmaxRz - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelmaxTx - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelmaxTy - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelMaxVariation - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
labelMed - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
labelMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
labelMidVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelMidVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelMidVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelMidVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelMidVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelMidVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
labelMin - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
labelMin - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
labelMinArea - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
labelMinB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelMinConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMinConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMinConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMinConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMinConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMinConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelMinDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
labelMinDiversity - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
labelMinG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelMinPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
labelMinR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
labelminRz - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelminTx - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelminTy - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
labelMinwave - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: key image directory.
labelModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: key image directory.
labelModeX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelModeY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelModeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelMp - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelMult - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
labelMult - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelmw1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
labelmw2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
labelName - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelName - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
labelName - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
labelNameX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelNameY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelNameZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelNClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
labelNClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
labelNClasses - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelNFirst - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelNiter - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
labelNIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
labelNIterClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
labelNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
labelNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
labelNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
labelNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
labelNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
labelNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
labelNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
labelNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
labelNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
labelNIterErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
labelNIterErode - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelNIterOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
labelNLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelNOctaves - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
labelNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
labelNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
labelNorm - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
labelNormThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelNPyramid - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
labelNumberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
labelNwarps - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelO2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
labelO3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
labelOctaves - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
labelOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
labelOffsetDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
labelOffsetDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelOperator - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
labelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
labelOrderX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelOrderY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelOrderZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelOrient - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelOrientations - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
labelOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelOutiter - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelOutiter - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelOutput - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelP1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelP2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelPaddedExtentX - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Label for displaying the padded extent X
labelPaddedExtentY - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: Label for displaying the padded extent Y
labelPaddedExtentZ - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: label for displaying the padded extent Z
labelParamsToFit - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Use serialVersionUID for interoperability.
labelParamsToFit - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2: Use serialVersionUID for interoperability.
labelPeakThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelPlyFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
labelPlyFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
labelPotential - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
labelPrune - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
labelPValue - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
labelR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
labelRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the estimated cell-radius (pixels).
labelReceiver - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
labelRef - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelReference - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
labelReferenceSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
labelRegister - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelRegIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelRegLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelRegType - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelResampling - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the uniform-resampling constraint contribution:.
labelRescaling - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
labelRescaling - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
labelResType - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
labelResX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelResY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelResZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelRotateDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelRotateDegrees - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelRotateRange - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelRotateRange - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelRotateRangeTo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
labelRotateRangeTo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
labelRowNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
labelRs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
labelRs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
labelRs - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
labelRs - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
labelRs - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
labelRx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelRy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelRz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
labels - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
labels - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
labels - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
labels - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
labels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: speed control slider labels.
LABELS - Static variable in class gov.nih.mipav.model.file.FileSVS
LABELS - Static variable in class gov.nih.mipav.model.file.FileTiff
labelSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelSagittalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: saved 2D slices dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Save features directory.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: saved 2D slices atlas dir.
labelSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: saved 2D slices atlas dir.
labelScale - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelScale - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelse - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
labelSearchWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
labelSegmentNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
labelsForTicks(double[]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson: Uses either decimal or scientific notation for the labels and strips unnecessary trailing zeros.
labelsGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
labelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the shape constraint contribution:.
labelShape - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
labelShininess - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light shinness label.
labelShininessBegin - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Shinness label begin.
labelShininessEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Shinness label end.
labelShininessMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Shinness lable middle.
labelShrink - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelShrink - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
labelSigmaon - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelSigmaX - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
labelSigmaY - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
labelSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
labelSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
labelSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
labelSignal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelSimilarityWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
labelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the size constraint contribution:.
labelSizeX - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
labelSizeY - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
labelSizeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
labelSKx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelSKy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelSKz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
labelSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelSmoothing - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelSoft - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
labelSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
labelsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
labelsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelSrcThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelSSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
labelsTable - Variable in class gov.nih.mipav.view.JPanelHistogram
labelsTable - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTable - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTable - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Histogram dialog slider labels of the imageA, B and GM imageA, B.
labelsTable - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Histogram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Histogram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Histogram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelsTableGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Historgram dialog slider labels of the imageA, B and GM imageA, B.
labelStart - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
labelStartLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelStartNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
labelStartVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelStartVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelStartVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelStartVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelStartVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
labelStartVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
labelStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static cliiping slider labels.
labelStaticEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping plane labels.
labelStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static cliiping slider labels.
labelStaticInvEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static inverse clipping plane labels.
labelStaticInvMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static inverse clipping plane labels.
labelStaticInvStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static inverse clipping plane labels.
labelStaticMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping plane labels.
labelStaticStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping plane labels.
labelSTDDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
labelSteeringStep - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelStep - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
LabelStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
labelString - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: Axis names such as X, Y, or Z
labelStructureType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
labelStructuring - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
labelSU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
labelSU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelSV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
labelSV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelSVMModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
labelSx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelSy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelSz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels next to sliders.
labelT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels next to sliders.
labelTable - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
labelTable - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
labelTable - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
labelTable - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
labelTable2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
labelTable2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
LabelTableStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
labelTarget - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
labelTau - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelTemplate - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
labelTestIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
labelText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
labelText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.GlyphLabel
labelText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel
labelTheta - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
labelTheta - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelTheta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelTheta1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelTheta2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
labelThres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: DOCUMENT ME!
labelThres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
labelThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
labelThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
labelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
labelTimeBetweenShots - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelTissueIntrinsicRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelTissueIntrinsicRelaxivityRate2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
labelTol - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelTol - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelTol - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
labelTransformDimX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTransformDimY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTransformDimZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTransformResX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTransformResY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTransformResZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
labelTranslateRangeX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
labelTranslateRangeY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
labelTranslateRangeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
labelTx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelTy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelType - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
labelType - Variable in class gov.nih.mipav.model.file.FilePARREC
labelTypeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
labelTypePos - Variable in class gov.nih.mipav.model.file.FilePARREC
labelTz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
labelUpscale - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
labelVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
labelVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
labelVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
labelVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
labelVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
labelVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
labelValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: Used for single value, real part of complex, and red part of color
labelValueB - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: Used for blue part of color
labelValueI - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: Used for imaginary part of complex and green part of color
labelVelocity - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: user-interface for setting the initial cell velocity:.
labelVisible - Variable in class gov.nih.mipav.view.graphVisualization.MipavEdgeRenderer: Indicates whether the label of the edge has to be shown or not.
labelVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
labelVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
labelVolumeLength - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
labelWarps - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
labelWeightDiff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
labelWhichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
labelWhichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
labelWhichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
labelWienerSearchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelWienerSimilar - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelWienerStep - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelWienerTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
labelWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
labelWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
labelWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
labelWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
labelWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
labelWindowSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
labelX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: X, Y, Z labels inside the rotation panel.
labelX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels next to sliders.
labelX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels next to sliders.
labelX1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelX1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Labels beneath sliders.
labelX1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelXAlphaButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
labelXEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Slider tick labels.
labelXEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelXEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Labels beneath sliders.
labelXEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelXEndInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X clipping slider labels.
labelXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelXMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Slider tick labels.
labelXMid - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelXMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Labels beneath sliders.
labelXMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelXMidInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X clipping slider labels.
labelXNumButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
labelXStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Slider tick labels.
labelXStartInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X clipping slider labels.
labelXTal - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Label the Talairach position x value in the image volume.
labelY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: X, Y, Z labels inside the rotation panel.
labelY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels next to sliders.
labelY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels next to sliders.
labelY1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelY1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelYEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y clipping slider labels.
labelYEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelYEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelYEndInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y inverse clipping slider labels.
labelYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelYMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y clipping slider labels.
labelYMid - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelYMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelYMidInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y inverse clipping slider labels.
labelYStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y clipping slider labels.
labelYStartInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Y inverse clipping slider labels.
labelYTal - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Label the Talairach position y value in the image volume.
labelZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: X, Y, Z labels inside the rotation panel.
labelZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels next to sliders.
labelZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Label that says "Z (1-100)".
labelZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels next to sliders.
labelZ1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelZ1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelZEnd - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelZEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelZEndInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
labelZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
labelZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
labelZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
labelZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Sliders labels.
labelZMid - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZMid - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Labels beneath sliders.
labelZMid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Labels beneath sliders.
labelZMidInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZStart - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZStartInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Z clipping slider labels.
labelZTal - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Label the Talairach position z value in the image volume.
lambda - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
lambda - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
lambda - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The regularization for the elongation parameter
lambda - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Contrast multiplied by the maximum gradient.
lambda - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
lambda - Static variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
lambda - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest
lambda - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Bias feature multiplier.
lambda - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
lambda - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Regularization for the elongation parameter
lambda - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
lambda - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: positive scale factor.
lambda - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
lambda_decrease - Variable in class gov.nih.mipav.model.algorithms.LsqFit
lambda_increase - Variable in class gov.nih.mipav.model.algorithms.LsqFit
lambda3D_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
lambda3D_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
lambdaEm - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
lambdaEm - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
lambdaEx - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
lambdaEx - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
Lambdaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
lambdaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Text field for getting lambda for smoothing.
lambdaU - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
lambdaV - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
lamf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
lamnmx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
lamst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
lanczos(double, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
Lanczos1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos1CostFunction
Lanczos1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Lanczos1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
LANCZOS2 - gov.nih.mipav.model.algorithms.SIFT3D.interp_type
Lanczos2CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos2CostFunction
Lanczos2Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Lanczos2Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Lanczos3CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Lanczos3CostFunction
Lanczos3Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Lanczos3Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
LandData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.LandData
landmarkCounter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
landmarkCounter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
Landmarks - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
landmarkUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 368 - 32 bytes.
LAPACK - gov.nih.mipav.model.algorithms.CeresSolver.DenseLinearAlgebraLibraryType
lapData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Storage location of the Laplacian data.
laplace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
laplace(double) - Method in class gov.nih.mipav.model.algorithms.FitLaplace: Gaussian evaluated at a point with given parameters
LAPLACE_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
LAPLACE_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
laplaceFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
LAPLACIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
LAPLACIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
laplacian_pyramid(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
laplacian25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: 2D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
laplacian3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: 3D Implementation: Create the OpenCL Buffers, Kernel, and CommandQueue.
laplacian4D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Calls laplacian3D for each volume in the time series image.
laplacianAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
laplacianAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
LaplacianMatrixFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
LaplacianMatrixFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
LaplacianMatrixIteration(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
LaplacianProjectionFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
LaplacianProjectionFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction
laplacians - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
laplacianScaleScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature: < orientation score.
laplacianSep25D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian
laplacianSep25DSlices() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian
laplacianSep3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian
laplacianSepAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
lapPatch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
lapPeakThreshold - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < edge threshold.
large - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
large - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
large_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
large_list - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr
large_pool_struct() - Constructor for class gov.nih.mipav.model.file.libjpeg.large_pool_struct
large_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
largeCircularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
LargeDiag_HWPM - gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t
LargeDiag_MC64 - gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t
largest_input_value(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
largestContourDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
largestDistanceDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: Largest line segment contained entirely within a 3D VOI
largestImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
largestImagePixelValue - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
largestPole - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace: Don't include a time == 0.
largestPole - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: largest pole of Laplace space function (default zero) Note that InverseLaplace may give incorrect results if the default value of largestPole is used.
largestSliceDistanceDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: Largest line segment contained entirely within a slice of a VOI
laser - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: Elements has one of the following...laser, filament, or arc.
Laser(String, String, Integer, Boolean, Boolean, String, Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser: Creates a new Laser object.
LASER_ENTRY_ACQUIRE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LASER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LASER_ENTRY_POWER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LASER_SURFACE_SCAN - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality laser surface scan.
LASER_SURFACE_SCAN - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality laser surface scan.
last - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
last - Variable in class gov.nih.mipav.model.algorithms.Integration2: The number of subintervals actually called in the subdivision process.
last - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The number of subintervals actually called in the subdivision process.
last - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
last - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
last_addon_message - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
last_batch_size - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
last_col_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
last_dc_val - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
last_dc_val - Variable in class gov.nih.mipav.model.file.libjpeg.savable_state
last_event_time_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
last_flag - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
last_flag - Variable in class gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver
last_jpeg_message - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
last_row_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
last_rowsperchunk - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr
last_seed - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
lastBitFlag() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
LastBitFlag() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
lastBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
lastBounds() - Method in class gov.nih.mipav.view.Rubberband: Gets the last bounds of the rubberband.
lastCol - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
lastElement() - Method in class gov.nih.mipav.model.structures.IntVector: Gets last element of array without removing it.
lastGridSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
lastIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
lastMax - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: lastMin and lastMax store the last min and max values for an image. these are used as a trigger for resetting the transfer function.
lastMax - Variable in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
lastMin - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: lastMin and lastMax store the last min and max values for an image. these are used as a trigger for resetting the transfer function.
lastModifiedBy - Variable in class gov.nih.mipav.model.file.FileInfoZVI
lastMouseClickNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
lastMouseEvent - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
lastMouseX - Variable in class gov.nih.mipav.view.ViewJComponentBase: used by the repaintPaintBrushCursorFast method
lastMouseY - Variable in class gov.nih.mipav.view.ViewJComponentBase: used by the repaintPaintBrushCursorFast method
LastMoveDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
LastMoveDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
LastMoveDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
LastMoveTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
LastMoveTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
LastMoveTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
lastName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
lastName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter
lastName - Variable in class gov.nih.mipav.model.file.FileInfoOME.Person
lastName(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Finds the last name of the current patient.
lastNameString - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
lastNameString - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
lastNameString - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
lastNameStringX - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
lastNameStringY - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
lastNameStringZ - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
lastNumericalSequenceBegin(String) - Static method in class gov.nih.mipav.model.file.FilenameSorter: Alternative to lastNumericalSequenceBegin(String, int), this method should be called if you don't already have the index of the end of the last numerical sequence in the String parameter.
lastNumericalSequenceBegin(String, int) - Static method in class gov.nih.mipav.model.file.FilenameSorter: The purpose of this method is to find the index location of a String that is the beginning of the last numerical sequence.
lastNumericalSequenceEnd(String) - Static method in class gov.nih.mipav.model.file.FilenameSorter: The purpose of this method is to find the index location of a String that is the end of the last numerical sequence.
lastOctave - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Index of the fisrt octave
lastPageButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lastPageMenuItem - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lastPoint - Variable in class gov.nih.mipav.model.structures.VOIBase: Keeps track of the last near point value (for keyboard moving of individual pts.
lastPt - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
lastRow - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
lastRowBFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
lastRunTimeMillis - Variable in class gov.nih.mipav.view.MaximumLinesDocumentListener
lastSearchElement - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
lastSearchGroup - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
lastSearchIndex - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
lastSelectedSlice - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
lastSelectedSlice - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lastSliceBeforeBleach - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
lastSliceBeforeBleach - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
lastStackFlag - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
lastStackFlag - Variable in class gov.nih.mipav.view.ViewUserInterface: Indicates the user's last choice of whether to open images as multi-file (stack) or single file in the file open dialog.
lastState - Variable in class gov.nih.mipav.view.ViewJFrameBase: Save if last state was iconified or normal.
lastState - Variable in class gov.nih.mipav.view.ViewJFrameMessage: Indicates last state of frame - NORMAL or ICONIFIED.
lastUnits - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
lastWinRegionSlice - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Last slice the image was at when win region was ON. its necessary because otherwise, a new cleanImageB would have to be created upon every repaint. should be initialized to a negative number
lastx - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
lastX - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
lasty - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
lastY - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
lastZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
latch_quant_tables(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
lateralities - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
laterality - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
latestVolumePt - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
LATIN_CAPITAL_A - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
LATIN_CAPITAL_G - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
lattice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
lattice - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
latticeChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeListener: LatticeListener are updated whenever the lattice changes in the LatticeModel.
latticeChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
latticeClipAxes - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
latticeClipBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
latticeClipExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
latticeClipPos - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
latticeContours - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
latticeExtentsLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
latticeGrid - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeInterpolationInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
LatticeListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
latticeListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
LatticeModel - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting: Supports the worm-straightening algorithms that use a 3D lattice as the basis of the straightening process.
LatticeModel(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Creates a new LatticeModel
LatticeModel(ModelImage, VOIVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Creats a new LatticeModel with the given input lattice.
LatticeModel.AnnotationSplineControlPts - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
latticePosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
latticepositionMarker - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeSegment - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
latticeSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
latticeStraight - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
lattry - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Variables used for restart information.
lattry - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Variables used for restart information.
launchFileChooser - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
LAX - gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType
laxExt - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
lay_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Temporary values for Tile parts, initialised in pi_create_encode
layE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: End value, initialised in pi_initialise_encode
layers - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
layerString - Variable in class gov.nih.mipav.model.file.FileInfoLIFF: Use serialVersionUID for interoperability.
layno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: layer that identify the packet
layno0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num start,Precinct num start, Precinct num end
layno1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num end,Resolution num end, Component num end, given by POC
layout - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
layout - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
layoutContainer(Container) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
layoutPanel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
layS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start value, initialised in pi_initialise_encode
lbeta(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
LBETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
LBFGS - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
LBFGS(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LBFGS
lblOrigDim - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
lblRotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
lblRotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
lblTranslation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
lblTranslations - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
lcAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: DOCUMENT ME!
LCOPY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
LCS_CALIBRATED_RGB - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType: 0 = Calibrated RGB
LCS_GM_ABS_COLORIMETRIC - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent: Match, Absolute Colorimetric
LCS_GM_BUSINESS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent: Graphic, Saturation
LCS_GM_GRAPHICS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent: Proof, Relative Colorimetric
LCS_GM_IMAGES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent: Picture, Perceptual
LCS_sRGB - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType: "sRGB" = sRGB Color Space
LCS_WINDOWS_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType: "Win " = System Default Color Space, sRGB
lcustx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
lcusty_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
lda - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.DNformat
ldb - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
LDE(double[], double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
LDERES(String, char, int, int, double[][], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
ldn - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform
le - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
le - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
le - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations2
le - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations3
le - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
le - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
le(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is less than or equal to another DoubleDouble value.
Le(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise less than or equal.
Le(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Less Than or Equal - compares a double and a vector.
Le(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise less than or equal.
Le(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Less Than or Equal - compares a vector and a vector.
le2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
leaderEmail - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leaderExperimenterRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leaderFirstName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leaderInstitution - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leaderIsPerson - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leaderLastName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group
leadString - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
LEAF_ACQUISITION - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_IMAGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_IMAGE_MAX - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_IMAGE_MIN - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_PATIENT - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_PROCESSING - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_STUDY - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_T_SPACE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_X_SPACE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_Y_SPACE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
LEAF_Z_SPACE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
learn_linear_SVM_on_double_data() - Method in class gov.nih.mipav.model.algorithms.SVM
learnBaseDTM() - Method in class gov.nih.mipav.model.algorithms.libdt
learnBaseDTMBoS() - Method in class gov.nih.mipav.model.algorithms.libdt
learnDTM(libdt.VidSegm, String, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
learnFromFailure() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
learnFromFailure() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
learningLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
learningRate - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
learningRate - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
learningTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
learnLeastSquares(libdt.Dytex, Vector<libdt.Mat>) - Method in class gov.nih.mipav.model.algorithms.libdt
learnTagDTM() - Method in class gov.nih.mipav.model.algorithms.libdt
learnWithSplitting(libdt.DytexMix, Vector<libdt.Mat[]>, libdt.EMOptions) - Method in class gov.nih.mipav.model.algorithms.libdt
LEAST_SQUARES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
LEAST_SQUARES_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_WGT_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
LEAST_SQUARES_SMOOTHED_WGT_COLOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
leastSquares() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: This code comes from matchBtoA() and buildXfrm(double p1[],double p2[], Matrix R) in AlgorithmRegLeastSquares.
leastSquares() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: This code comes from matchBtoA() and buildXfrm(double p1[],double p2[], Matrix R) in AlgorithmRegLeastSquares.
leastSquares(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquares(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquares(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquares(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
leastSquaresCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
leastSquaresColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresSmoothedColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresSmoothedColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresSmoothedColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function.
leastSquaresSmoothedColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function.
leastSquaresSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function with weighting.
leastSquaresSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function with weighting.
leastSquaresSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function with weighting.
leastSquaresSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function with weighting.
leastSquaresSmoothedWgtColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function with weighting.
leastSquaresSmoothedWgtColor(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function with weighting.
leastSquaresSmoothedWgtColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Least squares cost function with weighting.
leastSquaresSmoothedWgtColor(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Least squares cost function with weighting.
leaves() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
LED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
LEFileReader - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: Created by IntelliJ IDEA.
LEFileReader(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: Instantiates a new lE file reader.
LEFileWriter - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork: The Class LEFileWriter.
LEFileWriter(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter: Instantiates a new lE file writer.
left - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
left - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdnode
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
left - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
left - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
left - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
left - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode: Node to the left in the tree.
left - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
left - Variable in class gov.nih.mipav.view.RubberbandLivewire.TreeNode: Node to the left in the tree.
Left() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
LEFT - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
LEFT - Static variable in class gov.nih.mipav.model.structures.VOIBase: The left arrow key.
LEFT - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
LEFT_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Left bounding edge of the canvas in world coordinates.
LEFT_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
LEFT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
LEFT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
LEFT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
LEFT_MIDDLE - Static variable in class gov.nih.mipav.model.structures.VOIBase
LEFT_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Left reference point.
leftButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
leftButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
LeftButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.LeftButton: Creates new button with correct icon and given tool tip.
LeftButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.LeftButton: Creates new button with correct icon and given tool tip.
LeftButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.LeftButton: Creates new button with correct icon and given tool tip.
leftCenter - Variable in class gov.nih.mipav.model.file.FileInfoMGH
leftContour - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
leftDown - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
leftDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Left panel mouse button down.
leftDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
leftDownButtonEmpty - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Left panel empty button.
leftFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
leftHandRuleCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: DOCUMENT ME!
leftHandSystem - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: If true change matrix to the left-hand coordinate system.
leftHandSystem - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: If true change matrix to the left-hand coordinate system.
leftLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Left panel mouse button left.
leftLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
leftLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
leftLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
leftLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
leftLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
LeftLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Transfer function left line:
leftMarker - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
LeftMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
LeftMultiplyE(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
LeftMultiplyF(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
leftNeuron - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
leftPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Space padding around the histogram data area.
leftPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Space padding around the histogram data area.
leftPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
leftPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
leftPad - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
leftPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
leftPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
leftPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: The spaces around the histogram bin area.
leftPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The spaces around the histogram bin area.
leftPadBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
leftPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
leftPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Left panel and right panels corresponding to original and expected extents.
leftPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
leftPanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
leftPanelRenderMode - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The left panel renderer mode.
leftPanelRenderMode - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: The left panel renderer mode.
leftParButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
leftPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
leftPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
leftPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
leftPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
leftPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
leftPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
leftreg(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
leftRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Left panel mouse button right.
leftRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
leftRighticon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
leftRighticon_1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
leftRightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
LeftRotate(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
leftRotateButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
LeftRotateButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.LeftRotateButton: Creates new button with correct icon and given tool tip.
leftSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
leftSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
leftSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
leftSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
leftSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
leftSpace - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: if x is an even number, use the extra space on left half (otherwise right).
leftTable - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
leftTableModel - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
leftTableSorter - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
leftUp - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
leftUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Left panel mouse button up.
leftUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Arrow button references.
leftUpButtonEmpty - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Empty button group.
leg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TURN_REP_REC
leg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.turnrep
LEG - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
LEG() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.LEG
legacyName - Variable in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
legacyNum - Variable in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
legacyNum - Variable in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
legacyNum - Variable in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
legacyNum - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Modality: The legacy number that can be used to reference a modality.
legacyNum - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
legacyNum - Variable in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType: These variables preserve the legacy ordering of these enums.
legacyVal - Variable in enum gov.nih.mipav.model.file.FileInfoDicom.VRtype
Legend() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend
legendBottom - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legendBottomHeight - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legendBottomViewPort - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legendCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
legendPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
legendRight - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legendRightViewPort - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legendRightWidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
legibility(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson
leicaCondenserTurret - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
LeicaFileComparator(int[], String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: Creates a new LeicaFileComparator object.
leicaFilterCubeArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
leicaFIMArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
leicaICTurret - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
leicaMagnificationChanger - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
LeicaMakernoteDescriptor(MetadataExtractor.LeicaMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDescriptor
LeicaMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory
LeicaSeries() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: Creates a new LeicaSeries object.
LeicaType5MakernoteDescriptor(MetadataExtractor.LeicaType5MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDescriptor
LeicaType5MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory
len - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache.head_t
len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_marker_info_t: length, marker val included
len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: length decoded
len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
len - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
len - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache.head_t
len - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.LEG
lenCmprsnHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 76 - length of.
lenDBHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 108 - length of.
lenExamHdr - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
lenExamHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 136 - length of.
lenGraphics - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 100 - length of.
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: dimensions and length
length - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: xDim2*yDim2.
length - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Create arrays of size length+2
length - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
length - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
length - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
length - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
length - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
length - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
length - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.file.FileDicomTag: Length of the tag as defined in the input image.
length - Variable in class gov.nih.mipav.model.file.FileMincDimElem: DOCUMENT ME!
length - Variable in class gov.nih.mipav.model.file.FilePaintBitmap
length - Variable in class gov.nih.mipav.model.file.FileSVS
length - Variable in class gov.nih.mipav.model.file.FileTiff
length - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col
length - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Row
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: Accessor that returns the length in bytes of the AbortRQ (4).
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ: Calculates size of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRQ: Calculates size of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRSP: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: This method returns the length of valid data in the array.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength: Accessor that returns the length in bytes.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: Calculates the PDU item's body size (not including the header).
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect: Calculates length of message.
length() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: Accessor that returns the length in bytes.
length() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
length() - Method in class gov.nih.mipav.model.structures.BufferBase: Gets the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferBoolean: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferByte: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferDouble: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferFloat: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferInt: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferLong: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferShort: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferUByte: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferUInt: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.BufferUShort: Returns the length of the data array.
length() - Method in class gov.nih.mipav.model.structures.IntVector: Length of the array (ie - how many data points are stored).
length(double[], double[], float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the real length (adjusted by the image resolution) of the line between (x[0], y[0]) and (x[1], y[1]).
length(double, double, double, double, float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the real length (adjusted by the image resolution) of the line between (x0, y0) and (x1, y1).
length(float[], float[], float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the real length (adjusted by the image resolution) of the line between (x[0], y[0]) and (x[1], y[1]).
length(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: The length is calculated between to points a,b using Romberg integration.
length(float, float, float, float, float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the real length (adjusted by the image resolution) of the line between (x0, y0) and (x1, y1).
Length() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
Length() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Edge
Length() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Length() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Length() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
Length(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
Length(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
LENGTH - gov.nih.mipav.model.file.FileInfoBase.UnitType
LENGTH - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
length_limit_APPn - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
length_limit_COM - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
lengthLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
LengthStorageUnit(int) - Constructor for class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit: Creates a storage wrapper for a primitive integer variable.
lengthText - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
lenHistoHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 84 - length of.
lenImageHdr - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
lenImageHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 152 - length of.
lenmax - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: maximum length to decode
lens - Variable in class gov.nih.mipav.model.file.FileBioRad: Integer part of the lens magnification.
lens - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
lenSeriesHdr - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
lenSeriesHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 144 - length of.
lensNA - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective
lenSuiteHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 128 - length of.
lent - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
lenText - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
lenTextPlane - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 92 - length of.
lentText - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
lenUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 60 - length of UID.
lenUnpackHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 68 - length of.
lenUsrDefData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 120 - length of.
less - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.sb_tree
less - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
less - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
less(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
less(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
less(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
less(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
less(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
less(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
less_than(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
lessB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
lessEqualThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
lessEqualThan(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
lessEqualThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
lessEqualThan(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
LESSER_ICOST - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream
lesserEqualCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
lesserEqualValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
lesserEqualValue - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
lessG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
lessR - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
lessThan(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
lessThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
lessThan(Entry) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Entry
lessThan(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
lessThan(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
lessThan(UpdateFlags.EdgeSorter) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
lessThan(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
lessThan(JDialogProstateImageCategorize.perImageCost) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
lessThan(JDialogProstateImageCategorize.perShapeCost) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
lessThan(Object, Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
LessThan(StartingPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial
LEVCUR(int, double[], int, double[], double[], double[], double[], double[], double[], String[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
level - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Indicates level surface to be extracted.
level - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Indicates level surface to be extracted.
level - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
level - Variable in class gov.nih.mipav.model.algorithms.Integration2: level contains the subdivision levels of the subinterval, i.e., if (aa, bb) is a subinterval of (p1, p2) where p1 as well as p2 is a user-provided break point or integration limit, then (aa, bb) has level 1 if abs(bb - aa) = abs(p2 - p1) * 2**(-1).
level - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: level contains the subdivision levels of the subinterval, i.e., if (aa, bb) is a subinterval of (p1, p2) where p1 as well as p2 is a user-provided break point or integration limit, then (aa, bb) has level 1 if abs(bb - aa) = abs(p2 - p1) * 2**(-1).
level - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Noise level to be added to the image.
level - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
level - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Average of the min and max extents of the transfer window that describes the window size.
LEVEL_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Extract surface based on intensity level.
LEVEL_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Extract surface based on intensity level.
level1Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Multiplication factor for level 1 - will be set based on subsampling.
level1Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Multiplication factor for level 1 - will be set based on subsampling.
level1Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Multiplication factor for level 1 - will be set based on subsampling.
level1Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Multiplication factor for level 1 - will be set based on subsampling.
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
level1FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
level2Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Multiplication factor for level 2 - will be set based on subsampling.
level2Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Multiplication factor for level 2 - will be set based on subsampling.
level2Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Multiplication factor for level 2 - will be set based on subsampling.
level2Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Multiplication factor for level 2 - will be set based on subsampling.
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
level2FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
level4Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Multiplication factor for level 4 - will be set based on subsampling.
level4Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Multiplication factor for level 4 - will be set based on subsampling.
level4Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Multiplication factor for level 4 - will be set based on subsampling.
level4Factor - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorXY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Multiplication factor for level 4 - will be set based on subsampling.
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
level4FactorZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
level5Format - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
levelCount - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Takes two slices that have been subsampled by a factor of 8 or 16.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Takes two slices that have been subsampled by a factor of 8 or 16.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Takes two images that have been subsampled by a factor of eight.
levelEight(ModelSimpleImage, ModelSimpleImage, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Takes two images that have been subsampled by a factor of eight.
levelEightMultiThread(ModelSimpleImage, ModelSimpleImage, int, boolean, float, int, float, float, float, float, int, int, int, boolean, boolean, boolean, boolean, ModelSimpleImage, ModelSimpleImage, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmConstrainedELSUNCOAR3D.MatrixListItem>, Vector<AlgorithmConstrainedELSUNCOAR3D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmConstrainedOAR3D.MatrixListItem>, Vector<AlgorithmConstrainedOAR3D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmRegELSUNCOAR35D.MatrixListItem>, Vector<AlgorithmRegELSUNCOAR35D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmRegOAR35D.MatrixListItem>, Vector<AlgorithmRegOAR35D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Takes two slices that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Takes two slices that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFour(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Takes two images that have been subsampled by a factor of four, and two vectors of minima.
levelFourMultiThread(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, Vector<MatrixListItem>, int, int, boolean, float, int, float, float, float, float, int, int, int, boolean, boolean, boolean, float, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
levelImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: DOCUMENT ME!
levelImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: DOCUMENT ME!
levelMaxFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: the maxes and mins for window and level *
levelMinFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: the maxes and mins for window and level *
levelOne(ModelSimpleImage, ModelSimpleImage, AlgorithmConstrainedELSUNCOAR3D.MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, AlgorithmConstrainedOAR3D.MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, AlgorithmRegELSUNCOAR35D.MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, AlgorithmRegOAR35D.MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Takes the two slices, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Takes the two slices, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem, int, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Takes the two images, no subsampling, and the best minimum so far.
levelOne(ModelSimpleImage, ModelSimpleImage, MatrixListItem, int, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Takes the two images, no subsampling, and the best minimum so far.
levelOne2D(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: This routine is used only with DOF = 2, translations only.
levelOne2D(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Only used for translations only = 2 degrees of freedom levelEight, levelFour, and levelTwo are skipped Takes the two images, no subsampling.
levelOne2D(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: This routine is used only with DOF = 2, translations only.
levelOne2D(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Only used for translations only = 2 degrees of freedom levelEight, levelFour, and levelTwo are skipped Takes the two images, no subsampling.
levelOne2DMultiThread(ModelSimpleImage, ModelSimpleImage, int, int, boolean, float, int, float, float, float, float, int, int, int, boolean, boolean, boolean, float, ModelSimpleImage, ModelSimpleImage, double[]) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
levelOne2DRotation(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Only used for rotations only = 1 degrees of freedom levelEight, levelFour, and levelTwo are skipped Takes the two images, no subsampling.
levelOne2DRotation(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Only used for rotations only = 1 degrees of freedom levelEight, levelFour, and levelTwo are skipped Takes the two images, no subsampling.
levelOneMultiThread(ModelSimpleImage, ModelSimpleImage, MatrixListItem, int, int, boolean, float, int, float, float, float, float, int, int, int, boolean, boolean, boolean, float, ModelSimpleImage, ModelSimpleImage, double[]) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
levels - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
levels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
levels - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
levels - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
levels - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
levels - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
levels - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
levelSButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Save surface button.
LEVELSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
LEVELSET - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in levelset VOI mode
levelSet3D() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
levelSetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
levelSetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
levelSetStack - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
levelSetStack - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Used to calculate the levelset contour.
levelshift - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
levelshift - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
levelShift() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
levelShift() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
levelSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
levelSliderMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Stores the maximum slider value.
levelsMatch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: DOCUMENT ME!
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmConstrainedELSUNCOAR3D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmConstrainedOAR3D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmRegELSUNCOAR35D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<AlgorithmRegOAR35D.MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Takes two slices that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Takes two slices that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwo(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Takes two images that have been subsampled by a factor of 2 and a vector of minima.
levelTwoMultiThread(ModelSimpleImage, ModelSimpleImage, Vector<MatrixListItem>, int, int, boolean, float, int, float, float, float, float, int, int, int, boolean, boolean, boolean, float, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
levelValTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: textfield inputs for window and level *
levelVButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Save surface button.
levelWButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Save surface button.
levelXMLButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Save surface button.
LEVENBERG_MARQUARDT - gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyType
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
LEVENBERG_MARQUARDT - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
LevenbergMarquardtStrategy(CeresSolver.TrustRegionStrategyOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
LEVMAR_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.Lmmin
LEVMAR_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.LsqFit
LEVMAR_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NESolve
LEVMAR_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
levShift - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Used with level-shifting
levShift - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
LEXICAL_COMPARATOR - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
LEXICAL_NUMS_COMPARATOR - Static variable in class gov.nih.mipav.model.structures.TableSorter: This is comparator such that it also determines if the string has numbers leading the string....if it does have numbers, it sorts using the numbers also
LexicographicallyOrderResidualBlocks(int, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LF - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
lfDisplayChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Look and feel choices.
lgam(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
LGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
lgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma: This code is a port of the FORTRAN routine LGAMA from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 50-51.
LGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Gamma: Compute gamma function or log of gamma function for real x > 0
LGGAM(double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
lhA - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
lhs - Variable in class gov.nih.mipav.model.algorithms.dataStruct
lhs() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
lhs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver
lhs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
lhs_expected - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
lhs_row_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
libdt - Class in gov.nih.mipav.model.algorithms: libdt - OpenCV library for Dynamic Textures - version 1.0 Copyright (c) 2011-2014 Antoni B.
libdt() - Constructor for class gov.nih.mipav.model.algorithms.libdt
libdt.ConfigFile - Class in gov.nih.mipav.model.algorithms
libdt.cov_reg_type - Enum in gov.nih.mipav.model.algorithms: regularization method.
libdt.cov_type - Enum in gov.nih.mipav.model.algorithms: type of covariance matrix.
libdt.CovMatrix - Class in gov.nih.mipav.model.algorithms
libdt.DatDescriptor - Class in gov.nih.mipav.model.algorithms: Structure to represent Dat file Descriptor parameters
libdt.Dytex - Class in gov.nih.mipav.model.algorithms: Dynamic Texture class.
libdt.DytexKalmanFilter - Class in gov.nih.mipav.model.algorithms: class for running the Kalman filter for dynamic texture inference.
libdt.DytexMix - Class in gov.nih.mipav.model.algorithms
libdt.DytexOptions - Class in gov.nih.mipav.model.algorithms
libdt.DytexRegOptions - Class in gov.nih.mipav.model.algorithms: Class for specifying the regularization methods for a Dytex.
libdt.DytexSplitParams - Class in gov.nih.mipav.model.algorithms
libdt.EMOptions - Class in gov.nih.mipav.model.algorithms
libdt.Estats - Class in gov.nih.mipav.model.algorithms
libdt.fill_type - Enum in gov.nih.mipav.model.algorithms
libdt.HEMOptions - Class in gov.nih.mipav.model.algorithms
libdt.indexValueComparator - Class in gov.nih.mipav.model.algorithms
libdt.indexValueItem - Class in gov.nih.mipav.model.algorithms
libdt.kf_mode - Enum in gov.nih.mipav.model.algorithms
libdt.Mat - Class in gov.nih.mipav.model.algorithms
libdt.norm_type - Enum in gov.nih.mipav.model.algorithms: Normalization mode for each patch.
libdt.PatchBatchExtractor - Class in gov.nih.mipav.model.algorithms: Class for extracting spatio-temporal patches (cubes) from a video (batch mode).
libdt.PatchExtractor - Class in gov.nih.mipav.model.algorithms: Class for extracting spatio-temporal patches (cubes) from a video (online mode).
libdt.PatchOptions - Class in gov.nih.mipav.model.algorithms: Class for specifying spatio-temporal patches (cubes).
libdt.Range - Class in gov.nih.mipav.model.algorithms
libdt.Split_crit - Enum in gov.nih.mipav.model.algorithms
libdt.Split_mode - Enum in gov.nih.mipav.model.algorithms
libdt.Split_vars - Enum in gov.nih.mipav.model.algorithms
libdt.Verbose_mode - Enum in gov.nih.mipav.model.algorithms
libdt.VidSegm - Class in gov.nih.mipav.model.algorithms
libdt.VidSeqSegmParams - Class in gov.nih.mipav.model.algorithms
libdt.Ymean_type - Enum in gov.nih.mipav.model.algorithms: Options for modeling the observation mean, Ymean.
libjpeg - Class in gov.nih.mipav.model.file: Ported from C to Java by William Gandler LEGAL ISSUES ============ In plain English: 1.
libjpeg() - Constructor for class gov.nih.mipav.model.file.libjpeg
libjpeg_IDCT - Class in gov.nih.mipav.model.file: Ported from C to Java by William Gandler LEGAL ISSUES ============ In plain English: 1.
libjpeg_IDCT() - Constructor for class gov.nih.mipav.model.file.libjpeg_IDCT
libjpeg.arith_entropy_decoder - Class in gov.nih.mipav.model.file
libjpeg.backing_store_info - Class in gov.nih.mipav.model.file
libjpeg.bitread_perm_state - Class in gov.nih.mipav.model.file
libjpeg.bitread_working_state - Class in gov.nih.mipav.model.file
libjpeg.box - Class in gov.nih.mipav.model.file
libjpeg.cdjpeg_progress_mgr - Class in gov.nih.mipav.model.file
libjpeg.d_derived_tbl - Class in gov.nih.mipav.model.file
libjpeg.huff_entropy_decoder - Class in gov.nih.mipav.model.file
libjpeg.J_BUF_MODE - Enum in gov.nih.mipav.model.file
libjpeg.J_COLOR_SPACE - Enum in gov.nih.mipav.model.file
libjpeg.J_COLOR_TRANSFORM - Enum in gov.nih.mipav.model.file
libjpeg.J_DCT_METHOD - Enum in gov.nih.mipav.model.file
libjpeg.J_DITHER_MODE - Enum in gov.nih.mipav.model.file
libjpeg.J_MESSAGE_CODE - Enum in gov.nih.mipav.model.file
libjpeg.JHUFF_TBL - Class in gov.nih.mipav.model.file
libjpeg.jpeg_color_quantizer - Class in gov.nih.mipav.model.file
libjpeg.jpeg_common_struct - Class in gov.nih.mipav.model.file
libjpeg.jpeg_component_info - Class in gov.nih.mipav.model.file
libjpeg.jpeg_d_coef_controller - Class in gov.nih.mipav.model.file
libjpeg.jpeg_decompress_struct - Class in gov.nih.mipav.model.file
libjpeg.jpeg_entropy_decoder - Class in gov.nih.mipav.model.file
libjpeg.jpeg_error_mgr - Class in gov.nih.mipav.model.file
libjpeg.jpeg_marker_struct - Class in gov.nih.mipav.model.file
libjpeg.jpeg_progress_mgr - Class in gov.nih.mipav.model.file
libjpeg.JQUANT_TBL - Class in gov.nih.mipav.model.file
libjpeg.jvirt_barray_control - Class in gov.nih.mipav.model.file
libjpeg.jvirt_sarray_control - Class in gov.nih.mipav.model.file
libjpeg.large_pool_struct - Class in gov.nih.mipav.model.file
libjpeg.my_coef_controller - Class in gov.nih.mipav.model.file
libjpeg.my_color_deconverter - Class in gov.nih.mipav.model.file
libjpeg.my_cquantizer - Class in gov.nih.mipav.model.file
libjpeg.my_cquantizer2 - Class in gov.nih.mipav.model.file
libjpeg.my_decomp_master - Class in gov.nih.mipav.model.file
libjpeg.my_idct_controller - Class in gov.nih.mipav.model.file
libjpeg.my_input_controller - Class in gov.nih.mipav.model.file
libjpeg.my_main_controller - Class in gov.nih.mipav.model.file
libjpeg.my_marker_reader - Class in gov.nih.mipav.model.file
libjpeg.my_memory_mgr - Class in gov.nih.mipav.model.file
libjpeg.my_post_controller - Class in gov.nih.mipav.model.file
libjpeg.my_source_mgr - Class in gov.nih.mipav.model.file
libjpeg.my_upsampler_jdmerge - Class in gov.nih.mipav.model.file
libjpeg.my_upsampler_jdsample - Class in gov.nih.mipav.model.file
libjpeg.savable_state - Class in gov.nih.mipav.model.file
libjpeg.small_pool_struct - Class in gov.nih.mipav.model.file
libList - Static variable in class gov.nih.mipav.util.NativeLibraryLoader
libre - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
LIBSVM - Class in gov.nih.mipav.model.algorithms: Copyright (c) 2000-2023 Chih-Chung Chang and Chih-Jen Lin All rights reserved.
LIBSVM() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM
LIBSVM_VERSION - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
LIBSVM_VERSION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
LIBSVM.Cache - Class in gov.nih.mipav.model.algorithms
LIBSVM.Cache.head_t - Class in gov.nih.mipav.model.algorithms
LIBSVM.decision_function - Class in gov.nih.mipav.model.algorithms
LIBSVM.Kernel - Class in gov.nih.mipav.model.algorithms
LIBSVM.ONE_CLASS_Q - Class in gov.nih.mipav.model.algorithms
LIBSVM.QMatrix - Class in gov.nih.mipav.model.algorithms
LIBSVM.Solver - Class in gov.nih.mipav.model.algorithms
LIBSVM.Solver_NU - Class in gov.nih.mipav.model.algorithms
LIBSVM.Solver.SolutionInfo - Class in gov.nih.mipav.model.algorithms
LIBSVM.SVC_Q - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_model - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_node - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_parameter - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_print_interface - Interface in gov.nih.mipav.model.algorithms
LIBSVM.svm_problem - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_toy_frame - Class in gov.nih.mipav.model.algorithms
LIBSVM.svm_toy_frame.point - Class in gov.nih.mipav.model.algorithms
LIBSVM.SVR_Q - Class in gov.nih.mipav.model.algorithms
LIFF - Static variable in class gov.nih.mipav.model.file.FileUtility: Do not confuse with Leica image file format .lif
Lifo() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
LifoFlush(AlgorithmPowerWatershed.Lifo) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LifoPop(AlgorithmPowerWatershed.Lifo) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LifoPrint(AlgorithmPowerWatershed.Lifo) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LifoPush(AlgorithmPowerWatershed.Lifo, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LifoTermine(AlgorithmPowerWatershed.Lifo) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
lifoTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LifoVide(AlgorithmPowerWatershed.Lifo) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
LIGHT - gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme
LIGHT_INDEX_AMBIENT - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Ambient light index.
LIGHT_INDEX_AMBIENT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Ambient light index.
LIGHT_INDEX_MAX - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Max number of light.
LIGHT_INDEX_MAX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Max number of light.
LIGHT_INDEX_MODEL_X0Y0Z0 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X0Y0Z0.
LIGHT_INDEX_MODEL_X0Y0Z0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X0Y0Z0.
LIGHT_INDEX_MODEL_X0Y0Z1 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X0Y0Z1.
LIGHT_INDEX_MODEL_X0Y0Z1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X0Y0Z1.
LIGHT_INDEX_MODEL_X0Y1Z0 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X0Y1Z0.
LIGHT_INDEX_MODEL_X0Y1Z0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X0Y1Z0.
LIGHT_INDEX_MODEL_X0Y1Z1 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X0Y1Z1.
LIGHT_INDEX_MODEL_X0Y1Z1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X0Y1Z1.
LIGHT_INDEX_MODEL_X1Y0Z0 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X1Y0Z0.
LIGHT_INDEX_MODEL_X1Y0Z0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X1Y0Z0.
LIGHT_INDEX_MODEL_X1Y0Z1 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X1Y0Z1.
LIGHT_INDEX_MODEL_X1Y0Z1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X1Y0Z1.
LIGHT_INDEX_MODEL_X1Y1Z0 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X1Y1Z0.
LIGHT_INDEX_MODEL_X1Y1Z0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X1Y1Z0.
LIGHT_INDEX_MODEL_X1Y1Z1 - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: light for corner X1Y1Z1.
LIGHT_INDEX_MODEL_X1Y1Z1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: light for corner X1Y1Z1.
LIGHT_INDEX_STATIC - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Static light index.
LIGHT_INDEX_STATIC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Static light index.
lightArray - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: An array of eight lights that can be used for illuminating the surfaces in the scene.
lightArrayBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The branch groups to which the lights are attached.
LightboxGenerator - Class in gov.nih.mipav.model.algorithms: The class creates a RGB image of a 3d image in a Lightbox type format.
LightboxGenerator(ModelImage, int, int, double, int, int, int, int, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.LightboxGenerator: Constructor for Lightbox Image Files that will be used to create a lightBox image.
lightBoxOptions - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lightBulbs - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The structure for the light bulbs.
lightControl - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: light control panel.
lightDirection - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
lightGen - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: DOCUMENT ME!
lightHalftone - Variable in class gov.nih.mipav.model.file.FileSVS
lightHalftone - Variable in class gov.nih.mipav.model.file.FileTiff
lightingFunctions - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
lightingParametersBasic - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
lightingParametersBasicColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
lightingParametersBasicColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
lightManagerEnabled - Variable in class gov.nih.mipav.model.file.FileInfoZVI
lightManagerMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
lightMode - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
lightPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
lightParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
lightRed - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Light red color (used for private tags).
Lights - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
LightSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
lightSource - Variable in class gov.nih.mipav.model.file.FileSVS
lightSource - Variable in class gov.nih.mipav.model.file.FileTiff
LightSource(String, String, String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: Creates a new LightSource object.
lightSourceAttenuation - Variable in class gov.nih.mipav.model.file.FileInfoCZI
lightSourceID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
lightSourceID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser.Pump
lightSourceID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: DOCUMENT ME!
lightSourceIntensity - Variable in class gov.nih.mipav.model.file.FileInfoCZI
LightSourceRef(Integer, Integer, String, Float, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef: Creates a new LightSourceRef object.
lightSourceRefs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: Elements.
lightsources - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
lightSourceWavelength - Variable in class gov.nih.mipav.model.file.FileInfoCZI
lim_Se - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
limit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: DOCUMENT ME!
limit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
limit - Variable in class gov.nih.mipav.model.algorithms.Integration2: Gives an upper bound on the number of subintervals in the partition of lower, upper.
limit - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Gives an upper bound on the number of subintervals in the partition of lower, upper.
limit - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
LIMIT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
limitBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
limitBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
limitCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: If limitCheckBox is selected iterations stop when volume change from initial volume is greater than or equal to volumePercent.
limits - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Translation limits.
limits - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Translation limits.
limits_mm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
limits_mm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
limitTranslation - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
limitTranslationCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
limlst - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqawfe limlst gives an upper bound on the number of cycles, limlst >= 1.
limlst - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqawfe limlst gives an upper bound on the number of cycles, limlst >= 1.
LIN - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
line - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
line - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
line(float, float, int, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
line(float, float, int, float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
line(int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: This function draws a 2D line on the canvas image -- ontop of the currently rendered image.
line(int, int, int, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: This function draws a 2D line on the canvas image -- on top of the currently rendered image.
Line(float, float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line
Line(float, float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line
Line(float, float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line
Line(float, float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line
Line(float, float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line
LINE - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type Line made up of two points.
LINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
LINE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in 2D line VOI mode
LINE_DELIM - Static variable in class gov.nih.mipav.plugins.ManifestFile: System-dependent line delimiter.
LINE_SEARCH - gov.nih.mipav.model.algorithms.CeresSolver.MinimizerType
LINE_SEARCH - Variable in class gov.nih.mipav.model.algorithms.NESolve
line_search_cost_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_direction_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
line_search_direction_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
line_search_direction_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
line_search_direction_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
line_search_direction_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_function_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
line_search_gradient_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_gradient_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
line_search_interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
line_search_interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
line_search_interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
line_search_interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
line_search_interpolation_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
line_search_polynomial_minimization_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
line_search_polynomial_minimization_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_sufficient_curvature_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
line_search_sufficient_curvature_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
line_search_sufficient_curvature_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
line_search_sufficient_function_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
line_search_sufficient_function_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
line_search_sufficient_function_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
line_search_total_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
line_search_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
line_search_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
line_search_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
line_search_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
line_search_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
LINE_SEPARATOR - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: The line separator to use for scripts.
LINE_SEPARATOR - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder: The line separator to use for scripts.
lineAnnotations(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Creates the line annotations.
Linear - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Linear() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
LINEAR - gov.nih.mipav.model.algorithms.SIFT3D.interp_type
LINEAR - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
LINEAR - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Linear interpolation mode.
LINEAR - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate linear (ie. bilinear, trilinear) interpolation.
LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
LINEAR - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Linear tranfer function mode (grayscale).
LINEAR_COST_FUNCTION_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
LINEAR_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
LINEAR_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: This dialog only allows 1 constant and 3 exponentials in the MULTIEXPONENTIAL_FIT at the present.
LINEAR_FULL_RANK - Variable in class gov.nih.mipav.model.algorithms.Lmmin
LINEAR_FULL_RANK - Variable in class gov.nih.mipav.model.algorithms.LsqFit
LINEAR_FULL_RANK - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
LINEAR_RANK1 - Variable in class gov.nih.mipav.model.algorithms.Lmmin
LINEAR_RANK1 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
LINEAR_RANK1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
LINEAR_RANK1_WITH_ZERO_COLUMNS_AND_ROWS - Variable in class gov.nih.mipav.model.algorithms.Lmmin
LINEAR_RANK1_WITH_ZERO_COLUMNS_AND_ROWS - Variable in class gov.nih.mipav.model.algorithms.LsqFit
LINEAR_RANK1_WITH_ZERO_COLUMNS_AND_ROWS - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
linear_solver - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
linear_solver - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
linear_solver_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
linear_solver_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
LINEAR_SOLVER_FAILURE - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType
LINEAR_SOLVER_FATAL_ERROR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType
linear_solver_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
LINEAR_SOLVER_NO_CONVERGENCE - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType
linear_solver_options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
linear_solver_ordering - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
linear_solver_ordering_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
linear_solver_ordering_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
LINEAR_SOLVER_SUCCESS - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType
linear_solver_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
linear_solver_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
linear_solver_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
linear_solver_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTestOptions
linear_solver_type_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
linear_solver_type_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
LINEAR_ZOOM - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage: Used to indicte linear zoom steps (2x, 3x, 4x, 5x ...).
Linear.GroupClassesReturn - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: used as complex return type
linear2srgb(double) - Method in class gov.nih.mipav.model.algorithms.BlindDeblur
linearBackSlashMode() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Sets mode to linear and shows component.
LINEARC - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
LINEARC - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
LINEARC2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
linearCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to select linear rescaling of second image.
linearCorrelation - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
linearCorrelation - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The linear correlation coefficient for all points with either buffer[i] >= threshold1 or secondBuffer[i] >= threshold2.
LinearCostFunction(Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
LinearCostFunction2(double, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
LinearEquations - Class in gov.nih.mipav.model.structures.jama
LinearEquations() - Constructor for class gov.nih.mipav.model.structures.jama.LinearEquations: Creates a new LinearEquations object.
LinearEquations2 - Class in gov.nih.mipav.model.structures.jama
LinearEquations2() - Constructor for class gov.nih.mipav.model.structures.jama.LinearEquations2: Creates a new LinearEquations2 object.
LinearEquations3 - Class in gov.nih.mipav.model.structures.jama
LinearEquations3() - Constructor for class gov.nih.mipav.model.structures.jama.LinearEquations3: Creates a new LinearEquations3 object.
linearFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
LinearIndexToUpperTriangularIndex(int, int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
linearInterpGetY(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: get y based on equation of linear interpolation
linearInterpolation(float[], float, float, float, float, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: linear interpolation, with value outside the image
linearInterpolation(float[], float, float, float, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: linear interpolation, with value outside the image
LINEARIZED_DAMPED_PENDULUM - Variable in class gov.nih.mipav.model.algorithms.ODE
LINEARIZED_DAMPED_PENDULUM - Variable in class gov.nih.mipav.model.algorithms.ODEEP
LinearLeastSquaresProblem() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
LinearLeastSquaresProblem0() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearLeastSquaresProblem1() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearLeastSquaresProblem2() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearLeastSquaresProblem3() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearLeastSquaresProblem4() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
linearMode() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Sets mode to linear and shows component.
linearMode() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Resets mode to linear and shows component.
linearMode() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Sets mode to linear and shows component.
linearMode() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Resets mode to linear and shows component.
linearMode() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Switch the histogram component to linear line mode.
LinearOperator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
linearReslice() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslices the data into isotropic voxels using linear interpolation.
LinearSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver
LinearSolverAndEvaluatorCreationTest(CeresSolver.ProblemImpl, double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest
LinearSolverAndEvaluatorCreationTestCGNR() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestDenseNormalCholesky() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestDenseQR() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestDenseSchur() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestInnerIterationsWithTwoParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestInvalidInnerIterationsOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestIterativeSchur() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestMinimizerIsAwareOfBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestSchurTypeSolverWithBadOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestSchurTypeSolverWithEmptyFirstEliminationGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestSchurTypeSolverWithEmptySecondEliminationGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestSchurTypeSolverWithGoodOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverAndEvaluatorCreationTestValidInnerIterationsOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LinearSolverForZeroEBlocks(CeresSolver.LinearSolverType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearSolverOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
LinearSolverPerSolveOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverPerSolveOptions
LinearSolverSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverSummary
LinearSolverTerminationType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType
LinearSolverType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
LinearSolverTypeToString(CeresSolver.LinearSolverType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LinearStretchClamp(CDVector, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Maps a vector linearly from [x1;x2] to [new_min;new_max].
LinearStretchMinMax(CDVector, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Maps a vector linearly from [min;max] to [new_min;new_max].
lineBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Red guide line branch group.
linebuf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
lineButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
lineButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Line shape button.
lineButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Line shape button.
lineColor - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
lineColor - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
lineComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
lineEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar containing the number of function evaluations caused by the linesearch algorithm.
lineEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar containing the number of function evaluations caused by the linesearch algorithm.
lineEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
lineJustify - Static variable in class gov.nih.mipav.model.file.FileLIFF
LineLabel(String, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel
LineLabel(String, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel
lineLabels - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
lineMax1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The endpoints of the line segment in (buffer,secondBuffer) values.
lineMax2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The endpoints of the line segment in (buffer,secondBuffer) values.
LineMeter - Class in gov.nih.mipav.view: LineMeter is a history-graph panel which updates its display once a second, drawing a curve of the history of inputs to setAmplitude().
LineMeter() - Constructor for class gov.nih.mipav.view.LineMeter: This is the history graph, and sets up and animation thread.
lineMin - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
lineMin(Matrix4f, Matrix4f, float, float, double[], double[], int, double[], double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
lineMin(Matrix4f, Matrix4f, float, float, double[], double[], int, double[], double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
lineMin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
lineMin1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The endpoints of the line segment in (buffer,secondBuffer) values.
lineMin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
lineMin2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The endpoints of the line segment in (buffer,secondBuffer) values.
lineMinimization(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Minimizes the point along the given vector direction.
LineMinimizationEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render
LineMinimizationEffect(Texture, boolean, Matrix4f, Matrix4f, float, float, float[], float[], float, float[], float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
LineMinimizationEffect(Texture, Texture, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
LineMinimizationEffect(Texture, Texture, Texture, float, float, float, float, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
lineMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Flag indicating if the surface is currently in line mode (true) or fill mode (false).
lineNumber - Variable in exception gov.nih.mipav.model.scripting.ParserException: The line number in the script where this error occurred.
lineOffset - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
linePoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
linePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
linePosition - Variable in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage
lines - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
Lines - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
Lines - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
Lines - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.SData
Lines() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Lines
LINES - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
LINES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Free-hand sculpting
LINESCAN_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch
LineSearch(CDVector, double, CDVector, CDVector, CDVector, double[], boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Warpper for line search
LineSearch(CDVector, double, CDVector, CDVector, CDVector, double[], boolean[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
LineSearchDirection() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirection
LineSearchDirectionOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions
LineSearchDirectionType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
LineSearchDirectionTypeToString(CeresSolver.LineSearchDirectionType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LineSearchFunction(CeresSolver.Evaluator) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
LineSearchInterpolationType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
LineSearchInterpolationTypeToString(CeresSolver.LineSearchInterpolationType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
LineSearchMinimizer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer
LineSearchMinimizerTestFinalCostIsZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
LineSearchOptionsAreValid(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
LineSearchPreprocessor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchPreprocessor
LineSearchPreprocessorNormalOperation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchPreprocessorParameterBlockHasBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchPreprocessorProblemWithInvalidParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchPreprocessorRemoveParameterBlocksFailed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchPreprocessorRemoveParameterBlocksSucceeds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchPreprocessorZeroProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LineSearchSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
LineSearchType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType
LineSearchTypeToString(CeresSolver.LineSearchType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
lineSlope - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
linesOnlyButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
lineSpacing - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
LinesRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
lineuc(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
lineuc(DoubleDouble[], DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
lineVOI - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
linhx - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
linhx - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
linhy - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
linhy - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
link - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Linking information for sub-algorithms
link - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.Linking
link(int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Link - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Link() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
Link(Vertex, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
linkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: DOCUMENT ME!
linkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: DOCUMENT ME!
LinkedComparator() - Constructor for class gov.nih.mipav.model.file.FileIO.LinkedComparator
linkedFilename - Variable in class gov.nih.mipav.model.file.FileImageXML: Name of the file linked to this file (separate from fileName).
linkedImageButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
linkedImageField - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
linkedImagePath - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: linked image path (optional).
LinkedNum(float, int) - Constructor for class gov.nih.mipav.model.file.FileIO.LinkedNum
linkedScrolling - Variable in class gov.nih.mipav.view.ViewJFrameBase: Variable indicating if images of like dimensions should be scrolled simult.
linkFrame - Variable in class gov.nih.mipav.view.ViewJFrameBase: Holds a reference (link) to another frame so that it be updated with this frame.
Linking(Runnable, int, int) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti.Linking
linkingNodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
linkJunctionNodes(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
linkNodes(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
linkProgress(FileBase) - Method in class gov.nih.mipav.model.file.FileBase
linkProgressToAlgorithm(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Helper function to link the currently listening progress bar with an algorithm created within an algorithm.
linkProgressToAlgorithm(AlgorithmBase, String, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: New helper function for use with the ViewJProgressBarMulti.
links - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
linkToComms - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink: Reference to the link communications object.
linkTriFrame - Variable in class gov.nih.mipav.view.ViewJFrameBase: Holds a reference (link) to another frame so that it can be updated with this frame.
linrat - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
LINSEG(boolean[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
linspace(double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
Linspace(double, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Generates a vector of linearly equally spaced points between x1 and x2 (inclusive).
linspace_multi(double[], double[], int, double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
linuc2(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
linuc2(DoubleDouble[], DoubleDouble, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
linvrt(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
list - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterList: The list of parameters.
list - Variable in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: List of installed plugins.
list - Variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: DOCUMENT ME!
list - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: List of lights.
list - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: List of lights.
list - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
LIST2Size - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
LIST2subchunkSize - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
listA - Variable in class gov.nih.mipav.view.JPanelListController: upper or left-most list.
listB - Variable in class gov.nih.mipav.view.JPanelListController: lower or right-most list.
listButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
listener - Variable in class gov.nih.mipav.view.ViewMenuBuilder: The class which wants to listen to the menu items generated.
listener - Variable in class gov.nih.mipav.view.ViewMenuBuilder.QuickList: DOCUMENT ME!
listenerList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: A list of the ChangeListeners which are interested in the ChangeEvent.
listenerList - Variable in class gov.nih.mipav.model.file.FileBase: A list of the ChangeListeners which are interested in the ChangeEvent.
listenerList - Variable in class gov.nih.mipav.model.provenance.ProvenanceHolder: A list of the ChangeListeners which are interested in the ChangeEvent.
listenerList - Variable in class gov.nih.mipav.model.structures.VOI: VOIListeners that are updated when this VOI changes
listenerList - Variable in class gov.nih.mipav.model.structures.VOIVector: holds all interfaces listening to this vector.
listenerList - Variable in class gov.nih.mipav.view.dialogs.GuiBuilder
listenerList - Variable in class gov.nih.mipav.view.ImageRegistryMonitor: DOCUMENT ME!
listenerList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: created to handle VOI updates.
listenerList - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
listeners - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
listEntry - Variable in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode
listFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: list file *
listFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: List file name
listFiles(File) - Method in class gov.nih.mipav.view.ViewImageFileFilter: Returns a list of the files in the directory that satisfy the file filter.
listLayout - Variable in class gov.nih.mipav.view.JPanelListController: DOCUMENT ME!
listLength - Variable in class gov.nih.mipav.view.JPanelChecklist: must be given a nonzero number on instantiation. must be of same size as checkboxLabels.
listModel - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
listModel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: List to record info for each mouse, change events.
listModel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: List to record info for each mouse, change events.
listModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
listPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
listPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
listPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: The list of statistics to calculate
listPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
listScrollPane - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
listSelectorDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
listType - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterList: The data type of the elements in this parameter list.
litArray - Variable in class gov.nih.mipav.model.file.FilePackBit: Temporary buffer.
litekmeans(int[][], Matrix, boolean[], double[], Matrix, Matrix, int, String, Matrix, int[], String, int, int, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
LITTLE_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Flag used to indicate Little Endianess.
LITTLE_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileBase: Byte order.
LITTLE_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileDicomBase: Byte order.
littleEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
littleEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Radio button to denote image is little endian.
litvmu(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
liverPresetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Liver segmentation preset opacity transform function control button.
liveWire(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
LIVEWIRE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
LIVEWIRE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in livewire VOI mode
livmul(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
ll - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream.StackElem
ll_full(double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ll_full(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ll_full_no_cens(double[][], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ll_full_no_cens(double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
ll_weib_beta_cen_r(double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_cen_r
ll_weib_beta_uncen(double[]) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.ll_weib_beta_uncen
ll8 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
llA - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
lleAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE: DOCUMENT ME!
llh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
LLMSE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
LLMSE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
LLVL - gov.nih.mipav.model.structures.jama.SuperLU.MemType
lm - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
lm_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
lm_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
LM_DWARF - Variable in class gov.nih.mipav.model.algorithms.Lmmin
lm_enorm(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.Lmmin
lm_infmsg - Variable in class gov.nih.mipav.model.algorithms.Lmmin: Set message texts (indexed by info)
lm_lmdif() - Method in class gov.nih.mipav.model.algorithms.Lmmin
lm_lmpar(int, double[], int, int[], double[], double[], double, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Lmmin
LM_MACHEP - Variable in class gov.nih.mipav.model.algorithms.Lmmin: resolution of arithmetic
lm_printout_std(double[], double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Lmmin
lm_qrfac(int, int, double[], int, int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Lmmin
lm_qrsolv(int, double[], int, int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Lmmin
lm_shortmsg - Variable in class gov.nih.mipav.model.algorithms.Lmmin
LM_SQRT_DWARF - Variable in class gov.nih.mipav.model.algorithms.Lmmin: Square should not underflow
LM_SQRT_GIANT - Variable in class gov.nih.mipav.model.algorithms.Lmmin: Square should not overflow
LM_USERTOL - Variable in class gov.nih.mipav.model.algorithms.Lmmin
Lmax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
Lmax - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
lmem_size - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
lMemSize - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.fftPadding
lmHor - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 88 - Horizontal landmark.
Lmin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
Lmin - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
Lmmin - Class in gov.nih.mipav.model.algorithms: To run self tests in another module put: if (testMode) { new FitAll(); setCompleted(false); return; } class FitAll extends Lmmin { public FitAll() { super(); } public void fitToFunction(double x[], double fvec[], int info[]) { return; } }
Lmmin() - Constructor for class gov.nih.mipav.model.algorithms.Lmmin
Lmmin(int, int) - Constructor for class gov.nih.mipav.model.algorithms.Lmmin
Lmmin(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Lmmin
lmModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
lmModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
lmstep(double[], double[], int[], int[], int[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
lmt_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.lmt_node
lnButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
Lnchf - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Tells how the result should be represented A '0' will return the result in standard exponential form.
Lneg - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
LNSEG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
lnsrlb(int, double[], double[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int, int[], int[], int[], int[], String[], boolean, boolean, String[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
LNSY11(double[][][], double[], int, int, int, boolean, int, int, int[], int[], int[], int[], int[], int[], int[], double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, boolean[], double[], int[], double[], double[], double[], double[], double, double, double[], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
lo - Variable in class gov.nih.mipav.util.DoubleDouble: The low-order component of the double-double precision value.
LO - gov.nih.mipav.model.file.FileDicomTagInfo.VR
load() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Loads the mouse actions as an object file.
load() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Loads the mouse actions as an object file.
load() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Calls a file chooser then loads the quad mesh from that file.
load(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model: see Linear.loadModel(File)
load(RandomAccessFile) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: Support for loading the collapse records from a binary file.
load(RandomAccessFile) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Support for loading the collapse records from a binary file.
load(Reader) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model: see Linear.loadModel(Reader)
load(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
LOAD_BLANK - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
LOAD_DEFAULT - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Loads default for this dialog
load_forest_filename - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
LOAD_FROM_FILE - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
LOAD_FROM_FRAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
load_images(FileJPEG2000.dircnt_t, String) - Method in class gov.nih.mipav.model.file.FileJPEG2000
LOAD_PROFILE - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Loads profile for this dialog
loadAllImageJVOIsFrom(String, boolean, VOIVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: This method loads all ImageJ VOIs to the active image from a given directory.
loadAllMatrixComand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
loadAllVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: This method loads all VOIs to the active image from the default VOI directory for that image.
loadAllVOIs(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method loads all VOIs to the active image from the default VOI directory for that image.
loadAllVOIsFrom(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: This method loads all VOIs to the active image from a given directory.
loadAllVOIsFrom(String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method loads all VOIs to the active image from a given directory.
loadAllVOIsFrom(String, boolean, VOIVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: This method loads all VOIs to the active image from a given directory.
loadAnisotropyFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: browses and loads anisotropy file
loadAnisotropyFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Launches the JFileChooser for the user to select the functional anisotropy file.
loadAxisDefaults - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip
loadB - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
loadB0MatrixComand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
loadBandwidths(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
loadBMatrixFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Loads the BMatrix file.
loadBMatrixFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Loads the BMatrix file.
loadButton - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
loadButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: buttons *
loadButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
loadButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
loadButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
loadButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
loadButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Button enabled when all required images are loaded.
loadButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Read new multi-histogram widgets from file.
loadBValGradFileButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
loadCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
loadClass(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Trys to find and load an action's corresponding class from a list of package prefixes.
loadClass(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
loadClass(String, boolean) - Method in class gov.nih.mipav.plugins.JarClassLoader
loadCMesh(RandomAccessFile, ViewJProgressBar, int, int) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Load the clod mesh from a binary file.
loadCMesh(RandomAccessFile, ViewJProgressBar, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load the clod mesh from a binary file.
loadCMesh(RandomAccessFile, JProgressBar, int, int) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Load the clod mesh from a binary file.
loadComponents(Component, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
loadConsts(double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
loaddat(String, String) - Method in class gov.nih.mipav.model.algorithms.libdt
LoadDataSetNiceContour(String, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
loadDataThreads - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
loaddatinfo(String, int) - Method in class gov.nih.mipav.model.algorithms.libdt
loadDefaults() - Method in interface gov.nih.mipav.view.DialogDefaultsInterface: Method for loading dialog defaults.
loadDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Loads the defaults of profile 0.
loadDefaults(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Loads default values for gui components in the dialog.
loadDeformationFieldCommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
loadDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
loadDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
loadDiameters(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
loadDoubleVectorFromFile(Vector<Double>, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
loadDTIColorFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
loadDTIFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Launches the JFileChooser for the user to select the Diffusion Tensor Image.
loadDTIFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Launches the JFileChooser for the user to select the Diffusion Tensor Image.
loadDTIStudioPolyline(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack
loadDWICommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
loadDWIFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
loadDWIListFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Launches the JFileChooser for the user to select the Diffusion Weighted Images .path file.
loadDWIListFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Launches the JFileChooser for the user to select the Diffusion Weighted Images .path file.
loadDWIMaskFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Launches the JFileChooser for the user to select the Diffusion Weighted Images .path file.
loadDynamicLib(String, String) - Static method in class gov.nih.mipav.view.MipavUtil: Loads a dynamic library of the given name and path and places it in the Java temp directory.
loadEigenVectorFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: browses and loads eigen vector file
loadEigenVectorFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Launches the JFileChooser for the user to select the Eigen Vector file..
loadEValueFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
loadEVFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
loadFAFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
loadFieldDefaults() - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Tries to set the bug report field defaults based on system properties or last-entered data.
loadFile(JFileChooser) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
loadFile(JTextField) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Loads a user-selected image file.
loadFileActionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Handles the action event generated by the "Load label file" dialog.
loadFileActionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: load image files and voi files
loadFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: load image files and voi files
loadFinalData(ModelImage, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
loadForest(int, int, Vector<Vector<Vector<Integer>>>, Vector<Vector<Integer>>, Vector<Vector<Double>>, int, Vector<Vector<Vector<Double>>>, Vector<Double>, Vector<Boolean>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
loadForest(int, int, Vector<Vector<Vector<Integer>>>, Vector<Vector<Integer>>, Vector<Vector<Double>>, Vector<Boolean>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
loadForest(int, int, Vector<Vector<Vector<Integer>>>, Vector<Vector<Integer>>, Vector<Vector<Double>>, Vector<Double>, Vector<Boolean>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
loadForest(int, int, Vector<Vector<Vector<Integer>>>, Vector<Vector<Integer>>, Vector<Vector<Double>>, Vector<Double>, Vector<Vector<Vector<Double>>>, Vector<Boolean>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
loadFromFile(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
loadFromFile(String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
loadFromFileInternal(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
loadFromFileInternal(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
loadFromFileInternal(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
loadFromFileInternal(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
loadFromFileInternal(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
loadFromFileOther(BufferedReader, String, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
loadGiftiXMLMesh(String, String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read Gifti mesh from file.
loadGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Calculates histogram for the gradient magnitude imageA, B.
loadGMImage(String, String, boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Loads the gradient magnitude image instead of recalculating the image.
loadGMImage(String, String, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Loads the gradient magnitude image instead of recalculating the image.
loadImage() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans
loadImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
loadImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
loadImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
loadImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Ask the user for an image to load and return it.
loadImage(Object, ViewJComponentEditImage, boolean, boolean, boolean, double, double, double, double, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: Loads an image into imageB slot of frame.
loadImageFile(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Reads in an image icon from either the set of mipav icons or the user's $HOME/mipav/brushes/ directory.
LOADING_STR - Static variable in class gov.nih.mipav.view.ViewUserInterface: String to use as the progress bar loading prefix.
loadingImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Load a new ModelImage for the brainsurface flattener scene:
loadingImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Method to load the mask image.
loadingImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Load a new ModelImage to use for the 3D Texture display:
loadingImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Method to load the mask image.
loadingImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Load a new ModelImage to use for the 3D Texture display:
loadingSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Load a new surface file for the brainsurface flattener scene:
loadingSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Mask to load the surface image.
loadLabelsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
loadLeica(JDialogLoadLeica.LeicaSeries) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Loads the selected Leica series into a new ViewJFrameImage uses the FileTiff to read each Tiff image and construct the appropriate model image based on the LeicaSeries attributes which were read in from the text header.
loadLUT(boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method loads the LUT for the active image.
LoadLUT(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Loads the lookup table and generates the inverse, i.e. assumes that the LUT monotonic.
loadLUTandTransferFunctionFrom(boolean, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

This method loads the LUT for the active image.
loadLUTandTransferFunctionFrom(boolean, String, String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method loads the LUT for the active image.
loadLUTandTransferFunctionFrom(ModelImage, ModelStorageBase, boolean, String, String, boolean) - Static method in class gov.nih.mipav.view.ViewJFrameBase: Reads the input LUT (ModelLUT or ModelRGB) from file.
loadLUTFrom(boolean, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

This method loads the LUT for the active image.
loadLUTFrom(boolean, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

This method loads the LUT for the active image.
loadMaskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: button *
loadMaskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
loadMaskImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
loadMenuItem - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
loadModel(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: Loads the model from the file with ISO-8859-1 charset.
loadModel(Reader) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: Loads the model from inputReader.
loadMouseDrivers() - Method in class gov.nih.mipav.view.ViewUserInterface
loadMultiHistograms(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
loadName - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: the name of the loaded brush (used with the above wasLoaded parameter)
loadNativeLibraries() - Static method in class gov.nih.mipav.util.NativeLibraryLoader: Loads the MIPAV native libraries after extracting them.
loadOK - Variable in class gov.nih.mipav.view.ViewSplashScreen: Whether the splash screen was loaded from disk successfully.
loadOK() - Method in class gov.nih.mipav.view.ViewSplashScreen: Method determines whether image loading failed.
loadPage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Loads the images for a page into component images and then loads the page.
loadPage() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Loads the currentPage images see loadPage(int page).
loadPage(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Loads the images for a page into component images and then loads the page.
loadPaintBrush(String, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Loads built-in (.gif) or custom (.png) paint brushes based on the last-used paint brush in preferences.
loadParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Load camera and object viewing parameters.
loadParams() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: loads heuristic parameter values
loadParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: loads heuristic parameter values
loadPathFile(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Loads the .path file.
loadPathFile(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Loads the .path file.
loadPixelGrid(AlgorithmNetworkSnake.PixelGrid) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
loadPixels(ArrayList<AlgorithmNetworkSnake.Pixel>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
loadPlugin(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
loadPlugin(String, Object, String) - Static method in class gov.nih.mipav.plugins.PluginUtil
loadPluginClass(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
loadPluginClass(String, Object, String) - Static method in class gov.nih.mipav.plugins.PluginUtil
LoadPly_FaceAux - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
LoadPly_FaceAux() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
LoadPly_TristripAux - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
LoadPly_TristripAux() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_TristripAux
LoadPly_VertAux - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
LoadPly_VertAux() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
loadPlyAsciiMesh(File, ModelImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read a TriMesh from a Ply ascii file.
loadPlyAsciiMesh(File, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
loadPolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
loadPositions(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
loadppftfilter(int[], double[][][][], String, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
loadPreferences() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Loads the graph preferences file from the Preferences.grtPreferencesDir directory.
loadProfile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Parses through the profile in the MIPAV preferences to determine which Supplement 55 tags are selected, which public tags exists (and were selected), and which private tags exist (and were selected).
loadProfile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Parses through the profile in the MIPAV preferences to determine which tags were selected and set them correctly in the respective panels.
loadProfiles() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Loads profile names that are available for the dialog
loadProstateMask() - Method in class gov.nih.mipav.view.ViewJFrameImage
loadQMesh(RandomAccessFile, ViewJProgressBar, int, int) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Load the quad mesh from a binary file.
loadResampledImage(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase: Resamples an image and loads it into the imageB slot.
loadSamplePlanes(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
loadsaveLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
loadsavePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
LoadShapes(CAAMShapeCollection, Vector<ModelImage>, int, boolean, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Load all training shapes from prostate image vector VOIs.
LoadShapes(Vector<String>, CAAMShapeCollection, int, boolean, double, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Loads (and preprocess) all training shapes.
loadShared() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
LoadState() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
loadSTLAsciiMesh(File, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load the STL ASCII file.
loadSTLBinaryMesh(File, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load the STL ASCII file.
loadSTLBinaryMesh(File, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
loadSTLBinaryMesh(File, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
loadSTLBinaryMesh(File, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
loadSTLBinaryMesh(File, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
loadSTLBinaryMesh(File, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
loadSTLBinaryMesh(File, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
loadT2Command - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: button commands
loadT2File() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
loadT2File() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
loadTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
loadTagBuffer(int) - Method in class gov.nih.mipav.model.file.FileDicomBase: Setups the allocation of memory for the byte buffer to load tags.
loadTMesh(RandomAccessFile, ViewJProgressBar, int, int, boolean) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Load the triangle mesh from a binary file.
loadTMesh(RandomAccessFile, ViewJProgressBar, int, int, boolean, MaterialState, float[], float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load the TriMesh from a binary file.
loadTMesh(RandomAccessFile, JProgressBar, int, int) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Load the triangle mesh from a binary file.
loadTractFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Launches the JFileChooser for the user to select the tract file.
loadType - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: are we loading from frame, file, or blank.
loadValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
loadVisualizationButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Load button for the opacity transform function.
loadVisualizationDataFrom(boolean, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: This method loads the LUT and opacity transfer function for the active image.
loadVisualizationSettings(TransferFunction, TransferFunction) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Loads visualization settings for this image.
loadVRMLMesh(RandomAccessFile, ViewJProgressBar, int, int, boolean) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Load the triangle mesh from a VRML file specifically written by MIPAV!.
loadVRMLMesh(RandomAccessFile, ViewJProgressBar, int, int, boolean, float[], float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load the triangle mesh from a VRML file specifically written by MIPAV.
loadVTKLegacyMesh(RandomAccessFile, ViewJProgressBar, int, int, boolean, String) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
loadVTKLegacyMesh(RandomAccessFile, ViewJProgressBar, int, int, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load legacy VTK mesh.
loadVTKLegacyPolyline(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack
loadVTKXMLMesh(String, ViewJProgressBar, int, int, boolean, String, String) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
loadVTKXMLMesh(String, String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read VTK mesh from file.
loc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
loc - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < patch options.
loc_ras - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 124 1 byte RAS letter of image location.
Local - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
local_column_bounds_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
local_jacobians - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
local_numeric_jacobians - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
local_parameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
local_parameterization_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
local_parameterization_jacobian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
local_parameterization_ownership - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
local_parameterizations_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientChecker
local_parameterizations_to_delete_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
local_params_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
local_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
local_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
localAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Move: Local application entity of the
localArrayListFlavor - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
localArrayListType - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
localCoarseGradient - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
localCosts - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
localCosts - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
localImageExtents - Variable in class gov.nih.mipav.view.PatientSlice: image extents in the local coordinate system:.
localImageExtents - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Extents of the 3D image.
localImageExtents - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: imageActive extents in the local (Patient) coordinate system:.
LocalIntensityOrderPattern - Class in gov.nih.mipav.model.algorithms
LocalIntensityOrderPattern() - Constructor for class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
LocalIntensityOrderPattern.tliop - Class in gov.nih.mipav.model.algorithms
LocalIntensityOrderPattern.VlLiopDesc - Class in gov.nih.mipav.model.algorithms
localizeExtremumViaQuadraticFit(int[], int, int, int, int, int, ModelImage[], double, double, int, double, int) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
localizeFrame - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
locall - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < size of the video.
locall - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
locall_mask - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < coordinates of top-left of all patches.
locall_mask - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
LocallyParameterizedCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.LocallyParameterizedCostFunction
LocallyParameterizedCostFunction(int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.LocallyParameterizedCostFunction
LocallyParameterizedCostFunction(int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.LocallyParameterizedCostFunction
LocalParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
LocalParameterizationJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
localROI - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
LocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
localTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: newmsWait = msWait - msElapsed is passed to the sleep function.
localTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: newmsWait = msWait - msElapsed is passed to the sleep function.
localTime2 - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
localTime2 - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
localToGlobal(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
LocalToPatient(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender
LocalToPatient(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
LocalToPatient(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
localToScannerCoords(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Converts the input point from local coordinates used to display the object in the volume renderer to scanner coordinates.
LocalToScreen(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
LocalToScreen(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
LocalToScreen(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentBase: LocalToScreen converts a point from local coordinates to screen coordinates.
localToVolumeCoords(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Converts the input point from local coordinates used to display the object in the volume renderer into volume-index coordinates.
LocalVolumeVOI(Polyline, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
LocalVolumeVOIVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOIVector
locate_loops() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
locateDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Setting location of window-level adjustment panel based on the amount of space available near the image window.
locateImageTag(int, int, int) - Method in class gov.nih.mipav.model.file.FileDicomBase: Locates a DICOM image beginning at the given offset.
locateVOIPoint(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.VOIPoint: Sets the point at (xP,yP,zP).
location - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
location - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution
location - Variable in class gov.nih.mipav.model.file.FileIO.OrientStatus: DOCUMENT ME!
location - Variable in class gov.nih.mipav.model.file.FileMinc: TODO: THIS VARIABLE MUST BE REMOVED!
locationCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
locationEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
locationField - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
locationFilterPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
locationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
locations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
locations - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
locationX - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
locationY - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
locationZ - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
LOCK_PROGRESS_MESSAGE - Static variable in class gov.nih.mipav.view.ViewJProgressBar: Constant indicating whether to lock the message string so that other algorithms will not change this (sub-algorithms)
lockAll() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: locks all masks
lockAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: lock all masks checkbox *
locked - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
lockPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: lock panel
lockSize(JFrame) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Only allow resizing the frame horizontally.
lockStatus - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Locking status of the image.
locyx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < number of columns in the video frame.
locyx_mask - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < (y,x) coordinates of top-left of each patch.
locz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < patch mask depending on pixel variance.
LODMesh - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh(int, int, int[][], Vector3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
LODMesh.Edge - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.Neighbor - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.NEList - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.PriorityQueue - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.PriorityQueue.HeapNode - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.Quadric - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.Triangle - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
LODMesh.Vertices - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
log - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
log() - Method in class gov.nih.mipav.util.DoubleDouble: For x > 0, ratio = (x-1)/(x+1), log(x) = 2(ratio + ratio**3/3 + ratio**5/5 + ...)
Log() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Takes the natural logarithm (base e=2.71..) of each matrix element.
Log() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes the natural logarithm of each element.
LOG - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
LOG - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
LOG_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
LOG_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Logging Tab.
log_to_stdout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LoggingCallback
log1p(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
LOG1P - Static variable in class gov.nih.mipav.model.algorithms.Cephes
log2(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
log2(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
log2(double) - Method in class gov.nih.mipav.model.algorithms.Covdet
log2(double) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
log2(double) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
log2(double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
log2(double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
log2(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
log2(double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
log2(double) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
log2(double) - Method in class gov.nih.mipav.model.algorithms.SIFT
log2(double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
log2(double) - Method in class gov.nih.mipav.model.structures.jama.SVD
log2(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
log2(int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
logAlgorithm - Variable in class gov.nih.mipav.view.Preferences.LogConfig
logBiasFieldControlPointLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
logBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Log transformed data.
logButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
logCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
logCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: turns log display on/off
logCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The histogram log view Check box.
logCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

The histogram log view check box.
logCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
logCheckBoxA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
logCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The histogram log view Check box.
logCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

The histogram log view check box.
logCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
logCheckBoxB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
logComms - Variable in class gov.nih.mipav.view.Preferences.LogConfig
logConfig - Static variable in class gov.nih.mipav.view.Preferences: The current logging configuration
LogConfig() - Constructor for class gov.nih.mipav.view.Preferences.LogConfig
logdet(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
logdetiid(libdt.Mat, double, int) - Method in class gov.nih.mipav.model.algorithms.libdt
logDisplayButton - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
logDisplayButton - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
logDisplayCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: private JPanel optionsPanel;.
logFile - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
logFile - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
logFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
logFileButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
logFileIO - Variable in class gov.nih.mipav.view.Preferences.LogConfig
logFilename - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
logFileName - Static variable in class gov.nih.mipav.view.LogStdStreams: The name of the output log file.
logFileText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
logFileText - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: The text of the log process to be written to file.
logFlag - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Whether to transform the histogram data by log10.
logFlag - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Whether to transform the histogram data by log10.
loggabor(double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
loggausspdf(double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
logger - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
logger - Variable in class gov.nih.mipav.model.GaussianKernelFactory
logging_callback - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
logging_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
logging_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
LoggingCallback(CeresSolver.MinimizerType, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LoggingCallback
LoggingType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.LoggingType
logicalOperation - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
logicalOperation - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
logicalOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: panels
logistic_conjugate_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
logistic_dca_update - Variable in class gov.nih.mipav.model.algorithms.SVM
logistic_loss - Variable in class gov.nih.mipav.model.algorithms.SVM
logistic_loss_derivative - Variable in class gov.nih.mipav.model.algorithms.SVM
logL(double[][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
logL_k(int, double[][], double[][][], boolean) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
LogL16Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS
LogL16Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff
LogLevel(int) - Constructor for enum gov.nih.mipav.view.Preferences.LogLevel
loglike(double[], AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
loglike(Vector<libdt.Mat>, libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
loglike_internal(libdt.Dytex, Vector<libdt.Mat>, libdt.Mat, int, libdt.Mat[], libdt.Mat, libdt.Mat[], boolean, libdt.kf_mode) - Method in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
LogLuv24Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS
LogLuv24Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff
LogLuv32Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS
LogLuv32Decompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff
logMagDisp - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Boolean telling if log magnitude display is used for the data buffer
logMagDisplay - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: If true display log10 of 1 + magnitude.
logMagDisplay - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: If true display log10 of 1 + magnitude.
logMagDisplay - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: If true display log10 of 1 + magnitude.
logMagDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Flag for displaying logMag.
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameImage: Flag indicating whether or not that the image should be displayed in Log scale.
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Flag indicating whether or not that the image should be displayed in Log scale.
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
logMagDisplay - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
logMinor - Variable in class gov.nih.mipav.view.Preferences.LogConfig
logModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Model where data is stored for the table.
logmulexp(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
logo - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
logOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: If minimum value of shrunken buffer < 1.0f, amount that must be added to make it 1.0f.
logOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
logPane - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: holds output log; updated as processed.
LOGPI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
logprop - Static variable in class gov.nih.mipav.model.algorithms.StochasticForests
LOGRANK - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
logrankScores(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
logScale - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
logScaleCheckboxX - Variable in class gov.nih.mipav.view.ViewJFrameGraph
logScaleCheckboxY - Variable in class gov.nih.mipav.view.ViewJFrameGraph
logScripting - Variable in class gov.nih.mipav.view.Preferences.LogConfig
LogStdStreams - Class in gov.nih.mipav.view: Title:
LogStdStreams(FileOutputStream, boolean) - Constructor for class gov.nih.mipav.view.LogStdStreams: Private constructor to create PrintStream an redirect standard streams.
logStream - Static variable in class gov.nih.mipav.view.LogStdStreams: The only instance of this class.
logsum(double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
logsum(double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
logsumexp(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
logsumexp(double[][], int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
logT - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace: DOCUMENT ME!
logTable - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Table holding log of statistics calculated.
logtrick(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
logWriting(File) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: convienience method to add the filename to the log-string.
LONG - gov.nih.mipav.model.file.FileDicomTagInfo.NumType: A signed or unsigned integer in 2's complement is stored in the tag's value.
LONG - gov.nih.mipav.model.file.FileSVS.Type: 32 bit unsigned, 4 bytes like C
LONG - gov.nih.mipav.model.file.FileTiff.Type: 32 bit unsigned, 4 bytes like C
LONG - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type signed long integer (64 bits per voxel).
LONG - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
LONG - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LONG - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
LONG - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type signed long integer (64 bits per voxel).
LONG_FLOAT - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
LONG_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: A string with VR "OL" is stored in the tag's value.
LONG_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type signed long.
LONG_WAIT - Variable in class gov.nih.mipav.model.algorithms.CVODES
LongComment - Static variable in class gov.nih.mipav.model.file.FileLIFF
LongDesc() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: Get the console mode long description
longitudinalAnatomicalReference - Variable in class gov.nih.mipav.model.file.FileGESigna4X
longitudinalAnatomicalReference - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
longPairs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
longToBytes(long, boolean, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: converts from long to bytes
LongToIntPair(long, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
longValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as a long.
look_nbits - Variable in class gov.nih.mipav.model.file.libjpeg.d_derived_tbl
look_sym - Variable in class gov.nih.mipav.model.file.libjpeg.d_derived_tbl
lookahead_etree - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
lookdown - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
lookdown - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
lookleft - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
lookleft - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
lookright - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
lookright - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
lookTable_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
lookup - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
lookup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
lookUp27(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Copy the source data to temporary storage in order to avoid redundant array accesses.
lookUp5(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Copy the source data to temporary storage in order to avoid redundant array accesses.
lookUp7(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Copy the source data to temporary storage in order to avoid redundant array accesses.
lookUp9(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Copy the source data to temporary storage in order to avoid redundant array accesses.
LOOLD - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Loop(LSCM.Mesh, LSCM.HalfEdge) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Loop
loopBandSpacing() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
loopBandSpacingReverse() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
loops() - Method in class gov.nih.mipav.model.algorithms.LSCM.Boundary
loops() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
LOQSB - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
lorentz(double) - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Lorentz distribution evaluated at a point with given parameters
LORENTZ_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
LORENTZ_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
lorentzFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
LORENZ_SYSTEM - Variable in class gov.nih.mipav.model.algorithms.ODE
LORENZ_SYSTEM - Variable in class gov.nih.mipav.model.algorithms.ODEEP
loss - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Regularizer value.
loss_derivativeFunction(int, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM
loss_function() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
loss_function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
loss_function_ownership - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
loss_function_ref_count_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
lossDerivativeFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
lossFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Frequency of diagnostic.
lossFunction(int, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM
LossFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LossFunction
LossFunctionArctanLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionCauchyLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionComposedLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionHuberLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionLossFunctionWrapper() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionScaledLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionSoftLOneLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionTolerantLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionTrivialLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionTukeyLoss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
LossFunctionWrapper(CeresSolver.LossFunction, CeresSolver.Ownership) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
lossy - Variable in class gov.nih.mipav.model.file.FileDicom: JPEG compression may be lossy or lossless.
lostOwnership(Clipboard, Transferable) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
LOSUB - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
LOTES - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
loThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Lower and upper threshold values used in the generation of the edge map.
loThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: DOCUMENT ME!
LOTKA_VOLTERRA_PREDATOR_PREY - Variable in class gov.nih.mipav.model.algorithms.ODE
LOTKA_VOLTERRA_PREDATOR_PREY - Variable in class gov.nih.mipav.model.algorithms.ODEEP
lotNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter.FilterType
low - Variable in class gov.nih.mipav.model.file.FileInfoCZI
low - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_node_t
LOW - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Flag indicating low priority transfer.
low_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
low_rank_inverse_hessian_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LBFGS
low0Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low0TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low1TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low2TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low3Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low3TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low4Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low4TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low5Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low5TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low6Label - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
low6TextField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
lowBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
lowBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
lowBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
lower - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2: DOCUMENT ME!
lower - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
lower - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
lower - Variable in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
lower - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
lower - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
lower - Variable in class gov.nih.mipav.model.algorithms.LsqFit
lower - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
lower_bound - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
LOWER_BOUND - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
LOWER_BOUND - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
lower_bounds_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
LOWER_LEFT - Static variable in class gov.nih.mipav.model.structures.VOIBase
LOWER_MIDDLE - Static variable in class gov.nih.mipav.model.structures.VOIBase
LOWER_RIGHT - Static variable in class gov.nih.mipav.model.structures.VOIBase
LOWER_TRIANGULAR - gov.nih.mipav.model.algorithms.CeresSolver2.StorageType
LowerBoundForParameter(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
lowerDeltaSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Slider which adjusts the lower bound of the region grow.
lowerDeltaTF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Text field containing the lower bound of the region grow.
loweredbevel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Panel Border view.
loweredbevel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
lowerIncompleteGamma - Variable in class gov.nih.mipav.model.algorithms.Gamma
lowerLeftCorner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
lowerLeftCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
lowerLeftCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
lowerLevel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
lowerLimit - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower limit of the exclusion
lowerLimitB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
lowerLimitG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
lowerLimitR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
lowerMid - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowerMidB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowerMidG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowerMidR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowerPanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
lowerRightCorner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
lowerRightCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
lowerRightCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
lowerThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: handling of intensity threshold.
lowerThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
lowestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
lowestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
lowestForbiddenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
lowestForbiddenNNDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
lowestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
lowestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
lowestForbiddenText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
lowestX - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
lowestY - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
lowestZ - Variable in class gov.nih.mipav.model.file.FileAfni: Dataset ordered bounding box in mm.
lowGain - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
lowGain - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
lowGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
lowIdx(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
lowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
lowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
lowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
lowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
lowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
LOWPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
LOWPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
LOWPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
LOWPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
LOWPASS - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
LOWPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
LOWPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
LOWPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: A lowpass filter will be applied to the source image
LOWPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
LOWPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
lowpassFilter(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
lowRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
lowRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
LowRankInverseHessian(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
lowSetFromField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSetFromFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSetFromFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSetFromFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowSliderR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
lowThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection
lowThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: DOCUMENT ME!
lowTruncated - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
lowTruncated - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
lowTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
lowValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: DOCUMENT ME!
lowX - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowX() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowXmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
lowXmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
lowY - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowY() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowYmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
lowYmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
lowZ - Variable in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowZ() - Method in class gov.nih.mipav.model.structures.CubeBounds: DOCUMENT ME!
lowZmm - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
lowZmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
LP - Static variable in class gov.nih.mipav.model.algorithms.Cephes
lps - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler
LPS - Static variable in class gov.nih.mipav.model.file.FileNRRD: A patient-based right-handed coordinate frame, with ordered basis vectors pointing towards left, posterior, and superior, respectively.
LPSOrigin - Variable in class gov.nih.mipav.model.file.FileNIFTI: The MIPAV origin value which is obtained from qoffset_x, qoffset_y, and qoffset_z when qform_code > 0 or from srow_x[3], srow_y[3], and srow_z[3] when sform_code > 0.
LPSOrigin2 - Variable in class gov.nih.mipav.model.file.FileNIFTI: When qform_code > 0 and sform_code > 0, LPSOrigin derives the MIPAV origin from the qform information and LPSOrigin2 derives MIPAV origin from the sform information.
LPST - Static variable in class gov.nih.mipav.model.file.FileNRRD: Like LPS, but with time along the fourth axis.
LQ - Static variable in class gov.nih.mipav.model.algorithms.Cephes
LQSBF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
LQSBG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
LQT - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
LQT - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
LQT2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
LQT2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
lrb() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
lrline(double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.Triangulation
lru_delete(LIBSVM.Cache.head_t) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
lru_delete(Cache.head_t) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
lru_head - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
lru_head - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
lru_insert(LIBSVM.Cache.head_t) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Cache
lru_insert(Cache.head_t) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
ls - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
LS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
LS(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
LS(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
LS2PI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
LSCM - Class in gov.nih.mipav.model.algorithms: Port of LSCM, Least squares conformal mapping This package includes the prototype code for implementing least squares conformal maps.
LSCM(String, String) - Constructor for class gov.nih.mipav.model.algorithms.LSCM
LSCM.Boundary - Class in gov.nih.mipav.model.algorithms
LSCM.Edge - Class in gov.nih.mipav.model.algorithms
LSCM.EdgeKey - Class in gov.nih.mipav.model.algorithms
LSCM.EdgeTrait - Class in gov.nih.mipav.model.algorithms
LSCM.Face - Class in gov.nih.mipav.model.algorithms
LSCM.FaceEdgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.FaceHalfedgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.FaceTrait - Class in gov.nih.mipav.model.algorithms
LSCM.FaceVertexIterator - Class in gov.nih.mipav.model.algorithms
LSCM.FormTrait - Class in gov.nih.mipav.model.algorithms
LSCM.Graph - Class in gov.nih.mipav.model.algorithms
LSCM.HalfEdge - Class in gov.nih.mipav.model.algorithms
LSCM.HalfEdgeTrait - Class in gov.nih.mipav.model.algorithms
LSCM.Homology - Class in gov.nih.mipav.model.algorithms
LSCM.Loop - Class in gov.nih.mipav.model.algorithms
LSCM.Mesh - Class in gov.nih.mipav.model.algorithms
LSCM.MeshEdgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.MeshFaceIterator - Class in gov.nih.mipav.model.algorithms
LSCM.MeshHalfEdgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.MeshVertexIterator - Class in gov.nih.mipav.model.algorithms
LSCM.Parser - Class in gov.nih.mipav.model.algorithms
LSCM.Point - Class in gov.nih.mipav.model.algorithms
LSCM.Point2 - Class in gov.nih.mipav.model.algorithms
LSCM.Token - Class in gov.nih.mipav.model.algorithms
LSCM.Trait - Class in gov.nih.mipav.model.algorithms
LSCM.Triplet - Class in gov.nih.mipav.model.algorithms
LSCM.Vertex - Class in gov.nih.mipav.model.algorithms
LSCM.VertexEdgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.VertexFaceIterator - Class in gov.nih.mipav.model.algorithms
LSCM.VertexInHalfedgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.VertexOutHalfedgeIterator - Class in gov.nih.mipav.model.algorithms
LSCM.VertexTrait - Class in gov.nih.mipav.model.algorithms
LSCM.VertexVertexIterator - Class in gov.nih.mipav.model.algorithms
lsCompleted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: DOCUMENT ME!
lsCompleted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
LseCurvatureFlow2 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the curvature flow filter for 2D images using a finite-difference-based solver for the partial differential equation:

du/dt = |grad(u)|*divergence(grad(u)/|grad(u)|)

where u(x,y,t) is the evolved image at time t, du/dt is the time derivative of u, and grad(u) is the gradient of u with respect to the spatial variables.
LseCurvatureFlow2(int, int, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseCurvatureFlow2: Creates a new LseCurvatureFlow2 object.
LseCurvatureFlow3 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the curvature flow filter for 3D images using a finite-difference-based solver for the partial differential equation:

du/dt = |grad(u)|*divergence(grad(u)/|grad(u)|)

where u(x,y,z,t) is the evolved image at time t, du/dt is the time derivative of u, and grad(u) is the gradient of u with respect to the spatial variables.
LseCurvatureFlow3(int, int, int, float, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseCurvatureFlow3: Creates a new LseCurvatureFlow3 object.
LseEvolve2 - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for level-set evolution of 2D images.
LseEvolve2(int, int, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Create a new level-set evolver for 2D images.
LseEvolve3 - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for level-set evolution of 3D images.
LseEvolve3(int, int, int, float, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Create a new level-set evolver for 3D images.
LseFastMarch - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for fast-marching methods of images.
LseFastMarch(int, float[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Create a new fast-marching object, where the speed varies per image element.
LseFastMarch(int, float, int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Create a new fast-marching object, where the speed is constant for all image elements.
LseFastMarch2 - Class in gov.nih.mipav.model.algorithms.levelset: The fast-marching method for 2D images.
LseFastMarch2(int, int, float[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Create a new fast marching object for a 2D image.
LseFastMarch2(int, int, float, int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: Create a new fast marching object for a 2D image.
LseFastMarch3 - Class in gov.nih.mipav.model.algorithms.levelset: The fast-marching method for 3D images.
LseFastMarch3(int, int, int, float[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Create a new fast marching object for a 3D image.
LseFastMarch3(int, int, int, float, int[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: Create a new fast marching object for a 3D image.
LseGaussianBlur2 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the Gaussian blur filter for 2D images using a finite-difference-based solver for the partial differential equation:

du/dt = Laplacian(u)

where u(x,y,t) is the evolved image at time t, du/dt is the time derivative of u, and Laplacian(u) = u_xx + u_yy, a sum of second-order derivatives of u.
LseGaussianBlur2(int, int, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur2: Creates a new LseGaussianBlur2 object.
LseGaussianBlur3 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the Gaussian blur filter for 3D images using a finite-difference-based solver for the partial differential equation:

du/dt = Laplacian(u)

where u(x,y,z,t) is the evolved image at time t, du/dt is the time derivative of u, and Laplacian(u) = u_xx + u_yy + u_zz, a sum of second-order derivatives of u.
LseGaussianBlur3(int, int, int, float, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur3: Creates a new LseGaussianBlur3 object.
LseGeodesicActiveContour2 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 2D images.
LseGeodesicActiveContour2(int, int, float, float, float[], boolean[], float, int, float[], float[][], float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: Create a new level-set evolver for 2D images.
LseGeodesicActiveContour3 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 3D images.
LseGeodesicActiveContour3(int, int, int, float, float, float, float[], boolean[], float, int, float[], float[][], float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: Create a new level-set evolver for 2D images.
LseGradientAnisotropic2 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the gradient anistropic curvature flow filter for 2D images using a finite-difference-based solver for the partial differential equation:

du/dt = divergence(exp(-0.5*|grad(u)|^2/(k^2*average(|grad(u)|^2))*grad(u))

where u(x,y,t) is the evolved image at time t, du/dt is the time derivative of u, and grad(u) is the gradient of u with respect to the spatial variables.
LseGradientAnisotropic2(int, int, float, float, float[], boolean[], float, int, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: Creates a new LseCurvatureFlow2 object.
LseGradientAnisotropic3 - Class in gov.nih.mipav.model.algorithms.levelset: This class implements the gradient anistropic curvature flow filter for 3D images using a finite-difference-based solver for the partial differential equation:

du/dt = divergence(exp(-0.5*|grad(u)|^2/(k^2*average(|grad(u)|^2))*grad(u))

where u(x,y,z,t) is the evolved image at time t, du/dt is the time derivative of u, and grad(u) is the gradient of u with respect to the spatial variables.
LseGradientAnisotropic3(int, int, int, float, float, float, float[], boolean[], float, int, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: Creates a new LseCurvatureFlow3 object.
LseMinHeap - Class in gov.nih.mipav.model.algorithms.levelset: A class that encapsules a min-heap data structure.
LseMinHeap(int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: Create a new min-heap data structure.
LseMinHeap.Record - Class in gov.nih.mipav.model.algorithms.levelset: Each heap record stores a numeric value, the index of the record within the records array, and a generator which acts as an identifier for the application to use to store information about how the numeric value was generated in the application.
LseParameters - Class in gov.nih.mipav.model.algorithms.levelset: This class is a simple wrapper for the parameters that occur in the level-set evolution, which is controlled by the partial differential equation:

du/dt = -a*A(x).grad(u) - b*P(x)*|grad(u)| + c*Z(x)*K(u)*|grad(u)| + d*Laplacian(u)

where u(x,t) is the evolved image at time t, du/dt is the time derivative of u, grad(u) is the gradient of u with respect to the x-variable, A(x) is the advection term with advection weight a, P(x) is the propagation term with propagation weight b, Z(x) is the curvature term with curvature weight c, K(u) is the mean curvature of level curves (in 2D) or surfaces (in 3D), and Laplacian(u) is the sum of second-order unmixed derivatives with Laplacian weight d.
LseParameters() - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseParameters: Creates a new LseParameters object.
LsePdeFilter - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for finite-difference-based solvers for partial differential equations.
LsePdeFilter(int, float[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Creates a new PDE filter object.
LsePdeFilter2 - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for finite-difference-based solvers for partial differential equations in 2D.
LsePdeFilter2(int, int, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Create a new PDE filter object for 2D images.
LsePdeFilter3 - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for finite-difference-based solvers for partial differential equations in 3D.
LsePdeFilter3(int, int, int, float, float, float, float[], boolean[], float, int) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Create a new PDE filter object for 3D images.
LseSegGeodesicActiveContour2 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 2D images based on the PDE described in LseGeodesicActiveContour2.
LseSegGeodesicActiveContour2(int, int, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: Create a geodesic-active-contour-based segmenter.
LseSegGeodesicActiveContour3 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 3D images based on the PDE described in LseGeodesicActiveContour3.
LseSegGeodesicActiveContour3(int, int, int, float, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: Create a geodesic-active-contour-based segmenter.
LseSegmenter - Class in gov.nih.mipav.model.algorithms.levelset: The abstract base class for segmentation via level-set evolution.
LseSegmenter(int, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Create a new level-set segmenter object.
LseSegShapeDetection2 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 2D images based on the PDE described in LseShapeDetection2.
LseSegShapeDetection2(int, int, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: Create a shape-detection-based segmenter.
LseSegShapeDetection3 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 3D images based on the PDE described in LseShapeDetection3.
LseSegShapeDetection3(int, int, int, float, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: Create a shape-detection-based segmenter.
LseSegThreshold2 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 2D images based on the PDE described in LseThreshold2.
LseSegThreshold2(int, int, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Create a threshold-based segmenter.
LseSegThreshold3 - Class in gov.nih.mipav.model.algorithms.levelset: A segmenter for 3D images based on the PDE described in LseThreshold3.
LseSegThreshold3(int, int, int, float, float, float, float[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Create a shape-detection-based segmenter.
LseShapeDetection2 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 2D images.
LseShapeDetection2(int, int, float, float, float[], boolean[], float, int, float[], float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection2: Create a new level-set evolver for 2D images.
LseShapeDetection3 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 3D images.
LseShapeDetection3(int, int, int, float, float, float, float[], boolean[], float, int, float[], float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection3: Create a new level-set evolver for 3D images.
LseThreshold2 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 2D images.
LseThreshold2(int, int, float, float, float[], boolean[], float, int, float[], float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: Create a new level-set evolver for 2D images.
LseThreshold3 - Class in gov.nih.mipav.model.algorithms.levelset: A level-set evolver for 3D images.
LseThreshold3(int, int, int, float, float, float, float[], boolean[], float, int, float[], float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: Create a new level-set evolver for 2D images.
lsImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
LSM - Static variable in class gov.nih.mipav.model.file.FileUtility: Used by the Zeiss LSM 510 Dataserver. extension: .lsm
LSM_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Used by the Zeiss LSM 510 Dataserver.
LSMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Algorithm to run from this dialog.
lsMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
LSMDataConversion(FileInfoLSM, FileInfoImageXML) - Method in class gov.nih.mipav.model.file.FileIO: Provides a method of conversion from FileInfoLSM to FileInfoImageXML, by filling the FileInfoImageXML with sets of chosen image information.
LSMDataType - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
LSMDataType2 - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
lsPerformed - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
LsqFit - Class in gov.nih.mipav.model.algorithms: LsqFit.jl is licensed under the MIT License: Returns the argmin over x of `sum(f(x).^2)` using the Levenberg-Marquardt algorithm, and an estimate of the Jacobian of `f` at x.
LsqFit() - Constructor for class gov.nih.mipav.model.algorithms.LsqFit: To run LsqFit() use: boolean fullTest = true; if (fullTest) { FitAll fa = new FitAll(); return; } class FitAll extends LsqFit { public FitAll() { // nPoints data points, 3 coefficients, and exponential fitting super(); } public void fitToFunction(double[] x, double[] residuals) { return; } public void fitToJacobian(double[] x, double[][] jacobian) { return; } public void fitToHessian(double[] x, double[][][] hessian) { // n,n,m hessian return; } }
LsqFit(int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.LsqFit
LSQR - Class in gov.nih.mipav.model.algorithms
LSQR() - Constructor for class gov.nih.mipav.model.algorithms.LSQR
LSQR(LSQR.lsqr_solver_ez, int, int, double, boolean, double[], double[], double[], double[], double[], double, double, double, int, RandomAccessFile, int[], int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
lsqr__test() - Method in class gov.nih.mipav.model.algorithms.LSQR
lsqr_solver_ez() - Constructor for class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
lsqr_solver_ez(int, int, int[], int[], double[], double, double, double, int, String) - Constructor for class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
LSQR.lsqr_solver_ez - Class in gov.nih.mipav.model.algorithms
lsqrt(int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
lsqrtest_ez() - Method in class gov.nih.mipav.model.algorithms.LSQR
lst - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqawfe number of subintervals needed for the integration.
lst - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqawfe number of subintervals needed for the integration.
lstp(LSQR.lsqr_solver_ez, int, int, int, int, int, int, double, double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
lstsqr(double[], int, boolean, int, int, int, int, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
lsub - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
LSUB - gov.nih.mipav.model.structures.jama.SuperLU.MemType
LSUBC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
lsunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
lsunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
lsvmin(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
lt - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
lt(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Tests whether this value is less than another DoubleDouble value.
Lt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
Lt(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise less than.
Lt(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Less Than - compares a double and a vector.
Lt(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise less than.
Lt(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Less Than - compares a vector and a vector.
LT - gov.nih.mipav.model.file.FileDicomTagInfo.VR
LText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
ltsqar(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
LU_space_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.LU_space_t
LU_stack_t() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t
lu1DCP(double[][], int, int, int, double, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1DCP(DoubleDouble[][], int, int, int, DoubleDouble, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1DPP(double[][], int, int, int, double, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1DPP(DoubleDouble[][], int, int, int, DoubleDouble, int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1fac(int, int, int, int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1fac(int, int, int, int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1fad(int, int, int, int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[], int, double[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1fad(int, int, int, int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[], int, DoubleDouble[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1ful(int, int, int, int, int, boolean, int, int, int, int, int[], int[], int[], boolean, double, double[], int, int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1ful(int, int, int, int, int, boolean, int, int, int, int, int[], int[], int[], boolean, DoubleDouble, DoubleDouble[], int, int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1gau(int, int, int, int, double, int, int, int[], int, int, int, int[], int[], int[], int[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1gau(int, int, int, int, DoubleDouble, int, int, int[], int, int, int, int[], int[], int[], int[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1mar(int, int, int, int, boolean, double, double, int, int, int[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1mar(int, int, int, int, boolean, DoubleDouble, DoubleDouble, int, int, int[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1mRP(int, int, int, int, double, int, int, int[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1mRP(int, int, int, int, DoubleDouble, int, int, int[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1mSP(int, int, int, int, double, int, int[], int[], int[], double[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1mSP(int, int, int, int, DoubleDouble, int, int[], int[], int[], DoubleDouble[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1mxc(int, int, int[], double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1mxc(int, int, int[], DoubleDouble[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1mxr(int, int, int, int, int, int, double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1mxr(int, int, int, int, int, int, DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1or1(int, int, int, int, double, double[], int[], int[], int[], int[], double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1or1(int, int, int, int, DoubleDouble, DoubleDouble[], int[], int[], int[], int[], DoubleDouble[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1or2(int, int, int, double[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1or2(int, int, int, DoubleDouble[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1or3(int, int, int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1or3(int, int, int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1or4(int, int, int, int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1or4(int, int, int, int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1pen(int, int, int, int, int[], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1pen(int, int, int, int, int[], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int, int) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1pq1(int, int, int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1pq1(int, int, int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1pq2(int, int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1pq2(int, int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1pq3(int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1pq3(int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1rec(int, boolean, int[], int[], int, double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1rec(int, boolean, int[], int[], int, DoubleDouble[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu1slk(int, int, int, int[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu1slk(int, int, int, int[], int[], DoubleDouble[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6chk(int, int, int, double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6chk(int, int, int, DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6L(int[], int, int, double[], int, int[], double[], double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6L(int[], int, int, DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6LD(int[], int, int, int, double[], int, int[], double[], double[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6LD(int[], int, int, int, DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6Lt(int[], int, int, double[], int, int[], double[], double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6Lt(int[], int, int, DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6mul(int, int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6mul(int, int, int, DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6prt(int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6sol(int, int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6sol(int, int, int, DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6U(int[], int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6U(int[], int, int, DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu6Ut(int[], int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu6Ut(int[], int, int, DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7add(int, int, int, double[], int, int[], double[], int[], int[], int[], int, double[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7add(int, int, int, DoubleDouble[], int, int[], DoubleDouble[], int[], int[], int[], int, DoubleDouble[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7cyc(int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7cyc(int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7elm(int, int, int, double[], int, int[], double[], int[], int, int[], int, double[], int[], int[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7elm(int, int, int, DoubleDouble[], int, int[], DoubleDouble[], int[], int, int[], int, DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7for(int, int, int, int, int, int[], double[], int[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7for(int, int, int, int, int, int[], DoubleDouble[], int[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7rnk(int, int, int, int, double[], int[], int[], int[], int[], double[], int[], int[], int[], int[], int[], int[], int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7rnk(int, int, int, int, DoubleDouble[], int[], int[], int[], int[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu7zap(int, int, int, int[], int, int[], int[], int, double[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu7zap(int, int, int, int[], int, int[], int[], int, DoubleDouble[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lu8rpc(int, int, int, int, int, double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lu8rpc(int, int, int, int, int, DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lubksb(double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
luchek(int, int, int, double[][], int[], double[], double[], double[], double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
luchek(int, int, int, DoubleDouble[][], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
ludcmp(double[][], int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ludlAuxWheel1 - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
ludlMainWheel1Array - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
LUFactFlops(SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
luinit(int, int, int, double[][], int[], int, int[], double[], int[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
luinit(int, int, int, DoubleDouble[][], int[], int, int[], DoubleDouble[], int[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
LumaBlue - Variable in class gov.nih.mipav.model.file.FileSVS
LumaBlue - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
LumaBlue - Variable in class gov.nih.mipav.model.file.FileTiff
LumaBlue - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
LumaGreen - Variable in class gov.nih.mipav.model.file.FileSVS
LumaGreen - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
LumaGreen - Variable in class gov.nih.mipav.model.file.FileTiff
LumaGreen - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
LumaRed - Variable in class gov.nih.mipav.model.file.FileSVS
LumaRed - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
LumaRed - Variable in class gov.nih.mipav.model.file.FileTiff
LumaRed - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
luminanceAdaptationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: DOCUMENT ME!
lungLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
lungLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
lungLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
lungMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
lungMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
lungMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
lungMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
lungMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
lungMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
LUSOL - Class in gov.nih.mipav.model.structures.jama: LUSOL maintains LU factors of a square or rectangular sparse matrix.
LUSOL() - Constructor for class gov.nih.mipav.model.structures.jama.LUSOL
LUSOLEP - Class in gov.nih.mipav.model.structures.jama: LUSOL maintains LU factors of a square or rectangular sparse matrix.
LUSOLEP() - Constructor for class gov.nih.mipav.model.structures.jama.LUSOLEP
LUSolveFlops(SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
lusup - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
LUSUP - gov.nih.mipav.model.structures.jama.SuperLU.MemType
lusupdc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
lut - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The (grayscale) LUT to save.
lut - Variable in class gov.nih.mipav.model.file.FileInfoBase: ModelLUT associated with fileinfo
lut - Variable in class gov.nih.mipav.model.file.FileInfoDicom: LUT for pre-processing of dicom file
lut - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: LUT table renference.
lut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
lut - Variable in class gov.nih.mipav.view.ViewJComponentHistoLUT: DOCUMENT ME!
lut - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The grayscale lookup table for the image.
LUT - gov.nih.mipav.view.Preferences.DefaultDisplay: Lookuptable table and associated transfer function
LUT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileBMP: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileImageXML: Lookup Table associated with the file (grayscale).
LUT - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileIO: If a LUT is to be saved with the image it is stored here.
LUT - Variable in class gov.nih.mipav.model.file.FileJSON: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileLIFF: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileMATLAB: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileOME: The image's lut.
LUT - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.model.file.FileZVI: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.view.dialogs.JDialogCT
LUT - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Reference to the LUT used to display the image.
LUT - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Reference to the LUT used to display the image.
LUT - Variable in class gov.nih.mipav.view.JPanelHistogram: input LUT, either ModelLUT or ModelRGB
LUT - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Holds current LUT which dictates colors for vertices.
LUT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
LUT - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Look-Up-Table Files (*.lut).
LUT - Variable in class gov.nih.mipav.view.ViewJComponentLUT: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
LUT - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
lut_ctxno_sc - Variable in class gov.nih.mipav.model.file.FileJPEG2000
lut_ctxno_zc - Variable in class gov.nih.mipav.model.file.FileJPEG2000
lut_spb - Variable in class gov.nih.mipav.model.file.FileJPEG2000
LUT2 - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.JFrameHistogram: lut a
LUTa - Variable in class gov.nih.mipav.view.PatientSlice: ModelLUT lookup table for gray-scale ModelImages: imageA lut.
LUTa - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reference to LUT for image A.
LUTa - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: LUT that dictates how the vertices of the quad mesh are colored.
LUTa - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Lookup table for image.
LUTa - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Lookup table for image A.
LUTa - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Lookup table for (intensity) image A.
LUTa - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Lookup table of the imageA, B.
LUTa - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Model LUT A.
LUTa - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: LUT of input image *
LUTa - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
LUTa - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Lookup table for image A.
LUTa - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to LUT for image A and to the default LUT for image A.
LUTa - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
LUTa - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lutAdjustCheckboxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

LutA table adjust check box.
lutAdjustCheckboxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

LutB table adjust check box.
lutAdjustCheckboxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME
lutB - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: lutB
lutB - Static variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.view.JFrameHistogram: lut b
LUTb - Variable in class gov.nih.mipav.view.PatientSlice: ModelLUT lookup table for gray-scale ModelImages: imageB lut.
LUTb - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reference to LUT for image B.
LUTb - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Lookup table for image A.
LUTb - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Lookup table for (intensity) image B.
LUTb - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Lookup table of the imageA, B.
LUTb - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Model LUT B.
LUTb - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
LUTb - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Lookup table for image B.
LUTb - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
LUTb - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to LUT for image B and to the default LUT for image B.
LUTb - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
lutBuffer - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
lutBufferRemapped - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
lutBufferRemapped - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: DOCUMENT ME!
lutBufferRemapped - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Used to remap the LUT appropriately.
lutBufferRemappedDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
lutBufferRemappedDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
LUTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
LUTdest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: LUTa - lookup table for destImage.
LUTdest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: LUTa - lookup table for destImage.
LUTdest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: The LUT for the 2D histogram.
LUTdest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The LUT for the 2D histogram.
LUTDims - Variable in class gov.nih.mipav.view.ViewJComponentLUT: DOCUMENT ME!
LUTDims - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
lutest(int, int, int, int, int, int[], int[], double[][], double[], double[], double[], double[], double[], int, int[], double[], double[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lutest(int, int, int, int, int, int[], int[], DoubleDouble[][], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int, int[], DoubleDouble[], DoubleDouble[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lutest_driver() - Method in class gov.nih.mipav.model.structures.jama.LUSOL
lutest_driver() - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
lutFileName - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The file name of the LUT data file.
LUTIndex - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The LUT index used when chaning the LUT color by clicking on the ViewJComponentLUT.
lutIndexBuffer - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
lutIndexBuffer - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB: DOCUMENT ME!
lutIndexBuffer - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
LUTIndexBuffer - Variable in class gov.nih.mipav.view.ViewJComponentLUT: DOCUMENT ME!
LUTIndexBuffer - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
lutKind - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LUTOffset - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
LUTOffset - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
LUTOffset - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
lutPanel - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
lutRecorder - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: LUT recorder.
LUTS - Static variable in class gov.nih.mipav.model.file.FileSVS
LUTS - Static variable in class gov.nih.mipav.model.file.FileTiff
lutTablePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: LUT table panel.
lutTag - Static variable in class gov.nih.mipav.model.file.FileHistoLUT: Tag marking the beginning of a LUT data file.
lutVector - Variable in class gov.nih.mipav.model.file.FileImageXML: Vector to store LUT values when reading xml header.
LUV_data - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
LUV_threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
LUValue(float, float, float) - Constructor for class gov.nih.mipav.model.file.FileImageXML.LUValue: Creates a new LUValue object.
LUValue(float, float, float, float) - Constructor for class gov.nih.mipav.model.file.FileImageXML.LUValue: Creates a new LUValue object.
LUVtoRGB(float[], int, byte[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
lvec_print(int, int[], char[]) - Method in class gov.nih.mipav.model.structures.Triangulation
lwork - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
lWorkItems - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions
lwrk - Variable in class gov.nih.mipav.model.algorithms.curfit
LZE(SuperLU.doublecomplex[], SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
LZERES(String, char, int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[][], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
LZW - Static variable in class gov.nih.mipav.model.file.FileCZI
lzwCompression - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
lzwCompression - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
lzwCompression - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
lzwDecoder - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
LZWDecompresser(byte[], int, byte[], int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS: Method to decode LZW compressed data.
LZWDecompresser(byte[], int, byte[], int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff: Method to decode LZW compressed data.

M

m - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
m - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
m - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
m - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
m - Variable in class gov.nih.mipav.model.algorithms.CeresSolver: integer scalar containing the number of data points.
m - Variable in class gov.nih.mipav.model.algorithms.curev
m - Variable in class gov.nih.mipav.model.algorithms.curfit
m - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
m - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexOptions: < dimension of the state space, x_t.
m - Variable in class gov.nih.mipav.model.algorithms.Lmmin: m is a positive integer input variable set to the number of functions.
m - Variable in class gov.nih.mipav.model.algorithms.LsqFit: integer scalar containing the number of data points.
m - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
m - Variable in class gov.nih.mipav.model.algorithms.splev
m - Variable in class gov.nih.mipav.model.algorithms.sproot
m - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
m - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Row and column dimensions.
m - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark
m - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark
M - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
M - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
M - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
M - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
M - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
M - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
M - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
M - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
M - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
m_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
m_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
m_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
m_3dbufferMap_float - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
m_3dbufferMap_int - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
m_4dbufferMap_float - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
m_4dbufferMap_int - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
m_aaaasEncode - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: encoding of voxels based on transparent runs.
m_aaabMask - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Voxels may be masked out so that the PDE solver does not process them.
m_aaafDst - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Successive iterations of the PDE solver toggle between two buffers.
m_aaafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: The feature image to control the segmentation.
m_aaafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection3: The feature image to control the segmentation.
m_aaafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: The feature image to control the segmentation.
m_aaafPropagation - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: The propagation image to control the segmentation.
m_aaafSrc - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Successive iterations of the PDE solver toggle between two buffers.
m_aaaiConnectivity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The array of indexed triangle array coordinate indices.
m_aaaiOrderedGroupChildIndexOrder - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: This contains the childIndexOrder arrays for the axis' OrderedGroup, one for each possible way to slice the volume (by axis and by direction).
m_aaakAdvection - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: The advection field to control the segmentation.
m_aaakControlPoint - Variable in class gov.nih.mipav.model.structures.BSplineLattice3Df: DOCUMENT ME!
m_aaasVolumeEncode - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aabMask - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Pixels may be masked out so that the PDE solver does not process them.
m_aabReference - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: For masking, set to true if the reference image is written into the same location:.
m_aabReferenceBackup - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: backup:.
m_aafBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aafBreakPoints - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The aray of points (defined in time) where the curvature of the spline is highest.
m_aafClipData - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: stores t=clip plane information:
m_aafD2 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The second-order derivatives of the current pixel.
m_aafD2 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The second-order derivatives of the current pixel.
m_aafDst - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Successive iterations of the PDE solver toggle between two buffers.
m_aafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: The feature image to control the segmentation.
m_aafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection2: The feature image to control the segmentation.
m_aafFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: The feature image to control the segmentation.
m_aafLight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_aafM - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aafMaxDist - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Approximate "width" of the tube at the sample points on each curve.
m_aafPropagation - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: The propagation image to control the segmentation.
m_aafRelativeLengths - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Values that are used in multiple functions, are stored so that they are calculated only once.
m_aafSrc - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Successive iterations of the PDE solver toggle between two buffers.
m_aaiColorSwap - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Axis labels color assignments.
m_aaiColorSwap - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Axis labels color assignments.
m_aaiIndex - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: permutations that just store voxel indices.
m_aaiNumTris - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The number of triangles in each sub-mesh.
m_aakAdvection - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: The advection field to control the segmentation.
m_aakAxisFiles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Orientation cube texture names:
m_aakColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Set of colors used to draw the axis labels.
m_aakColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Set of colors used to draw the axis labels.
m_aakControlPoint - Variable in class gov.nih.mipav.model.structures.BSplineLattice2Df: DOCUMENT ME!
m_aakCurvePos - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Positions on the sample curve.
m_aakDWIList - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: List of file names for the Diffusion Weighted Images, from the .path file.
m_aakDWIList - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: List of file names for the Diffusion Weighted Images, from the .path *
m_aakDWIList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_aakDWIList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: List of file names for the Diffusion Weighted Images, from the .path file.
m_aakTangent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Tangent vectors for each position on the sample curve.
m_aasSliceEncode - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_abAxisFlip - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: ModelImage axis flip.
m_abAxisFlip - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: ModelImage axis flip.
m_abAxisFlip - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_abDisplayPolyline - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: enables/disables displaying clip planes
m_abInitLevelSet - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_abInitLiveWire - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_abMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: face mask to keep track of which voxels are in the face:.
m_abMask - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Masks to indicate which image elements are to be processed by the segmenter.
m_abRemoveTris - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_abRemoveTris - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: List of triangles to remove.
m_abShowBoundingBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Displaying each bounding-box:
m_abShowPlanes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Displaying each plane:
m_abSignedDistanceMask - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The mask that indicates which image elements have been included in the signed distance transform.
m_abSolid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
m_abVisited - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Which tensor nodes are already on the fiber bundle tract
m_acImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: DOCUMENT ME!
m_acImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: DOCUMENT ME!
m_acImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_acImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_acImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: DOCUMENT ME!
m_acImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: DOCUMENT ME!
m_acImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: DOCUMENT ME!
m_acImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_acImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_acImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: byte and alpha channels for the image.
m_acImageG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: DOCUMENT ME!
m_acImageG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_acImageG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_acImageI - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: intensity channel computed for combination of RGB channels.
m_acImageI - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: intensity channel computed for combination of RGB channels.
m_acImageR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: color channels of the image (R = red, G = green, B = blue, A = alpha).
m_acImageR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_acImageR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: color channels of the image (R = red, G = green, B = blue, A = alpha).
m_adBinSum1 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Sum of the intensities in bin.
m_adBinSum2 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Sum of the squared intensities in bin.
m_adCos - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_adCos - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_adCos - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_adSin - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_adSin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_adSin - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_afA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_afABBlendParam - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_afAdvection - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The advection for the current pixel.
m_afAdvection - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The advection for the current pixel.
m_afArbEquation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Arbitrary clip plane equation:
m_afArbEquationInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_afAverages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_afAvrConvexity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_afAvrConvexity - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_afB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_afBlendParam - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The blurred curvature flow image (intermediate image).
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The blurred curvature flow image (intermediate image).
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The blurred curvature flow image (intermediate image).
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The blurred curvature flow image (intermediate image).
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The blurred curvature flow image (intermediate image).
m_afBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The blurred curvature flow image (intermediate image).
m_afBoundarySampleDistMin - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Array of Euclidean distances to the nearest boundary for each inside voluem sample.
m_afBracket - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_afBracketB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_afBranchPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: List of branch points (normalized path distances where one or more branches starts).
m_afBranchPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: List of branch points (normalized path distances where one or more branches starts).
m_afBranchPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: List of branch points (normalized path distances where one or more branches starts).
m_afClipAll - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: Turn clipping on/off per-axis aligned clip plane, eye-clip planes and arbitrary plane.
m_afClipOBBAxis0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afClipOBBAxis1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afClipOBBAxis2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afClipOBBExtent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afClipSphereCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afClipSphereScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afCoeff - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: the coeffficients of the approximating quadratic equation.
m_afCoeff - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
m_afCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Stores curvature information of the surface.
m_afCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_afCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The curvature flow image (intermediate image).
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The curvature flow image (intermediate image).
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The curvature flow image (intermediate image).
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The curvature flow image (intermediate image).
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The curvature flow image (intermediate image).
m_afCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The curvature flow image (intermediate image).
m_afD1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The first-order derivatives of the current pixel.
m_afD1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The first-order derivatives of the current pixel.
m_afD1Bwd - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Backward finite-difference approximations to the first-order derivatives of the current pixel.
m_afD1Bwd - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Backward finite-difference approximations to the first-order derivatives of the current pixel.
m_afD1Fwd - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: Forward finite-difference approximations to the first-order derivatives of the current pixel.
m_afD1Fwd - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: Forward finite-difference approximations to the first-order derivatives of the current pixel.
m_afData - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The image elements.
m_afData - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_afDiagonal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: DOCUMENT ME!
m_afDistanceNeighbors27 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Array of exact Euclidean distances (in sample coordinates) to each of the 26-connected neighbors corresponding to the relative indexes in m_aiOffsetNeighbors27 array.
m_afDoClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: Turn clipping on/off.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The feature image.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The feature image.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The feature image.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The feature image.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The feature image.
m_afFeature - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The feature image.
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afGradMagBlurCurvFlow - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The gradient magnitude of the blurred curvature flow image (intermediate image).
m_afImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The 3D MRI image stored as a 1D array.
m_afImageErr - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Current error at each sample (registered-target).
m_afInterB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_afInterB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: intermediate 2D image.
m_afInterG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_afInterI - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: DOCUMENT ME!
m_afInterR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: intermediate 2D images.
m_afInvSpeed - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: The inverse speeds associated with the image elements.
m_afJointHisto - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
m_afLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Triangle edge length.
m_afLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_afLength - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_afLutIn - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: DOCUMENT ME!
m_afLutIn - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: DOCUMENT ME!
m_afLutOut - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: DOCUMENT ME!
m_afLutOut - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: DOCUMENT ME!
m_afLutSlope - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: DOCUMENT ME!
m_afLutSlope - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: DOCUMENT ME!
m_afMask - Variable in class gov.nih.mipav.view.PatientSlice: Mask data when a surface is loaded into the SurfaceRender, for blending with the PlaneRender image.
m_afMaxCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_afMeanCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_afMeanCurvature - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_afMeanCurvatures - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Array of mean curvature values at each vertex.
m_afMinCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_afMinMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect: stores the gradient magnitude filter on/off value:
m_afNewResolutions - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_afNormColor - Variable in class gov.nih.mipav.view.PatientSlice: Color normalization factor:.
m_afOffset - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: for resampling a slice.
m_afPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_afPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_afRealDistanceNeighbors27 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Array of exact Euclidean distances to each of the 26-connected neighbors scaled by the size of each sample along each axis and corresponding to the relative indexes in m_aiOffsetNeighbors27 array.
m_afResolutions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_afResolutions - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_afScreenResolutions - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Sets the correct resolutions for the image that is created by captureImage.
m_afShear - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: for resampling a slice.
m_afSignedDistance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The signed distance transform computed from the coarse-level region grown by the fast marching method.
m_afStartLocation - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
m_afStartLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Surface 3D location
m_afStartPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_afStartPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_afTime - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: The times at which the image elements are visited by moving boundaries.
m_afUnitDirections - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_afUnitDirections - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_afVolumeMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_afX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Previous snake results (X-position):.
m_afXWin - Variable in class gov.nih.mipav.view.WindowLevel: Member variables used to adjust the window and level (contrast and brightness) by dragging with the right-mouse button:.
m_afY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Previous snake results (Y-position):.
m_afYWin - Variable in class gov.nih.mipav.view.WindowLevel: Member variables used to adjust the window and level (contrast and brightness) by dragging with the right-mouse button:.
m_aiAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: parameters for finding and bluring the face:.
m_aiAxisOrder - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: ModelImage axis orientation.
m_aiAxisOrder - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: ModelImage axis orientation.
m_aiAxisOrder - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Local orientation of the displayed image, used in the volume renderer and tri-planar views.
m_aiBinReg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Bins used to hold the histograms.
m_aiBinRegTrg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: DOCUMENT ME!
m_aiBinSum0 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Bins used to hold cummulative summations for computing the variances.
m_aiBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Parallel viewing model.
m_aiBoundary - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The boundary of the segmented result from region growing.
m_aiBranchIndexUnvisitedMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_aiBranchIndexUnvisitedMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: This is the range of path samples for each branch that are unvisited.
m_aiBranchIndexUnvisitedMin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the range of path samples for each branch that are unvisited.
m_aiBranchIndexUnvisitedMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: This is the range of path samples for each branch that are unvisited.
m_aiClipMax - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: for clipping.
m_aiClipMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: for clipping.
m_aiColorMap - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: DOCUMENT ME!
m_aiColorMap - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: DOCUMENT ME!
m_aiColorSculpt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: The sculpt region color.
m_aiCompositeImageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer for holding volume texture composite values for image A.
m_aiConnect - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Surface triangle connection.
m_aiConnect - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_aiConnect - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: DOCUMENT ME!
m_aiConnect - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_aiConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_aiConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_aiConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_aiCurrentI - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aiDirection - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
m_aiDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Surface direction
m_aiElement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The array storage for the set.
m_aiElement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The array storage for the set.
m_aiElement - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The array storage for the set.
m_aiElement - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The array storage for the set.
m_aiEndIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_aiEndIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The indices of the triangle containing the end of the new line.
m_aiExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_aiExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_aiFirstIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_aiFirstIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The indices of the triangle containing the first point on the new line.
m_aiImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The 3D MRI image stored as a 1D array.
m_aiImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The 3D MRI image stored as a 1D array.
m_aiImageA_backup - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Backup of the data for undo:.
m_aiImageA_backup - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Backup of the data for undo:.
m_aiImageB_backup - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: ImageB backup buffer.
m_aiImageB_backup - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_aiImageBin - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Image corresponding to the samples in the target image which identifies to which bin the sample belongs.
m_aiImageBinReg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Image corresponding to the samples in the registered source image which identifies to which bin the sample belongs.
m_aiImageBinTrg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Image corresponding to the samples in the target image which identifies to which bin the sample belongs.
m_aiIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Triangle mesh connectivity (index) array.
m_aiIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: DOCUMENT ME!
m_aiIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_aiIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: vertices array.
m_aiIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: vertices array.
m_aiIndexShift - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_aiIndexShift - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: For shifting the triangle indices after removing triangles from the mesh.
m_aiIndexValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_aiIndices - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Array of triangle vertex connectivity.
m_aiInterC - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: intermediate image indicating that the number of times each pixels is processed.
m_aiInterior - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The interior of the segmented result from region growing.
m_aiLightScale - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light scale factor array.
m_aiLightScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light scale factor array.
m_aiLocalImageExtents - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The image dimensions in x,y,z:.
m_aiLocalImageExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: The image dimensions in x,y,z:.
m_aiLocalImageExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: The image dimensions in x,y,z:.
m_aiLocalImageExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: The image extents in the local orientation.
m_aiLocalImageFactors - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: The image dimension factors in x,y,z:.
m_aiMapIndexToJPanelLightsIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The index of the lights in JPanelLights is different from the order maintained here.
m_aiMapJPanelLightsIndexToIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The index of the lights in JPanelLights is different from the order maintained here.
m_aiMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Brain segmenation mask.
m_aiMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: object mask creation.
m_aiMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_aiMatrixEntries - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: keeps track of unique entries in the BMatrix
m_aiMatrixEntries - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: keeps track of unique entries in the BMatrix
m_aiMatrixEntries - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_aiMatrixEntries - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: keeps track of unique entries in the BMatrix
m_aiMeshConnectivity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_aiNewConnect - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_aiNewExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_aiNumBreakPoints - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The number of break points on the spline.
m_aiOffsetNeighbors27 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Array of 27 index offsets used by the getOffsetXYZNeighbors27 method.
m_aiOffsetNeighborsVoxel - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Array of 8 index offsets used by the getIndexNeighborsVoxel method.
m_aiPaintBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: buffer used for image to draw to display.
m_aiPreviousStartIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_aiPreviousStartIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The indices of the triangle containing the previous start point.
m_aiRGBIndexBufferA - Variable in class gov.nih.mipav.view.PatientSlice: lookup table for mapping ModelImage data values to color for imageA:.
m_aiRGBIndexBufferB - Variable in class gov.nih.mipav.view.PatientSlice: lookup table for mapping ModelImage data values to color for imageB:.
m_aiRImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Final rendered image (24-bit RGB stored in int). 2D: m_iRBound-by-m_iRBound image
m_aiSliceBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aiSliceMax - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aiSliceMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_aiStartIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: The index values in the Vertex array for the triangle that the Start, First, and End points fall in, if they are inside a triangle and not on a triangle vertex:.
m_aiStartIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The indices of the triangle containing the start of the new line.
m_aiTriIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_aiTriIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Point indices of the puncture triangle.
m_aiUnits - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_aiUnits - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_aiVOrdered - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_aiVPermute - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_aiXPoints - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Mouse positions in x,y for drawing the sculpt region:.
m_aiXPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Mouse positions in x,y for drawing the sculpt region:.
m_aiYPoints - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_aiYPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Mouse positions in x,y for drawing the sculpt region:.
m_akAdjacent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Surface adjacentcy list.
m_akAdjacent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akAdjacent - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_akAdjacent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_akAxis - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: For track ball rotation.
m_akBackupBorders - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup shape for Undo:.
m_akBackupColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Backup of the per-vertex colors.
m_akBackupImages - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup Image for Undo:.
m_akBackupPolygons - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup shape for Undo:.
m_akBackupTG - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup Transform for Undo:.
m_akBorderShapes - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Reference to the border shape data structure for changing the color based on which image is selected:.
m_akBoundingBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox: The bounding box Polyline array.
m_akBoundingBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: The three plane bounding-box Polylines.
m_akBoundingBoxEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox: The ShaderEffect for the bounding box.
m_akBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Bounding box for a group of selected VOIs for group-move.
m_akBranchChoice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: When a branch point along the current branch is reached, this array is filled with the possible BranchState instances that the user can select from for following.
m_akBranchChoice - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: When a branch point along the current branch is reached, this array is filled with the possible BranchState instances that the user can select from for following.
m_akBranchChoice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_akBranchState - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Identifies the current state of traversing the current branch.
m_akBranchState - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Identifies the current state of traversing the current branch.
m_akBranchState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_akClip - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: Axis-aligned clip plane shader parameter names:
m_akCLoc - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Camera Locations, for rendering the different Axial, Sagittal and Coronal views.
m_akCLoc - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Camera Locations, for rendering the different Axial, Sagittal and Coronal views.
m_akCollapse2D - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_akCollapseColumns - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_akCollapseRows - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_akColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_akColorBackup - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Original surface color for undoing the pseudo-color curvature map.
m_akColors - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Triangle mesh colors (may be null).
m_akColors - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Set of colors used to draw the X and Y Bars and the Z box:.
m_akColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: triangle color array.
m_akColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: Set of colors used to draw the X and Y Bars and the Z box:.
m_akCoordinates - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Array of vertex coordinates.
m_akCoordinates - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: triangle index coordinate array.
m_akCoords - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Camera Direction, UP, and Right vectors, for rendering the different Axial, Sagittal and Coronal views.
m_akCoords - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Camera Direction, UP, and Right vectors, for rendering the different Axial, Sagittal and Coronal views.
m_akCurvePosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The array of possible curves to use for segmenting the mesh.
m_akCylinder - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: projection of sphere onto cylinder.
m_akCylinder - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: projection of sphere onto cylinder.
m_akEdge - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_akEdge - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_akEdgeList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Data members used in Dijkstra's search.
m_akEdgeList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Data members used in Dijkstra's search.
m_akGeodesicNodes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Contains geodesic display components.
m_akGradientMagMinMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: 3D sub-images (4D data)
m_akHeap - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_akHistoTCoord - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture coordinates for displaying histogram in 2D
m_akImage - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Image buffer for each image slice.
m_akImageComponent - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Image component 2D.
m_akImageMinMax - Variable in class gov.nih.mipav.model.structures.VOIBase: Current contour bounding-box.
m_akImageReduceEntropy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_akImages - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Reference to the model images:.
m_akImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: ImageA and ImageB
m_akImageTransforms - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Reference and tile image transformations:.
m_akLevWidget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_akLightArrows - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Arrows representing light bulb directions.
m_akLightBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent of each light bulb.
m_akLightBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Parent of each light bulb.
m_akLightMaterials - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Material properties for each light bulb.
m_akLightMaterials - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Material properties for each light bulb.
m_akLights - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: The structure for the light bulbs.
m_akLights - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The description of the lights so they can be duplicated in the "Advanced Material Properties" dialog:.
m_akLights - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Lights from JPanelLight
m_akLights - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: The structure for the light bulbs.
m_akLights - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_akLightsModel - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of software lights in model coordinates.
m_akLightSpheres - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Shapes representing light bulbs.
m_akLightSpheres - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Shapes representing light bulbs.
m_akLightsWorldDirection - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of world coordinate vectors for software world lights.
m_akLightsWorldDirectionInModelSpace - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of model coordinate vectors for software world lights corresponding to the entries in the m_akLightsWorldDirection array.
m_akLightsWorldInModelSpace - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of software lights converted from world coordinates to model coordinates.
m_akLightsWorldPosition - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of world coordinate positions for software world lights.
m_akLightsWorldPositionInModelSpace - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Array of model coordinate positions for software world lights corresponding to the entries in the m_akLightsWorldPosition array.
m_akLightTransformGroup - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent transform group.
m_akLightTransformGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Parent transform group.
m_akMaterialPreset - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Pre-defined materials
m_akMaterialPreset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Pre-defined materials
m_akMaxDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_akMinDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_akModelLights - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: General light array.
m_akNamesCompatibleTargetImages - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Contains names of compatible target images that can be registered to the input source image for 2D/3D registration.
m_akNegGradient - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The negative of the gradient of the image is used for advection.
m_akNegGradient - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The negative of the gradient of the image is used for advection.
m_akNewVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_akNormal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_akNormal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_akNormal - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: unit-length normal vectors at the voxels.
m_akNormals - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Triangle mesh normals (may be null).
m_akNormals - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Array of vertex normals.
m_akNormals - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: triangle normal array.
m_akNormalsImageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Buffer for holding the most recently computed normal vectors of image A.
m_akOffset - Variable in class gov.nih.mipav.view.PatientSlice: Color offset factor:.
m_akOffsetXYZNeighbors27 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Array of 27 index offsets used by the getIndexNeighbors27 method.
m_akOrderedGroupNodeSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: The contents of each slice that can be rendered will be contained in an OrderedGroup node.
m_akOrientationCube - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Orientation cube geometry:
m_akPickColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Colors for the picked points:.
m_akPickColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Colors for the picked points:.
m_akPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Conformal mapping to a plane.
m_akPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Conformal mapping to a plane.
m_akPlaneEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: ShaderEffects for the planes.
m_akPlaneEffectTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
m_akPlaneRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The three slice views displayed as texture-mapped polygons:.
m_akPlaneRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The three slice views displayed as texture-mapped polygons:.
m_akPlanes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: The three orthogonal plane TriMeshes.
m_akPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: mesh attributes.
m_akPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
m_akPolygonShapes - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Reference to the texture-mapped polygon on which the image is displayed:.
m_akPolyline - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: axis-aligned clip plane polylines:
m_akRecord - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: the incremental changes representing the decimation.
m_akRecord - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: the incremental changes representing the decimation.
m_akRecords - Variable in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: The record storage for the heap, allocated in one large chunk.
m_akSceneTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_akSlicesColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_akSNormal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Surface normals.
m_akSNormal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akSNormal - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_akSoftwareLightsModel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Soft light array.
m_akSoftwareLightsWorld - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Lighting objects needed for software rendering.
m_akSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Conformal mapping to a sphere. rho is the radius of the stereographic sphere.
m_akSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Conformal mapping to a sphere. rho is the radius of the stereographic sphere.
m_akSTangent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Surface tangents.
m_akSTangent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akSTangent - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_akSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_akSurfaceMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
m_akSurfaceShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_akSurfaceStates - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
m_akTexCoords - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: triangle texture coordinate array.
m_akTrial - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: Those image elements that are adjacent to the current region boundary points are tracked to allow fast updates of the boundary.
m_akTriangle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_akTriangle - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_akTriangleNormals - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Array of triangle normals.
m_akTriColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_akTriColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: puncture triangle color
m_akUnitsLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_akUniverse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Three SimpleUniverses, one for each canavas:.
m_akVertex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Surface vertex list.
m_akVertex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: the highest level of detail data.
m_akVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_akVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_akVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_akVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_akVertex - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_akVertices - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Vertex, Normal, and Connectivity arrays to read into from the file:.
m_akVMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Average vector.
m_akVMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akVMean - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_akVNormal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Vertex normal.
m_akVNormal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_akVNormal - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_akVolumeCost - Variable in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Array of cost information for each sample.
m_akWidgets - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The list of widgets displayed on the 2D Histogram.
m_akWorldLights - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: World general light array.
m_AlignedShapes - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: The aligned shapes.
m_angle - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdgeTrait
M_APP0 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: Required marker in this standard.
M_APP0 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP1 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP10 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP11 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP12 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP13 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP14 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP15 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP2 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP3 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP4 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP5 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP6 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP7 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP8 - Variable in class gov.nih.mipav.model.file.libjpeg
M_APP9 - Variable in class gov.nih.mipav.model.file.libjpeg
m_argv - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: C style argv
m_array_type - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
m_asOriginal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: the original unblurred data:.
m_asSkip - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: support for skipping opaque intermediate pixels.
m_asVolumeData - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Volume of bitmasked values associated with each sample.
m_atElement - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
m_aucData - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_aucSavedImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup image
m_aucSculptImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: m_kSculptImage is a screen shot of the canvas image.
m_aucTextureImageDataA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Texture data for ModelImage A in byte
m_aucTextureImageDataB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Texture data for ModelImage B in byte
m_b4D - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_bAbsPointCoordinates - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Indicates if the point coordinates is in relative or absolute format.
m_bAdded - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: When true a new Widget was added with the mouse.
m_bArbClipOn - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enable Arbitrary clip plane:
m_bAttenuate - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
m_bAxisAligned - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether the slice is axis-aligned or diagonal (for RFA probe rotataions).
m_bBruteForce - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: If true, calculate the brute-force solution:.
m_bBruteForce - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: If true, calculate the brute-force solution:.
m_bBruteForce - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Brute force default is off:.
m_bCalcLineMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bChooseBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: When a branch point along the current branch is reached, this flag is set until the user selects a branch to follow.
m_bChooseBranch - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: When a branch point along the current branch is reached, this flag is set until the user selects a branch to follow.
m_bChooseBranch - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_bCleanup - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_bCleanUp - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bClipOBB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_bClipped - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_bClippedA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_bClipSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
m_bCollapsing - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_bColorApplied - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: keeps track of whether or not color has been applied to surface (for backup on cancel)
m_bColorApplied - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: keeps track of whether or not color has been applied to surface (for backup on cancel)
m_bCompositeForward - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: The actual order of compositing - true if front-to-back.
m_bCompositeForward - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: The actual order of compositing - true if front-to-back.
m_bConstraintsInit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_bConvolve - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Set to true when the image is the product of the ffts of two images, so that on an inverse_fft this image will be centered properly.
m_bCostFinalized - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: Flag is set once this sample's minimum cost has been finalized.
m_bCreateDeformationImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Flag set if the deformation computation is to be performed.
m_bCreateMaskImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
m_bCrop - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Set to true when cropping the volume in the shader.
m_bCtrlDown - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_bCurvatureColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Flag set to indicate whether curvature colors are rendered on the mesh surface.
m_bCurvatureColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Flag set to indicate whether curvature colors are rendered on the mesh surface.
m_bDefaultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
m_bDependentInterfaceInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_bDilate - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: whether or not to dilate the cell contour before solving for the cell on the next frame (dilation helps capture cells that are moving fast).
m_bDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_bDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: boolean to turn rendering on/off for this object.
m_bDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bDisplayAllGlyphs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: When true display the DTI volume with glyphs:
m_bDisplayArrows - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: When true display the fiber tracts with arrows instead of lines:
m_bDisplayB0 - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Whether to just display the B0 weighted image and return, or to do a full calculation:
m_bDisplayCylinders - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: When true display the fiber tracts with cylinders instead of lines:
m_bDisplayDijkstra - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: toggle for displaying Dijkstra's path as well as the smoothed path:.
m_bDisplayEllipsoids - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: When true display the fiber tracts with ellipsoids instead of lines:
m_bDisplayFirst - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_bDisplayLines - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Toggle latitude/longitude display on/off.
m_bDisplaySecond - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_bDisplaySecond - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables/Disables rendering the second pass.
m_bDisplayTransform - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Display transfromed image in separate window: set to false (no display).
m_bDisplayTubes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: When true display the fiber tracts with tubes instead of lines:
m_bDispose - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_bDispose - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bDispose - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_bDisposeComplete - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bDoClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_bDoEncodeSkip - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: flag set by derived class that uses encoding and skipping.
m_bDoMultiThread - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic
m_bDoSubsample - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default subsample set to true:.
m_bDrawAxes - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: when true, the axis labels (P-> L-> S->) will be drawn
m_bDrawAxes - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: when true, the axis labels (P-> L-> S->) will be drawn
m_bDrawAxes - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: when true, the axis labels (P-> L-> S->) will be drawn
m_bDrawLevelSet - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bDrawOval - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bDrawPolyline - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bDrawRect - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bDrawVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bDrawVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Set to true when the user is actively drawing or modifying a VOI contour.
m_bDrawXHairs - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Turns on drawing of the X,Y bars and the Axis labels:.
m_bDrawXHairs - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Turns on drawing of the X,Y bars and the Axis labels:.
m_bDrawXHairs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Turns on drawing of the X,Y bars and the Axis labels:.
m_bDropper - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: General properties which can be shared by all lights types.
m_bEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Turned on when picking with the mouse is enabled:.
m_bEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Enables painting
m_bEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Enables painting
m_bEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Turned on when picking with the mouse is enabled:.
m_bEndpointChanged - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Flag to indicates end ponit changes.
m_bEndpointChanged - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Flag to indicates end point changes.
m_bEntryPointSelect - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Boolean to turn on/off the RFA probe entry point selection with mouse:.
m_bErase - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bExtract - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_bFileLoaded - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Boolean to check that a file is loaded before mouse operations are allowed to occur.
m_bFileLoaded - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_bFileLoaded - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Set to true when a surface has been loaded
m_bFinish - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: m_bFinish is set to true on an OK or Cancel message:.
m_bFinished - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Closing the Geodesic path:.
m_bFinished - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Closing the Geodesic path:.
m_bFirst - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: For blending the reference and tile images, reference image is not blended with background, reset when initData() is called.
m_bFirst - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: First time the scene is rendered.
m_bFirstAdded - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
m_bFirstDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bFirstDrag - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Change the mouse cursor with the first mouseDrag event
m_bFirstDrag - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Change the mouse cursor with the first mouseDrag event
m_bFirstDrag - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Change the mouse cursor with the first mouseDrag event
m_bFirstDrag - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Change the mouse cursor with the first mouseDrag event
m_bFirstRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_bFirstRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: The first time the frame is rendererd use the shader to calculate the normals for the volume data.
m_bFirstScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_bFirstSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_bFirstSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Causes the surface LUT to be calculated for the first time.
m_bFirstVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bFirstVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculations for the oval voi are calculated one time:
m_bFirstWire - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_bFirstWire - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM
m_bFirstWrite - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: When saving the fiber bundle tracts.
m_bFixTarget - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Properties shared by directional and spot lights.
m_bGeodesicEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Geodesic enabled on/off.
m_bGMInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Set to true if the Gradient Magnitude texture map has been initialized.
m_bGPURenderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Set to true if this VOIManagerInterface is used for the GPU-based Volume Renderer
m_bGradientMag - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_bGroupAdded - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Flag for clearing the Geodesic curves, if it is false, no curves have been added to the GeodesicGroup.
m_bGroupAdded - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Flag for clearing the Geodesic curves, if it is false, no curves have been added to the GeodesicGroup.
m_bHistoInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Set to true when the multi-histogram histogram texture has been initialized.
m_bImage25D - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Calculate per-slice:
m_bImage25D - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_bIncreasingOrder - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render the slices by increasing or decreasing coordinate.
m_bInflationInitialized - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Flag set once inflation processing has been initialized.
m_bInflationInitialized - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Flag set once inflation processing has been initialized.
m_bInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Set to true when init() is called:
m_bInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_bInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_bInterpolate - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether to do TriLinear interpolation when exporting a diagonal slice:.
m_bIsColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect: When true the volume data is color.
m_bIsMouseActive - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_bIterate - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
m_bIterate - Variable in class gov.nih.mipav.view.ViewJFrameFastMarching2: DOCUMENT ME!
m_bIterate - Variable in class gov.nih.mipav.view.ViewJFrameFastMarching3: DOCUMENT ME!
m_bLastWire - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_bLastWire - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Live wire last point.
m_bLeftMousePressed - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: True when the left mouse has been pressed, set to false when the left mouse button is released.
m_bLeftMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: True when the left mouse has been pressed, set to false when the left mouse button is released.
m_bLeftMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: True when the left mouse has been pressed, set to false when the left mouse button is released.
m_bLeftMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Set to true when the left mouse is pressed.
m_bLevelSetInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_bLivewire - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Live wire or point and click mode:.
m_bLivewire - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Live wire or point and click mode.
m_bLiveWire - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Whether the livewire properties (e.g. gradient magnitude) should be recalculated
m_bLiveWireInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_bMain - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_bMakeDocumentation - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
m_bMemoryUsage - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Whether to store all the data in ImageComponent2D array or not:.
m_bModified - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Minimizes rendering, only render when modified is true.
m_bMouseDrag - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: keeps track if the user is currently dragging with the mouse
m_bMouseDrag - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Set to true if the left mouse is pressed during drag.
m_bMouseListen - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Flag to turn mouseListener on or off.
m_bMouseMotion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_bMousePressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Mouse events.
m_bMousePressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Mouse events.
m_bMousePressed - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: m_bMousePressed is set to true when the mousePressed callback is activated and the left mouse button is down.
m_bMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: m_bMousePressed is set to true when the mousePressed callback is activated and the left mouse button is down.
m_bMouseReleased - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_bMouseReleased - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_bMoveForward - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Current direction.
m_bMoveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Current direction.
m_bMoveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Current direction.
m_bMoveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_bMultiHisto - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_bNegX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_bNegY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_bNegZ - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_bNext - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: DOCUMENT ME!
m_bNext - Variable in class gov.nih.mipav.view.ViewJFrameFastMarching2: DOCUMENT ME!
m_bNext - Variable in class gov.nih.mipav.view.ViewJFrameFastMarching3: DOCUMENT ME!
m_bNormalsInit - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Set to true if the Normal Map has been initialized.
m_bOpen - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Close path or not.
m_bOpen - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Close path or not.
m_boundary - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_bPaint - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bPaintCan - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bPainted - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Set to true when the surface has been painted.
m_bPaintEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Painting parameters:
m_bParallel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Left-handed camera coordinate system that is initially set up to view the z=0 slice of the 3D image.
m_bPathMoveForward - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_bPathMoveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Annotation flag indicating whether moving was forward
m_bPatientOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Actual image orietation.
m_bPatientOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Actual image orientation.
m_bPatientOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Actual image orientation.
m_bPerPixelLighting - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_bPickable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: boolean to turn picking on/off for this object.
m_bPickCorrespondence - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: BrainSurfaceFlattener pick correspondence enabled on/off.
m_bPickCorrespondenceEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Turned on when picking with the mouse is enabled:.
m_bPickCorrespondenceEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Turned on when picking with the mouse is enabled:.
m_bPickPending - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Set to true when there is a pending pick operation
m_bPickPending - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: When true there is a pending mouse pick to process.
m_bPickPunctureEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_bPickPunctureEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Enable/disable picking puncture triangle
m_bPickSetFlyThru - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Initialzied to true when the the Geodesic.setPickCanvas funtion is called.
m_bPickSetSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_bPlay4D - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bPlay4DVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bPointer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bPrint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
m_bQuickLUT - Variable in class gov.nih.mipav.model.structures.VOIBase: True is this is a QuickLUT contour.
m_bQuickLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: True if the user has selected the quick lut feature:
m_bRadiologicalView - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: When true, display the data in the Radiological View, when false display the Neurological View:.
m_bRelaxed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_bRelaxed - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: For Dijkstra search.
m_bReloadInput - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: For indicating that the volume input data should be reloaded.
m_bReloadPoints - Variable in class gov.nih.mipav.model.structures.VOIBase
m_bRenderModeLighting - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Flag set when texture volume is being rendered using lights.
m_bRenderModeLighting - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Flag set when texture volume is being rendered using lights.
m_bResetAlpha - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: To reset m_kReferenceAlpha:.
m_bResetImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bReverseX - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Flag set to reverse order of "real" X coordinates assigned to samples.
m_bReverseY - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Flag set to reverse order of "real" Y coordinates assigned to samples.
m_bReverseZ - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Flag set to reverse order of "real" Z coordinates assigned to samples.
m_bRightMousePressed - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Flag indicating if the right mouse button is currently pressed down:
m_bRightMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Flag indicating if the right mouse button is currently pressed down:
m_bRightMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Flag indicating if the right mouse button is currently pressed down:
m_bSculptDrawn - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_bSculptDrawn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: True when a sculpt region has been drawn.
m_bSculptEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: m_bSculptEnabled is turned on when the user presses the "Draw Sculpt Outline" button.
m_bSculptEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: m_bSculptEnabled is turned on when the user presses the "Draw Sculpt Outline" button.
m_bSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Set to true when the user has selected a VOI contour.
m_bSetScale - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: True when scale factor should be used:.
m_bShared - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_bShear - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: DOCUMENT ME!
m_bShowDiagonal - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether or not the slice represents an axis-aligned orientation or a diagonal orientation through the ModelImage volume: true when the RFA probe is activated in the SurfaceRender:.
m_bShowMeanCurvatures - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Flag indicates to show pseudo color or not.
m_bShowMeanCurvatures - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Flag indicates to show pseudo color or not.
m_bShowSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_bShowSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bShowSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
m_bShowText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_bShowVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_bSlicePickEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI
m_bSlicePickPending - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI
m_bSnapshot - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Set to true when recording.
m_bSplit - Variable in class gov.nih.mipav.model.structures.VOIBase: True is this is a split-line contour.
m_bStatus - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_bSubsetDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: If true the dialog for this instance of JDialogRegistrationOAR2D will not activate the AlgorithmRegOAR2D:.
m_bSurfaceMaskUpdate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Set to true when the surface mask should be recalculated.
m_bSurfaceUpdate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Set to true when the surface has been added or modified.
m_bTestFrameRate - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
m_bTestFrameRate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer
m_bTestFrameRate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: For testing the frame rate:
m_bTextureOn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Set to true when texture mapping is on.
m_bTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_bTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
m_bUpdate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
m_bUpdateAverage - Variable in class gov.nih.mipav.model.structures.VOIBase: Set to true if the geometric center needs updating.
m_bUpdateBounds - Variable in class gov.nih.mipav.model.structures.VOIBase: Set to true if the contour bounding-box needs updating.
m_bUpdateCenterOnDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bUpdateDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_bUpdateGeometricCenter - Variable in class gov.nih.mipav.model.structures.VOIBase: Set to true if the geometric center needs updating.
m_bUpdateImage - Variable in class gov.nih.mipav.view.PatientSlice: Flag indicating whether the slice or LUT changed:.
m_bUpdateLev - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
m_bUpdateMask - Variable in class gov.nih.mipav.model.structures.VOIBase: Set to true if the contour changes, so the mask will update when needed.
m_bUpdatePBar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Flag indicating whether or not to update the progres bar:.
m_bUpdatePlane - Variable in class gov.nih.mipav.model.structures.VOIBase: Set to true if the contour plane needs updating.
m_bUpdateSpacing - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_bUpdateSpacing - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bUpdateVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_bUseConvexHull - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: flag to use convexhull.
m_bUseConvexHull - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: flag to use convex hull.
m_bUseConvexHull - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Allows warping inside the convex hull.
m_bUseDTIParameters - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: When true, use the ModelImage DTI parameters.
m_bUseMicroscopeConstraints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Boolean to use constraints:.
m_bUseNewImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_bUseNewLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_bUseSrcDelaunay - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: flag to indicate use src Delaunay.
m_bUseTangentSpace - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: flag to use targent space.
m_bUseVelocity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: boolean when true, use the velocity vector:.
m_bUseXRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_bUseXRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Set to true if the slice resolution is read from the .list file: (xRes)
m_bUseYRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_bUseYRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Set to true if the slice resolution is read from the .list file: (yRes)
m_bUseZRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_bUseZRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Set to true if the slice resolution is read from the .list file: (zRes)
m_bValid - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
m_bVerbose - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: current default to false, not used
m_bVisible - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Flag for indicating the that Java Container is visible or not:
m_bWriteImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_bWriteRegMovie - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
m_bWriteVarImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
m_can_decode - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: to tell that a tile can be decoded.
m_codec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codec_private_t
m_col - Variable in class gov.nih.mipav.model.algorithms.LSCM.Triplet
M_COM - Variable in class gov.nih.mipav.model.file.libjpeg
m_CombinedPCA - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The combined PCA.
m_cp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: Coding parameters
m_current_max_segs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
m_current_tile_number - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: number of the tile curently concern by coding/decoding
m_DA_x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: Decoded area set by the user
m_DA_x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_DA_y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_DA_y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
M_DAC - Variable in class gov.nih.mipav.model.file.libjpeg
m_dAccumulatedTime - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_dAccumulatedTime - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_dAddExtents - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: flag to add extents.
m_dAMFVersion - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The AMF format version.
m_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
m_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_ppx
m_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: data for the tile
m_data - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
m_data - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
m_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
m_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_ppx
m_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: size of data
m_dAvgSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: The average shape size (calculated during alignment).
m_dBuildTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: model build time.
m_dc_level_shift - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: the dc_level_shift
m_dD - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
m_dDeltaFuncVal - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: value for stop criterion: abs(f - fplus) < m_dDeltaFuncVal
m_dE_fit - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: fit measure
m_dec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t
m_decoder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t
m_decorrelation_array - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
m_default_tcp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: store decoding parameters common to all tiles (information like COD, COC in main header)
m_dEntropyImageTrg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Precomputed entropy for the target image.
m_Desc - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: console mode description
m_dEta - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: machine precision.
m_dEyeSeparation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Original eye separation, read from the canvas.view.physicalbody.
m_dFit - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: scale fit of AAM
m_dFrameRate - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_dFrameRate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_dGradTol - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: A positive scalar giving the tolerance at which the scaled gradient in considered close enough to zero to terminate the algorithm
M_DHP - Variable in class gov.nih.mipav.model.file.libjpeg
M_DHT - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_DHT - Variable in class gov.nih.mipav.model.file.libjpeg
m_dHx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_dHxy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_dHy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_discard_tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_DisplacementPCA - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: deform displacement PCA.
m_disto_alloc - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: allocation by rate/distortion
m_dK - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: decrease factor in the temperature scheme.
m_dLastTime - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_dLastTime - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_dMachEps - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Machine precision
m_dMaha - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: The Mahalanobis Distance of the model parameters.
m_dMaxStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: A positive scalar giving the maximum allowable scaled steplength at any iteration. maxstep is used to prevent steps that would cause the optimazation algorithm to overflow or leave the domain of interest, as well as to detect divergence.
m_dMeanShapeSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: mean shape size.
m_dMinFit - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The minimum fit.
m_dMinValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: m_iMinValue is used to set the minimum value in the face and blurred face images so that the image is displayed "nicely" in the image window.
M_DNL - Variable in class gov.nih.mipav.model.file.libjpeg
m_dNumSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageReduceEffect
m_dNumSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_dOriginalScreenScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Zoomfactor, zooming in screen scale space, and is relative to original position, this stores that original position:.
m_dOriginalScreenScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Zoomfactor, zooming in screen scale space, and is relative to original position, this stores that original position:.
m_dOverlap - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes
m_dOverlap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_dPtCrv - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: Average point to curve landmark error.
m_dPtPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: Average point to point landmark error.
M_DQT - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_DQT - Variable in class gov.nih.mipav.model.file.libjpeg
M_DRI - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_DRI - Variable in class gov.nih.mipav.model.file.libjpeg
m_dSimilarityMeasure - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: The similarity measure value at optimum.
m_dSrcShapeMaxX - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Source shape extents.
m_dSrcShapeMaxY - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Source shape extents.
m_dSrcShapeMinX - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Source shape extents.
m_dSrcShapeMinY - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Source shape extents.
m_dStartTemperature - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: start temperature.
m_dStepTol - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: A positive scalar giving the tolerance at which the scaled distance between two successive iterated is considered close enough to zero to terminate the algorithm
m_dSum1 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: DOCUMENT ME!
m_dSum2 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: DOCUMENT ME!
m_dSumSquaredError - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Current sum of squared error measure.
m_dTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes
m_dTypF - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: positive scalar estimating the magnitude of f(x) near he minimizer x-star.
m_dXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: search range, currently not used.
m_dXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: search range, currently not used.
m_dXspacing - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: stepping length, currently not used.
m_dYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: search range, currently not used.
m_dYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: search range, currently not used.
m_dYspacing - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: stepping length, currently not used.
m_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
m_edge - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_edge_traits - Variable in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
m_edges - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_edges - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_element_type - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
m_enc - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t
m_end_tile_x - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_end_tile_y - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_eNumGrad - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: methods for estimating the gradient nummericaly
M_EOI - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_EOI - Variable in class gov.nih.mipav.model.file.libjpeg
M_ERROR - Variable in class gov.nih.mipav.model.file.libjpeg
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The type of image scaling used during filter construction.
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The scaling type of the image (default = LsePdeFilter.NONE).
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The scaling type of the image (default = LsePdeFilter.NONE).
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The scaling type of the image (default = LsePdeFilter.NONE).
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The scaling type of the image (default = LsePdeFilter.NONE).
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The scaling type of the image (default = LsePdeFilter.NONE).
m_eScaleType - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The scaling type of the image (default = LsePdeFilter.NONE).
m_eSeedToRand - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: flag for random seed in random walk.
M_EXP - Variable in class gov.nih.mipav.model.file.libjpeg
m_fA0 - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Attenuation coefficients (inverse quadratic attenuation).
m_fA1 - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Attenuation coefficients (inverse quadratic attenuation).
m_fA2 - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: Attenuation coefficients (inverse quadratic attenuation).
m_face - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
m_face - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
m_face - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
m_face - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_face_traits - Variable in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
m_faces - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_fAdvectionWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The advection coefficient 'a' in the PDE that controls the evolution.
m_fAdvectionWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The advection weight 'a'.
m_fAdvectionWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fAlpha - Variable in class gov.nih.mipav.view.WindowLevel: Default alpha blending value:
m_fAlphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: alphaBlending values for compositing two images.
m_fAnalyticGrad - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: flag indicating if the gradient is to be calc. analyticaly or nummericaly
m_fAngle - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: the spot cone angle and exponent.
m_fAngle - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fAngleMax - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_fAnimateRate - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_fAnnotationScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_father - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexTrait
m_fAttenuate - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Attenuation for point and spot lights based on distance of the vertex from the light source.
m_fAttenuationC0 - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Attenuation factor red channel.
m_fAttenuationC1 - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Attenuation factor green channel.
m_fAttenuationC2 - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Attenuation factor blue channel.
m_fAverageEdgesPerVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: self-explanatory statistics.
m_fAverageTrianglesPerEdge - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_fAverageTrianglesPerVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_fAxialBandLimit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_fBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
m_fBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: When set to Float.MAX_VALUE, Neumann conditions are in use (zero-valued derivatives on the image border).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The border value of the image (default = Float.MAX_VALUE).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The border value of the image (default = Float.MAX_VALUE).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The border value of the image (default = Float.MAX_VALUE).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The border value of the image (default = Float.MAX_VALUE).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The border value of the image (default = Float.MAX_VALUE).
m_fBorderValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The border value of the image (default = Float.MAX_VALUE).
m_fBrainSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Factored used to adjust image influence - this is a fixed value.
m_fCenterScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: Distance scale used to position the center sphere control-point out from the center of the circle/ellipse.
m_fCenterX - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The center of the X,Y bar cross hairs, in plane coordinates:.
m_fCenterX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget: Current parameterized coordinates for the center control point in X (used to maintain relative position when resizing the widget).
m_fCenterX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Current parameterized coordinates for the center control point in X (used to maintain relative position when resizing the widget).
m_fCenterY - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The center of the X,Y bar cross hairs, in plane coordinates:.
m_fCenterY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget: Current parameterized coordinates for the center control point in Y (used to maintain relative position when resizing the widget).
m_fCenterY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Current parameterized coordinates for the center control point in Y (used to maintain relative position when resizing the widget).
m_fCoarseRate - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default rotation coarse rate, set to 2 degrees:.
m_fConstant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: DOCUMENT ME!
m_fCosAngle - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: cosine of the spot cone angle, to avoid computing cosine repeatedly.
m_fCost - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: Current accumulated cost in the Dijkstra algorithm.
m_fCubeSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Maximum size of any side of cube for rendering slices.
m_fCurrentDistance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The current distance for boundary pixels in the region growing involving the signed distance transform.
m_fCurvatureWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The curvature coefficient 'c' in the PDE that controls the evolution.
m_fCurvatureWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The curvature weight 'c'.
m_fCurvatureWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fD0 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The image value of the current pixel.
m_fD0 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The image value of the current pixel.
m_fDeltaX - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: Scale factors to use for normalizing the finite differences by axis.
m_fDeltaY - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: DOCUMENT ME!
m_fDeltaZ - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: DOCUMENT ME!
m_fDijkstraCurrent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fDijkstraCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Current Dijkstra path length.
m_fDijkstraPathLength - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Path length statistics for each type of path:.
m_fDijkstraPathLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Path length statistics for each type of path:.
m_fDijkstraPrevious - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fDijkstraPrevious - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Previous Dijkstra path length.
m_fDijkstraTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fDijkstraTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Total Dijkstra path length.
m_fDilationFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Amount to dilate the cell (multiple of the cell radius).
m_fDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_fDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fDistance - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: Current accumulated distance in the Dijkstra algorithm.
m_fDistUnvisitedMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: DOCUMENT ME!
m_fDistUnvisitedMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Range of normalized path distances that have not been visited.
m_fDistUnvisitedMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Range of normalized path distances that have not been visited.
m_fDistUnvisitedMin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Range of normalized path distances that have not been visited.
m_fDistUnvisitedMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Range of normalized path distances that have not been visited.
m_fDistUnvisitedMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Range of normalized path distances that have not been visited.
m_fDRRNormalize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
m_fEParam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
m_fEParam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fEParam - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_fEpsilon - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Error correction Epsilon.
m_fEuclidianCurrent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Values for the current path length between the last two selected points:
m_fEuclidianCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Values for the current path length between the last two selected points:
m_fEuclidianPrevious - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Values for the previous current path length between the last two selected points:
m_fEuclidianPrevious - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Values for the previous current path length between the last two selected points:
m_fEuclidianTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Values for the total path lengths:.
m_fEuclidianTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Values for the total path lengths:.
m_fExponent - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
m_fExternalStorage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
m_fExternalStorage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
m_fExtreme - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fFAMax - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_fFAMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_fFAMin - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_fFAMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_fFineRate - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default rotation fine rate, set to 1 degree:.
m_fFMult - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fFourthInvDxDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: invFourthDxDy = 1/(4*dx*dy)
m_fFourthInvDxDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invFourthDxDy = 1/(4*dx*dy)
m_fFourthInvDxDz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invFourthDxDz = 1/(4*dx*dz)
m_fFourthInvDyDz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invFourthDyDz = 1/(4*dy*dz)
m_fFParam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
m_fFParam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fFParam - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_fFraction - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_fFractionNumControlPoints - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.SetupOptions: Percentage of path samples points to use for the number of control points for a BSpline curve fit.
m_fFractionNumControlPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.SetupOptions: Percentage of path samples points to use for the number of control points for a BSpline curve fit.
m_fGamma - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fGazeDist - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: How far ahead down the path should the view be aimed.
m_fGazeDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: How far ahead down the path should the view be aimed.
m_fGazeDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_fGeodesicSmoothCurrent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fGeodesicSmoothCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Current Geodesic path length
m_fGeodesicSmoothPrevious - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fGeodesicSmoothPrevious - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Previous Geodesic path length
m_fGeodesicSmoothTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_fGeodesicSmoothTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Total Geodesic path length
m_fGMScale - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fGradientEpsilon - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: A small, positive constant added to the gradient magnitude when it is used in a division.
m_fGradientMagnitudeScale - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The scale to use in computing the blurred gradient magnitude of the curvature flow image.
m_fGradMagSqr - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The squared magnitude of the gradient vector for the current pixel.
m_fGradMagSqr - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The squared magnitude of the gradient vector for the current pixel.
m_fHalfInvDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: halfInvDx = 1/(2*dx)
m_fHalfInvDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: halfInvDx = 1/(2*dx)
m_fHalfInvDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: halfInvDy = 1/(2*dy)
m_fHalfInvDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: halfInvDy = 1/(2*dy)
m_fHalfInvDz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: halfInvDz = 1/(2*dz)
m_fIntensity - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Light intensity scale factor.
m_fInv255 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_fInvDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: invDx = 1/dx
m_fInvDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDx = 1/dx
m_fInvDxDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: invDxDx = 1/(dx*dx)
m_fInvDxDx - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDxDx = 1/(dx*dx)
m_fInvDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: invDy = 1/dy
m_fInvDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDy = 1/dy
m_fInvDyDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: invDyDy = 1/(dy*dy)
m_fInvDyDy - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDyDy = 1/(dy*dy)
m_fInvDz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDz = 1/dz
m_fInvDzDz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: invDzDz = 1/(dz*dz)
m_fInvXDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The inverse delta values are for scaling back to original coordinates for correct interpolation of the image.
m_fInvYDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The inverse delta values are for scaling back to original coordinates for correct interpolation of the image.
m_fInvZDelta - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The inverse delta values are for scaling back to original coordinates for correct interpolation of the image.
m_fIPD - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: IPD number.
m_fix_vertices - Variable in class gov.nih.mipav.model.algorithms.LSCM
m_fixed_alloc - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: allocation by fixed layer
m_fixed_quality - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: add fixed_quality
m_fK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: expected cell radius:.
m_fK - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: The local curvature parameter, call it k.
m_fK - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: The local curvature parameter, call it k.
m_fLambda1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Constraint factor for the cell shape:.
m_fLambda2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Constraint factor for the cell size:.
m_fLambda3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Constraint factor for sampling:.
m_fLaplacianWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The Laplacian coefficient 'd' in the PDE that controls the evolution.
m_fLaplacianWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The Laplacian weight 'd'.
m_fLaplacianWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fLogFuncValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Logical variable which determines whether function parameters and corresponding return values should be stored for later analysis.
m_fLower - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Parameters for the threshold segmentation.
m_fLower - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Parameters for the threshold segmentation.
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Normalized volume extents:
m_fMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Maximum dimension.
m_fMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Image scale factors for display in 3D
m_fMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Normalized volume extents:
m_fMax - Variable in class gov.nih.mipav.view.WindowLevel: image max value
m_fMaxAdvectionChange - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The stability of the numerical PDE solver depends heavily on the data being processed.
m_fMaxAdvPropTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The stability of the numerical PDE solver depends heavily on the data being processed.
m_fMaxAngle - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_fMaxAvrConvexity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMaxAvrConvexity - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMaxBoundarySampleDistMin - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
m_fMaxBox - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Numbers dicatating the size of the plane based on the extents and resolutions of the image.
m_fMaxBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fMaxBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fMaxCurvatureChange - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The stability of the numerical PDE solver depends heavily on the data being processed.
m_fMaxCurvatureTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The stability of the numerical PDE solver depends heavily on the data being processed.
m_fMaxDistance - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The maximum distance to allow when computing the signed distance transform.
m_fMaxDistance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The maximum allowed distance for the signed distance transform.
m_fMaxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fMaxDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMaxDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMaximumTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur2: The maximum time step allowed for numerical stability of the filter.
m_fMaximumTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur3: The maximum time step allowed for numerical stability of the filter.
m_fMaxLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_fMaxMeanCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMaxMeanCurvature - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMaxPropagationChange - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The stability of the numerical PDE solver depends heavily on the data being processed.
m_fMaxTime - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: The maximum time in m_afTime[].
m_fMeanEdgeLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Mean length of the vector.
m_fMeanEdgeLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: update parameters.
m_fMeanEdgeLength - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_fMeanNoise - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: The mean noise value:
m_fMeanNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Mean noise vale read from the .list file
m_fMeanNoise - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_fMeanNoise - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Mean noise vale read from the .list file
m_fMetric - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator.HeapRecord: DOCUMENT ME!
m_fMHalfParam - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: -0.5/(k^2*average(|grad(u)|^2))
m_fMHalfParam - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: -0.5/(k^2*average(|grad(u)|^2))
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The minimum image value.
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The default parameters used in the sigmoid function that modifies the gradient magnitude (default alpha = 1, default beta = 0, default min = 0, default max = 1).
m_fMin - Variable in class gov.nih.mipav.view.WindowLevel: image min value
m_fMin1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fMin1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fMin2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fMin2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fMinAvrConvexity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMinAvrConvexity - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMinBranchLength - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.SetupOptions: Minimum length of branch to extract.
m_fMinBranchLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.SetupOptions: Minimum length of branch to extract.
m_fMinDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_fMinDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fMinDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMinDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMinMeanCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fMinMeanCurvature - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fMinTime - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: The minimum time in m_afTime[].
m_fMouseX - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: For zooming with the mouse.
m_fMouseX - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Last/current mouse position.
m_fMouseY - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: For zooming with the mouse.
m_fMouseY - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_fMouseY - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_fNear - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fNewRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: The new resolutions in each dimension if resample is true.
m_fNormalize - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR: Factor used to scale the computed sum along each ray for the purpose of normalizing the integral.
m_fNormalize - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Factor used to scale the intermediate values during the mapping to the final image.
m_fNormalizedPathDist - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_fNormalizedPathDist - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Current position along the path.
m_fNormalizedPathDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Annotation relative distance (in the [0,1] range) along the branch path
m_fNormalizedPathDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Current position along the path.
m_fNormalizedPathDist - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Current position along the path.
m_fObjectiveNumericalAperature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: numerical aperature of the imaging lens:.
m_fOffset - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The offset used in scaling the image data.
m_fOffsetX - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: "Real" coordinate of sample at the 0 index along the X axis.
m_fOffsetY - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: "Real" coordinate of sample at the 0 index along the X axis.
m_fOffsetZ - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: "Real" coordinate of sample at the 0 index along the X axis.
m_fOldX - Variable in class gov.nih.mipav.view.WindowLevel: previous mouse x-position
m_fOldY - Variable in class gov.nih.mipav.view.WindowLevel: previous mouse y-position
m_fOpacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_fOpacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Opacity for setting the JDialogOpacityControls, used for VOI opacity.
m_fPageMargin - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: page margin
m_fPageWidth - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: page width
m_fParam - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: 1/(k^2*average(|grad(u)|^2))
m_fParam - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: 1/(k^2*average(|grad(u)|^2))
m_fParentBranchPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: DOCUMENT ME!
m_fParentBranchPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Normalized distance (in range [0,1]) along parent branch where the specified branch starts.
m_fParentBranchPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Normalized distance (in range [0,1]) along parent branch where the specified branch starts.
m_fPathStep - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: What is the increment in distance along the path that each step takes.
m_fPathStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: What is the increment in distance along the path that each step takes.
m_fPathStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_fPropagationWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The propagation coefficient 'b' in the PDE that controls the evolution.
m_fPropagationWeight - Variable in class gov.nih.mipav.model.algorithms.levelset.LseParameters: The propagation weight 'b'.
m_fPropagationWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fPtLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_fPtLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fRadialBandLimit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: 3).
m_fRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_fRadius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Circle2f: DOCUMENT ME!
m_fRadius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Radius of the sphere displayed to mark the points on the Geodesic.
m_fRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Radius of the sphere displayed to mark the points on the Geodesic.
m_fRadiusX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: The radius of the circle in the x-direction.
m_fRadiusY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: The radius of the circle in the y-direction.
m_fRangeMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: DOCUMENT ME!
m_fRangeMin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: Remember the range of input values for the progress bar.
m_fRayDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
m_fRayDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fReductionX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Reduce the size of the 1st axis of the ellipsoid so that it fits entirely into brain.
m_fReductionX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fReductionY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Reduce the size of the 2st axis of the ellipsoid so that it fits entirely into brain.
m_fReductionY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fReductionZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Reduce the size of the 3st axis of the ellipsoid so that it fits entirely into brain.
m_fReductionZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fRefractiveIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: sample index of refraction:.
m_fRemainingWeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Weights, relaxed flags, and previous vertex index for Dijkstra's search:.
m_fRemainingWeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Weights, relaxed flags, and previous vertex index for Dijkstra's search:.
m_fReset - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: reset flag.
m_fResX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Slice thickness read from .list file
m_fResX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_fResX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Slice thickness read from .list file
m_fResY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Slice thickness read from .list file
m_fResY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_fResY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Slice thickness read from .list file
m_fResZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Slice thickness read from .list file
m_fResZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_fResZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Slice thickness read from .list file
m_fRho - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fRho - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fRigid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_fRigid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fRotateBegin - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default rotation start, set to negative 5 degrees:.
m_fRotateEnd - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default rotation end, set to postive 5 degrees:.
m_fRotationRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The range of rotations to try in brute-force mode:.
m_fRotationRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The range of rotations to try in brute-force mode:.
m_fRotationRange - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: default rotation range (0).
m_fRScaleX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fRScaleY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_fSAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_fSBeta - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The scale factor used in scaling the image data.
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The scale used for computing the blurred gradient magnitude image (default = 0).
m_fScale - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Scale factor for large images:.
m_fScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ScaledTextureEffect
m_fScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Ellipsoids scale factor, based on the DTI volume:
m_fScale1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fScale1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fScale2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fScale2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fScaleB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Scale factors to apply to each RGB channel.
m_fScaleG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Scale factors to apply to each RGB channel.
m_fScaleR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Scale factors to apply to each RGB channel.
m_fShininess - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Shinness factor, exponential power value for Phong type shading model.
m_fShininess - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: specular coefficient
m_fShininess - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: specular coefficient
m_fSigmoidAlpha - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The parameters for the sigmoid function through which the blurred gradient magnitude image is processed.
m_fSigmoidBeta - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The parameters for the sigmoid function through which the blurred gradient magnitude image is processed.
m_fSigmoidMax - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The parameters for the sigmoid function through which the blurred gradient magnitude image is processed.
m_fSigmoidMin - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The parameters for the sigmoid function through which the blurred gradient magnitude image is processed.
m_fSizeMax - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Maximum coordinate scale factor for real positions.
m_fSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Scale factors for placing [-1,+1] normalized positions and targets into real world space with dimensions.
m_fSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Size of each axis in the original volume.
m_fSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: float Y coordinate scale factor for real positions.
m_fSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Size of each axis in the original volume.
m_fSizeZ - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: float Y coordinate scale factor for real positions.
m_fSizeZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Size of each axis in the original volume.
m_fSliceSpacingCoarse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: DOCUMENT ME!
m_fSliceSpacingFine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Spacing between slices.
m_fSliceThickness - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Sets the correct slice thickness
m_fSMax - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fSMin - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_fSmoothedPathLength - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_fSmoothedPathLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Length of the smoothed geodesic path
m_fSpacingX - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Spacing between each sample along X axis.
m_fSpacingY - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Spacing between each sample along Y axis.
m_fSpacingZ - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Spacing between each sample along Z axis.
m_fSpot - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Attenuation for spot lights based on angle between the unit-length axis of the spot cone and the vector from the spot light position to the vertex.
m_fSpotAngle - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Properties for spot lights only.
m_fSpotExponent - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Spot light exponential factor.
m_fSrcMin - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Given a value in the registered source image, these values are used in this equation to determine the actual histogram bin: int iBinReg = (int)((value - m_fSrcMin) * m_fSrcScale);.
m_fSrcScale - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: DOCUMENT ME!
m_fStiffness - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Stiffness of the surface.
m_fStiffness - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_fStiffness - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_fSurfaceArea - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_fSurfaceArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_fSurfaceArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Surface area.
m_fT0 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: the parameters for clipped rays.
m_fT1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: the parameters for clipped rays.
m_fTanTheta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The time step for the PDE solver.
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The time step of the PDE solver (default = 0.001).
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The time step of the PDE solver (default = 0.001).
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The time step of the PDE solver (default = 0.001).
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The time step of the PDE solver (default = 0.001).
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The time step of the PDE solver (default = 0.001).
m_fTimeStep - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The time step of the PDE solver (default = 0.001).
m_fTMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
m_fTMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
m_fTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: tolerance factor for snake evolution:.
m_fTransparency - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: store the mesh transparency:
m_fTwistAmount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
m_fUmm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUmmm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmmp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmmz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUmpm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmpp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmpz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUmzm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmzp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUmzz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUnitTolerance - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_fUnitTolerance - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_fUpm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUpmm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpmp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpmz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUpper - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: Parameters for the threshold segmentation.
m_fUpper - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: Parameters for the threshold segmentation.
m_fUppm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUppp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUppz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUpzm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpzp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUpzz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUseZSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fUzm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUzmm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzmp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzmz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUzpm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzpp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzpz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Temporary storage for 3x3 neighborhood.
m_fUzzm - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzzp - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fUzzz - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Temporary storage for 3x3x3 neighborhood.
m_fValue - Variable in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: The numeric value of the heap record.
m_fVolume - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Surface volume.
m_fVolumeDiv - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_fVolumeMult - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_fWavelength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: wavelength of the reflected or fluorescing light:.
m_fWeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_fWeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: For Dijkstra search.
m_fX - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Normalized volume extents:
m_fX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Image scale factors for display in 3D
m_fX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Volume coordinates of the data (extents * resolutions):
m_fX0 - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: lower x-bound of the texture-mapped polygon:
m_fX0 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fX0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: lower x-bound of the texture-mapped polygon:
m_fX0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: lower x-bound of the texture-mapped polygon:
m_fX1 - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: upper x-bound of the texture-mapped polygon:
m_fX1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fX1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: upper x-bound of the texture-mapped polygon:
m_fX1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: upper x-bound of the texture-mapped polygon:
m_fXBox - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Numbers dicatating the size of the plane based on the extents and resolutions of the image.
m_fXBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fXBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fXDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The size of a voxel, in voxel units.
m_fXDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The size of a voxel, in voxel units.
m_fXDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: DOCUMENT ME!
m_fXDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
m_fXDelta - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The size of a voxel, in voxel units.
m_fXDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Relative voxel size.
m_fXDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Relative voxel size.
m_fXRange - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Width of the texture-mapped polygon:
m_fXRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Width of the texture-mapped polygon:
m_fXRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Width of the texture-mapped polygon:
m_fXScaleRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The range of scales in x to try in brute-force mode:.
m_fXScaleRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The range of scales in x to try in brute-force mode:.
m_fXScaleRange - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: default x scale range (0).
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: The x-spacing of the image, call it dx.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The x-spacing of the image, call it dx.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The x-spacing of the image.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The x-spacing of the image.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The x-spacing of the image.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The x-spacing of the image.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The x-spacing of the image.
m_fXSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The x-spacing of the image.
m_fXTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: X direction mouse translation.
m_fXTrn - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: For zooming and panning.
m_fY - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Normalized volume extents:
m_fY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Image scale factors for display in 3D
m_fY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Volume coordinates of the data (extents * resolutions):
m_fY0 - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: lower y-bound of the texture-mapped polygon:
m_fY0 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fY0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: lower y-bound of the texture-mapped polygon:
m_fY0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: lower y-bound of the texture-mapped polygon:
m_fY1 - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: upper y-bound of the texture-mapped polygon:
m_fY1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fY1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: upper y-bound of the texture-mapped polygon:
m_fY1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: upper y-bound of the texture-mapped polygon:
m_fYBox - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Numbers dicatating the size of the plane based on the extents and resolutions of the image.
m_fYBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fYBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Numbers dictating the size of the plane based on the extents and resolutions of the image.
m_fYDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The size of a voxel, in voxel units.
m_fYDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The size of a voxel, in voxel units.
m_fYDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: DOCUMENT ME!
m_fYDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
m_fYDelta - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The size of a voxel, in voxel units.
m_fYDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Relative voxel size.
m_fYDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Relative voxel size.
m_fYRange - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Height of the texture-mapped polygon:
m_fYRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Height of the texture-mapped polygon:
m_fYRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Height of the texture-mapped polygon:
m_fYScaleRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The range of scales in y to try in brute-force mode:.
m_fYScaleRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The range of scales in y to try in brute-force mode:.
m_fYScaleRange - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: default y scale range (0).
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: The y-spacing of the image, call it dy.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The y-spacing of the image, call it dy.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The y-spacing of the image.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The y-spacing of the image.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The y-spacing of the image.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The y-spacing of the image.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The y-spacing of the image.
m_fYSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The y-spacing of the image.
m_fYTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Y direction mouse translatioin.
m_fYTrn - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: For zooming and panning.
m_fZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Normalized volume extents:
m_fZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Image scale factors for display in 3D
m_fZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Volume coordinates of the data (extents * resolutions):
m_fZ0 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fZ1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: The plane coordinate x,y dimensions:
m_fZDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The size of a voxel, in voxel units.
m_fZDelta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The size of a voxel, in voxel units.
m_fZDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: DOCUMENT ME!
m_fZDelta - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: DOCUMENT ME!
m_fZDelta - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The size of a voxel, in voxel units.
m_fZDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor: Relative voxel size.
m_fZDelta - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes: Relative voxel size.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour2: The threshold below which the feature image values are clamped to this tolerance.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseGeodesicActiveContour3: The threshold below which the feature image values are clamped to this tolerance.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection2: The threshold below which the feature image values are clamped to this tolerance.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseShapeDetection3: The threshold below which the feature image values are clamped to this tolerance.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold2: The threshold below which the feature image values are clamped to this tolerance.
m_fZeroTolerance - Variable in class gov.nih.mipav.model.algorithms.levelset.LseThreshold3: The threshold below which the feature image values are clamped to this tolerance.
m_fZoom - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: For zooming and panning.
m_fZoomScale - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Image scaling from Zoom:.
m_fZoomScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Image scaling from Zoom:.
m_fZoomScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Image scaling from Zoom:.
m_fZSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_fZSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The z-spacing of the image, call it dz.
m_fZSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The z-spacing of the image.
m_fZSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The z-spacing of the image.
m_fZSpacing - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The z-spacing of the image.
m_graph - Variable in class gov.nih.mipav.model.algorithms.LSCM.Homology
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Edge
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Face
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Loop
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
m_halfedge - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
m_halfedge_traits - Variable in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
m_halfedges - Variable in class gov.nih.mipav.model.algorithms.LSCM.Loop
m_header_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_header_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_header_offset - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_i_ - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_i0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.Edge: DOCUMENT ME!
m_i0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.Edge: DOCUMENT ME!
m_i0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.Edge: DOCUMENT ME!
m_i0 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.Edge: DOCUMENT ME!
m_i1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.Edge: DOCUMENT ME!
m_i1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.Edge: DOCUMENT ME!
m_i1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.Edge: DOCUMENT ME!
m_i1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.Edge: DOCUMENT ME!
m_iAccumulatedFrameCount - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_iAccumulatedFrameCount - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_iActive - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: The index of the current active VOIManager.
m_iAnchorIndex - Variable in class gov.nih.mipav.model.structures.VOIBase: Anchor point.
m_iAnimateCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_iAnnotateListItemSelected - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
m_iAnnotateListItemSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Current annotation in the list.
m_iArrayLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Original data size:.
m_iAxisDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Keep track of which direction along the currently selected slicing axis has been selected for rendering the slices.
m_iAxisSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Keep track of which axis has been currently selected for slicing the volume for rendering.
m_iBackThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Backgroung threshold.
m_iBackThreshold - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_iBlur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iBOrig - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Number of different entries in the BMatrix:
m_iBOrig - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Number of different BMatrix rows:
m_iBOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_iBOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Number of different BMatrix rows:
m_iBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_iBranch - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Annotation branch index
m_iBranchChoiceIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
m_iBranchChoiceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Index of the closest branch at a fork in the path.
m_iBranchChoiceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_iBranchIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Identifies the current curve in the path graph.
m_iBranchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Identifies the current curve in the path graph.
m_iBranchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Identifies the current curve in the path graph.
m_iBrightThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: High threshold.
m_iBrightThreshold - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iBrushSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_iBSplineDegree - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_iBSplineNumControlPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_iCapacity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
m_iCaptureFPS - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_iCirclePts - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_iCirclePts - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iCirclePts - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_iCoarseMax - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_iCol - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix.Index: DOCUMENT ME!
m_iColorSculpt - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: The sculpt region color.
m_iCombinedTrunc - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: combined truncation.
m_iConnectFrom - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: point connect from index.
m_iConnectTo - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: point connect to index.
m_iCost - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default cost function, set to correlation ratio (smoothed, weighted):.
m_iCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
m_iCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The ID of the active and previously active widget.
m_iCurrentFontSize - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: current font size
m_iCurrentGeodesic - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Current displayed geodesic component.
m_iCurrentGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Number of currently loaded fiber bundle groups.
m_iCurrentRecord - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: current level of detail record, 0 <= m_iCurrentRecord <= m_akRecord.length-1.
m_iCurrentTrackCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iCurrentUniverse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: The current universe to be initialized:.
m_iCurrentVOIPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_id - Variable in class gov.nih.mipav.model.algorithms.LSCM.Face
m_id - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
m_id - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_Id - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Synthesize ID
m_Id - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: Transfer function id.
m_iDegree - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
m_iDeviceType - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
m_iDiffusionIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: The number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.
m_iDijkstraCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iDijkstraGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The number of line segments on the Dijkstra curve.
m_iDimX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Constraint parameters:.
m_iDimX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: X Dimension of the input images:
m_iDimX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: X-dimensions for Diffusion Weighted Images.
m_iDimX - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Number of samples in volume along X axis.
m_iDimX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_iDimX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iDimX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: X-dimensions for Diffusion Weighted Images.
m_iDimX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: The DTI volume extents:
m_iDimY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_iDimY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Y Dimension of the input images:
m_iDimY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Y-dimensions for Diffusion Weighted Images.
m_iDimY - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Number of samples in volume along Y axis.
m_iDimY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_iDimY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iDimY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Y-dimensions for Diffusion Weighted Images.
m_iDimY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: The DTI volume extents:
m_iDimZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_iDimZ - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Number of samples in volume along Z axis.
m_iDimZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iDimZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: The DTI volume extents:
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDIterations - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The number of iterations to use in the nonlinear diffusion used to create the feature image (default = 0).
m_iDMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Dilation size used in generating boundary from the surface.
m_iDMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_iDMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iDOF - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default degrees of freedom:.
m_iDrawType - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_iDstBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_iEllipsoidMod - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: In the display all ellipsoids mode the ellipsoids are displayed every m_iEllipsoidMod steps.
m_iEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The index of the vertex in the triangle mesh where the Geodesic curve is to end.
m_iEQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_iEQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_iEQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_iEQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iEQuantity - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: DOCUMENT ME!
m_iEuclidianGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The number of line segments on the Euclidian curve.
m_iEvolveMax - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_iExtractLevel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract: Intensity level for GPU-surface extraction.
m_iExtractLevel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Intensity level for GPU-surface extraction.
m_iFaceDeleted - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iFaceFound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iFilter - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Resample filter type, default: Trilinear Interpoloation.
m_iFilterType - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Type of level set diffusion filter to apply.
m_iFilterType - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_iFirst - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iFirstX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iFirstX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: First x mouse position
m_iFirstY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iFirstY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: First y mouse position
m_iFrameCount - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_iFrameCount - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_iGenerator - Variable in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: The generator for the heap record.
m_iGridY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_iGridY - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Keeps track of the user-interface position in the main panel.
m_iGrow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: On a reallocation, the old maximum quantity is incremented by this value.
m_iGrow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: On a reallocation, the old maximum quantity is incremented by this value.
m_iGrow - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: On a reallocation, the old maximum quantity is incremented by this value.
m_iGrow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: On a reallocation, the old maximum quantity is incremented by this value.
m_iGrowBy - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
m_iHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_iHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Canvas width and height
m_iHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_iHIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator.HeapRecord: DOCUMENT ME!
m_iHQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: collapse support.
m_iI0 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Temporary quantities used in the inner loop of resampleSingle().
m_iID - Variable in class gov.nih.mipav.model.structures.VOIPoint: ID if this VOIPoint is contained in a PolyLineSlice object.
m_iIndex - Variable in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: The index of the heap record in the records array.
m_iIndexCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: index count.
m_iIndexCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: index count.
m_iIndexFurthestDistance - Variable in class gov.nih.mipav.view.renderer.flythroughview.DijkstraMinCostPath: Linear array index of the sample that is the furthest away from the starting sample.
m_iIndexPathStart - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: This the linear array index for the sample from which all computed paths will originate.
m_iInterBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: intermediate 2D image supporting quantities.
m_iInterBoundM1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: intermediate 2D image supporting quantities.
m_iInterIndex - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Temporary quantities used in the inner loop of resampleSingle().
m_iInterOffset - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_iInterp - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default image interpolation, set to be bilinear interpolation:.
m_iInterp2 - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default interpolation for the transform algorithm:.
m_iInterQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: intermediate 2D image supporting quantities.
m_iIQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: connectivity array indices in [0..TQ-1] that contain VThrow.
m_iIters - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching
m_iKey - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: Non-negative unique key value identifying this point.
m_iKeyPrev - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: This value is KEY_UNDEFINED until such time that the point has been marked visited as part of the Dijkstra algorithm.
m_iLabelX_SpacingX - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_iLabelX_SpacingX - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iLabelX_SpacingY - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_iLabelX_SpacingY - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iLabelY_SpacingX - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_iLabelY_SpacingX - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iLabelY_SpacingY - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_iLabelY_SpacingY - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iLastSelectedBranchIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Keep track of the last branch that was selected (at a branch point).
m_iLastSelectedBranchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Keep track of the last branch that was selected (at a branch point).
m_iLastValue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: Remember the value passed to the setValue method of the JProgressBar.
m_iLastX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iLastX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Last x mouse position
m_iLastY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iLastY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Last y mouse position
m_iLearningMethod - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: which learning method to use.
m_iLineClosed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iLineClosed - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The index of the last node on a closed path.
m_iLiveWireSelection - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Type of livewire cost function, gradient magnitude, laplace, intensity.
m_iLUTIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
m_iM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iMaxBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iMaxBranches - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.SetupOptions: Maximum number of branches to extract.
m_iMaxBranches - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.SetupOptions: Maximum number of branches to extract.
m_iMaxCoarse - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Number of coarse iterations
m_iMaxDepth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The length of the vector _normal_ to the surface to sample along.
m_iMaxEvolution - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Number of evolution iterations
m_iMaxExtent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
m_iMaxGroups - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: maximum number of fiber tracts currently displayed.
m_iMaximumEdgesPerVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_iMaximumTrianglesPerEdge - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_iMaximumTrianglesPerVertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_iMaxIterations - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default number of iteration set to 2:.
m_iMaxQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The maximum number of elements in the array.
m_iMaxQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The maximum number of elements in the array.
m_iMaxQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The maximum number of elements in the array.
m_iMaxQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The maximum number of elements in the array.
m_iMaxThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Histogram maximum intensity parameter.
m_iMaxThreshold - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iMaxTimer - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_iMaxTimer - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_iMaxTractLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iMaxUndo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
m_iMedianIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Histogram median intensity parameter.
m_iMedianIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_iMedianIntensity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iMinBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iMinLength - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
m_iMinThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Histogram minimum intensity parameter.
m_iMinThreshold - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: histogram parameters.
m_iMinTractLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_iMM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iMode - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: type of box (X_SLICE, Y_SLICE, Z_SLICE).
m_iModelReduction - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: flag for model reduction.
m_iMouseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Stores which button was pressed during mouse drag.
m_iMouseX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Stores the mouse position for picking.
m_iMouseY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Stores the mouse position for picking.
m_iMovieCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_iNbPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: The number of points.
m_index - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexTrait
m_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
m_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
m_iNearStatus - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: The near status of the mouse, used to set the mouse cursor.
m_iNewIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Support for remove and removeAt.
m_iNewIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Support for remove and removeAt.
m_iNewIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Support for remove and removeAt.
m_iNewIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Support for remove and removeAt.
m_iNextItemKey - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: DOCUMENT ME!
m_iNextItemKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Annotation item number.
m_iNMaxCand - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: max candidate number.
m_iNShapes - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: the number of shapes.
m_iNumberIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Number of iterations for the deconvolution:.
m_iNumberPoints - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iNumberPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Number of points in the free-hand line.
m_iNumberProgress - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Show the deconvolved image in progress every m_iNumberProgress steps:.
m_iNumBins - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Number of bins to use for computation.
m_iNumBins - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Number of bins to use for computation.
m_iNumCurves - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The number of curves.
m_iNumGeodesicVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iNumGeodesicVertices - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Number of vertices in the geodesic curve.
m_iNumLat - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
m_iNumLon - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
m_iNumMinima - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Default number of minima to test from level 8 at level 4 (set to 3):.
m_iNumNewMeshes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Number of meshes.
m_iNumNewMeshes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Number of meshes.
m_iNumNotRemoved - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Number of triangles not removed during a cut mesh operation.
m_iNumPicked - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: number of picked points displayed.
m_iNumPicked - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Keeps track of the of picking, so that when a pair of points has been picked the Geodesic is calculated:.
m_iNumPicked - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: number of picked points displayed.
m_iNumPicked - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Keeps track of the of picking, so that when a pair of points has been picked the Geodesic is calculated:.
m_iNumPreset - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Preset Material's examples:.
m_iNumPreset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Preset Material's examples:.
m_iNumPrev - Variable in class gov.nih.mipav.model.structures.DijkstraCostItem: This is the number of samples along the minimum cost path it takes to get from the starting sample to this sample.
m_iNumRemoved - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Number of triangles removed during a cut mesh operation.
m_iNumSamples - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Total number of samples in the target image.
m_iNumSamplesSrcX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: DOCUMENT ME!
m_iNumSamplesSrcX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_iNumSamplesSrcXY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_iNumSamplesSrcY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: DOCUMENT ME!
m_iNumSamplesSrcY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_iNumSamplesSrcZ - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_iNumSamplesTrg - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Total number of samples in target, registered source, and error images.
m_iNumSamplesTrgX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Number of samples in source and target images.
m_iNumSamplesTrgX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Number of samples in source and target images.
m_iNumSamplesTrgXY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_iNumTriangles - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Number of triangles in the mesh, after the new triangles are added:.
m_iNumTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Number of triangles in the mesh, after the new triangles are added:.
m_iNumVoxels - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Image volume size and x, y, z extents.
m_iNumVoxels - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Dimensions of the volume.
m_iNumWorking - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: number of vertices in the path.
m_iNumWorking - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: number of vertices in the path.
m_InvLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Inverse LUT function.
m_iOldIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Support for remove and removeAt.
m_iOldIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Support for remove and removeAt.
m_iOldIndex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Support for remove and removeAt.
m_iOldIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Support for remove and removeAt.
m_iOpen - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: index of the non-selected image:.
m_iOpenSave - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup of the open index:.
m_iOriginalHeight - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iOriginalWidth - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: The original canvas size.
m_iP - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iParentBranchIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Information about the parent branch, if one exists.
m_iParentBranchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Information about the parent branch, if one exists.
m_iParentBranchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Information about the parent branch, if one exists.
m_iPasses - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_iPathID - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: shape path ID to indicate which shape.
m_iPermute - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: the current permutation of the voxel indices (0, 1, or 2).
m_iPermute - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: the current permutation of the voxel indices (0, 1, or 2).
m_iPicked - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The ID of the
m_iPixel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Temporary quantities used in the inner loop of resampleSingle().
m_iPlane - Variable in class gov.nih.mipav.model.structures.VOIBase: Current plane of this contour.
m_iPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Set to XPLANE, YPLANE, or ZPLANE, depending on the image orientation.
m_iPlaneOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Which dimension of the ModelImage to render.
m_iPlaneOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Which dimension of the ModelImage to render.
m_iPlaneOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Which dimension of the ModelImage to render.
m_iPP - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iPrevious - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iPrevious - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: For Dijkstra search.
m_iPrevious - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The ID of the active and previously active widget.
m_iPreviousX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Previous and first mouse positions:.
m_iPreviousX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Previous and first mouse positions:.
m_iPreviousY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iPreviousY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Previous and first mouse positions:.
m_iPrevTriangle - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: previous triangle index.
m_iPunctureTri - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: The index of the puncture triangle for computing the conformal mapping:.
m_iPunctureTri - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: The index of the puncture triangle for computing the conformal mapping:.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The MRI image bounds and quantity of voxels.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: The number of valid elements in the array.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The MRI image bounds and quantity of voxels.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: The number of valid elements in the array.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: The number of image elements.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: The number of active records in the heap.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: The number of image elements.
m_iQuantity - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The number of image elements.
m_iQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: The number of valid elements in the array.
m_iQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The MRI image bounds and quantity of voxels.
m_iQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: The number of valid elements in the array.
m_iQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Product of the image dimensions.
m_iQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Parallel viewing model.
m_iRange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iRBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iReference - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Index of the reference image:.
m_iReferenceSave - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Backup of the reference index:.
m_iRenderLoops - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_iReverseFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_iRow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix.Index: DOCUMENT ME!
m_iRunningNumPicked - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_iRunningNumPicked - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Cycle through the number of correspondence points.
m_is_decoder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: tells if the parameter is a coding or decoding one
m_is_decoder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t
m_is_decoder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t: tell if the tcd is a decoder.
m_is_irreversible - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
m_Is2D - Variable in class gov.nih.mipav.model.structures.TransMatrix: Transform was constructed to transform 2D vectors, instead of 3D
m_Is2D - Variable in class gov.nih.mipav.model.structures.TransMatrixd: Transform was constructed to transform 2D vectors, instead of 3D
m_iScaleSteps - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The number of steps to divide scale ranges:.
m_iScaleSteps - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The number of steps to divide scale ranges:.
m_iScaleSteps - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: default number of divisions for scale optimazation:.
m_iScreenCaptureCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Screen capture counter.
m_iScreenCaptureCounter - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_iScreenCaptureCounter - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_iSculptHeight - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: DOCUMENT ME!
m_iSculptHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Window width information for Sculpting.
m_iSculptImageHeight - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iSculptImageHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: sculpt image height
m_iSculptImageWidth - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Size of the m_kSculptImage, when it is captured.
m_iSculptImageWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: sculpt image width
m_iSculptWidth - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Window information for Sculpting:.
m_iSculptWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Window width information for Sculpting.
m_iSegmentSurfaceBranchSamplesReductionFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.SetupOptions: The number of samples which define each branch path is reduced by this factor for the purpose of speeding up the segmentation of the surface.
m_iSegmentSurfaceBranchSamplesReductionFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.SetupOptions: The number of samples which define each branch path is reduced by this factor for the purpose of speeding up the segmentation of the surface.
m_iSelected - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: index of the selected image:
m_iShapeTrunc - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: shape truncation.
m_iSimilarityMeasure - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The similarity measure to be used.
m_iSIndex - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Temporary quantities used in the inner loop of resampleSingle().
m_iSize - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
m_iSizeX - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Image volume size and x, y, z extents.
m_iSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_iSizeY - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Image volume size and x, y, z extents.
m_iSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_iSizeZ - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Image volume size and x, y, z extents.
m_iSizeZ - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_iSlice - Variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
m_iSlice - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Which slice is currently displayed in the XY plane.
m_iSlice - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_iSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Which slice is currently displayed in the XY plane.
m_iSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Which slice is currently displayed in the XY plane.
m_iSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_iSliceQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_iSlices - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Number of slices in the input images:
m_iSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Number of slices in the Diffusion Weighted Images series.
m_iSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_iSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Number of slices in the Diffusion Weighted Images series.
m_iSliceTarget - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Index of the slice in the input source image to use as the target.
m_iSmoothedGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Root group for different path.
m_IsNIFTI - Variable in class gov.nih.mipav.model.structures.TransMatrix: boolean indicating whether this matrix is associated with a NIFTI image (special case handling)
m_IsNIFTI - Variable in class gov.nih.mipav.model.structures.TransMatrixd: boolean indicating whether this matrix is associated with a NIFTI image (special case handling)
m_IsQform - Variable in class gov.nih.mipav.model.structures.TransMatrix: If true, nifti matrix codes for a qform matrix If false, nifti matrix codes for a sform matrix Value has no effect if not a nifti matrix
m_IsQform - Variable in class gov.nih.mipav.model.structures.TransMatrixd: If true, nifti matrix codes for a qform matrix If false, nifti matrix codes for a sform matrix Value has no effect if not a nifti matrix
m_iSrcBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_iStart - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: The start, first, and end index values for the pair of points:.
m_iStart - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The start index value for the pair of points.
m_iState - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: state variables to keep track of which step the algorithm is on:.
m_iStereo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Stereo on/off.
m_iStereoUpdateCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: First time the stereo canvas is rendered, set to true:.
m_iStopCriteria - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: holds the stop criteria in use, e.g m_iStopCriteria = etermMaxFuncEval | etermMaxIterations
m_iSum0 - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Cummulative summations for computing the total variance.
m_iSurfaceIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: the index of the surface that is being changed in the JPanelSurface
m_iSurfaceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: the index of the surface that is being changed in the JPanelSurface
m_iTargetSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Index of the slice from the source image to use for 2.5 registration.
m_iTCurrent - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_iter - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
m_iter - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
m_iter - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
m_iter - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
m_iTextureID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState
m_iTextureSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The number of texture samples in the model.
m_iTextureSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: number of texture samples.
m_iTextureSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: This are the actual dimensions of the texture associated with each dimension of the volume.
m_iTextureSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: DOCUMENT ME!
m_iTextureSizeZ - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: DOCUMENT ME!
m_iTextureTrunc - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: texture truncation.
m_iTile - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Index of the tile image:.
m_iTimer - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Framerate Performance parameters:
m_iTimer - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Framerate Performance parameters:
m_iTimeSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Current position in time (4D data)
m_iTimeSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Total number of time-slices (4D data)
m_iTQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The number of triangle in the ellipsoid.
m_iTQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: number of triangles after edge collapse.
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: DOCUMENT ME!
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_iTQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_iTranslationRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The range of x,y translations to try in brute-force mode:.
m_iTranslationRange - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The range of x,y translations to try in brute-force mode:.
m_iTranslationRange - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: default x,y translation range (0).
m_iTSSubsampling - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
m_iType - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Type of light and limit for available light types which can be selected.
m_iType - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Dialog type.
m_iTypeFlags - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: point type flag.
m_iTypeMask - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Light type mask.
m_iUnique_ID - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Unique ID, for the surface:.
m_iUnique_ID - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Unique ID, for the surface:.
m_iUsedWidgets - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_iV - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Vertex: DOCUMENT ME!
m_iV0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Edge: DOCUMENT ME!
m_iV0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle: DOCUMENT ME!
m_iV1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Edge: DOCUMENT ME!
m_iV1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle: DOCUMENT ME!
m_iV2 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle: DOCUMENT ME!
m_iVCurrent - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: for reordering vertices and triangles.
m_iVertexCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Local copies of the Vertex and Index arrays: a local copy is kept so that when the start or end points fall inside a triangle, a new vertex is added to the vertex array, and three new triangles are added to the triangle index array, new normals are added to the Normal array:.
m_iVertexCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Local copies of the Vertex and Index arrays: a local copy is kept so that when the start or end points fall inside a triangle, a new vertex is added to the vertex array, and three new triangles are added to the triangle index array, new normals are added to the Normal array:.
m_iVKeep - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: edge collapses so that VThrow is replaced by VKeep.
m_iVOICount - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_iVOICount - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_iVOIType - Variable in class gov.nih.mipav.model.structures.VOIBase: VOI type of this contour.
m_iVQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The number of vertices in the ellipsoid.
m_iVQuantity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: mesh data.
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: number of vertices after edge collapse.
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: triangle mesh to be decimated.
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: number of vertices, edge, and triangles in the mesh.
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: mesh topology.
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: DOCUMENT ME!
m_iVQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: mesh data.
m_iVThrow - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: DOCUMENT ME!
m_iWarpMethod - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
m_iWeights - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Number of images in the weighted series:
m_iWeights - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Number of weights in the Diffusion Weighted Images series.
m_iWeights - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_iWeights - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Number of weights in the Diffusion Weighted Images series.
m_iWhich - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_iWhichButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Which button is pressed to activate the JColorChooser:.
m_iWhichButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Which button is pressed to activate the JColorChooser:.
m_iWhichShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Indicates which shader to use (MIP, DDR, CMP, SUR, CMP_SUR, MULTIHISTO):
m_iWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_iWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Canvas width and height
m_iWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_iX0 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: Indexes into linear array for X-axis finite difference computed by array[m_iX1] - array[m_iX0];.
m_iX1 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: DOCUMENT ME!
m_iXBm1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: XBm1 = XBound - 1
m_iXBm1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: XBm1 = XBound - 1
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The MRI image bounds and quantity of voxels.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: image parameters:.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The MRI image bounds and quantity of voxels.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: The x-bound of the image, call it XBound.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: The x-bound of the image, call it XBound.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The x-bound of the image.
m_iXBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The MRI image bounds and quantity of voxels.
m_iXBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Dimensions of imageA.
m_iXBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iXBoundM1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iXBoundM2 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iXClick - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: x,y positions of the mouse when one of the mouse buttons is pressed:.
m_iXMax - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iXMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: The min and max x,y mouse values
m_iXMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: The min and max x,y mouse values:.
m_iXMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: The min and max x,y mouse values
m_iXPick - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Picking support:
m_iXPick - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Picking support:
m_iXYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: XYBound = XBound*YBound
m_iXYProduct - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iXYZProduct - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iY0 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: Indexes into linear array for Y-axis finite difference computed by array[m_iY1] - array[m_iY0];.
m_iY1 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: DOCUMENT ME!
m_iYBm1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: YBm1 = YBound - 1
m_iYBm1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: YBm1 = YBound - 1
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The MRI image bounds and quantity of voxels.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The MRI image bounds and quantity of voxels.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch2: The y-bound of the image, call it YBound.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: The y-bound of the image, call it YBound.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The y-bound of the image.
m_iYBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The MRI image bounds and quantity of voxels.
m_iYBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Dimensions of imageA.
m_iYBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iYBoundM1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iYBoundM2 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iYClick - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: x,y positions of the mouse when one of the mouse buttons is pressed:.
m_iYMax - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iYMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: The min and max x,y mouse values
m_iYMin - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_iYMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: The min and max x,y mouse values
m_iYPick - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Picking support:
m_iYPick - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Picking support:
m_iZ0 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: Indexes into linear array for Z-axis finite difference computed by array[m_iZ1] - array[m_iZ0];.
m_iZ1 - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout.GradientNeighbors: DOCUMENT ME!
m_iZBm1 - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: ZBm1 = ZBound - 1
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The MRI image bounds and quantity of voxels.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: The MRI image bounds and quantity of voxels.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch3: The z-bound of the image, call it ZBound.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: The z-bound of the image.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The z-bound of the image.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The z-bound of the image.
m_iZBound - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The z-bound of the image.
m_iZBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The MRI image bounds and quantity of voxels.
m_iZBound - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Dimensions of imageA.
m_iZBound - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iZBoundM1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_iZBoundM2 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
M_JPG - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_JPG - Variable in class gov.nih.mipav.model.file.libjpeg
M_JPG0 - Variable in class gov.nih.mipav.model.file.libjpeg
M_JPG13 - Variable in class gov.nih.mipav.model.file.libjpeg
M_JPG8 - Variable in class gov.nih.mipav.model.file.libjpeg
m_k4DSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
m_kActiveImage - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Current active image for manipulating the LUT by dragging with the right-mouse down.
m_kActiveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Current active image for manipulating the LUT by dragging with the right-mouse down.
m_kActiveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Current active image for manipulating the LUT by dragging with the right-mouse down.
m_kActiveList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: List of active VOIBase for a moving several selected VOIs.
m_kActiveLookupTable - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The current active lookup table:
m_kActiveLookupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: The current active lookup table:
m_kActiveLookupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: The current active lookup table:
m_kADCImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output Trace (ADC) Image (before diagonalization of diffusion tensor):
m_kAdvancedMaterialOptionsButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The material options button, which launches the material editor window.
m_kAdvancedMaterialOptionsButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The material options button, which launches the material editor window.
m_kAdvancedOptionsButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Launches the JDialogRegistrationOAR2D dialog to set registration options:.
m_kAlgorithmReg - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Flag set if the deformation computation is to be performed.
m_kAlpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kAlpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Alpha blending for this object.
m_kAlphaTransparency - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Alpha blending for this object.
m_kAmbient - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Current color values:.
m_kAmbient - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Current color values:.
m_kAmbientColorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Material Properties color buttons:.
m_kAmbientColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Material Properties color buttons:.
m_kAnimator - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Animator object, displays scene in rendering loop (similar to GLUTMainLoop()
m_kAnimator - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
m_kAnimator - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kAnisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Anisotropy image *
m_kAnisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Anisotropy image
m_kAnisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Anisotropy image *
m_kAnisotropyPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Anisotropy file input path name text box.
m_kAnnotateList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Keep reference to instance which describes the annotation points.
m_kAnnotateList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is for the collection of annotation points.
m_kAnnotateList - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Keep reference to instance which describes the annotation points.
m_kAnnotateList - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Annotations along the fly path.
m_kAnnotatePointGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kAnnotationAnimationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kAppearance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: The same appearance properties used to render each slice.
m_kAppearance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: The same appearance properties used to render each slice.
m_kApplyAllButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button to apply sculpt region to the volume.
m_kApplySculptButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Button to apply sculpt region to the volume.
m_kApplySculptButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button to apply sculpt region to the volume.
m_kArbitraryClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_kArbitraryClipInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_kArbRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Node for rotating the arbitrary clip plane with the mouse trackball:
m_kArrow - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: arrow glyphs
m_kAxis - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: the spot cone unit-length axis.
m_kAxisAngle - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Axis angle vector.
m_kB0Frame - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: ViewJFrameImage for displaying the B0 weighted image:
m_kB0Image - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: B0 weighted image:
m_kBackgroundColor - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Background color of rendered image.
m_kBackgroundColor - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kBackupVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
m_kBallPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kBallPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kBasicMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
m_kBasisX - Variable in class gov.nih.mipav.model.structures.BSplineLattice2Df: DOCUMENT ME!
m_kBasisX - Variable in class gov.nih.mipav.model.structures.BSplineLattice3Df: DOCUMENT ME!
m_kBasisY - Variable in class gov.nih.mipav.model.structures.BSplineLattice2Df: DOCUMENT ME!
m_kBasisY - Variable in class gov.nih.mipav.model.structures.BSplineLattice3Df: DOCUMENT ME!
m_kBasisZ - Variable in class gov.nih.mipav.model.structures.BSplineLattice3Df: DOCUMENT ME!
m_kBillboardPos - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kBlendColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_kBlendEquationColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend: The combo box for the Blend Equation mode to display.
m_kBMatrix - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: General matrix storing BMatrix values.
m_kBMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: General matrix storing BMatrix values.
m_kBMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_kBMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: General matrix storing BMatrix values.
m_kBorder - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Data memebr for Dijkstra's search.
m_kBorder - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Data member for Dijkstra's search.
m_kBoundingBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kBoundingBoxShaderSolid - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
m_kBoundingBoxShaderTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
m_kBracketNewOut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kBracketOut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kBracketPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kBrainsurfaceFlattenerPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panels for the Brainsurface Flattener:.
m_kBranchConnectShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kBranchCurve - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: DOCUMENT ME!
m_kBranchCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Branch curve
m_kBranchCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Branch curve
m_kBranchPathShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the Java3D geometry for the path.
m_kBranchState - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
m_kBranchState - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Current branch state of traversing the fly path.
m_kBranchState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_kBSpline2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kBSpline2D - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: DOCUMENT ME!
m_kBSpline3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kBSpline3D - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_kBSplineBasisX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: 2D and 3D B-Spline basis definitions.
m_kBSplineBasisX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: 2D B-Spline basis definitions.
m_kBSplineBasisX - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: 3D B-Spline basis definitions.
m_kBSplineBasisY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kBSplineBasisY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: DOCUMENT ME!
m_kBSplineBasisY - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_kBSplineBasisZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kBSplineBasisZ - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: DOCUMENT ME!
m_kButtonLoadImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kButtonLoadSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kButtonLoadSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Cos matrix: = cos( 2*pi*i/n).
m_kCalcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_kCalcImage2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_kCalcResult1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kCalcResult2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kCalcResult3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kCalcTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kCallback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Instance which implements the Callback interface whose viewChanged method is to be called whenever anything about this behavior changes.
m_kCallback - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Instance which implements the Callback interface whose viewChanged method is to be called whenever anything about this behavior changes.
m_kCallback - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Instance which implements the Callback interface whose viewChanged method is to be called whenever anything about this behavior changes.
m_kCameraDVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Camera direction vector at Annotation point.
m_kCameraLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Camera location at Annotation point.
m_kCameraRVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Camera right vector at Annotation point.
m_kCameraUVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Camera up vector at Annotation point.
m_kCanvas - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Drawing canvas:.
m_kCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The Canvas3D object on which the plane is drawn.
m_kCanvas - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Canvas reference for drawing :.
m_kCanvas3D - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Canvas3D reference for drawing :.
m_kCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: initial ellipsoid parameters.
m_kCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: initial ellipsoid parameters.
m_kCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: The center G, orientation R, diagonal matrix D, and constant L in the factorization (P-G)^T R^T D R (P-G) = L.
m_kCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Circle2f: DOCUMENT ME!
m_kCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_kCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Center of Mesh
m_kCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Center of surface.
m_kCenterDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: Direction used to position the center sphere control-point out from the center of the circle/ellipse.
m_kCenterScanner - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kCExclude - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kCheckBoxShowCurvatures - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kCheckBoxShowCurvatures - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Show curvature colors check box.
m_kCheckBoxShowCurvatures_actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Show the psesudo color.
m_kCheckBoxShowCurvatures_actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Show the psesudo color.
m_kCheckCreateDeformationImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kCheckLivewire - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Toggle between LiveWire Interaction and point & click interaction:.
m_kCheckLivewire - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Toggle between LiveWire Interaction and point & click interaction:.
m_kCheckMultiPass - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kCIgnore - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kCInclude - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kClearAllCutsButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kClearAllCutsButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Clearsall cuts.
m_kClearAllGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kClearAllGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Clearsall Geodesic components.
m_kClearDrawOutlineButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Button for clearing the sculpt region.
m_kClearDrawOutlineButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button for clearing the sculpt region.
m_kClearLastCutButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kClearLastCutButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Clear the last cut.
m_kClearLastGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Button for deleting the geodesic.
m_kClearLastGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Button for deleting the geodesic.
m_kClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Sets the Color.
m_kClipEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
m_kClipEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_kClipInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kCloseAllButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Close all images and remove them from the scene:.
m_kColor - Variable in class gov.nih.mipav.model.structures.VOIBase: Contour color.
m_kColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: The color m_kColor is the object returned in the colorOf functions.
m_kColor - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: DOCUMENT ME!
m_kColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Color button for changing the color of the fiber bundles.
m_kColorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Color Chooser dialog:.
m_kColorChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Color chooser for when the user wants to change the color of the fiber bundle tracts.
m_kColorChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Color Chooser dialog:.
m_kColorEllipse - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Volume-based color for the ellipsoids:
m_kColorImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output Color mapped Image:
m_kColorMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Data storage for color map:
m_kColorMapNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kColorMapTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for color map:
m_kColors - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Store the mesh colors:
m_kColorVector - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Surface color vector. - TO BE MOVED - redesigned
m_kComboBoxCostFunction - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kComboBoxTargetImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Controls displayed in the dialog box.
m_kComboBoxTargetSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kComboSegmentSurfaceBranchSamplesReductionFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Surface sample reduction factor.
m_kComboSegmentSurfaceBranchSamplesReductionFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Surface sample reduction factor.
m_kComponent - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: The canvas
m_kContinueUpdate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kContinueUpdate - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Continuous update check box.
m_kContinueUpdate_actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Continue update the surface render and the plane render.
m_kContinueUpdate_actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Continue update the surface render and the plane render.
m_kControlFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the control frame which may need to be updated as the view changes.
m_kControlFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: This is the control frame which may need to be updated as the view changes.
m_kControlsPass1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Container for controls to select the parameters for the first pass of registration.
m_kControlsPass2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Container for controls to select the parameters for the optional second pass of registration.
m_kCoordMapX - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: These vectors are used for mapping each coordinate from its real range into the range [0,1] where real coordinate 0 maps to texture coordinate 0, and real coordinate at the maximum sample index along that axis maps to 1.
m_kCoordMapY - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: DOCUMENT ME!
m_kCoordMapZ - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: DOCUMENT ME!
m_kCopyVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kCopyVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: The contour to copy.
m_kCortical - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Cortical mesh to be used in rendering scene.
m_kCortical - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Cortical mesh to be used in rendering scene.
m_kCortical - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Calculating the mesh curvatures.
m_kCross - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kCubeTranslate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube: Orientation cube translation offset:
m_kCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Culling of this object (front-face, back-face, none)
m_kCuller - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Culling out-of-view objects:
m_kCuller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_kCuller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kCullPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
m_kCurrentColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The current color to use to create a new Widget.
m_kCurrentDir - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: current directory
m_kCurrentFont - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: current font
m_kCurrentStartList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kCurrentText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Current GLSL code for the widget program.
m_kCurrentTransform - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: current transformation based on mouseDragged event:.
m_kCurrentTransform - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: current zoom transformation
m_kCurrentVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kCurrentVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Current active voi contour.
m_kCurrentVOIGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: The current active VOI
m_kCutGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Button for cutting the mesh along the geodesic:.
m_kCutGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Button for cutting the mesh along the geodesic:.
m_kCylinder - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Cylinder renderer
m_kCylinder - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Cylinders is a sphere with a non-uniform scale based on the eigen vectors and values.
m_kCylinderLines - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Cylinder longitude/latitude lines.
m_kCylinderMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
m_kCylinderPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Scene-graph node for displaying correspondence points on the cylinder.
m_kD - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: BufferedImage Dimensions (power of two).
m_kData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.EdgeAttribute: support for application-specific data.
m_kData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.TriangleAttribute: support for application-specific data.
m_kData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.VertexAttribute: support for application-specific data.
m_kDecimalFormat - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Used to create text representations of numbers.
m_kDecimalFormat - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Used to create text representations of numbers.
m_kDefaultShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: DOCUMENT ME!
m_kDeleteList - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kDeleteList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kDescription - Variable in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: The description for this filter.
m_kDescription - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Description associated with this light.
m_kDescription - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_kDescription - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Annotation description
m_kDiff - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kDiffuse - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: DOCUMENT ME!
m_kDiffuse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: diffuse color
m_kDiffuse - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: diffuse color
m_kDiffuseColorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: diffuse color button
m_kDiffuseColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: diffuse color button
m_kDijkstraDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDijkstraDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the current Dijkstra path length.
m_kDijkstraDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDijkstraDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the previous Dijkstra path length.
m_kDijkstraDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDijkstraDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the total Dijkstra path length.
m_kDijkstraGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Directory for calculated images
m_kDirection - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Light direction.
m_kDirection - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: To avoid memory allocations.
m_kDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Ray2f: DOCUMENT ME!
m_kDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Segment2f: DOCUMENT ME!
m_kDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
m_kDisablePick - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kDisablePick - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Enable/disable correspondence picking
m_kDisplayButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kDisplayButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDisplayButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: ButtonGroup for the plane/surface display selection.
m_kDisplayButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: ButtonGroup for the different path display options.
m_kDisplayDijkstra - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDisplayDijkstra - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Display Dijkstra's path.
m_kDisplayedImage - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The current displayed texture, based on the value of m_iSlice.
m_kDisplayEuclidian - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kDisplayEuclidian - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Display the Euclidian path.
m_kDisplayGeodesic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Radio buttons for displaying the smoothed geodesic, dijkstra's path, or the euclidian path:.
m_kDisplayGeodesic - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Radio buttons for displaying the smoothed geodesic, dijkstra's path, or the euclidian path:.
m_kDisplayList - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: List of objects displayed in the scene.
m_kDisplayList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
m_kDisplayPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: The JSplitPane displaying the left and right eye views:.
m_kDisplayPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kDisplayPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Toggle displaying the plane on/off
m_kDisplaySlicesCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Turn display 3D Slices on/off
m_kDisplaySlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: User-control over the number of glyphs displayed in GPUVolumeRender
m_kDisplaySphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kDisplaySphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Toggle displaying the sphere on/off
m_kDisplaySurfaceCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Turn display 3D TriMesh Surface on/off
m_kDisplayVOICheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Turn display VOIs on/off
m_kDisplayVolumeCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Turn display volume on/off
m_kDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: vertex-vertex distances measured along edge paths.
m_kDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: vertex-vertex distances measured along edge paths.
m_kDrawGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Geodesic drawing interface Toggle button is down while points are added to the curve:.
m_kDrawGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Geodesic drawing interface Toggle button is down while points are added to the curve:.
m_kDrawingContext - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: ScreenCoordinateListener translates between the current image dimensions, canvas size, and mouse coordinates for correct mouse interaction.
m_kDrawOutlineButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Toggle button is down while the mouse is used to draw the sculpt outline.
m_kDrawOutlineButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Toggle button is down while the mouse is used to draw the sculpt outline.
m_kDstBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
m_kDTI - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Input Diffusion Tensor Image:
m_kDTI - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Input Diffusion Tensor Image:
m_kDTI - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Output DTI Image:
m_kDTIColorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: result image *
m_kDTIColorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Diffusion Tensor image.
m_kDTIDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: DTI renderer.
m_kDTIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kDTIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Diffusion Tensor image.
m_kDTIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Diffusion Tensor image.
m_kDTIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Tensor image.
m_kDTIPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Tensor file input path name text box.
m_kDWIImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: DWI Image 4D series of weighted diffusion images
m_kDWIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_kDWIImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: Diffusion Tensor image.
m_kDWIMaskImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Mask image for calculating the DTI image.
m_kDWIMaskPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Weighted Images Mask file input path name text box.
m_kDWIPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Diffusion Weighted Images .list file input path name text box.
m_kE0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kE0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kE0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_kE1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kE1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kE1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_kEDelete - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_kEdge - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator.HeapRecord: DOCUMENT ME!
m_kEigenValue - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
m_kEigenValueImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output EigenValue Image:
m_kEigenValueImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Input EigenValue Image:
m_kEigenValueImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: EigenValue image *
m_kEigenValueImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: EigenValue image
m_kEigenValueImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: EigenValue image *
m_kEigenVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: EigenVector values for displaying ellipsoids.
m_kEigenVectorImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output EigenVector Image:
m_kEigenVectorImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Input EigenVector Image:
m_kEigenVectorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Eigenvector image *
m_kEigenVectorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Eigenvector image
m_kEigenVectorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Eigenvector image *
m_kEigenVectorPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: EigenVector file input path name text box.
m_kEllipseMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Material properties of the ellipsoids.
m_kEMap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Edge map.
m_kEMap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_kEMap - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: map of .
m_kEMap - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_kEMap - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_kEmissive - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: emissive color
m_kEmissive - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: emissive color
m_kEmissiveColorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: emissive color button
m_kEmissiveColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: emissive color button
m_kEndPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kEndPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: End point on the curve.
m_kEndSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kEndSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Surface the End point is on.
m_kEntropyOut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kEntropyPoints2D - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kESet - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.VertexAttribute: set of .
m_kEstimatedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: estimated of the reconstructed image:.
m_kEuclidianDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Labels to indicate the path length between the picked points, in Euclidian distance, geodesic smoothed distance, and Dijkstra's path mesh distance.
m_kEuclidianDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the current Euclidian path length.
m_kEuclidianDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kEuclidianDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the previous Euclidian path length.
m_kEuclidianDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kEuclidianDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the total Euclidian path length.
m_kEuclidianGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kExclude - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kExtensionsVector - Variable in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: An array of possible extensions.
m_kExtent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Oriented bounding box of image, centered at (0,0,0), axes are stored as the columns of a rotation matrix, and half-widths are specified.
m_kExtractTriMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Button for extracting a TriMesh surface based on the ray-cast volume rendered in Surface mode
m_key - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_key - Variable in class gov.nih.mipav.model.algorithms.LSCM.Token
m_kEyeModel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_kEyeSep_Slider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Focal-length, (eye separation) slider.
m_kEyeWorld - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: eye point in world and model space.
m_kFAImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output Functional Anisotropy Image:
m_kFAImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Input FA Image:
m_kFAMaxThreshold - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kFAMinThreshold - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kFastMarcher - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The fast marching object used for region growing and for signed distance transforms.
m_kFBO - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_kFiberTractGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: For displaying the fiber bundle tracts in the orthogonal slice view:
m_kFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kFileName - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: current file name
m_kFilePoint - Variable in class gov.nih.mipav.view.PatientSlice: current slice positions in FileCoordinates:.
m_kFilterType - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Resample filter selection box.
m_kFinishClosedGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kFinishClosedGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Close and finish the Geodesic path.
m_kFinished - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kFinished - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The finished TriMesh
m_kFinishOpenGeodesicButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kFinishOpenGeodesicButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Finish the Geodesic path without closing.
m_kFirstPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: First point, for closing the Geodesic curve:.
m_kFirstPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: First point, for closing the Geodesic curve:.
m_kFlyPathBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Keep track of the FlyPathBehavior because it knows about the view from the path.
m_kFlyPathBehavior - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Fly path behavior.
m_kFlyPathGraph - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Keep reference to instance which describes the path.
m_kFlyPathGraph - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Keep reference to instance which describes the path.
m_kFlyPathGraph - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_kFlyPathGraphCurve - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kFlyPathGraphCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Fly path curve.
m_kFlyPathGraphCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Fly path curve.
m_kFlyPathGraphSamples - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the path extracted from the skeletonization.
m_kFlyThroughRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Flythrough renderer:
m_kFourCorners - Variable in class gov.nih.mipav.view.PatientSlice: The rotated non-axis aligned corners of the slice, from the RFA probe rotation in the SurfaceRender:.
m_kFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kFrameRateSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
m_kFromOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kFromOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_kFromOriginInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: G Matrix, equation 19:.
m_kGenerator - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: The ModelClodMesh object that generated the ModelTriangleMesh object, null otherwise.
m_kGeodesic_Finished - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: For finished paths, either open or closed:.
m_kGeodesic_Finished - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: For finished paths, either open or closed:.
m_kGeodesic_Working - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: LinkedLists to contain the working paths in progress, and all finished paths, open and closed for the smoothed geodesics and dijkstra's geodesics.
m_kGeodesic_Working - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: LinkedLists to contain the working paths in progress, and all finished paths, open and closed for the smoothed geodesics and dijkstra's geodesics.
m_kGeodesic_Working_Left - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kGeodesic_Working_Left - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: LinkedLists to contain the working paths in progress, and all finished paths, open and closed for the smoothed geodesics and dijkstra's geodesics.
m_kGeodesic_Working_Right - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kGeodesic_Working_Right - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: LinkedLists to contain the working paths in progress, and all finished paths, open and closed for the smoothed geodesics and dijkstra's geodesics.
m_kGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Group for drawing the Geodesic on the triangle mesh, assumes that the Group is created in the same branch tree as the triangle mesh surface, so when the mesh is transformed (rotated,scaled,translated) the polyline drawn and stored in the Group m_kSmoothedGeodesicGroup will be transformed in the same way:.
m_kGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: For drawing the geodesic lines on the triangle mesh:.
m_kGeodesicPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panel for drawing geodesic curves.
m_kGeodesicSmoothDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kGeodesicSmoothDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the current Geodesic path length.
m_kGeodesicSmoothDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kGeodesicSmoothDistanceValueLast - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the previous Geodesic path length.
m_kGeodesicSmoothDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kGeodesicSmoothDistanceValueTotal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Label displaying the total Geodesic path length.
m_kGeodesicToggleWireframe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: DOCUMENT ME!
m_kGeodesicToggleWireframe - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Toggle wireframe
m_kGeodesicVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: The final list of points in the Geodesic curve.
m_kGeodesicVertices - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: The final list of points in the Geodesic curve.
m_kGeometryArrayPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kGeometryArraySphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kGL - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
m_kGlyphs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Hashmap for multiple fiber bundles:
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
m_kGPUCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
m_kGPUVolumeRender - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights
m_kGraphCurve - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
m_kGraphSamples - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: DOCUMENT ME!
m_kGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Button group for the widget type:
m_kGroupList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Keeps track of the groups of polylines loaded.
m_kH - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: H Matrix, equation 19:.
m_kHandler - Variable in class gov.nih.mipav.model.file.FileXML: DOCUMENT ME!
m_kHeadOriginal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
m_kHeap - Variable in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch: A min-heap data structure used to keep track of the times so that the image element corresponding to the minimum time becomes the next processed boundary point.
m_kHelpButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Open the mosaic image help.
m_kHisto - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Histogram data for multi-histogram interface
m_kHistogramOutput - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kHistogramOutputB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kHistogramPoints2D - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kHistoTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for data:
m_kIgnore - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kImage - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Contains the image being skeletonized.
m_kImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Input volume.
m_kImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_kImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Buffer image for the volume renderer.
m_kImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Reference to ModelImage image
m_kImageA - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Current image A.
m_kImageA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Images to be renderer.
m_kImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: ModelImage A
m_kImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Reference to imageA
m_kImageActive - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Current active image.
m_kImageARedo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Single-level undo/redo for image masks, re-do-imageA:
m_kImageAUndo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Single-level undo/redo for image masks, undo-imageA:
m_kImageB - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Current image B.
m_kImageB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: ModelImage B
m_kImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Reference to imageB
m_kImageBackupA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup of ModelImage A
m_kImageBackupB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup of ModelImage B
m_kImageBRedo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Single-level undo/redo for image masks, re-do-imageB:
m_kImageBUndo - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Single-level undo/redo for image masks, undo-imageB:
m_kImageComponent - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Image component 3D reference which contains the 3D texture volume.
m_kImageComponent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Image component 2D to hold the volume renderer properties.
m_kImageDef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to new image creatd with computed deformation resulting from registration.
m_kImageDeformation - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Reference to an image to store the computed deformation.
m_kImageDim - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kImageDir - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kImageEffectDual - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kImageFrame - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: The ViewJFrameImage connect to this Graph, may be null.
m_kImageGM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
m_kImageGradMag - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_kImageLineMinDual - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageLineMinPass2a - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kImagePane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Split pane for displaying the canvases side-by-side:.
m_kImagePane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Split pane for displaying the canvases side-by-side:.
m_kImagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Canvas display panels:.
m_kImagePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Canvas display panels:.
m_kImagePointsDual - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageReg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Information and data for the registered image.
m_kImageReg - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to new image created with result of registration of source image.
m_kImageResult - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kImageResult - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Reference to an image to store the registered source image.
m_kImageSource - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kImageSource - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Reference to the original input image to use as the registration source.
m_kImageSpectrum1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Images to store FFT and Calc results.
m_kImageSpectrum2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kImageSpectrum3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kImageSrc - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: DOCUMENT ME!
m_kImageSrc - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to the input source image.
m_kImageTarget - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Reference to the original input image to use as the registration target.
m_kImageTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageTransform - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_kImageTransformd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kImageTransformd - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
m_kImageTrg - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: DOCUMENT ME!
m_kImageTrg - Variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Information and data for the target (reference) image.
m_kImageTrg - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to the selected target image.
m_kInclude - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kIndexKeyTmp - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: Instantiate once instead of each time a value key (Index) is needed.
m_kInitDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: surface inflation.
m_kInitDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: surface inflation.
m_kInsidePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Panel container.
m_kIntensityRGB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: RGB intensity map for color images only.
m_kIntensityTF - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Text box for setting the intensity level for extraction.
m_kInterface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Reference to the containing JPanel.
m_kInvertOutlineButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Button for inverting the sculpt region.
m_kInvertOutlineButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button for inverting the sculpt region.
m_kIPDSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Opacity slider.
m_kLabelBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelBranch - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Branch label.
m_kLabelDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: View direction label.
m_kLabelDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Path distance label.
m_kLabelFileName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kLabelFileName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Automatically inserted by JBuilder Designer.
m_kLabelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Automatically inserted by JBuilder Designer.
m_kLabelFileNameImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kLabelIterationsPass1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kLabelIterationsPass2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kLabelOptionsPass1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kLabelOptionsPass2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kLabelOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Orientation label.
m_kLabelPosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Current path position label.
m_kLabelPosX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for slider X position.
m_kLabelPosX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for slider X position.
m_kLabelPosY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for slider Y position.
m_kLabelPosY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for slider Y position.
m_kLabelPosZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for slider Z position.
m_kLabelPosZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for slider Z position.
m_kLabelStepGaze - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kLabelStepGaze - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Step gaze label.
m_kLabelTrgX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for X light target position.
m_kLabelTrgX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for X light target position.
m_kLabelTrgY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for Y light target position.
m_kLabelTrgY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for Y light target position.
m_kLabelTrgZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Label for Z light target position.
m_kLabelTrgZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Label for Z light target position.
m_kLabelX - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: x-axis label:
m_kLabelX - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: x-axis label:
m_kLabelX - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: x-axis label:
m_kLabelXDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kLabelXDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kLabelY - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: y-axis label:
m_kLabelY - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: y-axis label:
m_kLabelY - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: y-axis label:
m_kLastCommand - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Last command, used for determining the action the color chooser is associated with.
m_kLastCut - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kLastCut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Previous cut mesh
m_kLastFinished - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kLastFinished - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Previous mesh with a finished curve
m_kLatLonLines - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kLatLonLines - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Toggle display of latitude/longitude lines on/off.
m_kLeftCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Left-eye view canvas:.
m_kLeftImagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Left Image Panel, holds the canvas for the left-eye view:.
m_kLeftSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget
m_kLevelDetail - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: surface level of detail:.
m_kLevelDetail - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML: surface level of detail:.
m_kLevelSetEvolver - Variable in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The level-set evolver.
m_kLight - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Lighting in the scene.
m_kLightColor - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Light color.
m_kLightRoot - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent of all the light bulbs.
m_kLightRoot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs: Parent of all the light bulbs.
m_kLightsControl - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Light dialog for when the user clicks the light button.
m_kLightSet - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: used for lighting-based rendering.
m_kLightShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Lighting effect.
m_kLightShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_kLightShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
m_kLightShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Surface light shader for rendering objects without volume-texture mapping.
m_kLightShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Surface shader effect.
m_kLightShaderTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kLightsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Light panel
m_kLinesMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Material properties of the tract lines.
m_kList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: DOCUMENT ME!
m_kList - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Annotation list
m_kListArrayPointKey - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Storage for the arrays of keys and , positions for each curve.
m_kListArrayPointPosition - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: DOCUMENT ME!
m_kListBranchChildList - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Each item is a TreeMap instance which stores all of the child branches for a given branch.
m_kListBranchParentIndex - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Each item is an Integer which contains the index of the parent branch to which this branch is connected.
m_kListBranchParentNormalizedDist - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Each item in a Float which contains the normalized path distance (in range [0,1]) for the parent branch where this branch started.
m_kListCurvePosition - Variable in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphCurve: Storage for the arrays of position for each curve.
m_kLoadButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kLocalCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
m_kLocalCropLower - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Lower Crop Bounding Box in Patient Coordinates:.
m_kLocalCropUpper - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Upper Crop Bounding Box in Patient Coordinates:.
m_kLocalImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: A re-oriented version of the active image, re-oriented so it matches the currently displayed image orientations in either the tri-planar or volume render views.
m_kLocalPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
m_kLocalScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kLogicOp - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend: The combo box for the Logic Operation mode to display.
m_kLowerSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The lower-sphere control point of the widget, controls the shape/size of the widget
m_kLUT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: ModelLUT for getModelImageColor w/LUT changes:
m_kLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: ModelLUT
m_kLUTa - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kLUTa - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Color LUT based on Volume Data
m_kLUTa - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: LUT of input image *
m_kLUTConvexity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kLUTConvexity - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: LUT for the triangle mesh convexity colors.
m_kLUTCurvature - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: local reference to ModelLUT.
m_kLUTCurvature - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: local reference to ModelLUT.
m_kLUTImageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kLUTImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Volume data for LUT
m_kLUTMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: color look-up table Texture:
m_kLUTName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: color look-up table name.
m_kLUTNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kMainPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Split pane for displaying the rendered spheres above the interface:.
m_kMainPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: The JSplitPane displaying different views and the user-interface:.
m_kMainPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Split pane for displaying the rendered spheres above the interface:.
m_kMap - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: Mapping of Index(row,col).
m_kMap - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: map to convert RGB channel values to intensity.
m_kMap - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: DOCUMENT ME!
m_kMap - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: map to convert RGB channel values to intensity.
m_kMap - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Map to convert intensity values to colors.
m_kMaskColorVector - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Surface mask color vector. - TO BE MOVED - redesigned
m_kMaskImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Mask Image for masking brain regions during tensor calculation:
m_kMaskImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: ModelImage used to generate the fly path.
m_kMaskVector - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Surface mask vector.- TO BE MOVED - redesigned.
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D: Material properties of the surface:.
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D: Material properties of the surface:.
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: store the Material properties of the mesh:
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM: Material properties of the surface:.
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM: Material properties of the surface:.
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Material properties for Volume Surface (and Composite Surface) mode
m_kMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Surface material properties.
m_kMaterialNew - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Materials for new vales and backup:.
m_kMaterialNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Materials for new vales and backup:.
m_kMaterialPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Window display panels: Material properties buttons/slider panel:.
m_kMaterialPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Window display panels: Material properties buttons/slider panel:.
m_kMaterialSave - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Saved Material for backup
m_kMaterialSave - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Saved Material for backup
m_kMaterialStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceRefXML: array of strings representing the tags under in the xml schema.
m_kMaterialStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceXML: array of strings representing the tags under in the xml schema.
m_kMaxAngle - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kMaxBB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kMaxLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kMDir - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
m_kMeanCurvaturesLUT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kMeanCurvaturesLUT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: kMean curvature LUT.
m_kMeanCurvaturesLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: kMean curvature LUT.
m_kMesh - Variable in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D: Surface triangle mesh:.
m_kMesh - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: the triangle mesh corresponding to the current level of detail.
m_kMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: The input triangle mesh to be segmented.
m_kMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
m_kMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Volume proxy-geometry (cube)
m_kMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: TriMesh
m_kMeshBranchRoot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: BranchGroups for the Meshlines, for deleting and recreating the meshlines when the user changes the number of latitude and longitude lines:.
m_kMeshCurvatures - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kMeshLines - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: TriMesh longitude/latitude lines.
m_kMeshLinesBranchRoot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kMeshPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Scene-graph node for displaying correspondence points on the TriMesh surface.
m_kMeshStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceXML: array of strings representing the tags under in the xml schema.
m_kMiddleSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The middle-sphere control point of the widget, controls the color transfer function inside the widget.
m_kMinBB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kMinDegree - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: If there is no Root node, this is the Node with the smallest number of parent nodes, and serves as a default Root for the Graph.
m_kMinLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kMirrorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kModelLUT - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: DOCUMENT ME!
m_kModified - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kModified - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Current modified mesh
m_kMOrig - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Ray in box (model) coordinates.
m_kMouseEvent - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Reference to the mousePressed event:.
m_kMouseEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kMouseEvent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kMouseOffset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Mouse offset used for dragging the widget.
m_kMouseOffset - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: m_kMouseOffset is used to determine movements.
m_kMouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kMouseTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Mouse translate behavior.
m_kMouseZoom - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Mouse zoom behavior.
m_kMoving - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kMultiHistogram - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Displays the 2D Histogram and widgets:
m_kN - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
m_kN0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kN1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kN1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: temporary variables to avoid 'new' calls.
m_kNameA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kNameB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kNewCenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_kNewColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: New Colors link list.
m_kNewColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: New Colors link list.
m_kNewNormals - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: New normal link list.
m_kNewNormals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: New normal link list.
m_kNewTexCoords - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: New texCoords link list.
m_kNewTexCoords - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: New texCoords link list.
m_kNewTriangles - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: new triangle link list.
m_kNewTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: new triangle link list.
m_kNewVerts - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: New vertices link list.
m_kNewVerts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: New vertices link list.
m_kNode - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode
m_kNormal - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: DOCUMENT ME!
m_kNormal - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: DOCUMENT ME!
m_kNormal - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: To avoid memory reallocations.
m_kNormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Data storage for normals:
m_kNormalColorPathUnvisited - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kNormalColorPathUnvisited - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Color for the parts of the path that have not yet been visited (Dark Green)
m_kNormalColorPathUnvisited - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Color for the parts of the path that have not yet been visited (Dark Green)
m_kNormalColorPathVisited - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: These are the colors to use when rendering the normal/selected branch that is unvisited/visited.
m_kNormalColorPathVisited - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Color for the parts of the path that have been visited (Light Green)
m_kNormalizeB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: DOCUMENT ME!
m_kNormalizeB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_kNormalizeG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: DOCUMENT ME!
m_kNormalizeG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: DOCUMENT ME!
m_kNormalizeR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: Factor used to scale the computed sum along each ray for the purpose of normalizing the integral.
m_kNormalizeR - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Factor used to scale the computed sum along each ray for the purpose of normalizing the integral.
m_kNormalMapTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for normal map:
m_kNumLatText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kNumLatText - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Text box for entering the number of latitude lines.
m_kNumLonText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kNumLonText - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Text box for entering the number of longitude lines.
m_kObjBoxSliceProbe_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice BOXES:
m_kObjBoxSliceProbe_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice BOXES:
m_kObjPlaneProbe_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice PLANES:
m_kObjPlaneProbe_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice PLANES:
m_kObjRootBG - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The BranchGroup root of the scene managed by the simple universe.
m_kOffsetNeighborsGradient - Variable in class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Index offsets used by the getIndexNeighborsGradient method.
m_kOldTransform - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Accumulated transformation prior to current mouseDrag:.
m_kOpacity - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: surface opacity:.
m_kOpacity - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML: surface opacity:.
m_kOpacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Surface opacity value.
m_kOpacityMap_GM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: GraphicsImage contains GM opacity transfer function data:
m_kOpacityMapTarget_GM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture contains texture filter modes and GraphicsImage for opacity transfer function:
m_kOpacityRGB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: RGB opacity map for color images only.
m_kOpenB0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput
m_kOpenReferenceButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Open reference image:.
m_kOpenTileButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Open tile image:.
m_kOptions - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: These are the setup options passed to the constructor which we need to keep track of in case we need to use them outside the constructor.
m_kOptions - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Image option panel.
m_kOptions - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Setup options.
m_kOptions - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Image option panel.
m_kOptionsPass1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Options to use for a first pass of registration.
m_kOptionsPass1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to parameters to use for first pass of registration.
m_kOptionsPass2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Options to use for a second pass of registration.
m_kOptionsPass2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to parameters to use for optional second pass of registration.
m_kOrderedGroup - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Root order group of the image scene graph.
m_kOrderedGroupSlicesCoarse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: DOCUMENT ME!
m_kOrderedGroupSlicesFine - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: The slicing through the volume will be contained in an OrderedGroup to ensure that the slices are rendered back-to-front for correct blending effect.
m_kOrient - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: DOCUMENT ME!
m_kOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Ray2f: DOCUMENT ME!
m_kOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Segment2f: DOCUMENT ME!
m_kOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
m_kOriginal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Data members for the Geodesic Class: Triangle mesh:.
m_kOriginal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Data members for the Geodesic Class: Triangle mesh:.
m_kOriginalSourceImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: source image to be reconstructed!
m_kOutline - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Polyline outlines the widget in red when selected, or blue when non selected.
m_kOutputFile - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: The name of the tract output file, specified by the user.
m_kOutputImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
m_kOutputMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
m_kP0 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: the intersection points of ray with box.
m_kP00 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: To avoid memory reallocations.
m_kP01 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_kP1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: the intersection points of ray with box.
m_kP10 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_kP11 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_kPaintColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_kPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Reference to the JPanelGeodesic:.
m_kPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Reference to the JPanelSurface:
m_kPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: BrainSurfaceFlattener User-Interface panel
m_kPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Surface panel.
m_kPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Reference to the JPanelGeodesic:.
m_kPanelBrainsurfaceFlattenerLUT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kPanelBrainsurfaceFlattenerLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: LUT Panel based on surface curvature.
m_kPanelSurface - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: surface panel reference.
m_kParameters - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The parameters associated with level-set evolution.
m_kParameters - Variable in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The parameters associated with level-set evolution.
m_kParent - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Reference to the parent frame:.
m_kParent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Parent class:.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Parent user-interface and display frame.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Parent user-interface and display frame.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Parent class:.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Parent user-interface and display frame.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Parent user-interface and display frame.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: A reference to the VOIManagerInterface
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Reference to the parent frame.
m_kParent - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Parent user-interface and display frame.
m_kParentDir - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: paren tdir *
m_kParentDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
m_kParentDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: parent directory for the DTI output images.
m_kParentFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kPathPositionTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: For drawing the flythru path in the triangle mesh:.
m_kPatientPoint - Variable in class gov.nih.mipav.view.PatientSlice: current slice positions in local coordinates:.
m_kPatientPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kPatientPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kPatientSlice - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: PatientSlice contains all the Patient Coordinate System view-specific data for rendering this component:
m_kPatientSlice - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: PatientSlice contains all the Patient Coordinate System view-specific data for rendering this component:
m_kPatientSlice - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: PatientSlice contains all the Patient Coordinate system view-specific data for rendering this component:
m_kPatientSlice - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: PatientSlice contains all the Patient Coordinate system view-specific data for rendering this component:.
m_kPatientSlice - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: PatientSlice interfaces with the ModelImage class to render the image w/LUT changes for this component.
m_kPBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Volume renderer progress bar:.
m_kPBar - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Volume renderer progress bar:.
m_kPDiff - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
m_kPickButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kPickButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Picking button group -- switch between picking correspondence points and the puncture triangle.
m_kPickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kPickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Used for picking.
m_kPickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: PickCanvas, created by the class that creates the triangle mesh and the geodesic group:.
m_kPickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: PickCanvas, for triangle picking.
m_kPickColors - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Color of the first and sucessive points on the Geodesic curve:.
m_kPickColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Color of the first and successive points on the Geodesic curve:.
m_kPickCorrespondence - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kPickCorrespondence - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Correspondence point picking.
m_kPicked - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Currently picked, or active part of this widget, may be the mesh or one of the control-point spheres.
m_kPicker - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: For processing picking:
m_kPickPuncture - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kPickPuncture - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Puncture triangle picking.
m_kPlaneMax - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_kPlaneMin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: DOCUMENT ME!
m_kPointerButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: The Default pointer button is set from outside this class if the default pointer button is not part of the VOI toolbar, or if the VOI toolbar is not displayed.
m_kPointLight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kPointNormal - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_kPointNormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: Normal vector for the annotated point
m_kPointPosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_kPointPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item: 3D coordinates for the annotated point
m_kPoints - Variable in class gov.nih.mipav.model.structures.VOIPolyLineSlice: List of VOIPoint that make up the polyline.
m_kPolygonOffset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: PolygonOffset blending for this object.
m_kPopupPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Popup Menu for VOIPoints.
m_kPopupVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Popup Menu for VOIs (non-point).
m_kPos - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect
m_kPosition - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Properties shared by point and spot lights.
m_kPosition - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: By default, vertex diffuse and specular colors are optional.
m_kPosition - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: DOCUMENT ME!
m_kPositionSum - Variable in class gov.nih.mipav.model.structures.VOIBase
m_kPostfix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Image name post-fix typically either 'A' or 'B'
m_kPPixelLighting - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kPreviousSnake - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Previous snake polygon:.
m_kPreviousStartPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kPreviousStartPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Previous start point on the new line segment.
m_kProbeTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The Transform3D used to position the planes based on the Probe position and angle.
m_kProbeTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The Transform3D used to position the planes based on the Probe position and angle.
m_kProbeTwistLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: DOCUMENT ME!
m_kProbeTwistSlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Rotation/Twist around the direction of the probe:.
m_kProgress - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Green Progress bar at the top right hand corner of the ViewJFrameVolumeView window.
m_kPSFImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: point spread function image:.
m_kPSFImageCopy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Used for color image.
m_kPShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
m_kPShaderCMP - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: PixelShader program and data for Composite mode:
m_kPVertexLighting - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kPVWMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kQ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Q Matrix, equation 24 (inverse calculated once per image sequence on the inital frame):.
m_kRadioGroupMaxRenExtent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: DOCUMENT ME!
m_kRadioMaxRenExtent_1024 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: DOCUMENT ME!
m_kRadioMaxRenExtent_128 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: DOCUMENT ME!
m_kRadioMaxRenExtent_256 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: DOCUMENT ME!
m_kRadioMaxRenExtent_512 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: DOCUMENT ME!
m_kRadioMaxRenExtent_64 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Radio Button Group for the Render Image Target size of the raycast rendered image.
m_kRadioSliceAdjacent - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kRadioSliceReference - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: DOCUMENT ME!
m_kRAImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output RA (Relative Anisotropy) Image:
m_kRawFormat - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: raw image format read from the .list file:
m_kRawFormat - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
m_kRawFormat - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: raw image format read from the .list file:
m_kRawImageFormat - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Format of the raw data: (float, int, dicom, etc.)
m_kReconstructTracts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Checkbox for tract reconstruction.
m_kRecordToggle - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kRedoCommands - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: List of re-do commands
m_kRedoList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Saved VOI states for re-do.
m_kReferenceAlpha - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: For blending between refernce and transformed tile images:.
m_kReferenceAlphaBackup - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: For blending between refernce and transformed tile images:.
m_kReflect - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: To avoid memory re allocations.
m_kRegisterButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Initialize and start the registration based on how the user positioned the two images:.
m_kRegMeasure - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Reference to the particular cost measure to use for this registration.
m_kRegMeasure - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Defines the cost measure for comparing the target image with the registered image.
m_kRegMeasure - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Reference to concrete implementation of the RegistrationMeasure abstract class which defines the particular measure to use during registration.
m_kRemoveTriangles - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Removed triangle link list.
m_kRemoveTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Removed triangle link list.
m_kRenderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
m_kRendererImageDataA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Manages the renderer data for each image.
m_kRendererImageDataB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kRenderSurface - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Parent render frame reference.
m_kResolutions - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kRFA_BranchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Branch group for the RFA indicator point.
m_kRFACoordMaps - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Texture mapping for the RFA probe rotation:
m_kRFACoordMaps - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Texture mapping for the RFA probe rotation:
m_kRGBT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: ModelRGB for getModelImageColor w/RGB LUT changes:
m_kRGBT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: ModelRGB
m_kRGBT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_kRGBTA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: model of a RGB Table.
m_kRGBTB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
m_kRGStereo - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: BufferedImage containing the Anagyphy stereo image:.
m_kRightCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Right-eye view canvas:.
m_kRightImagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Right Image Panel, holds the canvas for the right-eye view:.
m_kRotate - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Used to rotate the initial mesh into the same orientation as the data.
m_kRotate - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
m_kRotate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
m_kRotate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
m_kRotation - Variable in class gov.nih.mipav.model.structures.VOIPoint
m_kRotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Mouse rotation.
m_kRotationInverse - Variable in class gov.nih.mipav.model.structures.VOIPoint
m_kS - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Sin matrix: = sin( 2*pi*i/n).
m_kSaveButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Save the mosaic image:.
m_kSaveButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kSavedImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_kSaveSculptButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Button to save the sculpt image.
m_kSaveSculptButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button to save the sculpt image.
m_kScene - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Scene graph root node:.
m_kScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: the scene-graph node containing the rendered object.
m_kSceneRoot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: These are part of the scene and view.
m_kSceneTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Reference to the SceneImage texture:
m_kSceneToWorld - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kScratchTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for GPU computations:
m_kSculptImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: m_kSculptImage is a screen shot of the canvas image.
m_kSculptImageOpaque - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
m_kSculptor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: New sculpting object for WM-based sculpting.
m_kSculptPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panel for volume sculpting.
m_kSelectColorPathUnvisited - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSelectColorPathUnvisited - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Color for selecting previously-unvisited parts of the path at a branch (Dark Red)
m_kSelectColorPathVisited - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSelectColorPathVisited - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Color for selecting previously-visited parts of the path at a branch (Red)
m_kShaders - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Hashmap for multiple fiber bundles:
m_kShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item: DOCUMENT ME!
m_kShapeMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kShapePlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kShapeSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kShininessSlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Shininess slider.
m_kShininessSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Shininess slider.
m_kSimpleImageSource - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
m_kSkeleton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This it skeletonization of the binary volume.
m_kSkeleton - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: 3D Skeleton of the ModelImage.
m_kSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: 3D Slice renderer.
m_kSliderLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kSliderPosX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light x position slider.
m_kSliderPosX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light x position slider.
m_kSliderPosY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light y position slider.
m_kSliderPosY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light y position slider.
m_kSliderPosZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light z position slider.
m_kSliderPosZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light z position slider.
m_kSliderTrgX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light x target position slider.
m_kSliderTrgX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light x target position slider.
m_kSliderTrgY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light y target position slider.
m_kSliderTrgY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light y target position slider.
m_kSliderTrgZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light z target position slider.
m_kSliderTrgZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light z target position slider.
m_kSmoothedGeodesicGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Root group for different path.
m_kSoftwareLightSet - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Used to compute software lighting of composite texture volume.
m_kSoftwareLightSet - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Used to compute software lighting of composite texture volume.
m_kSoftwareLightSet - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Set of lights to use for software-based lighting.
m_kSoftwareMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: DOCUMENT ME!
m_kSoftwareMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: DOCUMENT ME!
m_kSoftwareMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Material properties to use for software-based lighting.
m_kSourceBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kSourceGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: DOCUMENT ME!
m_kSourceImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: source image to be reconstructed!
m_kSourceRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: For color images: the source is converted to gray for the deconvolution.
m_kSpecular - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty: DOCUMENT ME!
m_kSpecular - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Specular color component
m_kSpecular - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Specular color component
m_kSpecularColorButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Specular color button
m_kSpecularColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Specular color button
m_kSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Sphere renderer.
m_kSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Ellipsoids is a sphere with a non-uniform scale based on the eigen vectors and values.
m_kSphereLines - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Sphere longitude/latitude lines.
m_kSphereMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
m_kSpherePoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Scene-graph node for displaying correspondence points on the sphere.
m_kSrcBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
m_kStartEndList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: link list to hold the path.
m_kStartEndList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: link list to hold the path.
m_kStartPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Start and End points -- pair of points for which a Geodesic is calculated, must be in TriangleMesh coordinates:.
m_kStartPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Start and End points -- pair of points for which a Geodesic is calculated, must be in TriangleMesh coordinates:.
m_kStartSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kStartSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: TriMesh containing the start point on the new line segment
m_kStereoButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Stereo render button, launches the JStereoWindow for viewing the ModelTriangleMesh in stereo:.
m_kStereoCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Stereo canvas:.
m_kStereoModeCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: The combo box for the polygon mode to display.
m_kStereoPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: The JSplitPane displaying the left and right eye views and the stereo view:.
m_kStereoPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Stereo Image Panel, holds the canvas for the Anaglyph stereo view:.
m_kStereoShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Texture-mapped polygon for displaying the Anaglyph stereo image as a texture:.
m_kSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the surface geometry and its properties.
m_kSurface - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kSurface - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: Reference to the SurfaceRender containing the TextureVolume:.
m_kSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: The surface to fly through.
m_kSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Current TriMesh surface
m_kSurfaceBackup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kSurfaceBackup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Backup surface.
m_kSurfaceClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
m_kSurfaceCurveSegments - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSurfaceDir - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kSurfaceGeometry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSurfaceGeometryInfo - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: This is the Java3D geometry for the surface.
m_kSurfaceImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Data storage for surfaces:
m_kSurfaceMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kSurfaceMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSurfacePaint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Paint tool-bar (contained in the SurfacePaint class)
m_kSurfacePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Surface panel.
m_kSurfacePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Surface panel
m_kSurfaceShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
m_kSurfaceState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kSurfaceStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceRefXML: array of strings representing the tags under in the xml schema.
m_kSurfaceStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceXML: array of strings representing the tags under in the xml schema.
m_kSurfaceTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for surfaces:
m_kSurfaceTextureButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Opens SurfaceTexture dialog:.
m_kSurfaceTextureButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Opens SurfaceTexture dialog:.
m_kSwitch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: This is the only node attached to this TransformGroup.
m_kSwitch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: This is the only node attached to the TransformGroup.
m_kSwitchDisplay - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Switch between displaying the Sphere and the Plane:.
m_kSwitchDisplay - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: DOCUMENT ME!
m_kSwitchLinesMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains the latitude/longitude renderings for the mesh which can be enabled/disabled.
m_kSwitchLinesPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains the latitude/longitude renderings for the plane which can be enabled/disabled.
m_kSwitchLinesPlaneBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kSwitchLinesSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains the latitude/longitude renderings for the sphere which can be enabled/disabled.
m_kSwitchLinesSphereBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kT2Image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: T2 image.
m_kT2Image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Anisotropy image *
m_kTarget - Variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Light shooting target position.
m_kTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTempImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
m_kTempLocalViewTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: DOCUMENT ME!
m_kTempPlane - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: These are declared in the class to avoid allocating temporary instances each call into methods of this class.
m_kTempRotateMatrix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: DOCUMENT ME!
m_kTempWorldToLocalTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: These are declared in the class to avoid allocating temporary instances each call into methods of this class.
m_kTexCoordGeneration - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: in any direction.
m_kTexCoordGenerationAxisAligned - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Default axis-aligned texture coordinate generation function.
m_kTextBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextBranch - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Current branch text box.
m_kTextBranchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Branch group to hold the texture image.
m_kTextDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: View direction text box.
m_kTextDistance - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Distance along path text box.
m_kTextEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kTextMaxNumBranches - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: maximum number of branches created for the endoscopy view.
m_kTextMaxNumBranches - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: maximum number of branches created for the endoscopy view.
m_kTextMinBranchLength - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: minimum branch length.
m_kTextMinBranchLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: minimum branch length.
m_kTextOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextOrientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Orientation text box.
m_kTextPercentBSplineNumControlPoints - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: BSpline control points fraction of branch samples.
m_kTextPercentBSplineNumControlPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: BSpline control points fraction of branch samples.
m_kTextPosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Position text box.
m_kTextPosX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: X position text field.
m_kTextPosX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: X position text field.
m_kTextPosY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Y position text field.
m_kTextPosY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Y position text field.
m_kTextPosZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Z position text field.
m_kTextPosZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Z position text field.
m_kTextStepGaze - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: DOCUMENT ME!
m_kTextStepGaze - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Step gaze text box.
m_kTextTransformGroup - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Transform group to hold the texture images.
m_kTextTrgX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: X target position text field.
m_kTextTrgX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: X target position text field.
m_kTextTrgY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Y target position text field.
m_kTextTrgY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Y target position text field.
m_kTextTrgZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Z target position text field.
m_kTextTrgZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Z target position text field.
m_kTexture - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The 2D texture for the texture-mapped polygon.
m_kTexture - Variable in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: 3D texture of the entire volume.
m_kTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Texture used in the histogram.
m_kTextureA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTextureB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTextureID - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: OpenGL Texture ID containing the volume data.
m_kTextureSculptor - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: DOCUMENT ME!
m_kTextureXY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: 2D texture of the volume renderer.
m_kTileAlpha - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: For blending between refernce and transformed tile images:.
m_kTMap - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: map of .
m_kTMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Maximum texture coordinates for the 2D histogram.
m_kTMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
m_kTMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Minimum texture coordinates for the 2D histogram.
m_kTMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The bounds on the 2D Histogram texture coordinates used to display the 2D Histogram.
m_kToggleSelectedButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Toggle which image is currently selected:.
m_kToOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kToOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
m_kToOriginInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTraceImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output Trace Image (before diagonalization of diffusion tensor):
m_kTractFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Tract input file.
m_kTractList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: The list box in the dialog for fiber bundle tracts.
m_kTractPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Fiber bundle tract file input path name text box.
m_kTracts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Hashmap for multiple fiber bundles:
m_kTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Transform created for multiple use to avoid new'ing it each time.
m_kTransformDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: View direction component for this view transform.
m_kTransformGroupActive - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Currently selected transform that gets modified by the handler for the keyboard behavior.
m_kTransformGroupMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kTransformGroupPlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kTransformGroupPoseMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains all of the cortical mesh related nodes in the scene which can be manipulated as a group.
m_kTransformGroupPosePlane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains all of the plane related nodes in the scene which can be manipulated as a group.
m_kTransformGroupPoseSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: This node contains all of the sphere related nodes in the scene which can be manipulated as a group.
m_kTransformGroupSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
m_kTransformOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Orientation (yaw/pitch) component for this view transform.
m_kTransformOut - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTransformPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
m_kTransformPosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Position-only component for this view transform.
m_kTransformRot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
m_kTranslate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Scene translation, centers the scene:
m_kTranslate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: local translation in the parent scene-graph.
m_kTranslationTG - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Group dictating how the plane is translated.
m_kTriangleMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kTriangleMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Geometry for the rendering of the cortical mesh is maintained here so that the scene can be updated when the mesh is inflated.
m_kTriangleMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Keep a copy of the loaded triangle mesh and any other properties associated with the surface.
m_kTriangleMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.SurfaceLoaderSUR: Triangle mesh representation for the surface.
m_kTriangleMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Brain Surface TriMesh
m_kTSet - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.EdgeAttribute: set of .
m_kTSet - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.VertexAttribute: set of .
m_kTubes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Hashmap for multiple tube type fiber bundles:
m_kTubesMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Material properties of the Tubes.
m_kTwist - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Transform3D to twist the volume about the Probe axis:.
m_kType - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML: Type keyword for the surface:.
m_kType - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML: Type keyword for the surface:.
m_kUI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Used for scripting and to access the currently registered images.
m_kUndoAllButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM
m_kUndoButton - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: Undo the last registration for the mosaic image:.
m_kUndoCommands - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: List of undo commands
m_kUndoList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Saved VOI states for undo.
m_kUndoSculptButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Button to undo the sculpt and restor the original volume.
m_kUndoSculptButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Button to undo the sculpt and restor the original volume.
m_kUniverse - Variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: SimpleUniverse:.
m_kUniverse - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender: The SimpleUniverse object which is the parent of everything else in the scene.
m_kUniverse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: The simple universe contains a single canvas, a viewing platform, and a scene graph.
m_kUpperSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The upper-sphere control point of the widget, controls the shape/size of the widget
m_kUseEllipsoids - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Checkbox for switching between polylines and ellipsoids.
m_kUseVOICheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: When selected, only tracts that intersect the VOI are displayed.
m_kUseVolumeColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Checkbox for turning on/off volume color for the polylines.
m_kV - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Avoid memory reallocations.
m_kV - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Intersection of ray with view plane.
m_kV0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kV0 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: temporary variables to avoid 'new' calls.
m_kV0 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: temporary variables to avoid 'new' calls.
m_kV1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kV1 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: temporary variables to avoid 'new' calls.
m_kV1 - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: temporary variables to avoid 'new' calls.
m_kV2 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Temporary variables to avoid 'new' calls.
m_kV2 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: temporary variables to avoid 'new' calls.
m_kV3 - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: temporary variables to avoid 'new' calls.
m_kVCross - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: temporary variables to avoid 'new' calls.
m_kVDelete - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: DOCUMENT ME!
m_kVelocity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Velocity vector (either the initial user-defined guess, or the calculated velocity (new snake center - previous snake center):.
m_kVertexColor3Shader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox: The Pre - ShaderEffect for the bounding box.
m_kVertexColor3Shader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: ShaderEffect for displaying the clip planes.
m_kVertexProperty - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: DOCUMENT ME!
m_kView - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Values updated in the initView method which must be called by all lights (except AmbientLight).
m_kView - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: DOCUMENT ME!
m_kView - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Applet that is associated with the controls in this frame.
m_kView - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Brain Surface Renderer.
m_kView - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Renderer for displaying the scene-graph.
m_kViewDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Current view direction along the path.
m_kViewDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Current view direction along the path.
m_kViewPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Current view position along the path.
m_kViewPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Current view position along the path.
m_kViewRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_kViewUp - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Current view up vector.
m_kViewUp - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Current view up vector.
m_kViewup1 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: The desired view up vector is a normalized average of these two orthogonal axes vectors.
m_kViewup1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: The desired view up vector is a normalized average of these two orthogonal axes vectors.
m_kViewup1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_kViewup2 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: DOCUMENT ME!
m_kViewup2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: For calculating the view up vector.
m_kViewup2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
m_kVMap - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: map of .
m_kVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVOIAttr - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kVOIAttr - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kVOIDialog - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: VOI Properties dialog -- from the popup menu or drop-down menu.
m_kVOIHausdorffDistanceDialog - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
m_kVOIInterface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
m_kVOIInterface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kVOIInterface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
m_kVOILine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVOIList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: The list box in the dialog for 3D VOIs.
m_kVOIList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kVOILogicalOperationsDialog - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
m_kVOIManagers - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: List of VOIManagers, one per canvas displayed.
m_kVOIParamsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kVOIPreShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVOIShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVOITicMarks - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVOIToolbar - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Reference to the VOI toolbar.
m_kVolOpacityPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Opacity panel.
m_kVolume - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Data storage for volume:
m_kVolume4DGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
m_kVolumeBlendSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Volume alpha-blending slider.
m_kVolumeBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Volume bounding box renderer.
m_kVolumeClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Clipping planes renderer
m_kVolumeCube - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Orientation cube renderer
m_kVolumeDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kVolumeGM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Data storage for volume gradient magnitude:
m_kVolumeGMTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for volume gradient magnitude data:
m_kVolumeImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kVolumeImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_kVolumeImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: VolumeImage for ModelImageA, contains data and textures.
m_kVolumeImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: a reference to the VolumeImage containing the shared data and textures for display.
m_kVolumeImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Shared volume data and textures.
m_kVolumeImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Shared volume data and textures.
m_kVolumeImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: VolumeImage contains data and textures for ModelImage A.
m_kVolumeImageA_New - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kVolumeImageA_Old - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kVolumeImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: VolumeImage for ModelImageB, contains data and textures.
m_kVolumeImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: a reference to the VolumeImage containing the shared data and textures for display.
m_kVolumeImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Shared volume data and textures.
m_kVolumeImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Shared volume data and textures.
m_kVolumeImageB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: VolumeImage contains data and textures for ModelImage B.
m_kVolumeImageB_New - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kVolumeImageB_Old - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
m_kVolumeImageNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kVolumeLayout - Variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Describes the organization of the volume data in a linear array.
m_kVolumeLayout - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Describes the organization of the volume data in a linear array.
m_kVolumeLayout - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: 3D Layout of the ModelImage.
m_kVolumeLUTNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kVolumeMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kVolumePoint - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Cursor 3D point in FileCoordinates.
m_kVolumePreShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices: ShaderEffect for the pre-render stage the bounding-box and the slice share the same pre-render effect.
m_kVolumePreShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: ShaderEffect for the plane bounding-boxes.
m_kVolumePreShaderTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
m_kVolumePreShaderTransparent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
m_kVolumePt - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
m_kVolumeRayCast - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: GPU-based ray cast renderer.
m_kVolumeRenderer - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Reference to the ShearWarpVolumeRenderer which hold this as an instance.
m_kVolumeRenderer - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: The volume renderer that is currently rendering the volume data:.
m_kVolumeSamplesSliderMouseDragged - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Volume number of samples slider when mouse Dragged.
m_kVolumeSamplesSliderMouseReleased - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Volume number of samples slider when mouse released.
m_kVolumeScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kVolumeScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kVolumeScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kVolumeScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_kVolumeScaleInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kVolumeScaleInv - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kVolumeSculptor - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Sculptor object enables, draws and sculpts the volume based on the outline region drawn on screen.
m_kVolumeShaderEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: VolumeShaderEffect applied to proxy-geometry:
m_kVolumeTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Texture object for data:
m_kVolumeTexture - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Keep track of the texture instance.
m_kVolumeTextureNew - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kVolumeTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kVolumeViewer - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Render base.
m_kVolumeViewer - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Parent user-interface frame.
m_kVolumeViewer - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Render base.
m_kVolumeViewMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
m_kVolumeVOI - Variable in class gov.nih.mipav.model.structures.VOIBase: Data structure for drawing this contour in the GPU VolumeRenderer
m_kVolViewType - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Type of ViewJFrameVolumeView object (using WildMagic or not)
m_kVoxelStepsize - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
m_kVPixelLighting - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kVRImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Output VR (Volume Radio) Image:
m_kVVertexLighting - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
m_kWakeupCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Conditions which contain the events we want to "wakeup" on.
m_kWDir - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
m_kWidget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The top-level node containing the widget graphic data structures (triangle meshes and transformations)
m_kWidgetEfect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The shader effect used to render the inside color transfer function of the widget, based on the position of the widget and the position of the middle (green) sphere control-point.
m_kWidgetMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: The TriMesh representing the shape of the widget.
m_kWidgetState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Shader effect state, for reading from disk:
m_kWidgetState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Current state of the widget encapsulated in the GLSL parameters needed for the Volume renderer GLSL program:
m_kWidgetType - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Defines the current selected widget type.
m_kWinLevel - Variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender
m_kWinLevel - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Window-level interface.
m_kWinLevel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Window-level interface.
m_kWinLevel - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: window / level mouse control:.
m_kWireframe - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Wire-frame for this object.
m_kWOrig - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Ray in world coordinates.
m_kWVPMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: World-view-project matrix for applying the sculpt to the volume.
m_kXArrow - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: x-axis arrow
m_kXArrow - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: x-axis arrow
m_kXRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Basic rotations for fixed input use:
m_kYArrow - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: y-axis arrow
m_kYArrow - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: y-axis arrow
m_kYRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Basic rotations for fixed input use:
m_kZBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_kZBufferTransparency - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Zbuffer for this object.
m_kZeroVector - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Set the zero vector.
m_kZeroVector - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: DOCUMENT ME!
m_kZRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Basic rotations for fixed input use:
m_kZState - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
m_kZState - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
m_kZState - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
m_last_sot_read_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: Position of the last SOT marker read
m_last_tile_part - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: Indicate that the current tile-part is assume as the last tile part of the codestream.
m_layer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decoding_param_t: if !
m_left_edges - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_length - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
m_length - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
m_line - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_loc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
m_loc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
m_LongDesc - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: console mode long description
m_loops - Variable in class gov.nih.mipav.model.algorithms.LSCM.Boundary
m_loops - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_loops - Variable in class gov.nih.mipav.model.algorithms.LSCM.Homology
m_LUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Transfer function lookup table.
m_map_edge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_map_face - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_map_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_mark - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
m_matrice - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: fixed layer
m_max_comp_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: Maximum rate for each component.
m_mcc_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: mcc records
m_mct_coding_matrix - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the mct coding matrix
m_mct_decoding_matrix - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the mct decoding matrix
m_mct_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: mct records
m_MeanShapeBeforeTS - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: The meanshape prior to tangent space projection (calculated during alignment).
m_mEigenVec - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: eigen value matrix.
m_mEigenVectors - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.Boundary
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.Homology
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.Loop
m_mesh - Variable in class gov.nih.mipav.model.algorithms.LSCM
m_Mesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: The Delaunay Triangulization of the source or dest shape.
m_Modes - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Console mode vector
m_mQgEV - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The texture part of the combined eigenvectors.
m_mQsEV - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The shape part of the combined eigenvectors.
m_mShape2PixelWeights - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The shape-to-pixel weights.
m_mShapeInstance - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Cache shape matrix.
m_mTextureInstance - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Cache texture matrix.
m_N - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
m_N - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
m_N - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
m_Name - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: console mode name
m_nb_comps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
m_nb_max_mcc_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the max number of mct records.
m_nb_max_mct_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the max number of mct records.
m_nb_max_procedures - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_procedure_list_t: The number of the array of validation procedures.
m_nb_mcc_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the number of mct records.
m_nb_mct_records - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: the number of mct records.
m_nb_procedures - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_procedure_list_t: The number of validation procedures.
m_nb_tile_parts - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: number of tile parts for the tile.
m_nb_tile_parts_correction - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_nb_tile_parts_correction_checked - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: TNsot correction : see issue 254
m_nbands - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
m_nCandidates - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: number of candidates.
m_nCols - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
m_nConsecMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Number of conseccutive past steps whose scaled length was equal to maxstep
m_nConsecMaxStepMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: max number of conseccutive past steps whose scaled length was equal to maxstep to terminate
m_nExperiments - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: number of experiments.
m_next - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_next - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdgeTrait
m_nFDigits - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: A positive integer specifying the number of reliable digits returned by the objective function FN. fdigits is used to set the parameter n (eta) that is used in the code to specify the relative noise in f(x); the main use of eta is in calculation finite difference step size. eta is set to macheps if fdigits = -1.
m_nFuncEval - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: counter to the number of function evaluations.
m_nGradEval - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: counter to the number of gradient evaluations.
m_nIterations - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: The number of iterations.
m_nIterations - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: counter to the number of iterations.
m_nIterations1stPass - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: number of iterations.
m_nIterations2ndPass - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: number of iterations.
m_nMaxFuncEval - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: limit for number of function evaluations.
m_nMaxIterations - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: A positive integer specifying the maximum number of iterations that may be performed before the algorithm is halted.
m_NMaxParam - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: max number of parameters
m_NMinParam - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: min number of parameters
m_normal - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_nParams - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: number of parameters.
m_nPixelsDiffs - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: number of pixel difference.
m_nResetIteN - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: reset every n iterations.
m_nRows - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
m_numA - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
m_numB - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
m_numG - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
m_numR - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
m_offset_array - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
m_OptRes - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: optimizatino resutls
m_output_image - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t
m_PaintMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Curent paint mode.
m_pAnalyzeImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: reference to analyze image
m_pAnalyzeSynthesize - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: AAM synthesize analysis.
m_pData - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: un-safe pointer to the first point data element.
m_pFuncEvalBase - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: pointer to the function to be minimized.
m_pImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The image where the optimization shuold be done.
m_pkMaterial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_pkPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_pkPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_pkScreenCamera - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_pkVolumeCalcTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_pkVolumeCalcTarget2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_pkVShader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
m_pMaskImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: mask image.
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
m_pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
m_pModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: the model we're building.
m_pModel - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: AAM model
m_pModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: AAM model
m_pModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The AAM model.
m_pModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: AAM model reference.
m_point - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_ppElements - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
m_pPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: The point vector from which the triangle is defined.
m_pReferenceFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: reference frame
m_pReferenceFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: AAM reference frame.
m_pReferenceMesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
m_pReferenceShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: reference shape.
m_prev - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_prev - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdgeTrait
m_private_image - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: pointer to the internal/private encoded / decoded image
m_procedure_list - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: the list of procedures to exec
m_procedures - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_procedure_list_t: The array of procedures.
m_ProgName - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: console mode programm name
m_pShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The initial shape pose.
m_pShapeBasis - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The shape basis.
m_pt - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_pt_index - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_pTextureBasis - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The texture basis.
m_pTextureTF - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The texture transfer function.
m_pV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
m_pV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
m_pV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
m_R_c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The parameter prediction matrix
m_R_t - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
m_reduce - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decoding_param_t: if !
m_root - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_row - Variable in class gov.nih.mipav.model.algorithms.LSCM.Triplet
M_RST0 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST0 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST1 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST1 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST2 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST2 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST3 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST3 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST4 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST4 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST5 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST5 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST6 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST6 - Variable in class gov.nih.mipav.model.file.libjpeg
M_RST7 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_RST7 - Variable in class gov.nih.mipav.model.file.libjpeg
m_s - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdgeTrait
m_ScanlineParts - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: scan lines.
m_scControlPointPolygonX - Static variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Defines the relative offset in control point indices to the 8 neighboring control points which form a bounding polygon.
m_scControlPointPolygonY - Static variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: DOCUMENT ME!
m_sCentredRefshape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Centered reference shape.
m_sCurrentAnalyzeId - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Current analyzer name.
m_sGroundTruth - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: ground truth shape
m_Shape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: shape
m_ShapePCA - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The shape PCA.
m_Shapes - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: The raw (unaligned) shapes.
m_sharp - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
m_skip_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_sMeanAShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Cached mean shape.
m_sMinShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The minimum fit shape.
m_sModelShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: model shape
M_SOF0 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: Marker tags in JPEG header.
M_SOF0 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF1 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF1 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF10 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF10 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF11 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF11 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF13 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF13 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF14 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF14 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF15 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF15 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF2 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF2 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF3 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF3 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF5 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF5 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF6 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF6 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF7 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF7 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOF9 - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOF9 - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOI - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOI - Variable in class gov.nih.mipav.model.file.libjpeg
M_SOS - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_SOS - Variable in class gov.nih.mipav.model.file.libjpeg
m_sot_length - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: to tell the tile part length
m_spkCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Culling: turns backface/frontface culling on/off:
m_spkEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_spkEffect2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
m_spkEyeCamera - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Screen camera for displaying the eye clip planes in screen-coordinates:
m_spkPlaneEffect - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
m_spkScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Scene-graph root node:
m_spkScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_spkScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
m_spkScreenCamera - Variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Drawing the axis arrows in screen-space.
m_spkScreenCamera - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Drawing the axis arrows in screen-space.
m_spkSphere - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
m_spkVertexColor3Shader - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Vertex-color shader effect used for the polylines and the first-pass rendering of the proxy-geometry:
m_SrcShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: source shape voi
m_start_tile_x - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: Only tiles index in the correct range will be decoded.
m_start_tile_y - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
m_state - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: locate in which part of the codestream the decoder is (main header, tile header, end)
m_string - Variable in class gov.nih.mipav.model.algorithms.LSCM.Edge
m_string - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
m_string - Variable in class gov.nih.mipav.model.algorithms.LSCM.Face
m_string - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_string - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_szASFVer - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Current ASF version number.
m_szHostImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Optional 'host image' filename including full path.
m_szPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Path to the .asf files (if any).
m_tcd - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: the current tile coder/decoder
M_TEM - Static variable in class gov.nih.mipav.model.file.FileDicomJPEG: DOCUMENT ME!
M_TEM - Variable in class gov.nih.mipav.model.file.libjpeg
m_TexturePCA - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The texture PCA.
m_tile_ind_to_dec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t: Index of the tile to decode (used in get_tile)
m_tokens - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_touched - Variable in class gov.nih.mipav.model.algorithms.LSCM.FaceTrait
m_touched - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexTrait
m_tp_flag - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: Flag determining tile part generation
m_tp_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: Enabling Tile part generation
m_tp_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t: Position of tile part flag in progression order
m_trait - Variable in class gov.nih.mipav.model.algorithms.LSCM.Edge
m_trait - Variable in class gov.nih.mipav.model.algorithms.LSCM.Face
m_trait - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_trait - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_TransformID - Variable in class gov.nih.mipav.model.structures.TransMatrix: Transform ID associated with the matrix.
m_TransformID - Variable in class gov.nih.mipav.model.structures.TransMatrixd: Transform ID associated with the matrix.
m_Usage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: console mode usage
m_uv - Variable in class gov.nih.mipav.model.algorithms.LSCM.Vertex
m_uv - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexTrait
m_v - Variable in class gov.nih.mipav.model.algorithms.LSCM.Point
m_v - Variable in class gov.nih.mipav.model.algorithms.LSCM.Point2
m_v1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Index to point 1.
m_v2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Index to point 2.
m_v3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Index to point 3.
m_vACF - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: AAM configuration vector.
m_valence - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexTrait
m_validation_list - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t: the list of validation procedures to follow to make sure the code is valid
m_value - Variable in class gov.nih.mipav.model.algorithms.LSCM.Parser
m_value - Variable in class gov.nih.mipav.model.algorithms.LSCM.Token
m_value - Variable in class gov.nih.mipav.model.algorithms.LSCM.Triplet
m_vC - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: model parameters vector.
m_vDataMean - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
m_vDestPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: The points of the destination shape.
m_vDiff - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The difference vector.
m_vEigenVal - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: eigen value vector.
m_vEigenValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
m_vEigenValuesOrg - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
m_verbose - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Verbose mode
m_verbose - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Verbose mode
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
m_vertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
m_vertex_traits - Variable in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
m_vertices - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeKey
m_vertices - Variable in class gov.nih.mipav.model.algorithms.LSCM.Graph
m_vertices - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
m_vFuncVal - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
m_vImagePyr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Image VOIs vector.
m_vInitEntries - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: initial entry vector.
m_vMeanTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The mean texture.
m_vMeanTextureOrg - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: the mean texture original.
m_vMethodPar - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: special parameters used by each optimization method e.g. step size used for calc. nummerical gradient
m_vMinC - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: The minimum fit model parameters.
m_vModelParameterSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Model parameters changes steps.
m_vModels - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Model vector.
m_vModels - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: model vector.
m_vNFuncEval - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
m_vOverlap - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: vector to hold the overlap region.
m_vPointAux - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Auxillary point data.
m_vPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: A vector of points.
m_vPoseParameterUpdateConstraints - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: pose parameters update.
m_vPtCrv - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: vector to average point to curve landmark error.
m_vPtCrvDists - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: curve landmark vector
m_vPtPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: vector to hold the average point to point landmark error.
m_vRotationSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: model rotation steps.
m_vScaleSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: model scale steps.
m_vSegResults - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: vector of segmentation results
m_vShapeParameterConstraintsMean - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: shape parameters upate.
m_vShapeParameterConstraintsSD - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
m_vTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: The texture samples.
m_vTextureErrorSeparate - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: vector to hold the texture error separable.
m_vTextureVar - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The variance of each normalized pixel in the texture model.
m_vTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: A vector of triangles.
m_vUser1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: User-defined field 1.
m_vUser2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: User-defined field 2.
m_vUser3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: User-defined field 3.
m_vvData - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
m_vvFuncParm - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
m_WarpTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: warp table
m_weight - Variable in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
m011 - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
m020 - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
m0ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
m0ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
m0ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
m0ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
m0ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
m101 - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
m110 - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
M2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
M2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
m200 - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
m2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
m3Button - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
mA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
ma2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
MAC_1_BIT - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_16_BIT_COLOR - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_16_COLORS - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_16_GREYS - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_24_BIT_COLOR - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_256_COLORS - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_256_GREYS - Static variable in class gov.nih.mipav.model.file.FileLIFF
MAC_4_GREYS - Static variable in class gov.nih.mipav.model.file.FileLIFF
macAppVMOptions - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
MACHEP - Static variable in class gov.nih.mipav.model.algorithms.Cephes
MACHEP - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
MACRO_t1_flags(FileJPEG2000.opj_t1_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
mad(double[], double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
MAD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
MAD - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
mad_daub_noise_est(double[], double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
MADButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
MADSEN - Variable in class gov.nih.mipav.model.algorithms.LsqFit
MADSEN - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
mag - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
MAG_REGION - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
magButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: buttons *
magButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
magButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: refs to the magnify and minimize button
magData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
magData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
magFactor - Variable in class gov.nih.mipav.model.file.FileBioRad: magnification factor.
MAGIC_NUMBER - Static variable in class gov.nih.mipav.model.file.FileSVS
MAGIC_NUMBER - Static variable in class gov.nih.mipav.model.file.FileTiff
magicNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 0x494d4746 or "IMGF" or 1229801286.
MagicSquare(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
magImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
magImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
magImage() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: magnifies image
magImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: magnifies image
magLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
magLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
magMax - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
magMax - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
magMin - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
magMin - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
MAGNETIC_RESONANCE - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality MR.
MAGNETIC_RESONANCE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality MR.
MAGNETIC_RESONANCE_ANGIOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality MR angiography.
MAGNETIC_RESONANCE_ANGIOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality MR angiography.
MAGNETIC_RESONANCE_SPECTROSCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality MR SPECT.
MAGNETIC_RESONANCE_SPECTROSCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality MR SPECT.
magneticFieldStrength - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
MagneticFieldStrength - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
MAGNETOM_VISION - Static variable in class gov.nih.mipav.model.file.FileUtility: Siemens MAGNETOM VISION. extension: .ima
MAGNETOM_VISION_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type MAGNETOM_VISION
magnif - Variable in class gov.nih.mipav.model.algorithms.SIFT
magnif - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < norm threshold.
magnif - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
magnification - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
magnification - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective
magnification - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
magnification - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: magnification of images in the light-box (mag is a percentage).
magnification - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Magnification of images in the light-box (mag is a percentage).
MAGNIFICATION - gov.nih.mipav.view.ViewJSlider.SliderType
MAGNIFICATION - Static variable in class gov.nih.mipav.view.ViewJSlider
magnifyCursor - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
magnitude() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Calculates magnitude from real and imaginary parts magnitude = ( (realData)^2 + (imagData)^2 )^(1/2);
magnitude() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Calculates magnitude from real and imaginary parts magnitude = ( (realData)^2 + (imagData)^2 )^(1/2);
magnitude(double) - Static method in class gov.nih.mipav.util.DoubleDouble: Determines the decimal magnitude of a number.
magnitude(float[], int, float[], float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
magnitude(float, float) - Static method in class gov.nih.mipav.util.MipavMath: Calculates magnitude from real and imaginary parts magnitude = ( (real)^2 + (imaginary)^2 )^(1/2);
MAGNITUDE - gov.nih.mipav.view.Preferences.ComplexDisplay: Displays the magnitude of complex images
magnitudeCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
magnitudeRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
magnitudeRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
magniWindow - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
MAGR_HEIGHT - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Default size of magnifier window = 120 pixels.
MAGR_MAG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Magnification value of magnifier window -- default = 4.0.
MAGR_WIDTH - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: default = 120 pixels.
magRegionCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Custom cursor: magnify region.
magRegionCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: Custom cursor: magnify region.
magSettings - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Dialog used to control the magnification of the image.
magSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
magSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
magSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Slider used for zooming.
magSliderDictionary - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
magSliderPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
magStrength - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 80 Magnet strength (in gauss).
magWgtFlag - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 730 Magnitude Weighting Flag.
mahalanobis - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
Mahalanobis() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Returns the Mahalanobis Distance of the model parameters.
MAHALANOBIS_SQUARED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
MAHALANOBIS_SQUARED - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
MahalanobisButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
MahalanobisDistance(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the Mahalanobis distance of a set of PCA parameters.
MahalanobisSquared() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
main - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
main() - Method in class gov.nih.mipav.model.algorithms.NL2sol
main(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Iridescence.main creates the Iridescence object and window frame to contain the GLCanvas.
main(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, VolumeClipEffect, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop
main(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, VolumeClipEffect, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
main(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, VolumeImage, int, VolumeSlices, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
main(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, Vector<VolumeObject>, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask
main(GLCanvas, VolumeTriPlanarInterface, VolumeImage, VolumeImage, Vector3f, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
main(VolumeTriPlanarInterface, VolumeImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
main(String[]) - Static method in class gov.nih.mipav.model.algorithms.OpenCLInfo
main(String[]) - Static method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile
main(String[]) - Static method in class gov.nih.mipav.view.FileSelectorImpl
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.aamc
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Test
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePatternTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPatternTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetectionTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePatternTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontalTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVerticalTest
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
main(String[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Test
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: C style anchor for console mode invocation
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: C style anchor to invoke the B console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeCM: C style anchor to invoke the CM console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeD: Debug function.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: C style anchor to invoke the E console mode, evaluation mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeLOO: C style anchor to invoke the loo console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeM: C style anchor to invoke the M console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeP: C style anchor to invoke the P console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeR: C style anchor to invoke the R console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeREG: C style anchor to invoke the REG console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeS: C style anchor to invoke the s console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeSM: C style anchor to invoke the SM console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeT
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeU: C style anchor to invoke the U console mode.
Main(int, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeW: C style anchor to invoke the W console mode.
main_head_end - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: main header end position (first SOT position)
main_head_start - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: main header start position (SOC position)
main_routine_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
mainBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: The main panel that is accessed.
mainBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: The main panel that is accessed.
mainDialogPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: The main panel of the dialog.
MainDividerLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
mainEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
mainEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
mainFields - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
mainFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: The main menu bar that runs MIPAV.
MainFrame() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
mainLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
mainLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
mainLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
mainLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
mainLabel3 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
mainLabel4 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
mainLabel5 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
mainlb(int, int, double[], double[], double[], int[], double[], double[], double, double, double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], int[], int[], String[], int, String[], boolean[], int[], double[], RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
mainPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
mainPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: main panel of dialog
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: main panel *
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: dialog elements.
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: dialog elements.
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: panels
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: main panel containing interface:
mainPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: panels
mainPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mainPanel - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
mainPanel - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: The main control.
mainPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Control panel for volume sculpting.
mainPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: the main control panel.
mainPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: The main control panel.
mainPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: The main control panel.
mainPanel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The main GUI control panel.
mainPanel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

The main GUI control panel.
mainPanel - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: The main control.
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: The main control.
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: main panel *
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: main panel
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: main panel *
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: main panel *
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: main panel
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: The main control.
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
mainPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
mainPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
mainPixelShader1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: First part of the GLSL code for the pixel shader program for all widgets:
mainPixelShader2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL main code part 2 for all widget types.
mainPixelShaderCircle - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL function call for the circle widget:
mainPixelShaderSquare - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL function call for the square widget:
mainPixelShaderTriangle - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: GLSL function call for the triangle widget:
mainRenderBuffer - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
mainSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
mainSetup - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
mainSort() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
MajorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
majorAxisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
majority_filter(boolean[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
make - Variable in class gov.nih.mipav.model.file.FileSVS
make - Variable in class gov.nih.mipav.model.file.FileTiff
make(float) - Method in class gov.nih.mipav.model.algorithms.GaussianOneDimKernel: DOCUMENT ME!
MAKE - Static variable in class gov.nih.mipav.model.file.FileSVS
MAKE - Static variable in class gov.nih.mipav.model.file.FileTiff
make_affine_matrix(SIFT3D.Mat_rm, int, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
make_chain(double[][], int, int, boolean) - Method in class gov.nih.mipav.model.structures.VOIContour
make_funny_pointers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
make_gss(SIFT3D.GSS_filters, SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
make_kernel_pyramid(Vector<double[][][]>, Vector<double[][][][]>, Vector<double[]>, double[], double[], double[], double[], double, int, boolean, double[][][], boolean, double[][]) - Method in class gov.nih.mipav.model.algorithms.BlindDeblur
make_odither_array(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg
make_set(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
make2UnitsOfMeasureIdentical(int, int) - Method in class gov.nih.mipav.model.structures.ModelImage
make3DVOI(boolean, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Creates a 3D Surface out of the VOIs.
make3DVOI(boolean, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
make3DVOI(boolean, ModelImage, ModelImage, BitSet, VOIManager, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
makeActiveColorBorderSizeOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeActiveColorOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: makes the active-colour option line in the globalChangesPanel, to allow user to select the colour used to denote the active image.
makeAdjustableVOI(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Constructs reference point VOI from the refPoint passed in.
makeAlgorithmsMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the algorithms menu.
makeApplyClosePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: makes the Apply/Close button panel, with the Apply button on the left and the Close button on the right.
makeAppropriateInputPanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: allows editing of the input value as allowed by kind of VR or keyword.
makeAppropriateInputPanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: allows editing of the input value as allowed by kind of VR or keyword.
makeAppropriateInputPanel(String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: Selects the panel for a given inputted edType, filling it the given string.
MakeArrayData() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MakeArrayObj(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MakeArrow() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
makeBlueTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a blue scale LUT.
makeBoneTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a bone scale LUT.
MakeBorderShape(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts a one path shape into a border shape by adding two symmetric borders: an inside (a hole) and an outside border.
makeButterworthFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform: DOCUMENT ME!
makeButterworthFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform: DOCUMENT ME!
makeButterworthFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2: DOCUMENT ME!
makeButterworthFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
makeButterworthFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
makeCaptureMenu(boolean) - Method in class gov.nih.mipav.view.ViewMenuBar: Create the image capture/print File submenu.
makeChebyshevTypeIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
makeChebyshevTypeIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeChebyshevTypeIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
makeChebyshevTypeIFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
makeChebyshevTypeIFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
makeChebyshevTypeIIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
makeChebyshevTypeIIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeChebyshevTypeIIFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
makeChebyshevTypeIIFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
makeChebyshevTypeIIFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
makeCheckboxLabels() - Method in class gov.nih.mipav.view.JPanelAnonymizeImage: Creates the list of labels to use in the checkboxes.
makeCheckboxLabels() - Method in class gov.nih.mipav.view.JPanelChecklist: Creates the list of labels to use in the checkboxes.
makeCheckboxLabels() - Method in class gov.nih.mipav.view.JPanelStatisticsList: Creates the list of labels to use in the checkboxes.
makeCheckBoxList() - Method in class gov.nih.mipav.view.JPanelChecklist: Builds all checkboxes; prepare for this step by having an array of Strings with the names to use.
makeCheckContainer() - Method in class gov.nih.mipav.view.JPanelChecklist: Builds the display of the container which holds the display of checkboxes.
makeCheckerboard() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Sets the number of checkers in a row and a column.
makeCheckOnCloseFrameOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Check on frame close" option line in the globalChangesPanel If checked the user is required to reply to a dialog to close the frame.
makeCheckUncheckPanel() - Method in class gov.nih.mipav.view.JPanelChecklist: Builds the panel with the "check all"/"uncheck all" buttons.
makeCircularKernel(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Generates a circular kernel of a specific diameter.
makeCircularKernel(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Generates a cicular kernel of a specific diameter.
makeCircularKernel(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Generates a cicular kernel of a specific diameter.
makeCircularKernel(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Generates a cicular kernel of a specific diameter.
makeClockwise() - Method in class gov.nih.mipav.model.structures.VOIContour: Make contour clockwise.
makeColorString(Color) - Static method in class gov.nih.mipav.view.MipavUtil: Takes a java.awt.Color and forms a string representing its color. the string appears as 6 hex digits and looks like the color coding used in html files, as in: "RRGGBB".
makeColorString(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Takes a java.awt.Color and forms a string representing its color. the string appears as 6 hex digits and looks like the color coding used in html files, as in: "RRGGBB".
makeComplexData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: makeComplexData -
makeComplexImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the options for displaying complex image information
makeCoolHotTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a "Cool hot" scale LUT.
makeCounterClockwise() - Method in class gov.nih.mipav.model.structures.VOIContour: Checks to see if Contour is counter-clockwise.
makeCounterClockwise(int) - Method in class gov.nih.mipav.model.structures.VOIContour: Checks to see if Contour is counter-clockwise.
makeCrosshairOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the options for crosshair display.
makect(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeCTThighTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Makes a LUT specifically for viewing CT thigh images
makeCustomizedLUT(String) - Method in class gov.nih.mipav.model.structures.ModelLUT: makeVR with customized LUT
makeCustomMenu(String, Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewMenuBar: Creates a custom menu with a given Vector of UIParams
makeCutL(AlgorithmMeanShiftClustering.fams_cut[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
makeCuts(AlgorithmMeanShiftClustering.fams_cut[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
makeDataEven(byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Make the length of the data buffer even by adding a space or null.
makeDebugOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: makes the debug option line in the globalChangesPanel.
makeDebugOptionsHelper(JPanel, String, JComboBox, Preferences.LogLevel) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeDefaultLoadImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the options for displaying how images should be displayed on default.
makeDicomMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Create the Dicom File submenu.
makeDicomNodeTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
makeDicomReceiverOnStartOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeDiffusionTensorMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Create the Diffusion Tensor File submenu.
makeDimensionNodeTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
makeDirectory(File, JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: makes the submitted directory as given by the inputted File, or the text as given in the given given textField.
makeEllipse(Vector3f, Vector3f, Vector3f, float, float, VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates the 3D 1-voxel thick ellipsoids used in the intial worm model.
makeEllipse2DA(Vector3f, Vector3f, Vector3f, float, VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
makeEllipse2DA(Vector3f, Vector3f, Vector3f, float, Vector3f, float, VOIContour, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
makeEllipticFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
makeEllipticFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeEllipticFilter(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
makeEllipticFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
makeEllipticFilter(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
makeEssentialImageInfoTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
makeEven(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Makes length even.
makeExtentDivisibleByDenom(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Calculate the nearest extent value divisible by 2, 4 or 8
makeExtentsString() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Makes a single string out of the extents.
MakeFace(int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MakeFace(int, int, int, int, Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
makeFileFilterOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the file filter option line in the globalChangesPanel.
makeFileMenu(boolean) - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the file menu.
makeFileTemporaryDirectory(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the temporary file directory fields in fileMiscPanel.
makeFirstDerivative(float) - Method in class gov.nih.mipav.model.algorithms.GaussianOneDimKernel: DOCUMENT ME!
makeFlipNIFTIReadOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Flip Y axis on NIFTI read of IS and PA" option line in the globalChangesPanel.
makeFloatingPointOnly(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Takes a text field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeFloatString(float, int) - Static method in class gov.nih.mipav.view.MipavUtil: Makes a string of a float with a specific number of decimal points.
makeFontOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
makeFrameRateOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes options for default frame rate for saving AVIs.
makeGaborFilter(float, float, float, float, float, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
makeGaborFilter(float, float, float, float, float, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
makeGaussianFilter(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
makeGaussianFilter(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
makeGaussianFilter(double[], double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
makeGaussianFilter(double[], double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeGaussianFilter(double[], double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
makeGpuCompEnabledOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeGrayBRTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a gray scale LUT.
makeGrayTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a gray scale LUT.
makeGrayTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelRGB: Creates the R, G, and B transfer functions to produce a gray scale LUT.
makeGreenTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a green scale LUT.
makeGxKernels1D() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
makeGxxKernels1D() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox: Creates Gaussian derivative kernels.
makeHeapMaxCheckOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "VM Heap Max/Preferences memory check" option line in the globalChangesPanel If checked, the initial heap size and maximum heap size in the VM startup file is checked against what is in the preferences for this option.
makeHelpMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the help menu.
makeHistogramImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes checkbox for whether to update image in real-time as histogram luts are changed
makeHomomorphicFilter(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
makeHomomorphicFilter(double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
makeHorizonTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelRGB: Creates the R, G, and B transfer functions to produce a horizontal linear scale LUT.
makeHotMetalTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a spectrum scale LUT.
makeHTMLFontString(Color, String, int, int, boolean, String) - Static method in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
makeHyperComplexData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: makeHyperComplexData -
makeImage() - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Converts gaussian double buffer to image model object.
makeImage() - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Converts gaussian float buffer to image model object.
makeImage() - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Creates new image with given data type.
makeImage(float[][][][], String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE: Creates and returns a ModelImage with the tensor data.
makeImageMenu(boolean) - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the image menu.
makeImageName(String, String) - Static method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Helper method for making the result image's name.
makeImageName(String, String) - Static method in class gov.nih.mipav.model.structures.ModelImage: Helper method for making the result image's name.
makeImageName(String, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Helper method for making the result image's name.
makeImageNodeTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
makeImagePanel(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
makeIndexedLUT(int[]) - Method in class gov.nih.mipav.model.structures.ModelLUT: Special LUT to be used to display java image.
makeIndexedRGB() - Method in class gov.nih.mipav.model.structures.ModelRGB: Special RGB table to be used to display java image.
makeInformationNodeTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
makeInfoStruct(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM
makeIntensityLabelColorOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the drop down list for color options for the intensity label text color
makeInterpolateImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes checkbox for whether to display the image with interpolation on user's screen
makeipt(int, int[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makeKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Makes the kernel.
makeKernel() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Forms kernel.
makeKernel() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Forms kernel.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Generates a kernel of the indicated type.
makeKernel(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Generates a kernel of the indicated type.
makeKernelData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: sets the kernel variables.
makeKernelData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: sets the kernel variables.
makeKernelMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Forms kernel.
makeKernelMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Makes the kernel mask.
makeKernelMask() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Makes the kernel mask.
makeKernels1D(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: DOCUMENT ME!
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Makes derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Makes 2D derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch: Makes derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: makeKernals2D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Makes 2D derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Makes 2D derivative kernels to be used in the calculation of the hessian.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: makeKernals2D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: makeKernals2D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Makes derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Creates 2D Gaussian kernels for the blurring process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Creates 2D Gaussian kernels for the blurring process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: makeKernals2D - creates the derivative kernels used to calculate the gradient magnitude.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Creates 2D Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: creates Gaussian kernels for the blurring process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Creates 2D Gaussian kernels for the blurring process.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Creates Gaussian derivative kernels.
makeKernels2D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Creates Gaussian derivative kernels.
makeKernels2D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Makes 3D derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Makes 3D derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: makeKernals3D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Makes 3D derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Makes 3D derivative kernels to be used in the calculation of the hessian.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: makeKernals3D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: makeKernals3D - creates the derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Makes derivative kernels to be used in the calculation of the gradient magnitude.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates the 3D derivative kernels used to calculate the gradient magnitude and kernel for the diffusion process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Creates 3D Gaussian kernels for the blurring process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Creates 3D Gaussian kernels for the blurring process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: makeKernals3D - creates the derivative kernels used to calculate the gradient magnitude.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Creates 3D Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: creates Gaussian kernels for the blurring process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Creates 3D Gaussian kernels for the blurring process.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Creates Gaussian derivative kernels.
makeKernels3D() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Creates Gaussian derivative kernels.
makeKernels3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Creates Gaussian derivative kernels.
makeLatticeContours() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
makeLFOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes option for look and feel
makeLoadBMenu(boolean) - Method in class gov.nih.mipav.view.ViewMenuBar: Create the Load image B File submenu.
makeLoggingOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the Logging option line with checkbox/button in the globalChangesPanel.
makeLogMagImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes checkbox for whether to display the log of image magnitude on user's screen
makeLUT(int) - Method in class gov.nih.mipav.model.structures.ModelLUT: This method uses the A, R, G, B transfer functions to build the desired LUT.
makeLUT(ModelLUT, int) - Method in class gov.nih.mipav.view.JPanelHistogram: Updates the number of colors in the LUT and updates the displays.
makeLUT(ModelLUT, int, boolean) - Method in class gov.nih.mipav.view.JPanelHistogram: Updates the number of colors in the LUT and updates the displays.
makeLUTImageOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes checkbox for whether to display image using lut that is modality or image specific.
makeLUTMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the LUT menu.
makeMaps() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
makeMaps() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
makeMaxDebugLineOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes options for max number of lines in debug panel
makeMenu(Object, boolean, JComponent[]) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Makes a menu out of the menu components, using parentMenu as the base for this menu.
makeMenu(Object, char, boolean, Vector<JComponent>) - Method in class gov.nih.mipav.view.ViewMenuBuilder
makeMenu(Object, char, boolean, JComponent[]) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Makes a menu out of the menu components, using parentMenu as the base for this menu and adding a mnemonic.
MakeMesh(CAAMShape, CAAMMesh, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDelaunay: Generates a triangular mesh, where all triangles satisfies the Delaunay property.
makemmVector3f(Vector3f, float[]) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
makemmVector3f(Vector3f, float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Makes a mm (physical space) point from a pixel space point.
makeMouseClickOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes options for how user interface will react when the left or right mouse buttons are clicked.
makeMove(String) - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface: Passes move command from the JPanelFlythruMove to the FlyPathBehavior class.
makeMove(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
makeMove(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
makeMove(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
makeMovie() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Method actually does the transcoding from JPeg images file to AVI.
makeMultiThreadingEnabledOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeNeuriteList(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
makeNumericsOnly(boolean) - Method in class gov.nih.mipav.view.JPanelEditDefault: permit only numbers, backspace and delete-key entries in the panel.
makeNumericsOnly(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Takes a text field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeNumericsOnly(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Takes a text field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeNumericsOnly(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: takes a txt field, and forces the textfield to accept numbers, backspace, period and delete-key entries.
makeNumericsOnly(JTextField) - Method in class gov.nih.mipav.view.ViewJFrameMemory: Takes a txt field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeNumericsOnly(JTextField) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Takes a txt field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeNumericsOnly(JTextField, boolean) - Static method in class gov.nih.mipav.view.MipavUtil: Takes a text field and forces the text field to accept numbers, backspace and delete-key entries.
makeNumericsOnly(JTextField, boolean, boolean) - Static method in class gov.nih.mipav.view.MipavUtil: Takes a txt field, and forces the textfield to accept numbers, backspace and delete-key entries.
makeOutputWindowOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the checkbox where the user can decide whether the output window should appear on startup.
makePaintBitmapBorder(int[], BitSet, int, ViewJFrameBase) - Method in class gov.nih.mipav.view.ViewJComponentBase: This method adds an opaque border to the painted area on-screen.
makePaintImage(int[], BitSet, int, ViewJFrameBase, boolean) - Method in class gov.nih.mipav.view.ViewJComponentBase: This method creates a buffer that will be used to make an image of the painted area on-screen.
makePaintImage(int[], BitSet, int, ViewJFrameBase, boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: This method creates a buffer that will be used to make an image of the painted area on-screen.
MakePolynomialForBoundaryConstrainedProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
makeppftfilter(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
makePreview(String, String) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Makes an image preview of the image currentPath/selectedFilename and draws it in the image preview area.
makeProgress(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
makeProtractor() - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Constructs and initializes one of the 3 protractors, depending on which component this is.
makeProvenanceOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the Data provenance option line in the globalChangesPanel.
makeQuickListOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the quicklist option line in the otherPanel.
makeRangeSymmetric() - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
makeRedTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a red scale LUT.
makeReferenceVOI(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Constructs reference point VOI from the refPoint passed in.
makeregionsdistinct(int[][], int) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
makeResolutionString() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Makes a single string out of the resolutions.
makeRGB(int) - Method in class gov.nih.mipav.model.structures.ModelRGB: This method uses the R, G, B transfer functions to build the desired RGB tables.
makerNote - Variable in class gov.nih.mipav.model.file.FileSVS
makerNote - Variable in class gov.nih.mipav.model.file.FileTiff
MAKERNOTE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory: Version number used for identifying makernotes from Reconyx UltraFire cameras.
MAKERNOTE_PUBLIC_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory: Version number used for identifying the public portion of makernotes from Reconyx UltraFire cameras.
MAKERNOTE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory: Version number used for identifying makernotes from Reconyx HyperFire cameras.
makeRotationMatrix(int[], double[]) - Static method in class gov.nih.mipav.model.file.FilePARREC: Makes rotation matrix based on image angulations that were stored in header and converted to orientation-specific values.
makeSaveAllOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Save All on Save" option line in the otherPanel.
makeSaveDefaultsOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: makes the "Save dialog defaults" option line in the otherPanel.
makeSaveHdrImgOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Always save .hdr/.img files from dialog/ in Analyze format/ in Interfile format/ in Nifti format" combo box in the otherPanel.
makeSaveMncOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Always save .mnc files from dialog/ in Minc-1.0 CDF format/ in Minc-2.0 HDF5 format" combo box in the otherPanel.
makeSaveOverwriteOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the option to prompt on overwrite for saving.
makeSaveXMLThumbnailOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the "Save Thumbnail for XML Files" option line in the globalChangesPanel.
makeScriptingMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Create the Scripting menu.
makeSecondDerivative(float) - Method in class gov.nih.mipav.model.algorithms.GaussianOneDimKernel: DOCUMENT ME!
makeSelectionFrame(Vector3f, Vector3f, Vector3f, float, VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates the VOI that highlights which point (lattice or annotation) is currently selected by the user.
makeSelectionFrame(Vector3f, Vector3f, Vector3f, float, VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation: Generates the VOI that highlights which point (lattice or annotation) is currently selected by the user.
makeSeparator() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: makes a separator for the use in the toolbars.
makeSeparator() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Makes a separator for the use in the toolbars.
makeSeparator() - Static method in class gov.nih.mipav.view.ViewToolBarBuilder: Makes a separator for the use in the toolbars - a button with the proper icon.
makeShapeFromArray(float[], Vector<Vector<Integer>>, Vector<Vector<Integer>>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
makeSig(String, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
makeSkinTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a skin scale LUT.
makeSpectrumTransferFunctions() - Method in class gov.nih.mipav.model.structures.ModelLUT: Creates the R, G, and B transfer functions to produce a spectrum scale LUT.
makeSphericalKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Generates a spherical kernel of a specific diameter.
makeSphericalKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Generates a spherical kernel of a specific diameter.
makeSplashOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: makes the splash-screen option line in the otherPanel.
makeStatisticListDescriptions() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Creates the list of labels to use in the checkboxes.
makeString(float, int) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Makes a string of a floating point number with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Makes a string of a float with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Makes a string of a floating point number with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Makes a string of a floating point number with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Makes a string of a float with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.ViewJComponentGraphAxes: Makes a string of a float with a specific number of decimal points.
makeString(float, int) - Method in class gov.nih.mipav.view.ViewJFrameBase: Makes a string of a float with a specific number of decimal points.
makeString(String[]) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Makes the .preferences string out of the array.
makeStripedLUT() - Method in class gov.nih.mipav.model.structures.ModelLUT: makeStripedLUT -
makeSystemsAnalysisMenu() - Method in class gov.nih.mipav.view.ViewMenuBar
makeTensorImage(float[][][][], float[][][][], String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE: Creates and returns a ModelImage with the tensor data.
makeTitle() - Method in class gov.nih.mipav.view.ViewJFrameImage: Constructs the title of the frame with the image name and the slice location.
makeToolbarSeparator() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Makes a separator for the use in the toolbars - a button with the proper icon.
makeToolbarsMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the toolbar menu.
makeTranslationMatrix(double[]) - Static method in class gov.nih.mipav.model.file.FilePARREC: Makes rotation matrix based on image off-centres that were stored in header and converted to orientation-specific values.
makeUbyteHistoOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeUniqueKey(String) - Method in class gov.nih.mipav.model.structures.CustomHashtable: Returns a unique key string for the hashtable based on a given key string.
makeUnitsOfMeasureIdentical() - Method in class gov.nih.mipav.model.structures.ModelImage: Make all spatial units the same, all time units the same, and all frequency units the same
makeUnitString() - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Makes a single string out of the units of measure.
makeUpBlack - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
makeUpBlack - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
makeUpWhite - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
makeUpWhite - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
makeUtilitiesMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the utilities menu.
makeVector(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
makevertex(delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
makeVOIColorOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
makeVOIContinuousOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the options for displaying the angle for active line VOIs.
makeVOIDrawColorOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
makeVOILineAngleOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Makes the options for displaying the angle for active line VOIs.
makeVOIMenu() - Method in class gov.nih.mipav.view.ViewMenuBar: Construct the VOI menu.
makeVOIPointDrawTypeOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Sets the graphic type for VOI points (4 types, each with a corresponding gif).
makeVOISaveLPSOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makeVoxelCoord3Df(Vector3f, float[]) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
makeVoxelCoord3Df(Vector3f, float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Makes a pixel space point from a physical space point.
makeWindowLevelOptions(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
makewt(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
makingCheckerboard - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
mAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
mallocFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: Dialog that allows changes to the amount of heap requested of the system by the java Virtual Machine for MIPAV during java start.
MAMMOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality mammography.
MAMMOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality mammography.
managedPanel - Variable in class gov.nih.mipav.view.components.PanelManager: DOCUMENT ME!
manifest - Variable in class gov.nih.mipav.plugins.ManifestFile
MANIFEST_LOC - Static variable in class gov.nih.mipav.plugins.ManifestFile
ManifestFile - Class in gov.nih.mipav.plugins: Stores the default manifest file as a static reference, or optionally can be used for creating custom manifest files.
ManifestFile() - Constructor for class gov.nih.mipav.plugins.ManifestFile: Gets/creates manifest file in default location.
ManifestFile(String) - Constructor for class gov.nih.mipav.plugins.ManifestFile
manifestInfo - Variable in class gov.nih.mipav.plugins.ManifestFile: The manifest file as a set of class files.
mant - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_stepsize_t: mantissa
MANUAL_WAKEUP - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Set this flag if you want to manually wakeup the behavior.
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector: attributes.
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter.FilterType
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: Attributes.
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Microscope: Attributes.
manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective
Manufacturer - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
manufacturerModelName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
manySpectrums - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
map - Variable in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
map - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
map - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Used to calculate the levelset contour.
Map(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity
Map(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Maps an input vector using the current lookup table.
Map(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Does nothing.
Map(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction
MAP - Static variable in class gov.nih.mipav.model.file.FileUtility: Benes Trus special file type. extension: .map
mapC - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
mapchannel - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
mapchannel - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
mapIntermediateToFinal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Map the intermediate images to the final color image.
mapIntermediateToFinal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Map the intermediate images to the final color image.
mapIntermediateToFinal() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Map the intermediate images to the final color image.
mapR - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
mapS - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
MapTextures() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs a mapping of all textures in 'm_vTexture'.
mapValue(float) - Method in class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: Return an ARGB value stored as an integer which represents the color corresponding to the input value.
mapValue(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: Return an ARGB value stored as an integer which represents the color corresponding to the input value.
mapValue(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Map input RGB values to an intensity value.
MapValuesToContiguousRange(int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
MapValuesToContiguousRangeContiguousEntries() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
MapValuesToContiguousRangeNonContiguousEntries() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
MapValuesToContiguousRangeNonContiguousRepeatingEntries() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
MARCHING_SQUARES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Perform zero crossing detection using the marching squares method.
MARCHING_SQUARES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Perform zero crossing detection using the marching squares method.
MARCHING_SQUARES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Perform zero crossing detection using the marching squares method.
MarchingCubes - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes
MarchingCubes() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
marchingCubes3D(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
MarchingSquares - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes
MarchingSquares() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
mArea - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Total area of triangle meshes.
marginColor - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
margins - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
marginT - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: marginT indicating the number of slices to be padded in time at the start and end of T dimension
marginX - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: marginX indicating the number of pixels to be padded on left and the right of X dimension
marginX - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
marginY - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: marginY indicating the number of pixels to be padded on top and the bottom of Y dimension
marginY - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
marginZ - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: marginZ indicating the number of slices to be padded in front and the back of Z dimension
marginZ - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
mark(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark
mark(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh: Set the face incremental mark of the vertex to the one of the mesh.
mark(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
mark(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh: Set the vertex incremental mark of the vertex to the one of the mesh.
mark(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark
MARK - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
MARK - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
mark_relax(int, int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
markedVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
markedVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
markedVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: VOI vector to fix the wrong segmentation contour after AAM segmentation.
marker - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
marker - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: list of markers
marker - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: list of markers
marker - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
marker - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
MARKER_ENTRY_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MARKER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MARKER_ENTRY_TRIGGER_IN - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MARKER_ENTRY_TRIGGER_OUT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MARKER_EOI - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader: Private, because one wouldn't search for it.
marker_list - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
markerCenters - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
markerLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
markerLatticeSegments - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
markerNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
markErrorOne() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Go through the auto segmented VOIs, filter out the irregular shape or wrong shapes.
markErrorOne() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Go through the auto segmented VOIs, filter out the irregular shape or wrong shapes.
markErrorOne() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Mark the error segmented VOIs.
markerSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
markerType - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
markerType - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
markFinalized() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Mark the sample as having its cost finalized, meaning that it can no longer be updated.
marknum - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: number of markers
marknum - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: number of markers
markPossibleSkeletonSamples(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Mark all inside samples that have nonuniform boundary distance gradients and then "connect" such samples by following the gradient.
markProbe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Mark the probing guide line.
markRegion(int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Start at a point in an image and grow to all connected points, marking them and counting as we go.
MARKSET_ALIGN - Static variable in class gov.nih.mipav.model.file.FileAfni: marker types.
MARKSET_BOUNDING - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
marksFlag - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
marksFlag - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
marksFlags - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
marksFlags - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
marksHelpString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
markSkeletonPoint(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: Mark the specified volume sample as being part of the skeleton and mark all the connected samples within the specified radius of the specified sample as being neighbors.
marksLabString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
markStart() - Method in class gov.nih.mipav.model.structures.DijkstraCostItem: Mark this sample as the beginning of the minimum cost path.
marksXYZ - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
markVisited(int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Mask indicating which voxels to process.
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: bitset of vois mask
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing: contains VOI.
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: contains VOI.
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: contains VOI.
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: contains VOI.
mask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor: contains VOI.
mask - Variable in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
mask - Static variable in class gov.nih.mipav.model.algorithms.StochasticForests
mask - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.model.structures.ModelImage: Mask is a binary object that is true interior to a VOI and false otherwise used in algorithms to process only on VOIs if indicated by the user.
mask - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
mask - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
MASK - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
MASK - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: DOCUMENT ME!
mask_aif - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
mask_aif_slice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
MASK_ALL - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: All light types mask
MASK_AMBIENT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Bit mask used to identify light types in combination.
MASK_BINARY - Static variable in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Indicates that a binary mask should be generated from an image's paint.
MASK_BINARY - Static variable in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Indicates that a binary mask should be generated from an image's VOI(s).
mask_data - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
MASK_DATA_TYPE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: The label to use for the mask output image data type parameter.
MASK_DATA_TYPE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: The label to use for the mask output image data type parameter.
MASK_DIRECTIONAL - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Directional light mask
MASK_METHOD - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
MASK_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
MASK_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
MASK_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Extract surface from mask image.
MASK_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Extract surface from mask image.
mask_npixel - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
MASK_POINT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Point light mask.
MASK_SHORT - Static variable in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Indicates that a short mask should be generated from an image's paint.
MASK_SHORT - Static variable in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Indicates that a short mask should be generated from an image's VOI(s).
MASK_SPOT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Spot light mask.
MASK_UBYTE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Indicates that a unsigned byte mask should be generated from an image's paint.
MASK_UBYTE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Indicates that a unsigned byte mask should be generated from an image's VOI(s).
mask11 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
mask13 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
mask2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
mask2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
mask2 - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
mask2Border(libdt.Mat, int, byte[]) - Method in class gov.nih.mipav.model.algorithms.libdt
mask3 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
mask3x3(double[], double[], int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Function to apply a 3x3 mask to an image
mask3x3(double[], double[], int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Function to apply a 3x3 mask to an image
mask5 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
mask7 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
mask9 - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
maskAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
maskAll - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
maskAll - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskAll - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
maskBU - Variable in class gov.nih.mipav.model.structures.ModelImage: Backup of mask for undoing.
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
maskBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
MaskBurnAttribute - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: MaskBurnAtribute
MaskBurnAttribute(Point3f, Transform3D, int, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Constructor for the burn attributes.
maskBurnVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Mask burning center attribute.
maskBurnVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Reference to Mask burning attribute.
maskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
maskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
maskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
maskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
maskCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
maskCenter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: The kernel.
maskCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
maskCurrent - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: Labels for values of the mask trim points property
maskDisplay(int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Display binary mask images.
maskE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskE - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
maskExpanded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
maskExpanded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint
maskExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maskExtents - Variable in class gov.nih.mipav.model.file.FileInfoSPAR: Mask extents
maskFileDir - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskFileInfo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
maskFileInfo - Variable in class gov.nih.mipav.model.file.FileMATLAB
maskFileInfo2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
maskFileInfo2 - Variable in class gov.nih.mipav.model.file.FileMATLAB
maskFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskFlag - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
maskGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
maskGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Mask image to extract surface from.
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Mask image to extract surface from.
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Used in geodesic dilation, geodesic erosion, morphological reconstruction by dilation, and morphological reconstruction by erosion Not used in opening by reconstruction and closing by reconstruction
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuantify: The mask image.
maskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
maskImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The mask image generated from the VOIs within the image.
maskImage - Variable in class gov.nih.mipav.model.file.FileMATLAB
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: mask Image *
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
maskImage - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
maskImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: Mask image for the tensor calculation
MaskImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the mask image.
maskImage1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: mask image 1
maskImage2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
maskImage2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: mask imag 2
maskImage2 - Variable in class gov.nih.mipav.model.file.FileMATLAB
maskImageRB - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
maskImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
maskImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
maskImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
maskImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
maskImageTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
maskIndex - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maskInsideVoxels(int, ModelImage, ModelTriangleMesh[], boolean, boolean, boolean, float, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Mask the mesh surface volume in voxels.
maskLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
maskLargest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maskList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
maskList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskMaximum - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: Labels for values of the mask trim points property
maskMinimum - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: Labels for values of the mask trim points property
maskN - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskN - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
maskName - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
maskName - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
maskOrigin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
maskPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
maskPanelClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Close declearation.
maskPanelErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
maskPanelOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
maskPanelSkeletonize - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
maskPositions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maskRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskS - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskS - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
maskSD - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
maskSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
maskStdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
maskSupplied - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
maskTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
maskText - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maskThresAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
maskThresAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
maskThresAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
maskThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
maskThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
maskThresholdField - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
maskToPaint() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
maskToPaint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
maskToPaint() - Method in class gov.nih.mipav.view.ViewJFrameImage
maskToPaint() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
maskToPaint() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
maskToPaint() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
maskToVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
maskToVOI(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Convert mask image to VOI
maskTrimSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: Sliders for setting the mask and voi trim parameters
maskType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
maskType - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
maskVOIFill(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Fill pixels inside VOI.
maskVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
maskVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
maskW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
maskW - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
massCenterDescription - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
massCenterDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
massCenterDescriptionB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
massCenterDescriptionG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
massCenterDescriptionR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
massI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
master - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
master_selection(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
masterHashtable - Static variable in class gov.nih.mipav.model.file.DicomDictionary: Hashtable filled with known DICOM tags with empty value attributes.
masterImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
masterPrivateTreeMap - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary: TreeMap filled with known DICOM tags with empty value attributes.
masterScrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: master scroll pane in which to display all information.
masterScrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: master scroll pane in which to display all information.
mat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
Mat() - Constructor for class gov.nih.mipav.model.algorithms.libdt.Mat
Mat(double[][]) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Mat
Mat(int, int[], int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Mat
Mat(int, int[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Mat
Mat(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Mat
Mat_rm() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
Mat_rm_type() - Constructor for enum gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type
mat33_colnorm(Matrix) - Method in class gov.nih.mipav.model.file.FileNIFTI: max column norm of 3x3 matrix.
mat33_polar(Matrix) - Method in class gov.nih.mipav.model.file.FileNIFTI: Polar decomposition of a 3x3 matrix: finds the closest orthogonal matrix to input A (in both Frobenius and L2 norms).
mat33_rownorm(Matrix) - Method in class gov.nih.mipav.model.file.FileNIFTI: max row norm of 3x3 matrix.
mat4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: Blending matrix for a 4th degree Bspline.
matB0T2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Transformation matrix from registering B0 to T2.
match - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
match(Color, Color) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
match_desc(SIFT3D.SIFT3D_Descriptor, SIFT3D.SIFT3D_Descriptor_store, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
match_ref - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
match_src - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
match1d(Vector<Integer>, Vector<Integer>, int[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
matchAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
matchBtoA() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: matchBtoA pA and pB are 2 3D point sets (pointSetA and B).
matchBtoA() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: matchBtoA pA and pB are 2 3D point sets (pointSetA and B).
matchCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
matched(int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage
matches(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
matches(FileFilter, int) - Static method in class gov.nih.mipav.view.ViewImageFileFilter: Determines if the given file filter's description matches the description associated with the given filterType.
matchHistogramAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
matchHistogramSliceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: If this 2D black and white image is present, it is matched to the closest slice and/or color in the source image model by looking for the closest match of the weights of the principal components.
matchImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: model images
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Register match image to base image.
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Match image - register match image to base image.
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Match image - register match image to base image.
matchImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
matchImages(ModelImage, ModelImage, boolean, boolean, double, double, double, double) - Method in class gov.nih.mipav.view.ViewJFrameBase
matchOrientation(int[], int[], int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Returns the axisOrder and axisFlip arrays for mapping axisB image orientation onto axisA image orientation.
matchOrients - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
matchOrigBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
matchOrigin() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Add image margins to image B, or crop to match Image A.
matchOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
matchOriginsExtents(ModelImage, ModelImage, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Matches the origins and extents of the two input images.
matchPts - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
matchResolutions(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Match the resolutions of the two images.
MatchSlices - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
MatchSlices(int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
MatchSlices(int, int, int, Model) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
MatchTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
matchUnits(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Matches the units of measure for the two input images.
Material - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
mathAlgo - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: ref to AlgorithmRGBConcat*
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: ref to AlgorithmRGBConcat
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
mathAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: ref to AlgorithmRGBConcat*
MATLAB - Static variable in class gov.nih.mipav.model.file.FileUtility: extension .mat
matlab_mod(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
matMult(int, double[][], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
matr1 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
matr1 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
matr2 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
matr2 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
matRegistered - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Array of transformation matrices after registering the DWI image series to the B0 reference volume.
matricesFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
matrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Matrix that gives best transformation.
matrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Matrix that gives best transformation.
matrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem: Matrix that gives best transformation.
matrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem: Matrix that gives best transformation.
matrix - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix that gives best transformation.
matrix - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
matrix - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: Transformation matrix.
matrix - Variable in class gov.nih.mipav.model.file.FileInfoMGH
matrix - Variable in class gov.nih.mipav.model.file.FileInfoOME: DOCUMENT ME!
matrix - Variable in class gov.nih.mipav.model.file.FileMetaImage
matrix - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
matrix - Variable in class gov.nih.mipav.model.file.FileNIFTI: MIPAV matrix used for storing qform or sform transformation information.
matrix - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
matrix - Variable in class gov.nih.mipav.model.structures.jama.JamaMatrix
matrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
matrix - Variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: DOCUMENT ME!
matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
Matrix() - Constructor for class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Constructor to create identity matrix.
MATRIX - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: .tps contains int N and float C[][] for thin plate spline
matrix_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
matrix_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrixPreconditionerWrapper
matrix2 - Variable in class gov.nih.mipav.model.file.FileNIFTI: When qform_code > 0 and sform_code > 0, the qform transformation information is stored in matrix and the sform transformation information is stored in matrix2.
matrixBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Box to hold the matrices parsed from the MatrixHolder.
matrixCol - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
matrixComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
matrixComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
matrixComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
matrixComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
matrixComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
matrixComboBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
matrixd - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix that gives best transformation.
MatrixDataStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
matrixDeterminationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
matrixDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
matrixDirText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
MatrixEntry - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
MatrixEntry() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.MatrixEntry
MatrixEntry(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.MatrixEntry
matrixFile - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
matrixFile - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
matrixFileMenu() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Allows the user to select matrix file.
matrixFileMenu() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Allows the user to select matrix file.
matrixFName - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
matrixFName - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
matrixHolder - Variable in class gov.nih.mipav.model.structures.ModelImage: Holds all of the images associated matrices.
MatrixHolder - Class in gov.nih.mipav.model.structures: Class that stores matrices (owned by ModelImage) with accessor functions to the matrix map/adding and changing matrices.
MatrixHolder(int) - Constructor for class gov.nih.mipav.model.structures.MatrixHolder: Default constructor.
matrixLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
matrixLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
matrixLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
matrixLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
matrixLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
MatrixListItem(double) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Creates new minimum object, with identity transMatrix and a given cost.
MatrixListItem(double) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Creates new minimum object, with identity transMatrix and a given cost.
MatrixListItem(double, TransMatrixd, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
MatrixListItem(double, TransMatrixd, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
MatrixListItem(double, TransMatrixd, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
MatrixListItem(double, TransMatrixd, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
MatrixListItem(double, TransMatrixd, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
MatrixListItem(double, TransMatrix, double[]) - Constructor for class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Creates new minimum object, setting the data and copying the point array explicitly.
matrixMap - Variable in class gov.nih.mipav.model.structures.MatrixHolder: Linked hash map that will store all of the images associated matrices.
MatrixMatrixMultiply(int, double[], int, int, double[][], int, int, double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MatrixMatrixMultiply(int, double[], int, int, double[], int, int, double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MatrixMatrixMultiply(int, double[], int, int, int, double[][], int, int, double[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MatrixMatrixMultiply(int, int, int, int, int, double[], int, int, int, double[], int, int, int, double[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
matrixMultiply(double[][], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
matrixMultiply(TransMatrix, float[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
MatrixParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
matrixQ - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
matrixRow - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
matrixS - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
matrixSize1 - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
matrixSize1Index - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
matrixSize2 - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
matrixSize2Index - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
matrixSizeX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 30.
matrixSizeY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 32.
matrixToDICOMString(TransMatrix) - Static method in class gov.nih.mipav.model.structures.ModelImage: Convert the matrix to the String format (decimal string) to be stored in the DICOM tag (0020,0037) image (patient) orientation.
matrixtoInverseArray(TransMatrix) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Converts matrix to inverse array.
matrixToString(int, int) - Method in class gov.nih.mipav.model.structures.TransMatrix: Produces a string of the matrix values.
matrixToString(int, int) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Produces a string of the matrix values.
MatrixTransposeMatrixMultiply(int, int, int, int, int, double[], int, int, int, double[], int, int, int, double[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MatrixTransposeVectorMultiply(int, int, int, double[], int, int, int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
matrixTwoDim - Variable in class gov.nih.mipav.model.file.FileNIFTI: MIPAV matrix used for storing qform or sform transformation information for 2D images.
matrixVector - Variable in class gov.nih.mipav.model.file.FileImageXML: Vector to hold matrices while they are being read in for the header (until they are added to the image
matrixVector - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
MatrixVectorMultiply(int, int, int, double[], int, int, int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MATRX - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
matupd(int, int, double[][], double[][], double[][], double[][], double[], double[], int[], int, int[], int[], double[], double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: maximum, minimum size of objects.
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: maximum, minimum size of objects.
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: maximum, minimum size of objects.
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: maximum, minimum size of objects.
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Used to store the image maximum.
max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
max - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdhyperrect
max - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Used to store the image maximum.
max - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Storage or min and max values.
max - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image maximum intensity for single channel image.
max - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Maximum intensity values of image.
max - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum image intensity.
max - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: or if the source image is to be replaced.
max - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel
max - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
max - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: DOCUMENT ME!
max - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
max - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.Linking
max(double[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the maximum value found in a double array.
max(float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the maximum value found in a float array.
max(float, float) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Computes the maximum of two floating point numbers passed in.
max(short[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the maximum value found in a short array.
max(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
Max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
Max - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage
Max() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Finds the maximum element in the vector.
MAX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
MAX - Variable in class gov.nih.mipav.model.structures.HQueue: DOCUMENT ME!
max_98P - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Value representing 98% of the histogram count:
max_alloc_chunk - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr
MAX_ALLOC_CHUNK - Static variable in class gov.nih.mipav.model.file.libjpeg
MAX_ALLOWED_DEVIATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
MAX_ALLOWED_DEVIATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
MAX_ALPHA_SIZE - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
max_angle - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
MAX_ANGLE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Maxium rotation angle.
MAX_ANGLE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Maxium rotation angle.
max_area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
max_area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
max_area - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
max_callocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
MAX_CLIP_PLANES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
MAX_CLIP_PLANES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
MAX_CLIP_PLANES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
MAX_CMDS - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MAX_CODE_LEN - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
max_col_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
max_col_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
MAX_COMPONENTS - Static variable in class gov.nih.mipav.model.file.libjpeg
MAX_COMPS_IN_SCAN - Static variable in class gov.nih.mipav.model.file.libjpeg
max_consecutive_nonmonotonic_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_consecutive_nonmonotonic_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_consecutive_nonmonotonic_steps_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
max_constr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
max_constr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
max_constr - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
max_constr - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
MAX_CUSTT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
MAX_DEGREE - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
MAX_DEGREE - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
MAX_DELTA - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
max_depth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
max_depth - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
max_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
max_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
max_diff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth: The maximum contribution to the potential of the difference between two neighboring pixel values.
max_diff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: The maximum contribution to the potential of the difference between two neighboring pixel values.
max_dim - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
max_dist - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
max_edge - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
MAX_EDGES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
max_eig_ratio - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
MAX_ENT - Static variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
max_epoch - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
max_eval - Variable in class gov.nih.mipav.model.algorithms.NelderMead
MAX_FILTS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
MAX_FLOAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
MAX_FLOAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
MAX_FLOAT - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
MAX_GRID_BORDER - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: maximum spacing of the border surrounding images in the light-box.
MAX_GRID_BORDER - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum spacing of the border surrounding images in the light-box.
MAX_GRID_COL - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: maximum column value (when it is the independent variable).
MAX_GRID_COL - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum column value (when it is the independent variable).
MAX_GRID_ROW - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: maximum row value (when it is the independent variable).
MAX_GRID_ROW - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum row value (when it is the independent variable).
MAX_GRID_SIZE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: maximum spacing in-between images in the light-box.
MAX_GRID_SIZE - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum spacing in-between images in the light-box.
max_h_samp_factor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
max_hallocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
MAX_IFD_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
MAX_IFD_LENGTH - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
max_index - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
max_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
MAX_INITIAL_TRI_IMAGES - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Maximum number of initial tri-images!
max_inner_iter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
max_inneriter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
max_it - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
max_it - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
MAX_IT - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
max_iter - Variable in class gov.nih.mipav.model.algorithms.NelderMead
max_iter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
max_iter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron
MAX_ITERATIONS - Static variable in class gov.nih.mipav.model.algorithms.Cephes
MAX_ITERATIONS - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
MAX_ITERS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MAX_ITR - Static variable in class gov.nih.mipav.model.algorithms.NLFittedFunction: Max number of iterations to perform.
MAX_JBUFS - Variable in class gov.nih.mipav.model.structures.jama.METIS
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_lbfgs_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
max_levels - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
MAX_LEVELS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
max_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_line_search_step_expansion - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_line_search_step_expansion - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_line_search_step_expansion - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_linear_solver_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_lm_diagonal - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_lm_diagonal - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
max_localmem_fft_size - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
MAX_LOG_LEVEL - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
MAX_MAGNIFICATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Maximum possible magnification.
MAX_MAGNIFICATION - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
MAX_MAGNIFICATION - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum amount of magnification in the light-box.
max_memory_to_use - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr
max_mu_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
max_nonzeros_w - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
max_num_consecutive_invalid_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_num_consecutive_invalid_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
MAX_NUM_COORDS - Static variable in class gov.nih.mipav.view.ViewJComponentFunct: Maximum size of the coordinate arrays.
max_num_corrections_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
MAX_NUM_FUNCTS - Static variable in class gov.nih.mipav.view.ViewJComponentGraph: Maximum number of functions that the graph may display.
max_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
max_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
max_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_num_line_search_direction_restarts - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_num_line_search_direction_restarts - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_num_line_search_direction_restarts - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_num_line_search_step_size_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_num_line_search_step_size_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_num_line_search_step_size_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
max_num_nonzeros_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
max_num_nonzeros_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
max_num_ridders_extrapolations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
max_num_unique_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
MAX_POINTS - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
MAX_POINTS - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Maximum number of correspondence points.
MAX_PRINT_DIGITS - Static variable in class gov.nih.mipav.util.DoubleDouble
MAX_PROCESS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
max_progress - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.showProgress
MAX_PTS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.poly
MAX_Q_COMPS - Static variable in class gov.nih.mipav.model.file.libjpeg
max_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
max_radius_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
max_radius_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
max_radix - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
MAX_READ_LENGTH - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: The maximum read buffer size.
MAX_ROTATION - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: values returned by the device during poll (may not be correct)
max_row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
max_row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
MAX_SAMP_FACTOR - Static variable in class gov.nih.mipav.model.file.libjpeg
MAX_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MAX_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
MAX_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
MAX_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
MAX_SELECTED_GRID_BORDER - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: maximum spacing of the selection border surrounding images in the light-box.
MAX_SELECTED_GRID_BORDER - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Maximum spacing of the selection border surrounding images in the light-box.
MAX_SELECTORS - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
max_solver_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
max_solver_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_solver_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
max_stable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
max_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
max_step_expansion - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
max_step_solver_retries - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
max_tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: maximum number of tiles at the decoder
max_tol - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
max_tol - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
MAX_TRANSLATION - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
MAX_TRIANGLES - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
max_trust_region_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
MAX_USER_DATA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyReader
max_v_samp_factor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
max_value - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlPgmImage: < image height.
max_variation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
max_variation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
max_variation - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
MAX_VELOCITY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Maxium rotation velocity.
MAX_VELOCITY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Maxium rotation velocity.
MAX_WIDGETS - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: The maximum number of widgets that can be added to the display.
max_work_item_per_workgroup - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
max1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
max1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
max1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Minimum and maximum buffer and secondBuffer areas.
max1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Minimum and maximum buffer and secondBuffer areas.
max2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
max2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
max2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Minimum and maximum buffer and secondBuffer areas.
max2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Minimum and maximum buffer and secondBuffer areas.
max2DPt(int, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: A function that finds the maximum value in a local image rectangle.
max3(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Returns the maximum of 3 values
max3DPt(int, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: A function that finds the maximum value in a local image volume.
maxA - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
maxA - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
maxA - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
maxAB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxaccess - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
maxaccess - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
maxAdjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxAdjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxAdjustExpLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxAdjustExpLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxAG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxAngle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
maxAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
maxAnisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxAnisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxAnisotropyMaxLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxAnisotropyMaxLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxAnisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxAnisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxAnisotropyMinLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxAnisotropyMinLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxAperture - Variable in class gov.nih.mipav.model.file.FileSVS
maxAperture - Variable in class gov.nih.mipav.model.file.FileTiff
maxAR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxAttenuation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The maximum amount of attenuation to perform (between 0 and 1).
maxAttenuation - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The maximum amount of attenuation to apply to the image (0 = no attenuation, 1 = full attenuation).
maxAttenuationTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Maximum attenuation text field.
maxAvailableEntry - Variable in class gov.nih.mipav.model.file.FileSVS
maxAvailableEntry - Variable in class gov.nih.mipav.model.file.FileTiff
maxB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
maxB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
maxB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
maxB - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image maximum intensity for the blue channel of an RGB image.
maxB - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Maximum intensity values of image.
maxB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Max intensity values in Red, Green and Blue images respectively.
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
maxb1 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
maxb1 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
maxBB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxBG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxBins - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
maxBins - Variable in class gov.nih.mipav.view.ViewJFrameGraph
maxBound - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: maxBound is a bound on the number of terms used in the Durbin formula.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The largest of xBox,yBox,and zBox.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: x, y, z box size.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: ModelImage max dimension: (Extents * resolutions).
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: MaxBox value from the parent frame.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: The maximum of the fram box values.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
maxBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
maxBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: x, y, z box size.
maxBR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
maxBufferSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
maxBufferSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
maxBufferSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: The maximum Hough transform size in megabytes - default is currently 256
maxBufferSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: The maximum Hough transform size in megabytes - default is currently 256
maxBufferSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: The maximum Hough transform size in megabytes - default is currently 256
maxBufferSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: The maximum Hough transform size in megabytes - default is currently 256
maxBufferText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
maxBufferText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
maxBufferText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
maxBV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxC - Variable in class gov.nih.mipav.model.file.FileZVI
maxcall - Variable in class gov.nih.mipav.model.algorithms.Lmmin: maximum number of iterations
maxChange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
maxChange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
MAXCHUNK - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
MAXCHUNK - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
maxcode - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: mincode[index] = minimum legal code at that index.
maxcode - Variable in class gov.nih.mipav.model.file.libjpeg.d_derived_tbl
maxCode - Variable in class gov.nih.mipav.model.file.FileSVS
maxCode - Variable in class gov.nih.mipav.model.file.FileTiff
MAXCODE - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
MAXCODE - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
MAXCOL - Variable in class gov.nih.mipav.model.algorithms.libdt
maxColorRange - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxColorRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxColorRangeLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxColorRangeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxColumn - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
maxCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxCountB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxCountG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxCountR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxCyclesText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
maxCyclesText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
maxDebugLineField - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
maxDegreesBinWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
maxDegreesBinWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
maxDegreesBinWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: For theta must have bin width <= maxDegreesBinWidth
maxDegreesBinWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: For theta must have bin width <= maxDegreesBinWidth
maxDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The most we can get away from the initial seed point intensity value (151).
maxDepth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction
maxDepth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes
maxDepth() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
maxDepthLeaves(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
MaxDerivativesPerResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
maxDim - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The largest dimension of xDim, yDim and zDim.
maxDim() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
maxDimensions - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
maxDimGreen - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxDimGreen - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxDimGreenLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxDimGreenLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxDist - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
maxDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
maxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
maxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
maxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
maxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
maxDistance - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
maxDistLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxDistTextF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxDomain - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
maxDomainField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
maxDomainLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
maxEllipseFindCycles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
maxEllipseFindCycles - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Maximum number of pointSetsRequired triplet point acqusitions that is allowed to occur
maxEMIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
maxEMIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
maxenergy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
maxEntCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
maxEntropyEnhance(ModelImage, boolean[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
maxEntropyEnhanceColor(ModelImage, boolean[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
maxEntropyThreshold - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
MAXER - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
maxExponent - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
maxExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
maxExtents - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
MAXFAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxfev - Variable in class gov.nih.mipav.model.algorithms.Lmmin: maxfev is a positive integer input variable.
maxField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
maxField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
MaxFuncEval() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: get the number of evaluations
maxG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
maxG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
maxG - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image maximum intensity for the green channel of an RGB image.
maxG - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Maximum intensity values of image.
maxG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Max intensity values in Red, Green and Blue images respectively.
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
MAXGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxGamma - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxGamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxGammaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxGammaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxGV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxHeapLAX - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Flag to the java-runtime (as used in the LAX-files) to indicate an maximum heap-size memory-option.
maxHeapOption - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Flag to the java-runtime (as used in the XML-files) to indicate an maximum heap-size memory-option.
maxHeapText - Variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: DOCUMENT ME!
maxHor - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
maxHor - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
maxHyperbolaFindCycles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
maxHyperbolaFindCycles - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Maximum number of pointSetsRequired triplet point acquisitions that is allowed to occur
maxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Image's maximum intensity.
maxImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Image's maximum intensity.
maximization(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
maximum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: original image maximum.
maximum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
maximum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
maximum - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
maximum - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
maximum - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: When true, calculate the maximum (X,Y,Z) slices.
maximum - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
MAXIMUM - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: maximum
MAXIMUM - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
MAXIMUM_LIKELIHOOD_ESTIMATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
MAXIMUM_PHASE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
MAXIMUM_PHASE - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
maximum_relative_error - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
maximumB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
maximumButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
maximumCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: CheckBox turns on/off calculating the maximum projection.
maximumConvergenceLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
maximumCorrection - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
maximumCorrection - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
maximumDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders
maximumDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
maximumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
maximumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
maximumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maximumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
maximumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
maximumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maximumFuzzy - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
maximumIterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maximumL - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Labels to display max/min slider values.
maximumLB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumLevel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
maximumLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
maximumLevelsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
maximumLG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumLikelihoodEstimation - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
MaximumLinesDocumentListener - Class in gov.nih.mipav.view
MaximumLinesDocumentListener(int) - Constructor for class gov.nih.mipav.view.MaximumLinesDocumentListener
MaximumLinesDocumentListener(int, long) - Constructor for class gov.nih.mipav.view.MaximumLinesDocumentListener
maximumLR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
maximumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maximumNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
maximumNonZeroElements - Variable in class gov.nih.mipav.model.file.FileMATLAB
maximumNumberOfIterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
maximumNumberOfLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
maximumNumberOfLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
maximumPixelCount - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
maximumPixelCountIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
maximumPixelCountInGroup - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
maximumPixelCountInGroupIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
maximumPossibleBValue - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
maximumR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
maximumRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
maximumRRInterval - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
maximumRRInterval - Variable in class gov.nih.mipav.model.file.FilePARREC
maximumRRIntervalIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
maximumRRIntervalPos - Variable in class gov.nih.mipav.model.file.FilePARREC
maximumSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: When adaptiveSize is true, the maximum size the kernel mask can be increased to.
maximumSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
maximumText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
maximumThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
maximumThresholdDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
maximumU - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumUB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumUG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumUR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumValue - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumValueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumValueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Buttons to set max/min slider values.
maximumValueField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maximumValueField - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Text fields for user to enter max/min slider values.
maximumx - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
maxInput - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for maximum value of threshold.
maxInputB - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for maximum Blue value of threshold.
maxInputG - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for maximum Green value of threshold.
maxInputR - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for maximum Red value of threshold.
maxIntenBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxIntenGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxIntenRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: max intensities for threshold
maxIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
maxIntensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
maxIntensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
maxIntensity - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Maximum intensity threshold value.
maxIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
maxIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Maximum intensity threshold.
maxIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: max intensities calculatd using std dev
maxIntensity - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The maximum value which can be chosen in the intensity spinner.
maxIntensityB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: max intensities for threshold
maxIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Maximum Blue intensity threshold.
maxIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: max intensities calculatd using std dev
maxIntensityG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: max intensities for threshold
maxIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Maximum Green intensity threshold.
maxIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: max intensities calculatd using std dev
maxIntensityR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: max intensities for threshold
maxIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Maximum Red intensity threshold.
maxIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: max intensities calculatd using std dev
maxiter - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
maxiter - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions
maxiter - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions
maxiter - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
maxIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.model.algorithms.LsqFit
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Advanced optimization settings maxIter in the call to ELSUNC will be an integer multiple of baseNumIter.
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Advanced optimization settings maxIter in the call to Powell's will be an integer multiple of baseNumIter.
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Limits number of iterations in ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL optimization.
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Limits number of iterations in ELSUNC optimization. maxIter in the call to ELSUNC will be an integer multiple of baseNumIter
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Limits number of iterations in elsunc optimization. maxIter in the call to elsunc will be an integer multiple of baseNumIter
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Advanced optimization settings maxIter in the call to ELSUNC will be an integer multiple of baseNumIter.
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
maxIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Advanced optimization settings maxIter in the call to Powell's will be an integer multiple of baseNumIter.
maxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
maxIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
MAXITER - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
MAXITER - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The maximum number of iterations the optimization allows.
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The maximum number of iterations the optimization allows.
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: The maximum number of iterations the optimization allows.
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: The maximum number of iterations the optimization allows.
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
maxIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: The maximum number of iterations the optimization allows.
maxIterations - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
maxIterations - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
maxIterations - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
MaxIterations() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: get limit for the number of iterations
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
maxIterations_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
maxIterationsText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
maxIters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Maximum number of iterations.
MAXJSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
MAXL2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxLabel - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.Renum
maxLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
maxLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
maxLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
maxLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength: The maximum length - default is zero.
maxLength - Variable in class gov.nih.mipav.view.JPanelEditDefault: DOCUMENT ME!
maxLength - Variable in class gov.nih.mipav.view.JPanelEditSetOrParam: DOCUMENT ME!
MAXLGM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxLimits - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: when done debugging: private boolean limitTranslation = false, oneTransLimit = false;.
maxLines - Variable in class gov.nih.mipav.view.MaximumLinesDocumentListener
maxLinesListener - Variable in class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea
MAXLOG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxM0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
maxM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
maxM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
maxM0Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
maxM0Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
maxMAPIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
maxMAPIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
maxmarknum - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t: actual size of markers array
maxmarknum - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: actual size of markers array
maxMemoryUsage - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
MAXMIN_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
MAXMIN_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
maxMinInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
maxnads - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
maxNoiseLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
maxNoiseLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
maxnum - Variable in class gov.nih.mipav.model.algorithms.ODE
maxnum - Variable in class gov.nih.mipav.model.algorithms.ODEEP
MAXNUM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
MAXNUMCOLORS - Variable in class gov.nih.mipav.model.file.libjpeg
maxNumIterations - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Current iterations number.
maxNumOpsInvoked - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem: Indicates the maximum number of operations invoked.
maxNumOpsPerformed - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem: Indicates the maximum number of operations performed.
maxNumOrientations - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < the base scale of the gss.
MaxObject - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
maxOfMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Whether to use the maximum of the minimum resolutions of the 2 images when respampling during registration against the flipped image.
maxOfMinResol - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
maxOfMinResol - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxOfMinResol - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
maxOfMinResol - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
maxOfMinResol - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
maxp1 - Variable in class gov.nih.mipav.model.algorithms.Integration2: gives an upper bound on the number of chebyshev c moments which can be stored, i.e. for the c intervals of lenghts abs(b-a)*2**(-l), c l=0,1, ..., maxp1-2, maxp1.ge.1. c if maxp1.lt.1, the routine will end with ier[0] = 6.
maxp1 - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: gives an upper bound on the number of chebyshev c moments which can be stored, i.e. for the c intervals of lenghts abs(b-a)*2**(-l), c l=0,1, ..., maxp1-2, maxp1.ge.1. c if maxp1.lt.1, the routine will end with ier[0] = 6.
maxPagePanelSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
maxPagePanelSizeX - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
maxPagePanelSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
maxPagePanelSizeY - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
maxPanelWidth - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The max width of the control panels.
maxPanelWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The max width of the control panels.
MaxParametersPerResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
maxpasses - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
maxPixelBinWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
maxPixelBinWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
maxPixelBinWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: For xCenter, yCenter, r1, and r2 must bin width <= maxPixelBinWidth
maxPixelBinWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: For xCenter, yCenter, r1, and r2 must bin width <= maxPixelBinWidth
maxPointDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
maxPointDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
maxPointDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Largest allowable distance between 2 of 3 picked points
maxPointDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Largest allowable distance between 2 of 3 picked points
maxPointText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
maxPointText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
maxPosition - Variable in class gov.nih.mipav.model.file.FileZVI
maxPossibleCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
maxPossibleCost - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
MAXPOW - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
maxProbability - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate maximum probability maximum probability is the largest probability value within the window.
maxProbability - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate maximum probability maximum probability is the largest probability value within the window.
maxProbability - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
maxProbability - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
maxProbabilityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
maxProbabilityCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
maxProgressValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Used to store the maximum value of the progress bar.
maxPyrHt(int, int, int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
maxR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
maxR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
maxR - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image maximum intensity for the red channel of an RGB image.
maxR - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Maximum intensity values of image.
maxR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Max intensity values in Red, Green and Blue images respectively.
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
maxR1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
maxR1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
maxR2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
maxR2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
maxRad - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice
maxRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
maxRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maxRadiusLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maxRadiusText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
maxRange - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
maxRange - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
maxRangeField - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
maxRangeLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
maxRegions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
maxRenExtent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: max Extent of X, Y dimensions.
MaxResidualsPerResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
maxResol - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Flag to determine if the maximum of the minimum resolutions of the two datasets should be used.
maxResol - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Flag to determine if the maximum of the minimum resolutions of the two datasets should be used.
maxResol - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Flag to determine if the maximum of the minimum resolutions of the two datasets should be used.
maxResol - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Flag to determine if the maximum of the minimum resolutions of the two datasets should be used.
maxResultImageSlicesLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxResultImageSlicesLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxRow - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
maxRV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxRz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
maxs - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: DOCUMENT ME!
maxs - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
maxSatBlue - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxSatBlue - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxSatBlueLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxSatBlueLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxSatVsTheta - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxSatVsTheta - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxSatVsThetaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxSatVsThetaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
maxScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: range of max - min over local kernel, slice, or entire image.
maxScaleRule - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: flag how/when to set the maximum scale. default per slice
MaxScratchDoublesNeededForEvaluate() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
maxSizeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxSizeTextF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxSlicePreview - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Single slice preview images
maxSliceWindow - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Windows containing preview images
maxSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
MaxSolverIterationsReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
MaxSolverTimeReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
maxSplineLength - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
maxstat(Vector<Double>, Vector<Double>, Vector<Integer>, double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
MAXSTAT - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
maxstatPValueLau92(double, double, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
maxstatPValueLau94(double, double, double, int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
maxstatPValueUnadjusted(double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
maxStevensBeta - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
maxStevensBeta - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
maxStevensBetaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
maxStevensBetaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
MAXSTIR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
maxSubLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
MAXSUBLENGTH - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DOCUMENT ME!
maxSum - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
MAXSUM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Indicates that the maximum summation cost function should be used (this is the perferred cost function).
MAXSUM - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
maxT - Variable in class gov.nih.mipav.model.file.FileZVI
maxT1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
maxT1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
maxT1Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
maxT2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
maxT2Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
maxText - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Min, max text fields.
maxText - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Min, max text fields.
maxText - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Min, max text fields.
maxTimes - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
maxTimesValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
maxTimeValue - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
maxTransTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxTransTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxTransTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
maxTx - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
maxTy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
maxutil - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
maxV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
maxVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
maxVal - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Used during saturation (2^bitdepth-1 if unsigned, 2^(bitdepth-1)-1 if signed)
maxVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
maxVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
maxValsD - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
maxValTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: textfield inputs for window and level *
maxValue - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
maxValue - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxValue - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
maxValueB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxValueG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxValueR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
maxValuesChange - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF
maxVert - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
maxVert - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
maxvotefilt(libdt.Mat[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt
maxvwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
maxWidth(boolean) - Method in class gov.nih.mipav.model.structures.VOI: Finds 2 points that form the maximum width of the VOI.
maxWidthDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
maxWorkSize - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Maximum number of work items in a work group on OpenCL.
maxx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
maxX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MaxX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Find the maximum x component of the shape.
MaxX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Find the maximum x component of all shapes.
maxy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
maxY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MaxY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Find the maximum y component of the shape.
MaxY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Find the maximum y component of all shapes.
maxZ - Variable in class gov.nih.mipav.model.file.FileZVI
maxZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MaybeReorderSchurComplementColumnsUsingEigen(int, HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MaybeReorderSchurComplementColumnsUsingSuiteSparse(CeresSolver.OrderedGroups<double[]>, CeresSolver.Program) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
mB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
mb_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
mBMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
mBrushSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: current paint brush size
mBrushSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: current paint brush size
mBrushSizeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint brush size text field
mBrushSizeText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint brush size text field
mButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Button group for paint functions:
mButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Button group for paint functions:
mc - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Global model clip object.
mc1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc10 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc11 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc12 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc13 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc14 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc15 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc16 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc17 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc18 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc19 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mc9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mcArbi - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Global model clip object.
mcArbiBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Branch group of the arbitrary clipping plane.
mcArbiExtendBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Branch group of the arbitrary clipping plane.
mcArbiTG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: ModelClip arbitrary TransformGroup.
mcArbiTrans3D - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
mcBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Branch group of the 6 clipping planes.
mCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Surface center.
mcExtendBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Branch group of the arbitrary clipping plane.
mcIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData
mcleanupregions(int[][], double) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
mColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Color of surface.
mColorChooser - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Color Chooser dialog.
mColorChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Color Chooser dialog.
mColorPaintButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Color selection button
mColorPaintButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Color selection button
mComparator - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort
mComparator - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort
mcore - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
mcp_bounds() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
MCPMETIS_DEFAULT_UFACTOR - Variable in class gov.nih.mipav.model.structures.jama.METIS
mCrc - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
mCrc - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
mcStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Global model clip object.
mcStaticBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Branch group of the static clipping plane.
MCSVM_CS - gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType: multi-class support vector classification by Crammer and Singer
mct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: multi-component transform identifier
mct - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t: multi-component transform identifier
MCT_ELEMENT_SIZE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
mct_norms - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: encoding norms
MCT_TYPE_DOUBLE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
MCT_TYPE_FLOAT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
MCT_TYPE_INT16 - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
MCT_TYPE_INT32 - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
mctype_et() - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.mctype_et
MCU_blocks - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
MCU_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
MCU_ctr - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
MCU_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
MCU_membership - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
MCU_rows_in_scan - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
MCU_rows_per_iMCU_row - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
MCU_sample_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
MCU_vert_offset - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
MCU_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
mcuCols - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
mcuCols - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
mcuHeight - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
mcuHeight - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
mcuRows - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
mcuRows - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
MCUs_per_row - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
mcuWidth - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
mcuWidth - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
MD - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
md1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md10 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md11 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md12 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md13 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md14 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md15 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md16 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md17 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md18 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md19 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
md9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
mdbglvl - Variable in enum gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
mdbglvl_et(int) - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
mdg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: Leading dimension of array gmat mdg must be >= param if secondAllowed is true.
mdg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: Leading dimension of array gmat mdg must be >= param if secondAllowed is true.
mdima - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
MDNBT(double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
mDropperButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint dropper button
mDropperButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint dropper button
MDStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
mdwt() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
me - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
mean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate gray level co-occurrence matrix mean Sum over i,j of i * Probability(i,j) = Sum over i,j of j * Probability(i,j).
mean - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate gray level co-occurrence matrix mean Sum over i,j of i * Probability(i,j) = Sum over i,j of j * Probability(i,j).
mean - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
mean - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: For Poisson out = gain * Poisson(mean) + offset
mean - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
mean - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
mean - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: red, green, and blue origContrast remains constant until applyButton is pressed, restores contrast if cancelButton is pressed.
mean(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Finds the mean value (average) in the list.
Mean() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Calcs the mean value of the matrix.
Mean() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the mean value of the vector.
MEAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
MEAN_CENTER - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
MEAN_CENTER - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Use serialVersionUID for interoperability.
mean_I - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
mean_I_b - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
mean_I_g - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
mean_I_r - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
MEAN_SQUARED_ERROR - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
MEAN_SQUARED_ERROR - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
meanAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
meanAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
meanAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
meanAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
meanBlueSquareError - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
meanButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
meanButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
meanCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
meanCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
MeanCol(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Calc the mean of each column into a vector.
meanCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
meanCurvatureDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
MeanDataItem() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the mean of all sample vectors.
meanFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
meanFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
meanFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
meanFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Haralick mean filter.
meanFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
meanFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
MeanFilter(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Performs a 3x3 mean filtering of a matrix.
meanGreenSquareError - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
meanImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
meanImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
meanImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
meanNegativeCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
meanNegativeCurvatureDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
MEANOFROIS_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
meanOfStdVector(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.libdt
meanOld - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
meanRedSquareError - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
means - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
MeanShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the mean shape.
MeanShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Calcs the mean shape of all shapes.
meanShapePolygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: mean shape polygon.
MeanShapeSize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the mean shape size, i.e. the size of the reference shape.
meanShift() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
MeanSize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Returns the average shape size *before* the aligment process.
meanSquareError - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
meanText - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
MeanTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the mean texture.
measure1 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
measure3 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
measure3 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
measure4 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
measure4 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
measure5 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
measureCost() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Calls cost function with point and saves result in functionAtBest.
measureCost() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Calls cost function with point and saves result in functionAtBest.
measureCost() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Calls cost function with inputed point and saves result in functionAtBest.
measureCost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Measure the cost value for the given transformation vector.
measureCost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
measureCost(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Measure the cost value for the given transformation vector.
measureCost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Measure the cost value for the given transformation matrix.
measureCost(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Measure the cost value for the given transformation matrix.
measuredWidthString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
measuredWidthString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
measurementFrame - Variable in class gov.nih.mipav.model.file.FileNRRD: The measurement frame is a basic (per-array) field specification (not per-axis), which identifies a spaceDim-by-spaceDim matrix, where spaceDim is the dimension of the word space (implied by space or given by space dimension).
measureTime - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
measureTime - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
MeasureTime() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Measure time
MeasureTime() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Measure time
measureTimeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
med - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
med - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
MED_SPEEDUP - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel
med3(char, char, char) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
med3(double[], int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter: Returns the index of the median of the three indexed doubles.
medCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
MEDIALNESS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: chooses the medialness cost
MEDIALNESS - Static variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
median - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
median - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: Median
median(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
median(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Finds the median value of the list.
Median() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the median.
MEDIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
MEDIAN_CENTER - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
MEDIAN_CENTER - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
median_cut(libjpeg.jpeg_decompress_struct, libjpeg.box[], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
median_rank(double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
median_rank_cens(double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
median2D(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Simple 3x3 median filter.
median3D(float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Simple 3x3x3 median filter.
medianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
medianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
medianAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
medianAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
medianB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
medianButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
medianButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
medianCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: The mask is basically Gaussian with standard deviation in image units - e.g. mm set by the user.
medianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
medianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
medianFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
medianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Haralick median filter.
medianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
medianFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
medianG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
medianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
medianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
medianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
medianImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
medianR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
medianVal - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
mediaPlayerButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: MS media player button to play AVI file.
mediastinumLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
mediastinumLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
mediastinumLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
mediastinumMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
mediastinumMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
mediastinumMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
mediastinumMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
mediastinumMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
mediastinumMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
medium - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
medium - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser
medium - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
MEDIUM - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Flag indicating medium priority transfer.
mediumCircularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
mediumSpeedUpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
MEDIVISION - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .bin.
mem - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
mem - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_common_struct
mem - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
mem_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
mem_buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
mem_buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
MEM_CHAR - gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode
MEM_DOUBLE - gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode
mem_flags - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
MEM_FLOAT - gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode
mem_usage_t() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.mem_usage_t
membership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
memCount - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
memdouble - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader
memdoublecomplex - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader
memImage - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
memImage - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
memImageA - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
memImageB - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
memImageDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
memImageDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
memint - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader
MemModel - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
memNum - Variable in enum gov.nih.mipav.model.structures.jama.SuperLU.MemType
memNum() - Method in enum gov.nih.mipav.model.structures.jama.SuperLU.MemType
memory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
MEMORY_ALLOCATOR_BLOCK_SIZE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
memory_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
memory_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
memory_saving_splitting - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
memory_saving_splitting - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
memory_saving_splitting - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
memoryallocation(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
memoryAllocation() - Method in class gov.nih.mipav.view.ViewUserInterface: Display memory allocation frame (request more from the JVM on next JVM-start).
MemoryAllocation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
memoryFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: Dialog that displays the used and available memory.
memoryFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Display memory usage frame.
MemoryMode() - Constructor for enum gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode
MemoryMonitor() - Constructor for class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: Constructor.
memoryUsageLabel - Variable in class gov.nih.mipav.view.ViewUserInterface: The label showing the current memory usage of MIPAV.
memoryUsageUpdater - Variable in class gov.nih.mipav.view.ViewUserInterface: The periodic thread which updates the memory usage display once every second.
MemoryUsageUpdater() - Constructor for class gov.nih.mipav.view.ViewUserInterface.MemoryUsageUpdater
memRec - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
mems - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
mems - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
memsBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
memsBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
memSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
memSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
MemType(int) - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.MemType
MEMZERO(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
menu - Variable in class gov.nih.mipav.view.ViewJFrameMessage: DOCUMENT ME!
menu - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph: DOCUMENT ME!
menu - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
MENU_Y_PADDING - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
menuBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: variables for the menubar.
menuBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Menu bar.
menuBar - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Menu bar.
menuBar - Variable in class gov.nih.mipav.view.ViewJFrameImage: Reference to the frame's menu bar.
menuBar - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Variables for the menubar.
menuBarMaker - Variable in class gov.nih.mipav.view.ViewJFrameImage: Constructs the image menu bar.
menuBuilder - Variable in class gov.nih.mipav.view.ViewJFrameImage: This object contains a number of useful functions for building a menu and querying the state of menu items.
menuBuilder - Variable in class gov.nih.mipav.view.ViewMenuBar: Menu and menu item generator.
menuBuilder - Variable in class gov.nih.mipav.view.ViewUserInterface: The object used to build and enable/select the menus.
menuDragMouseDragged(MenuDragMouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
menuDragMouseEntered(MenuDragMouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
menuDragMouseExited(MenuDragMouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
menuDragMouseReleased(MenuDragMouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
MenuDragOp() - Constructor for class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp
menuItemVector - Variable in class gov.nih.mipav.view.ViewMenuBuilder: Holder of all the menu items.
MenuMouse(int, JComponent, int) - Constructor for class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
menuObj - Variable in class gov.nih.mipav.view.JFrameHistogram: menu builder
menuObj - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Menu items storage.
menuObj - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Not used now.
menuObj - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Not used now.
menuObj - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Menu items storage.
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
menuObj - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Menu items storage.
mer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
mEraseAllButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Erase all button
mEraseAllButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Erase all button
mEraserButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Eraser paint button
mEraserButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Eraser paint button
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
merge - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
merge - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
merge_left(GenericPolygonClipper.polygon_node, GenericPolygonClipper.polygon_node, GenericPolygonClipper.polygon_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
merge_node(int, int, int[], int[], float[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
merge_right(GenericPolygonClipper.polygon_node, GenericPolygonClipper.polygon_node, GenericPolygonClipper.polygon_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
mergeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
merged - Variable in class gov.nih.mipav.model.file.FileBioRad: merged format.
merged_1v_upsample(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
merged_1v_upsample(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
MERGED_1V_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
merged_2v_upsample(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
merged_2v_upsample(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
MERGED_2V_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg
mergedClassifier() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: After apply the AAM segmentation.
mergeItem(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem: Creates a new mergeItem object.
mergeNearbyJunctionNodes(AlgorithmNetworkSnake.SnakeInitialiser.Node, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
mergeNodes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
mergeSegments() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
mergeSimilar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
mergeSimilar - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
mergeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
mergeThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
mesh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: DOCUMENT ME!
mesh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
mesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
mesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
Mesh - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate
Mesh() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Mesh
Mesh() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Mesh
Mesh(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
MESH - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
MeshEdgeIterator(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
MeshFaceIterator(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
MeshHalfEdgeIterator(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
meshIndex - Variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML: mesh index.
MeshModel - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
MeshModel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
meshName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MeshVertexIterator(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
message - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
message - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverSummary
message - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
message - Variable in enum gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE
message - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: DOCUMENT ME!
message - Variable in class gov.nih.mipav.view.dialogs.JDialogText: DOCUMENT ME!
message - Variable in class gov.nih.mipav.view.ProgressChangeEvent: The message which will be shown with the progress bar
message - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
message - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
message_id - Static variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
messageField - Variable in class gov.nih.mipav.view.ViewUserInterface: Message line at the bottom of the mainFrame.
messageFrame - Static variable in class gov.nih.mipav.view.Preferences: Reference to the message frame where debug information can be displayed.
messageFrame - Variable in class gov.nih.mipav.view.ViewUserInterface: Message area for multi-line text output.
messageLocked - Variable in class gov.nih.mipav.view.ViewJProgressBar: indicates if the message string (in the progress bar) is locked so that it wont be updated
messageLocked - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
messagePBar - Variable in class gov.nih.mipav.view.ViewJProgressBar: Label directly above the bar that is updated during operation if necessary.
messageTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mest - Variable in class gov.nih.mipav.model.algorithms.sproot
META_DATA - Static variable in class gov.nih.mipav.model.file.FileSVS
META_DATA - Static variable in class gov.nih.mipav.model.file.FileTiff
META_DATA_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileSVS: Adobe Tiff Tags
META_DATA_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileTiff: Adobe Tiff Tags
metaarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
metaarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
Metadata() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Metadata
Metadata(String, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
metaDataCounts - Variable in class gov.nih.mipav.model.file.FileSVS
metaDataCounts - Variable in class gov.nih.mipav.model.file.FileTiff
MetadataException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.MetadataException
MetadataException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.MetadataException
MetadataException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.MetadataException
MetadataExtractor - Class in gov.nih.mipav.model.file
MetadataExtractor() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor
MetadataExtractor.AdobeJpegDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string versions of the tags stored in an AdobeJpegDirectory.
MetadataExtractor.AdobeJpegDirectory - Class in gov.nih.mipav.model.file: Contains image encoding information for DCT filters, as stored by Adobe.
MetadataExtractor.AdobeJpegReader - Class in gov.nih.mipav.model.file: Decodes Adobe formatted data stored in JPEG files, normally in the APPE (App14) segment.
MetadataExtractor.Age - Class in gov.nih.mipav.model.file: Represents an age in years, months, days, hours, minutes and seconds.
MetadataExtractor.AppleMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.AppleMakernoteDirectory.
MetadataExtractor.AppleMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Apple cameras.
MetadataExtractor.AppleRunTimeMakernoteDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.AppleRunTimeMakernoteDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.AppleRunTimeReader - Class in gov.nih.mipav.model.file: Reads the AppleRunTime data and adds MetadataExtractor.AppleRunTimeMakernoteDirectory to the parent MetadataExtractor.AppleMakernoteDirectory if it can be parsed with no errors.
MetadataExtractor.BmpHeaderDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.BitmapType - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.ColorEncoding - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.ColorSpaceType - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.Compression - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpHeaderDirectory.RenderingIntent - Class in gov.nih.mipav.model.file
MetadataExtractor.BmpMetadataReader - Class in gov.nih.mipav.model.file: Obtains metadata from BMP files.
MetadataExtractor.BmpReader - Class in gov.nih.mipav.model.file: Reader for Windows and OS/2 bitmap files.
MetadataExtractor.BplistReader - Class in gov.nih.mipav.model.file: A limited-functionality binary property list (BPLIST) utility.
MetadataExtractor.BplistReader.PropertyListResults - Class in gov.nih.mipav.model.file
MetadataExtractor.BplistReader.Trailer - Class in gov.nih.mipav.model.file: A data structure to hold the BPLIST trailer data.
MetadataExtractor.BufferBoundsException - Exception in gov.nih.mipav.model.file: A checked replacement for IndexOutOfBoundsException.
MetadataExtractor.ByteArrayReader - Class in gov.nih.mipav.model.file: Provides methods to read specific values from a byte array, with a consistent, checked exception structure for issues.
MetadataExtractor.ByteConvert - Class in gov.nih.mipav.model.file
MetadataExtractor.ByteTrie<T> - Class in gov.nih.mipav.model.file: Stores values using a prefix tree (aka 'trie', i.e. reTRIEval data structure).
MetadataExtractor.ByteTrie.ByteTrieNode<T> - Class in gov.nih.mipav.model.file: A node in the trie.
MetadataExtractor.ByteUtil - Class in gov.nih.mipav.model.file
MetadataExtractor.CanonMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.CanonMakernoteDirectory.
MetadataExtractor.CanonMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Canon cameras.
MetadataExtractor.CanonMakernoteDirectory.AFInfo - Class in gov.nih.mipav.model.file
MetadataExtractor.CanonMakernoteDirectory.CameraSettings - Class in gov.nih.mipav.model.file
MetadataExtractor.CanonMakernoteDirectory.FocalLength - Class in gov.nih.mipav.model.file
MetadataExtractor.CanonMakernoteDirectory.Panorama - Class in gov.nih.mipav.model.file
MetadataExtractor.CanonMakernoteDirectory.ShotInfo - Class in gov.nih.mipav.model.file
MetadataExtractor.CasioType1MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.CasioType1MakernoteDirectory.
MetadataExtractor.CasioType1MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Casio (type 1) cameras.
MetadataExtractor.CasioType2MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.CasioType2MakernoteDirectory.
MetadataExtractor.CasioType2MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Casio (type 2) cameras.
MetadataExtractor.Charsets - Class in gov.nih.mipav.model.file: Holds a set of commonly used character encodings.
MetadataExtractor.CompoundException - Exception in gov.nih.mipav.model.file: Represents a compound exception, as modelled in JDK 1.4, but unavailable in previous versions.
MetadataExtractor.DateUtil - Class in gov.nih.mipav.model.file
MetadataExtractor.Directory - Class in gov.nih.mipav.model.file: Abstract base class for all directory implementations, having methods for getting and setting tag values of various data types.
MetadataExtractor.DirectoryTiffHandler - Class in gov.nih.mipav.model.file: Adapter between the MetadataExtractor.TiffHandler interface and the MetadataExtractor.Metadata/MetadataExtractor.Directory object model.
MetadataExtractor.DuckyDirectory - Class in gov.nih.mipav.model.file: Holds the data found in Photoshop "ducky" segments, created during Save-for-Web.
MetadataExtractor.DuckyReader - Class in gov.nih.mipav.model.file: Reads Photoshop "ducky" segments, created during Save-for-Web.
MetadataExtractor.ErrorDirectory - Class in gov.nih.mipav.model.file: A directory to use for the reporting of errors.
MetadataExtractor.ExifDescriptorBase<T extends MetadataExtractor.Directory> - Class in gov.nih.mipav.model.file: Base class for several Exif format descriptor classes.
MetadataExtractor.ExifDirectoryBase - Class in gov.nih.mipav.model.file: Base class for several Exif format tag directories.
MetadataExtractor.ExifIFD0Descriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ExifIFD0Directory.
MetadataExtractor.ExifIFD0Directory - Class in gov.nih.mipav.model.file: Describes Exif tags from the IFD0 directory.
MetadataExtractor.ExifImageDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ExifImageDirectory.
MetadataExtractor.ExifImageDirectory - Class in gov.nih.mipav.model.file: Describes One of several Exif directories.
MetadataExtractor.ExifInteropDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ExifInteropDirectory.
MetadataExtractor.ExifInteropDirectory - Class in gov.nih.mipav.model.file: Describes Exif interoperability tags.
MetadataExtractor.ExifReader - Class in gov.nih.mipav.model.file: Decodes Exif binary data, populating a MetadataExtractor.Metadata object with tag values in MetadataExtractor.ExifSubIFDDirectory, MetadataExtractor.ExifThumbnailDirectory, MetadataExtractor.ExifInteropDirectory, MetadataExtractor.GpsDirectory and one of the many camera makernote directories.
MetadataExtractor.ExifSubIFDDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ExifSubIFDDirectory.
MetadataExtractor.ExifSubIFDDirectory - Class in gov.nih.mipav.model.file: Describes Exif tags from the SubIFD directory.
MetadataExtractor.ExifThumbnailDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ExifThumbnailDirectory.
MetadataExtractor.ExifThumbnailDirectory - Class in gov.nih.mipav.model.file: One of several Exif directories.
MetadataExtractor.ExifTiffHandler - Class in gov.nih.mipav.model.file: Implementation of com.drew.imaging.tiff.TiffHandler used for handling TIFF tags according to the Exif standard.
MetadataExtractor.Face - Class in gov.nih.mipav.model.file: Class to hold information about a detected or recognized face in a photo.
MetadataExtractor.FileSystemDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.FileSystemDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.FileSystemMetadataReader - Class in gov.nih.mipav.model.file
MetadataExtractor.FileType - Enum in gov.nih.mipav.model.file: Enumeration of supported file types.
MetadataExtractor.FileUtil - Class in gov.nih.mipav.model.file: A series of utility methods for working with the file system.
MetadataExtractor.FujifilmMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.FujifilmMakernoteDirectory.
MetadataExtractor.FujifilmMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Fujifilm cameras.
MetadataExtractor.GeoLocation - Class in gov.nih.mipav.model.file: Represents a latitude and longitude pair, giving a position on earth in spherical coordinates.
MetadataExtractor.GifAnimationDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.GifAnimationDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.GifCommentDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.GifCommentDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.GifControlDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.GifControlDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.GifControlDirectory.DisposalMethod - Class in gov.nih.mipav.model.file: Disposal method indicates the way in which the graphic is to be treated after being displayed.
MetadataExtractor.GifHeaderDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.GifHeaderDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.GifImageDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.GifImageDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.GifReader - Class in gov.nih.mipav.model.file: Reader of GIF encoded data.
MetadataExtractor.GpsDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.GpsDirectory.
MetadataExtractor.GpsDirectory - Class in gov.nih.mipav.model.file: Describes Exif tags that contain Global Positioning System (GPS) data.
MetadataExtractor.HuffmanTablesDescriptor - Class in gov.nih.mipav.model.file: Provides a human-readable string version of the tag stored in a MetadataExtractor.HuffmanTablesDirectory.
MetadataExtractor.HuffmanTablesDirectory - Class in gov.nih.mipav.model.file: Directory of tables for the DHT (Define Huffman Table(s)) segment.
MetadataExtractor.HuffmanTablesDirectory.HuffmanTable - Class in gov.nih.mipav.model.file: An instance of this class holds a JPEG Huffman table.
MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass - Class in gov.nih.mipav.model.file
MetadataExtractor.IccDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.IccDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.IccReader - Class in gov.nih.mipav.model.file: Reads an ICC profile.
MetadataExtractor.ImageProcessingException - Exception in gov.nih.mipav.model.file: An exception class thrown upon an unexpected condition that was fatal for the processing of an image.
MetadataExtractor.IptcDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.IptcDirectory.
MetadataExtractor.IptcDirectory - Class in gov.nih.mipav.model.file: Describes tags used by the International Press Telecommunications Council (IPTC) metadata format.
MetadataExtractor.IptcReader - Class in gov.nih.mipav.model.file: Decodes IPTC binary data, populating a MetadataExtractor.Metadata object with tag values in an MetadataExtractor.IptcDirectory.
MetadataExtractor.Iso2022Converter - Class in gov.nih.mipav.model.file
MetadataExtractor.Iterables - Class in gov.nih.mipav.model.file
MetadataExtractor.JfifDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string versions of the tags stored in a JfifDirectory.
MetadataExtractor.JfifDirectory - Class in gov.nih.mipav.model.file: Directory of tags and values for the SOF0 Jfif segment.
MetadataExtractor.JfifReader - Class in gov.nih.mipav.model.file: Reader for JFIF data, found in the APP0 JPEG segment.
MetadataExtractor.JfxxDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string versions of the tags stored in a JfxxDirectory.
MetadataExtractor.JfxxDirectory - Class in gov.nih.mipav.model.file: Directory of tags and values for the SOF0 JFXX segment.
MetadataExtractor.JfxxReader - Class in gov.nih.mipav.model.file: Reader for JFXX (JFIF extensions) data, found in the APP0 JPEG segment.
MetadataExtractor.JpegCommentDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.JpegCommentDirectory.
MetadataExtractor.JpegCommentDirectory - Class in gov.nih.mipav.model.file: Describes tags used by a JPEG file comment.
MetadataExtractor.JpegCommentReader - Class in gov.nih.mipav.model.file: Decodes the comment stored within JPEG files, populating a MetadataExtractor.Metadata object with tag values in a MetadataExtractor.JpegCommentDirectory.
MetadataExtractor.JpegComponent - Class in gov.nih.mipav.model.file: Stores information about a JPEG image component such as the component id, horiz/vert sampling factor and quantization table number.
MetadataExtractor.JpegDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string versions of the tags stored in a JpegDirectory.
MetadataExtractor.JpegDhtReader - Class in gov.nih.mipav.model.file: Reader for JPEG Huffman tables, found in the DHT JPEG segment.
MetadataExtractor.JpegDirectory - Class in gov.nih.mipav.model.file: Directory of tags and values for the SOF0 JPEG segment.
MetadataExtractor.JpegDnlReader - Class in gov.nih.mipav.model.file: Decodes JPEG DNL data, adjusting the image height with information missing from the JPEG SOFx segment.
MetadataExtractor.JpegMetadataReader - Class in gov.nih.mipav.model.file: Obtains all available metadata from JPEG formatted files.
MetadataExtractor.JpegProcessingException - Exception in gov.nih.mipav.model.file: An exception class thrown upon unexpected and fatal conditions while processing a JPEG file.
MetadataExtractor.JpegReader - Class in gov.nih.mipav.model.file: Decodes JPEG SOFn data, populating a MetadataExtractor.Metadata object with tag values in a MetadataExtractor.JpegDirectory.
MetadataExtractor.JpegSegmentData - Class in gov.nih.mipav.model.file: Holds a collection of JPEG data segments.
MetadataExtractor.JpegSegmentMetadataReader - Interface in gov.nih.mipav.model.file: Defines an object that extracts metadata from in JPEG segments.
MetadataExtractor.JpegSegmentReader - Class in gov.nih.mipav.model.file: Performs read functions of JPEG files, returning specific file segments.
MetadataExtractor.JpegSegmentType - Enum in gov.nih.mipav.model.file: An enumeration of the known segment types found in JPEG files.
MetadataExtractor.KeyValuePair - Class in gov.nih.mipav.model.file: Models a key/value pair, where both are non-null MetadataExtractor.StringValue objects.
MetadataExtractor.Knot - Class in gov.nih.mipav.model.file: Represents a knot created by Photoshop: Linked knot Unlinked knot
MetadataExtractor.KodakMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.KodakMakernoteDirectory.
MetadataExtractor.KodakMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Kodak cameras.
MetadataExtractor.KyoceraMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.KyoceraMakernoteDirectory.
MetadataExtractor.KyoceraMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Kyocera and Contax cameras.
MetadataExtractor.LeicaMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.LeicaMakernoteDirectory.
MetadataExtractor.LeicaMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to certain Leica cameras.
MetadataExtractor.LeicaType5MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.LeicaType5MakernoteDirectory.
MetadataExtractor.LeicaType5MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to certain Leica cameras.
MetadataExtractor.Metadata - Class in gov.nih.mipav.model.file: A top-level object that holds the metadata values extracted from an image.
MetadataExtractor.MetadataException - Exception in gov.nih.mipav.model.file: Base class for all metadata specific exceptions.
MetadataExtractor.MetadataReader - Interface in gov.nih.mipav.model.file: Defines an object capable of processing a particular type of metadata from a MetadataExtractor.RandomAccessReader.
MetadataExtractor.NikonType1MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.NikonType1MakernoteDirectory.
MetadataExtractor.NikonType1MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Nikon (type 1) cameras.
MetadataExtractor.NikonType2MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.NikonType2MakernoteDirectory.
MetadataExtractor.NikonType2MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Nikon (type 2) cameras.
MetadataExtractor.NotNull - Annotation Type in gov.nih.mipav.model.file
MetadataExtractor.Nullable - Annotation Type in gov.nih.mipav.model.file
MetadataExtractor.NullOutputStream - Class in gov.nih.mipav.model.file: An implementation of OutputSteam that ignores write requests by doing nothing.
MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusCameraSettingsMakernoteDirectory.
MetadataExtractor.OlympusCameraSettingsMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus camera settings makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusEquipmentMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusEquipmentMakernoteDirectory.
MetadataExtractor.OlympusEquipmentMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus equipment makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusFocusInfoMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusFocusInfoMakernoteDirectory.
MetadataExtractor.OlympusFocusInfoMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus focus info makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusImageProcessingMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusImageProcessingMakernoteDirectory.
MetadataExtractor.OlympusImageProcessingMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus image processing makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.OlympusMakernoteDirectory.
MetadataExtractor.OlympusMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusMakernoteDirectory.CameraSettings - Class in gov.nih.mipav.model.file
MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory.
MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus raw development 2 makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory.
MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory - Class in gov.nih.mipav.model.file: The Olympus raw development makernote is used by many manufacturers (Epson, Konica, Minolta and Agfa...), and as such contains some tags that appear specific to those manufacturers.
MetadataExtractor.OlympusRawInfoMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable String representations of tag values stored in a MetadataExtractor.OlympusRawInfoMakernoteDirectory.
MetadataExtractor.OlympusRawInfoMakernoteDirectory - Class in gov.nih.mipav.model.file: These tags are found only in ORF images of some models (eg.
MetadataExtractor.PanasonicMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PanasonicMakernoteDirectory.
MetadataExtractor.PanasonicMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Panasonic and Leica cameras.
MetadataExtractor.PanasonicRawDistortionDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PanasonicRawDistortionDirectory.
MetadataExtractor.PanasonicRawDistortionDirectory - Class in gov.nih.mipav.model.file: These tags can be found in Panasonic/Leica RAW, RW2 and RWL images.
MetadataExtractor.PanasonicRawIFD0Descriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PanasonicRawIFD0Directory.
MetadataExtractor.PanasonicRawIFD0Directory - Class in gov.nih.mipav.model.file: These tags are found in IFD0 of Panasonic/Leica RAW, RW2 and RWL images.
MetadataExtractor.PanasonicRawWbInfo2Descriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PanasonicRawWbInfo2Directory.
MetadataExtractor.PanasonicRawWbInfo2Directory - Class in gov.nih.mipav.model.file: These tags can be found in Panasonic/Leica RAW, RW2 and RWL images.
MetadataExtractor.PanasonicRawWbInfoDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PanasonicRawWbInfoDirectory.
MetadataExtractor.PanasonicRawWbInfoDirectory - Class in gov.nih.mipav.model.file: These tags can be found in Panasonic/Leica RAW, RW2 and RWL images.
MetadataExtractor.PentaxMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PentaxMakernoteDirectory.
MetadataExtractor.PentaxMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Pentax and Asahi cameras.
MetadataExtractor.PhotographicConversions - Class in gov.nih.mipav.model.file: Contains helper methods that perform photographic conversions.
MetadataExtractor.PhotoshopDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.PhotoshopDirectory - Class in gov.nih.mipav.model.file: Holds the metadata found in the APPD segment of a JPEG file saved by Photoshop.
MetadataExtractor.PhotoshopReader - Class in gov.nih.mipav.model.file: Reads metadata created by Photoshop and stored in the APPD segment of JPEG files.
MetadataExtractor.PngChromaticities - Class in gov.nih.mipav.model.file
MetadataExtractor.PngChromaticitiesDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.PngChunk - Class in gov.nih.mipav.model.file
MetadataExtractor.PngChunkReader - Class in gov.nih.mipav.model.file
MetadataExtractor.PngChunkType - Class in gov.nih.mipav.model.file
MetadataExtractor.PngColorType - Class in gov.nih.mipav.model.file
MetadataExtractor.PngDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.PngDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.PngHeader - Class in gov.nih.mipav.model.file
MetadataExtractor.PngMetadataReader - Class in gov.nih.mipav.model.file
MetadataExtractor.PngProcessingException - Exception in gov.nih.mipav.model.file: An exception class thrown upon unexpected and fatal conditions while processing a JPEG file.
MetadataExtractor.PrintIMDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.PrintIMDirectory.
MetadataExtractor.PrintIMDirectory - Class in gov.nih.mipav.model.file: These tags can be found in Epson proprietary metadata.
MetadataExtractor.PsdHeaderDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.PsdHeaderDirectory - Class in gov.nih.mipav.model.file: Holds the basic metadata found in the header of a Photoshop PSD file.
MetadataExtractor.PsdReader - Class in gov.nih.mipav.model.file: Reads metadata stored within PSD file format data.
MetadataExtractor.RandomAccessFileReader - Class in gov.nih.mipav.model.file: Provides methods to read specific values from a RandomAccessFile, with a consistent, checked exception structure for issues.
MetadataExtractor.RandomAccessReader - Class in gov.nih.mipav.model.file: Base class for random access data reading operations of common data types.
MetadataExtractor.RandomAccessStreamReader - Class in gov.nih.mipav.model.file
MetadataExtractor.Rational - Class in gov.nih.mipav.model.file: Immutable class for holding a rational number without loss of precision.
MetadataExtractor.ReconyxHyperFire2MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ReconyxHyperFire2MakernoteDirectory.
MetadataExtractor.ReconyxHyperFire2MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Reconyx HyperFire 2 cameras.
MetadataExtractor.ReconyxHyperFireMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ReconyxHyperFireMakernoteDirectory.
MetadataExtractor.ReconyxHyperFireMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Reconyx HyperFire cameras.
MetadataExtractor.ReconyxUltraFireMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.ReconyxUltraFireMakernoteDirectory.
MetadataExtractor.ReconyxUltraFireMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Reconyx UltraFire cameras.
MetadataExtractor.RicohMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.RicohMakernoteDirectory.
MetadataExtractor.RicohMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Ricoh cameras.
MetadataExtractor.SamsungType2MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.SamsungType2MakernoteDirectory.
MetadataExtractor.SamsungType2MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific certain 'newer' Samsung cameras.
MetadataExtractor.SanyoMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a com.drew.metadata.exif.makernotes.SonyType6MakernoteDirectory.
MetadataExtractor.SanyoMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Sanyo cameras.
MetadataExtractor.SequentialByteArrayReader - Class in gov.nih.mipav.model.file
MetadataExtractor.SequentialReader - Class in gov.nih.mipav.model.file
MetadataExtractor.SigmaMakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.SigmaMakernoteDirectory.
MetadataExtractor.SigmaMakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Sigma / Foveon cameras.
MetadataExtractor.SonyEncodedDataDirectoryBase - Class in gov.nih.mipav.model.file
MetadataExtractor.SonyTag9050bDescriptor - Class in gov.nih.mipav.model.file
MetadataExtractor.SonyTag9050bDirectory - Class in gov.nih.mipav.model.file
MetadataExtractor.SonyType1MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.SonyType1MakernoteDirectory.
MetadataExtractor.SonyType1MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Sony cameras that use the Sony Type 1 makernote tags.
MetadataExtractor.SonyType6MakernoteDescriptor - Class in gov.nih.mipav.model.file: Provides human-readable string representations of tag values stored in a MetadataExtractor.SonyType6MakernoteDirectory.
MetadataExtractor.SonyType6MakernoteDirectory - Class in gov.nih.mipav.model.file: Describes tags specific to Sony cameras that use the Sony Type 6 makernote tags.
MetadataExtractor.StreamReader - Class in gov.nih.mipav.model.file
MetadataExtractor.StreamUtil - Class in gov.nih.mipav.model.file
MetadataExtractor.StringUtil - Class in gov.nih.mipav.model.file
MetadataExtractor.StringValue - Class in gov.nih.mipav.model.file
MetadataExtractor.Subpath - Class in gov.nih.mipav.model.file: Represents a subpath created by Photoshop: Closed Bezier knot, linked Closed Bezier knot, unlinked Open Bezier knot, linked Open Bezier knot, unlinked
MetadataExtractor.SuppressWarnings - Annotation Type in gov.nih.mipav.model.file: Used to suppress specific code analysis warnings produced by the Findbugs tool.
MetadataExtractor.Tag - Class in gov.nih.mipav.model.file: Models a particular tag within a com.drew.metadata.Directory and provides methods for obtaining its value.
MetadataExtractor.TagDescriptor<T extends MetadataExtractor.Directory> - Class in gov.nih.mipav.model.file: Base class for all tag descriptor classes.
MetadataExtractor.TiffDataFormat - Class in gov.nih.mipav.model.file: An enumeration of data formats used by the TIFF specification.
MetadataExtractor.TiffHandler - Interface in gov.nih.mipav.model.file: Interface of an class capable of handling events raised during the reading of a TIFF file via MetadataExtractor.TiffReader.
MetadataExtractor.TiffProcessingException - Exception in gov.nih.mipav.model.file: An exception class thrown upon unexpected and fatal conditions while processing a TIFF file.
MetadataExtractor.TiffReader - Class in gov.nih.mipav.model.file: Processes TIFF-formatted data, calling into client code via that MetadataExtractor.TiffHandler interface.
MetadataExtractorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest
MetadataExtractorTest.AdobeJpegReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.AgeTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.BmpReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.ByteArrayReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.ByteConvertTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.ByteTrieTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.ByteUtilTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.CanonMakernoteDescriptorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.CompoundExceptionTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.DirectoryTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.ExifDirectoryTest - Class in gov.nih.mipav.model.file: Unit tests for MetadataExtractor.ExifSubIFDDirectory, MetadataExtractor.ExifIFD0Directory, MetadataExtractor.ExifThumbnailDirectory and MetadataExtractor.GpsDirectory.
MetadataExtractorTest.ExifIFD0DescriptorTest - Class in gov.nih.mipav.model.file: Unit tests for MetadataExtractor.ExifIFD0Descriptor.
MetadataExtractorTest.ExifInteropDescriptorTest - Class in gov.nih.mipav.model.file: Unit tests for MetadataExtractor.ExifInteropDescriptor.
MetadataExtractorTest.ExifReaderTest - Class in gov.nih.mipav.model.file: JUnit test case for class ExifReader.
MetadataExtractorTest.ExifSubIFDDescriptorTest - Class in gov.nih.mipav.model.file: JUnit test case for class ExifSubIFDDescriptor.
MetadataExtractorTest.ExifThumbnailDescriptorTest - Class in gov.nih.mipav.model.file: JUnit test case for class ExifThumbnailDescriptor.
MetadataExtractorTest.FileTypeTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.GeoLocationTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.GifReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.HuffmanTablesDescriptorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.HuffmanTablesDirectoryTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.IccReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.IptcDirectoryTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.IptcReaderTest - Class in gov.nih.mipav.model.file: Unit tests for MetadataExtractor.IptcReader.
MetadataExtractorTest.Iso2022ConverterTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JfifReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegComponentTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegDescriptorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegDhtReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegDirectoryTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegMetadataReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegSegmentDataTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.JpegSegmentReaderTest - Class in gov.nih.mipav.model.file: Unit tests for MetadataExtractor.JpegSegmentReader.
MetadataExtractorTest.MetadataTest - Class in gov.nih.mipav.model.file: JUnit test case for class Metadata.
MetadataExtractorTest.MockDirectory - Class in gov.nih.mipav.model.file: A mock implementation of Directory used in unit testing.
MetadataExtractorTest.NikonType1MakernoteTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.NikonType2MakernoteTest1 - Class in gov.nih.mipav.model.file
MetadataExtractorTest.NikonType2MakernoteTest2 - Class in gov.nih.mipav.model.file
MetadataExtractorTest.NullOutputStreamTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PanasonicMakernoteDescriptorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PngChunkReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PngChunkTypeTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PngDescriptorTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PngMetadataReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.PsdReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.RandomAccessFileReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.RandomAccessStreamReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.RandomAccessTestBase - Class in gov.nih.mipav.model.file: Base class for testing implementations of MetadataExtractor.RandomAccessReader.
MetadataExtractorTest.RationalTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.SequentialAccessTestBase - Class in gov.nih.mipav.model.file: Base class for testing implementations of com.drew.lang.SequentialReader.
MetadataExtractorTest.SequentialByteArrayReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.SonyType1MakernoteTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.SonyType6MakernoteTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.StreamReaderTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.StringUtilTest - Class in gov.nih.mipav.model.file
MetadataExtractorTest.TestHelper - Class in gov.nih.mipav.model.file
MetaDataStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
MetadataTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest
metaGroupLength - Variable in class gov.nih.mipav.model.file.FileDicom: Number of bytes following this File Meta Element (end of the Value field) up to and including the last File Meta Element of the Group 2 File Meta Information.
METAIMAGE - Static variable in class gov.nih.mipav.model.file.FileUtility: Metaimage files are either separate .mhd header and .raw image data files or combined .mha header and image data file
meteringMode - Variable in class gov.nih.mipav.model.file.FileSVS
meteringMode - Variable in class gov.nih.mipav.model.file.FileTiff
METERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement meters.
METERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement meters.
METERS_PER_SEC - gov.nih.mipav.model.file.FileInfoBase.Unit: Meters per second
METERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - meters.
method - Variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
method - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
method - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
method - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Method used in calculating the confluent hypergeometric function of the second kind.
method - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < Cornerness scale space.
method - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: 1 of 4 possible sets of routines to be executed
method - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
method - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution
method - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
method - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
method - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
method - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
method - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
method - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
method - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
method - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution
method - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
method - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
methodBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
methodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
methodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
methodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
methodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
methodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
methodPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
MethodPar() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: get numerical gradient function
methods - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
METIS - Class in gov.nih.mipav.model.structures.jama
METIS() - Constructor for class gov.nih.mipav.model.structures.jama.METIS
METIS_AT_PLUS_A - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
METIS_ATA - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
METIS_CTYPE_RM - gov.nih.mipav.model.structures.jama.METIS.mctype_et
METIS_CTYPE_SHEM - gov.nih.mipav.model.structures.jama.METIS.mctype_et
METIS_DBG_COARSEN - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_CONNINFO - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_CONTIGINFO - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_INFO - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_IPART - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_MEMORY - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_MOVEINFO - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_REFINE - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_SEPINFO - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_DBG_TIME - gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et
METIS_ERROR - gov.nih.mipav.model.structures.jama.METIS.rstatus_et
METIS_ERROR_INPUT - gov.nih.mipav.model.structures.jama.METIS.rstatus_et
METIS_ERROR_MEMORY - gov.nih.mipav.model.structures.jama.METIS.rstatus_et
METIS_IPTYPE_EDGE - gov.nih.mipav.model.structures.jama.METIS.miptype_et
METIS_IPTYPE_GROW - gov.nih.mipav.model.structures.jama.METIS.miptype_et
METIS_IPTYPE_METISRB - gov.nih.mipav.model.structures.jama.METIS.miptype_et
METIS_IPTYPE_NODE - gov.nih.mipav.model.structures.jama.METIS.miptype_et
METIS_IPTYPE_RANDOM - gov.nih.mipav.model.structures.jama.METIS.miptype_et
METIS_NodeND(int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
METIS_OBJTYPE_CUT - gov.nih.mipav.model.structures.jama.METIS.mobjtype_et
METIS_OBJTYPE_NODE - gov.nih.mipav.model.structures.jama.METIS.mobjtype_et
METIS_OBJTYPE_VOL - gov.nih.mipav.model.structures.jama.METIS.mobjtype_et
METIS_OK - gov.nih.mipav.model.structures.jama.METIS.rstatus_et
METIS_OP_KMETIS - gov.nih.mipav.model.structures.jama.METIS.moptype_et
METIS_OP_OMETIS - gov.nih.mipav.model.structures.jama.METIS.moptype_et
METIS_OP_PMETIS - gov.nih.mipav.model.structures.jama.METIS.moptype_et
METIS_OPTION_BALANCE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_CCORDER - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_COMPRESS - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_CONTIG - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_CTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_DBGLVL - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_GTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_HELP - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_IPTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_MINCONN - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NCOMMON - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NCUTS - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NITER - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NO2HOP - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NOOUTPUT - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NSEPS - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_NUMBERING - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_OBJTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_PFACTOR - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_PTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_RTYPE - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_SEED - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_TPWGTS - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_UBVEC - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_OPTION_UFACTOR - gov.nih.mipav.model.structures.jama.METIS.moptions_et
METIS_RTYPE_FM - gov.nih.mipav.model.structures.jama.METIS.mrtype_et
METIS_RTYPE_GREEDY - gov.nih.mipav.model.structures.jama.METIS.mrtype_et
METIS_RTYPE_SEP1SIDED - gov.nih.mipav.model.structures.jama.METIS.mrtype_et
METIS_RTYPE_SEP2SIDED - gov.nih.mipav.model.structures.jama.METIS.mrtype_et
METIS.ckrinfo_t - Class in gov.nih.mipav.model.structures.jama
METIS.cnbr_t - Class in gov.nih.mipav.model.structures.jama
METIS.ctrl_t - Class in gov.nih.mipav.model.structures.jama
METIS.gk_mcore_t - Class in gov.nih.mipav.model.structures.jama
METIS.gk_mop_t - Class in gov.nih.mipav.model.structures.jama
METIS.graph_t - Class in gov.nih.mipav.model.structures.jama
METIS.ikv_t - Class in gov.nih.mipav.model.structures.jama
METIS.mctype_et - Enum in gov.nih.mipav.model.structures.jama
METIS.mdbglvl_et - Enum in gov.nih.mipav.model.structures.jama
METIS.miptype_et - Enum in gov.nih.mipav.model.structures.jama
METIS.mobjtype_et - Enum in gov.nih.mipav.model.structures.jama
METIS.moptions_et - Enum in gov.nih.mipav.model.structures.jama
METIS.moptype_et - Enum in gov.nih.mipav.model.structures.jama
METIS.mrtype_et - Enum in gov.nih.mipav.model.structures.jama
METIS.nrinfo_t - Class in gov.nih.mipav.model.structures.jama
METIS.rstatus_et - Enum in gov.nih.mipav.model.structures.jama
METIS.vkrinfo_t - Class in gov.nih.mipav.model.structures.jama
METIS.vnbr_t - Class in gov.nih.mipav.model.structures.jama
metric - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
metric_param - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
metric_type - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
metric_type - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
metrics - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
mexh(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
MEXH - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
MEYER - Variable in class gov.nih.mipav.model.algorithms.Lmmin
MEYER - Variable in class gov.nih.mipav.model.algorithms.LsqFit
MEYER - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
MEYER - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
MeyerFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.MeyerFunction
mfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
mFullPath - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: The full path to the surface file.
mgetv0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
MGH - Static variable in class gov.nih.mipav.model.file.FileUtility: MGH/MGZ volume format.
mghType - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
mGMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
mgp - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
mHistogram - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Display the independent LUT for Black/White images.
mHistogram - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Display the independent LUT for Black/White images.
mi - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
mi - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
mi(double[][]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
MI(int[], int[], int[][], int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
MI_DBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
MI_ZBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
miCOMPRESSED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Compressed Data
miCOMPRESSED - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Compressed Data
MICRO_CAT - Static variable in class gov.nih.mipav.model.file.FileUtility: Micro CT format for small animal imaging. extension: .log, .ct
microfocusPosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
MICROMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement micrometers.
MICROMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement micrometers.
MICROMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - micrometers.
microscope - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
microscope - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: Elements.
Microscope(String, String, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Microscope: Creates a new Microscope object.
microscopeIllumination - Variable in class gov.nih.mipav.model.file.FileInfoZVI
microscopeMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
microscopeName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
microscopePort - Variable in class gov.nih.mipav.model.file.FileInfoZVI
microscopeSystem - Variable in class gov.nih.mipav.model.file.FileInfoCZI
microscopeType - Variable in class gov.nih.mipav.model.file.FileInfoCZI
microscopeType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
MICROSCOPY - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Microscopy files (*.avi; *.ics; *.liff; *.lsm; *.pic; *.stk; *.tif; *.tiff; *.xml).
MICROSEC - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement microseconds.
MICROSEC - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement microseconds.
MICROSEC_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - microseconds.
microSecPerFrame - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
microSecPerFrame - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
mid - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
MID_PHASE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
MID_PHASE - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
midButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
middleDownButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
middleDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middle panel down button.
middleDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
middleLabelValueA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
middleLabelValueA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
middleLabelValueB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
middleLabelValueB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
middleLabelValueGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
middleLabelValueGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
middleLabelValueGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
middleLabelValueGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
middleLeftButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
middleLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middel panel left button.
middleLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
middleLeftButtonEmpty - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Empty button group.
middleLeftButtonEmpty - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middle panel empty button.
middleName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
middleRightButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
middleRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middle panel right button.
middleRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
middleRightButtonEmpty - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middle panel right button empty.
middleUpButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
middleUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Middel panel up button.
middleUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
midGray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
MidLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Transfer function mid-line:
miDOUBLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: IEEE 754 double format
miDOUBLE - Static variable in class gov.nih.mipav.model.file.FileMATLAB: IEEE 754 double format
midPad - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.fftPadding
midpointLine(Vector3f, Vector3f, Vector<Point3D>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
midpointLine(Vector3f, Vector3f, Vector<Point3D>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
midPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
midPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
midPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
midPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
midPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
MIDPT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
midsagMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem: Matrix with the best transformation's z rot and xy translations.
midsagMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem: Matrix with the best transformation's z rot and xy translations.
midsagMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix with the best transformation's z rot and xy translations.
midsagMatrixd - Variable in class gov.nih.mipav.model.algorithms.registration.MatrixListItem: Matrix with the best transformation's z rot and xy translations.
MidToBegin - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
MidToEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
midVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
midVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
midVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
midVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
midVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
midVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
midwt() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
miINT16 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 16-bit, signed
miINT16 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 16-bit, signed
miINT32 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 32-bit signed
miINT32 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 32-bit signed
miINT64 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 64-bit, signed
miINT64 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 64-bit, signed
miINT8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 8 bit, signed
miINT8 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 8 bit, signed
MILES - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement miles.
MILES - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement miles.
MILES_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - miles.
MILLIMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement millimeters.
MILLIMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement millimeters.
MILLIMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - millimeters.
MILLISEC - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement milliseconds.
MILLISEC - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement milliseconds.
MILLISEC_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - milliseconds.
MILS - gov.nih.mipav.model.file.FileInfoBase.Unit: Units of measurement mil (thousandth of an inch)
MILS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Units of measurement mil (thousandth of an inch)
MILS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - mils.
MILU_ALPHA - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
milu_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.milu_t
mImageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: ModelImage used to generate the 3D texture:.
mImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: ModelImage used to generate the 3D texture:.
mImageALink - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Reference to ModelImage A for linking the texture to the imageA LUT.
mImageALink - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Reference to ModelImage A for linking the texture to the imageA LUT.
mImageAsTextureCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: RadioButton for turing on the surface image texture:.
mImageAsTextureRadioButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: RadioButton for turing on the surface image texture:.
mImageAsVertexColorRadioButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: RadioButton for turing on the surface image per-vertex color:.
mImageButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Grouping the radio buttons:.
mImageDirName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Stores the currently-loaded ModelImage directory name:.
mImageDirName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Stores the currently-loaded ModelImage directory name:.
mImageFileName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Stores the currently-loaded ModelImage file name:.
mImageFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Stores the currently-loaded ModelImage file name:.
mImageFileNameLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Display the currently-loaded ModelImage file name:.
mImageFileNameLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Display the currently-loaded ModelImage file name:.
mImageNoneRadioButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: RadioButton for turing off the surface image:.
miMATRIX - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: MATLAB ARRAY
miMATRIX - Static variable in class gov.nih.mipav.model.file.FileMATLAB: MATLAB ARRAY
mimeType - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: maximum, minimum size of objects.
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: maximum, minimum size of objects.
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: maximum, minimum size of objects.
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: maximum, minimum size of objects.
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Used to store the image minimum.
min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
min - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdhyperrect
min - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Used to store the image minimum.
min - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Storage or min and max values.
min - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image minimum intensity for single channel image.
min - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Minimum intensity values of image.
min - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum image intensity.
min - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: or if the source image is to be replaced.
min - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel
min - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
min - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: DOCUMENT ME!
min - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
min - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.Linking
min(double[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the minimum value found in a double array.
min(float[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Finds minimum sum under mask.
min(float[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the minimum value found in a float array.
min(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
min(short[]) - Static method in class gov.nih.mipav.util.MipavMath: Returns the minimum value found in a short array.
min(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
Min - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage
Min() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Finds the minimum element in the vector.
Min(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Finds the minimum element in the vector and its position.
min_2P - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Value representing 2% of the histogram count:
MIN_ALLOWED_DEVIATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
MIN_ALLOWED_DEVIATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
min_area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
min_area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
min_area - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
min_col_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
min_col_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
min_constr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
min_constr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
min_constr - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
min_constr - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
min_DCT_h_scaled_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
min_DCT_v_scaled_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
MIN_DELTA - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution: Reference: Hamza Cherkaoui, Thomas Moreau, Abderrahim Halimi, Philippe Ciuciu.
min_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
min_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
min_diversity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
min_diversity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
min_diversity - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
min_edge - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
MIN_GET_BITS - Static variable in class gov.nih.mipav.model.file.libjpeg
MIN_HEAP_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
MIN_INC_MULT - Variable in class gov.nih.mipav.model.algorithms.CVODES
min_inner_iter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
MIN_ITR - Static variable in class gov.nih.mipav.model.algorithms.NLFittedFunction: Min number of iterations to perform.
min_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
min_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
min_line_search_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_line_search_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
min_line_search_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
min_line_search_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_linear_solver_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_lm_diagonal - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_lm_diagonal - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions
MIN_MAGNIFICATION - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: default magnification of images in the light-box.
MIN_MAGNIFICATION - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox: Minimum amount of magnification in the light-box.
min_mem_coalesce_width - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
min_mu_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
min_node_size - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
min_node_size - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
min_node_size - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
min_num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
MIN_RADIUS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: May no longer be necessary.
min_reciprocal_condition_number - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
min_relative_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
min_relative_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
min_row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
MIN_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
MIN_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
MIN_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
MIN_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
min_similarity - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.SingleLinkageClusteringOptions
min_step_contraction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
min_step_quality - Variable in class gov.nih.mipav.model.algorithms.LsqFit
min_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions
min_trust_region_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
min_trust_region_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
min_views - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions
min1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
min1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
min1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
min1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Minimum and maximum buffer and secondBuffer areas.
min1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Minimum and maximum buffer and secondBuffer areas.
min2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
min2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
min2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
min2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Minimum and maximum buffer and secondBuffer areas.
min2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Minimum and maximum buffer and secondBuffer areas.
min2DPt(int, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: A function that finds the minimum value in a local image rectangle.
min3(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Returns the minimum of 3 values
min3DPt(int, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: A function that finds the minimum value in a local image volume.
minA - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
minA - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
minAB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minAdjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minAdjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minAdjustExpLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minAdjustExpLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minAG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minAllowableMajorTickSpacing - Variable in class gov.nih.mipav.view.ViewJSlider
minAllowableMinorTickSpacing - Variable in class gov.nih.mipav.view.ViewJSlider: The closest number of pixels that major/minor ticks may be next to each other.
minAnisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minAnisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minAnisotropyMaxLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minAnisotropyMaxLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minAnisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minAnisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minAnisotropyMinLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minAnisotropyMinLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minAR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minarea - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
minB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
minB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
minB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
minB - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image minimum intensity for the blue channel of an RGB image.
minB - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Minimum intensity values of image.
minB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Min. intensity values in Red, Green and Blue images respectively
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
minBB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minBG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minBR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
minButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: refs to the magnify and minimize button
minBV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minC - Variable in class gov.nih.mipav.model.file.FileZVI
MINC - Static variable in class gov.nih.mipav.model.file.FileUtility: MINC file type.
MINC_HDF - Static variable in class gov.nih.mipav.model.file.FileUtility: MINC 2.0 (HDF5)
MINC_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type MINC.
minc1File - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Radio button to indicate that an Minc1 CDF mnc file should be written out.
minc2File - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Radio button to indicate that a Minc2 HDF5 mnc file should be written out.
mincEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
minCheckBox - Variable in class gov.nih.mipav.view.JPanelEditTime: permits whether or not to set this field.
mincInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: DOCUMENT ME!
mincInfo - Variable in class gov.nih.mipav.view.JPanelAnonymizeImage: DOCUMENT ME!
mincode - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: mincode[index] = minimum legal code at that index.
MINCODE - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
MINCODE - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
minColorRange - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minColorRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minColorRangeLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minColorRangeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minComboBox - Variable in class gov.nih.mipav.view.JPanelEditTime: value to add to this time field.
minconn - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
minCoverage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
minCoverage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Minimum percentage of the perimiter of a found ellipse that must be covered by points for it to be valid.
minCoverageText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
mincStartLoc - Variable in class gov.nih.mipav.model.file.FileMincHDF
mincut - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
minDAT - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 256 minimum delay after trigger (usec).
mindIdent - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
mindIdentArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
MINDIFF - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Indicates that the minimum difference cost function should be used (MAXSUM is perferred).
MINDIFF - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
minDim() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
minDimGreen - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minDimGreen - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minDimGreenLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minDimGreenLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minDist - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
minDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
minDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
minDomain - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
minDomainField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
minDomainLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
minError - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
minErrorTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
minExponent - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
minField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: DOCUMENT ME!
minField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
minFunctionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D
minFunctionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
minFunctionAtBest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
minG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
minG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
minG - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image minimum intensity for the green channel of an RGB image.
minG - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Minimum intensity values of image.
minG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Min. intensity values in Red, Green and Blue images respectively
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
minGamma - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minGamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minGammaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minGammaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minGV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Image's minimum intensity.
minImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Image's minimum intensity.
minimax_test(VOIBaseVector, VOIBaseVector, GenericPolygonClipper.gpc_op) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
Minimize(CeresSolver.MinimizerOptions, double[], CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
Minimize(CeresSolver.MinimizerOptions, double[], CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer
Minimize(CeresSolver.MinimizerOptions, double[], CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
Minimize(CeresSolver.MinimizerOptions, Vector<Double>, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
Minimize(CeresSolver.PreprocessedProblem, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: the Minimize function using analytic gradient
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Algorithm D6.1.1 (look at page 274-275 for code) Input: start point for x Output in x: x* - optimal point
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: the Minimize function using Conjugate Gradient
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: Minimization using pattern search.
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: minimization using steepest annealing.
Minimize(CDVector, CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: Steepest decent minimization.
minimizeControlPoint(int, int, int, float) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Move the specified control point using a gradient descent approach to minimize the error.
minimizeControlPoint(int, int, int, int, float) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Move the specified control point using a gradient descent approach to minimize the error.
MinimizeInterpolatingPolynomial(Vector<CeresSolver.FunctionSample>, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
MinimizeNum(CDVector, CDOptimizeFuncBase, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
MinimizePolynomial(Vector<Double>, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
Minimizer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Minimizer
Minimizer(CeresSolver.SolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Minimizer
minimizer_options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
minimizer_progress_to_stdout - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
minimizer_progress_to_stdout - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
minimizer_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
minimizer_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LoggingCallback
minimizer_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
minimizer_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
MinimizerInitializationCopiesCallbacks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
MinimizerOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
MinimizerOptions(CeresSolver.SolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
MinimizerType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.MinimizerType
MinimizerUserAbortUpdatesSummaryMessage() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
MinimizerUserSuccessUpdatesSummaryMessage() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
minimum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: original image minimum.
minimum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
minimum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
minimum - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
minimum - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
minimum - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: When true, calculate the minimum (X,Y,Z) slices.
minimum - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
MINIMUM - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: minimum
MINIMUM - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
minimum_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
minimum_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
MINIMUM_HEIGHT - Static variable in class gov.nih.mipav.view.ViewJFrameGraph: Minimum height of the graph panel
minimum_num_resolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
MINIMUM_PHASE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
MINIMUM_PHASE - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Use serialVersionUID for interoperability.
MINIMUM_SIZE - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
MINIMUM_WIDTH - Static variable in class gov.nih.mipav.view.ViewJFrameGraph: Minimum width of the graph panel
minimumB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
minimumBitsMinus1 - Variable in class gov.nih.mipav.model.file.FileRaw: Used in reading and writing boolean
minimumBitsMinus1 - Variable in class gov.nih.mipav.model.file.FileRawChunk: Used in reading and writing boolean
minimumButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
minimumCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: CheckBox turns on/off calculating the minimum projection.
minimumDelay - Variable in class gov.nih.mipav.model.file.FileGESigna4X
minimumDelay - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
minimumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
minimumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
minimumDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
minimumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
minimumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
minimumDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
minimumFuzzy - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
minimumHeight - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
minimumHeight - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
minimumHeight - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
minimumHeight - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
minimumL - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Labels to display max/min slider values.
minimumLayoutSize(Container) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
minimumLB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumLevel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
minimumLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
minimumLG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumLR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumMSELabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
minimumNearestNeighborDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
minimumPerimeterPolygonButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
minimumR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
minimumRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
minimumRRInterval - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
minimumRRInterval - Variable in class gov.nih.mipav.model.file.FilePARREC
minimumRRIntervalIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
minimumRRIntervalPos - Variable in class gov.nih.mipav.model.file.FilePARREC
minimumSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Smallest kernel size used in adaptive filtering
minimumSplitSize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
minimumSplitSize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
minimumText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
minimumThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
minimumToolBarWidth - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
minimumToolBarWidth - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
minimumToolBarWidth - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
minimumToolBarWidth - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
minimumToolBarWidth - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
minimumU - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumUB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumUG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumUR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minimumValueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Buttons to set max/min slider values.
minimumValueField - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Text fields for user to enter max/min slider values.
minimumx - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
minimumZForSub - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
minInput - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for minimum value of threshold.
minInputB - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for minimum Blue value of threshold.
minInputG - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for minimum Green value of threshold.
minInputR - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: JTextfield for minimum Red value of threshold.
minIntenBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
minIntenGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
minIntenRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
minIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: min intensities for threshold
minIntensity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
minIntensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
minIntensity - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
minIntensity - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Minimum intensity threshold value.
minIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
minIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Minimum intensity threshold.
minIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: min intensities calculatd using std dev
minIntensity - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The minimum value which can be chosen in the intensity spinner.
minIntensityB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: min intensities for threshold
minIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Minimum Blue intensity threshold.
minIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: min intensities calculatd using std dev
minIntensityG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: min intensities for threshold
minIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Minimum Green intensity threshold.
minIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: min intensities calculatd using std dev
minIntensityR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: min intensities for threshold
minIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Minimum Red intensity threshold.
minIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: min intensities calculatd using std dev
minLabel - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.Renum
minLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
minLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
minLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
minLens - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
MINLOG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
minMax() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase.JPanelGPU
MinMax - gov.nih.mipav.view.Preferences.DefaultDisplay: Minimum and maximum settings
minMaxBInt - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: b intercept for mapping of min/max sliders *
minMaxCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
minMaxCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
minMaxCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
minMaxLoc(double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
minMaxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
minMaxSlope - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: slope for mapping of min/max sliders *
MinNonZeroGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
minOfStdVector(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.libdt
MinorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
minorAxisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
minorTickMarksCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
MinParameterBlock(CeresSolver.ResidualBlock, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
minPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
minPixels - Variable in class gov.nih.mipav.model.algorithms.MotionDetection
minPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Minimum number of points found on a hyperbola for it to be valid.
minPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
minPixelsText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
minPointDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
minPointDistance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
minPointDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Smallest allowable distance between 2 of 3 picked points
minPointDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Smallest allowable distance between 2 of 3 picked points
minPointText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
minPointText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
minPosition - Variable in class gov.nih.mipav.model.file.FileZVI
minProgressValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Used to store the minimum value of the progress bar.
minprop - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
minprop - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
minprop - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
minR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
minR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
minR - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image minimum intensity for the red channel of an RGB image.
minR - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Minimum intensity values of image.
minR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum for a color image.
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Min. intensity values in Red, Green and Blue images respectively
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
minR1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
minR1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
minR2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
minR2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
minRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
minRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
minRange - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
minRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect
minRange - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
minRange - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
minRangeField - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
minRangeLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
minRegion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
minRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
minRegionText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
minResultImageSlicesLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minResultImageSlicesLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minrm(double[], double, double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
minrm(DoubleDouble[], DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
minrm1(double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
minrm1(DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
minrm2() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
minrm2() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
minrn(double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
minrn(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
minRV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minRz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
mins - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Minimum and maximum values for red/gree/blue.
mins - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Minimum and maximum values for red/gree/blue.
minSatBlue - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minSatBlue - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minSatBlueLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minSatBlueLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minSatVsTheta - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minSatVsTheta - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minSatVsThetaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minSatVsThetaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation
minSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
minSize - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: DOCUMENT ME!
minSlicePreview - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Single slice preview images
minSliceWindow - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Windows containing preview images
minSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: DOCUMENT ME!
minStevensBeta - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mins and maxes for heuristic parameters*
minStevensBeta - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mins and maxes for heuristic parameters*
minStevensBetaLabel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
minStevensBetaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
minSum - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
minT - Variable in class gov.nih.mipav.model.file.FileZVI
minter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
minText - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Min, max text fields.
minText - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Min, max text fields.
minText - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Min, max text fields.
minThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
minThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
minThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
minThresholdValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
minThresholdValueL - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
minThresholdValueRGB - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
minTimeValue - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
minTransTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
minTransTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
minTransTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
MinTrustRegionRadiusReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
minTx - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
minTy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
minUntwistDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
minUntwistPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
minus(libdt.Mat, double) - Method in class gov.nih.mipav.model.algorithms.libdt
minus(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
minute - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
minuteButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
MINUTES - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement minutes.
MINUTES - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement minutes.
MINUTES_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - minutes.
minV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
minVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
minVal - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Used during saturation (0 if unsigned, -2^(bitdepth-1) if signed)
minVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
minVal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
minValsD - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
minValTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: textfield inputs for window and level *
minValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: min over local kernel, slice, or entire image.
minValue - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
minValue - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minValue - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
minValueB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minValueG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minValueR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
minvar - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchOptions: < normalization method.
minvarf - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchOptions: < minimum variance.
minvol - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
minvol_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
MINVOL_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
minwavelength - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
minwavelength - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
minWaveLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
minx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
minX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MinX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Find the maximum x component of the shape.
MinX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Find the minimum x component of all shapes.
miny - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
minY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MinY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Find the minimum y component of the shape.
MinY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Find the minimum x component of all shapes.
minZ - Variable in class gov.nih.mipav.model.file.FileZVI
minZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
MIP - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: View Mode MIP Constant:
Mipav - gov.nih.mipav.view.Preferences.DefaultDisplay: MIPAV default setting
MIPAV - Static variable in class gov.nih.mipav.model.file.FileUtility: Not presently implemented.
MIPAV_CRASH - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
MIPAV_DATA_FILE_V2_HEADER - Static variable in class gov.nih.mipav.model.structures.TransMatrix
MIPAV_FROZEN - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
MIPAV_HEADER - Static variable in class gov.nih.mipav.model.file.FileXML: Mipav header string (for top of xml header).
MipavActionMetadata - Class in gov.nih.mipav.view.dialogs
MipavActionMetadata() - Constructor for class gov.nih.mipav.view.dialogs.MipavActionMetadata
mipavBuild - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: probably unused
MipavCoordinateSystem - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
MipavCoordinateSystem - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
MipavCoordinateSystem - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
MipavCoordinateSystem - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
MipavCoordinateSystem - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
MipavCoordinateSystems - Class in gov.nih.mipav.util: MipavCoordinateSystems class.
MipavCoordinateSystems() - Constructor for class gov.nih.mipav.util.MipavCoordinateSystems
mipavDataType - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
mipavDimensions - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
MipavEdgeRenderer - Class in gov.nih.mipav.view.graphVisualization
MipavEdgeRenderer() - Constructor for class gov.nih.mipav.view.graphVisualization.MipavEdgeRenderer
MipavExceptionHandler - Class in gov.nih.mipav.util
MipavExceptionHandler() - Constructor for class gov.nih.mipav.util.MipavExceptionHandler
MipavGraphPanel - Class in gov.nih.mipav.view.graphVisualization: Displays the Mipav HyperGraph.
MipavGraphPanel(Graph, ViewJFrameImage, JDialogHyperGraph) - Constructor for class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Creates the GraphPanel display.
MipavGraphPanel.PropertiesDialog - Class in gov.nih.mipav.view.graphVisualization: launches the dialog to add info
MipavGraphXMLContentHandler - Class in gov.nih.mipav.view.graphVisualization: Parses the MIPAX Graph XML file.
MipavGraphXMLContentHandler() - Constructor for class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler: Creates the content handler.
MipavGraphXMLWriter - Class in gov.nih.mipav.view.graphVisualization: Writes the mipav graph to .xml format.
MipavGraphXMLWriter(File) - Constructor for class gov.nih.mipav.view.graphVisualization.MipavGraphXMLWriter: Writes the Graph in the Mipav Graph XML format.
MipavInitGPU - Class in gov.nih.mipav.util
MipavInitGPU() - Constructor for class gov.nih.mipav.util.MipavInitGPU
mipavInputs - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: mipav cmd line arguments
mipavLabels - Variable in class gov.nih.mipav.model.file.FileNRRD: MIPAV axis names such as X, Y, or Z
MipavLightingEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render: MipavLightingEffect uses the lights defined in the Volume/Surface/Tri-Planar view in the light shader.
MipavLightingEffect() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect: Creates a MIPAV lighting effect.
MipavMath - Class in gov.nih.mipav.util: Math functions not found in Java's Math class or they are slow.
MipavMath() - Constructor for class gov.nih.mipav.util.MipavMath
MipavMenuItem(String, JMenuItem) - Constructor for class gov.nih.mipav.view.ViewMenuBuilder.MipavMenuItem: Creates a new MipavMenuItem object.
MipavNodeRenderer - Class in gov.nih.mipav.view.graphVisualization: Overrides how the Nodes are displayed in the HyperGraph.
MipavNodeRenderer() - Constructor for class gov.nih.mipav.view.graphVisualization.MipavNodeRenderer
mipavOutputs - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: probably unused
mipavProps - Static variable in class gov.nih.mipav.view.Preferences: A list of MIPAV properties.
mipavReceiver() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Starts the DICOM image receiver.
MipavSAXReader - Class in gov.nih.mipav.view.graphVisualization: SAX Reader for the HyperGraph display.
MipavSAXReader(GraphSystem, URL) - Constructor for class gov.nih.mipav.view.graphVisualization.MipavSAXReader: Creates the MipavSAXReader which sets up the XML parser for the graph xml file.
mipavStandardButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: Radio button to save gradBval text file in mipavStandard format
MIPAVTableCellRenderer - Class in gov.nih.mipav.view: Title: MIPAVTableCellRenderer
MIPAVTableCellRenderer() - Constructor for class gov.nih.mipav.view.MIPAVTableCellRenderer: Creates a new MIPAVTableCellRenderer object.
mipavThreadPool - Static variable in class gov.nih.mipav.util.ThreadUtil
mipavUnits - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
MipavUtil - Class in gov.nih.mipav.view: A collection of static methods and frequently used and useful constants are in this utility class.
MipavUtil() - Constructor for class gov.nih.mipav.view.MipavUtil
MipavUtil.ActionAdapter - Class in gov.nih.mipav.view: Static abstract class similar to mouseAdapter to allow the catching of actionevents from components without having to implement ActionListener.
mipavVersion - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: mipav's version
mipBuffer - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Buffer to store the MIP image that results from the raytrace.
mipExtents - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: The dimensions of the MIP image.
mipImage - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: MIP image generated from the volume.
MIPMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Invoke the mip rendering mode.
MIPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Display the volume in MIP mode.
MIPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Change to the MIP mode pixel shader program.
MIPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
MIPMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Display the volume in MIP mode.
miptype_et() - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.miptype_et
mipZTable - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Table which holds the z coordinate on the 3D volume for a point (x,y) on the 2D MIP image.
mirdwt() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
mirror(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Does a mirror operation on an image, so that x, y, and z values are mirrored Calls JDialogFlip.
MirrorEdge(ModelSimpleImage, ModelSimpleImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Mirrors the edge of an arbitrary shape mask in an image using poor-mans mirroring.
MirrorEdge(ModelSimpleImage, ModelSimpleImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Mirrors the edge of an arbitrary shape.
MirrorEdge(CDMatrix, ModelSimpleImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Mirrors the edge of an arbitrary shape mask in a matrix using poor-mans mirroring.
MirrorEdge(CDMatrix, ModelSimpleImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Mirrors the edge of an arbitrary shape.
mirrorSymm(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mirror symmetry
MISC - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Misc.(*.bmp; *.pcx; *.png; *.tga; *.xbm; *.xpm).
mIsClodMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: true indicates that this surface is a clod mesh, false that it is a standard triangle mesh; clod meshes can change level of detail, triangle meshes cannot.
miSINGLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: IEEE 754 single format
miSINGLE - Static variable in class gov.nih.mipav.model.file.FileMATLAB: IEEE 754 single format
MisralaCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralaCostFunction
MisralaData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisralaObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisralbCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralbCostFunction
MisralbData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisralbObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisralcCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisralcCostFunction
MisralcData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisralcObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisraldCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.MisraldCostFunction
MisraldData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
MisraldObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
missingNumberArray - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
missingPositions - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
missingSliceArray - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
missingSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
miUINT16 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 16-bit, unsigned
miUINT16 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 16-bit, unsigned
miUINT32 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 32-bit, unsigned
miUINT32 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 32-bit, unsigned
miUINT64 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 64-bit, unsigned
miUINT64 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 64-bit, unsigned
miUINT8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 8 bit, unsigned
miUINT8 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 8 bit, unsigned
miUTF16 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Unicode UTF-16 Encoded Character Data
miUTF16 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Unicode UTF-16 Encoded Character Data
miUTF32 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Unicode UTF-32 Encoded Character Data
miUTF32 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Unicode UTF-32 Encoded Character Data
miUTF8 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Unicode UTF-8 Encoded Character Data
miUTF8 - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Unicode UTF-8 Encoded Character Data
mixColor3(int, int, int, float, float, float) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
mixColor4(int, int, int, int, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
mixedTest() - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
mixGaussEm(double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
mixGaussEm_demo() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
mixGaussOut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
mixGaussPred(double[][], double[][], AlgorithmMixGaussEM.model) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
mixGaussRnd(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
MJ_ZBEG - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
MjCorticalAnalysis - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Cortical analysis applet and viewer.
MjCorticalAnalysis(ModelImage, ModelImage, GraphicsConfiguration, ViewJFrameVolumeView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: A simple universe is created that contains a viewing platform.
MjCorticalMesh - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjCorticalMesh(int, Point3f[], int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh: Creates a new MjCorticalMesh object.
MjCorticalMesh_WM - Class in gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM
MjCorticalMesh_WM(TriMesh, Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM: Creates a new MjCorticalMesh object.
MjCorticalMesh_WM.Polylines - Class in gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM: DOCUMENT ME!
MjCorticalMesh.Edge - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjCorticalMesh.Polylines - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjCorticalMesh.Triangle - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjCorticalMesh.Vertex - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjEdgeKey - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjEdgeKey() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjEdgeKey: Creates a new MjEdgeKey object.
MjEdgeKey(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjEdgeKey: Creates a new MjEdgeKey object.
MjMathf - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjMathf() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMathf
MjMeshCurvature - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjMeshCurvature(int, Point3f[], int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjMeshCurvature: The caller is responsible for deleting the input arrays.
mjpegQuality - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
mjpegQuality - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Param to save AVI.
mjpegQuality - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: DOCUMENT ME!
mjpegQuality - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
MjPolynomial1f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Limited implementation of a floating-point polynomial of 1 variable.
MjPolynomial1f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: Creates a new MjPolynomial1f object.
MjPolynomial1f(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: Creates a new MjPolynomial1f object.
MjPrimitive - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjPrimitive() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive
MjPrimitive.Circle2f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: DOCUMENT ME!
MjPrimitive.Ray2f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Ray is R(t) = P+t*D for t >= 0.
MjPrimitive.Segment2f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Segment is S(t) = P+t*D for 0 <= t <= 1.
MjSparseMatrix - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Sparse matrix implemented with a hash map.
MjSparseMatrix() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: Matrix of undefined dimensions.
MjSparseMatrix.Index - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Used to reference a single element in the matrix.
MjVector2f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Add methods which make the Vector2f more robust and flexible to use.
MjVector2f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Constructors.
MjVector2f(float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Creates a new MjVector2f object.
MjVector2f(Tuple2f) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Creates a new MjVector2f object.
MjVector3f - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview: Add methods which make the Vector3f more robust and flexible to use.
MjVector3f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Constructors.
MjVector3f(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Creates a new MjVector3f object.
MjVector3f(Tuple3f) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Creates a new MjVector3f object.
mk - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
mk - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
mk - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
mk - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
mkCurrent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Label that gives current value of slider.
mlammx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
mle() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
mLevelDetail - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Detail level of surface; only applies to clod meshes.
mLoadImageButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Load a new ModelImage:.
mLoadImageButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Load a new ModelImage:.
mLUTButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Grouping the radio buttons:.
mLUTButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Grouping the radio buttons:.
mLUTImageA - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Independent ModelImage for independent LUT.
mLUTImageA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Independent ModelImage for independent LUT.
mLUTModel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: The LUT associated with the ModelImage imageA:.
mLUTModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: The LUT associated with the ModelImage imageA:.
mLUTSeparate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: The LUT associated with the independent texture LUT:.
mLUTSeparate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: The LUT associated with the independent texture LUT:.
MM_ALL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_CAMERA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACECOLOR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEFACETOPO - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEFLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEFLAGBORDER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEFLAGSELECT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEMARK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACENORMAL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEQUALITY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_FACEVERT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_NONE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTCOLOR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTCOORD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTCURV - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTCURVDIR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTFACETOPO - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTFLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTFLAGBORDER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTFLAGSELECT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTMARK - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTNORMAL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTQUALITY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTRADIUS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_VERTTEXCOORD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_WEDGCOLOR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_WEDGNORMAL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
MM_WEDGTEXCOORD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.MeshModel
mm2im(double[], double[], SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
mMaterial - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Surface Material.
MMD_AT_PLUS_A - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
MMD_ATA - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
mMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
mminvinterp(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
mmLabelX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
mmLabelY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
mmLabelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
mModelImageRadioButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Use the ModelImage LUT.
mModelLUTRadioButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Use the ModelImage LUT.
mModelLUTRadioButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Use the ModelImage LUT.
mMouseRotate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Rotation transform for transforming the triangle normal into world coordinates.
mmToPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Length to buffer brain by in millimeters.
MN - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
mN_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
mName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Name of surface displayed in list box.
MNARC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
mnemonic - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams
MNEQN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
mNewImageRadioButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Use a separate LUT.
mNewLUTRadioButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Use a separate LUT.
mNewLUTRadioButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM: Use a separate LUT.
MNJXS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
MNQUA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
MNSUA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
mNumberTriangles - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Total number of triangles in the meshes.
mobileLoc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 470 - 4 bytes.
mobjtype - Variable in enum gov.nih.mipav.model.structures.jama.METIS.mobjtype_et
mobjtype_et(int) - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.mobjtype_et
MockCostFunctionBase(int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase
MockCostFunctionBase(int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase
MockCostFunctionBase2(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
MockDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.MockDirectory
mod - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: modulus, 0 <= mod <= 1.
mod - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Mouseevent mask
mod - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: DOCUMENT ME!
mod - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: DOCUMENT ME!
mod(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
modalities - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
modality - Variable in class gov.nih.mipav.model.file.FileInfoBase: Indicates the modality (medical image type) of the dataset.
modality - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
modality - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
Modality(int, String) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.Modality
MODALITY - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeModality: The label to use for the parameter indicating the new units
modalityBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
modalityBox - Variable in class gov.nih.mipav.view.JPanelEditModality: DOCUMENT ME!
modalityField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
modalityStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Deprecated.
No longer needed since enum works now
modalityStr - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
modalityString - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
modalityString - Variable in class gov.nih.mipav.model.file.FileInfoNRRD: Diffusion weighted MRI is currently the only value that has been seen for modality in our samples.
modButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Indicates mode - VOI, LEVELSET, or MASK.
mode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Indicates mode - VOI, LEVELSET, or MASK.
mode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Indicates the type of result mask: BITSET or SHORT.
mode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
mode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
mode - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams
mode - Variable in class gov.nih.mipav.model.algorithms.Lmmin: mode is an integer input variable.
mode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Swap mode, either 3D or 4D.
mode - Variable in class gov.nih.mipav.model.file.FileInfoCZI
mode - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
mode - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_precision
mode - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
mode - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: Mode
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Mode - region or window
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogReslice: Interpolation mode.
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Swap mode, either 3D or 4D
mode - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Mode of operation for the dialog
mode - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Current mode, init to stop.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Current mode std or fly.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Current mode, init to stop.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Current behavior mode.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Current mode, init to stop.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Current mode.
mode - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: mode - used to describe the cursor mode.
mode - Variable in class gov.nih.mipav.view.renderer.MouseEventVector: Current mode.
mode - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The current mode of the histogram component.
mode - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: mode - used to describe the cursor mode.
mode - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The current mode of the histogram component.
mode - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
mode - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
mode(int[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Finds the mode value of the list.
MODE(int) - Constructor for enum gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_ANTIREFLECT - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_ANTISYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_CONSTANT_EDGE - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_INVALID - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_MAX - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_PERIODIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_PERIODIZATION - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_REFLECT - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_SMOOTH - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
MODE_ZEROPAD - gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE
mode0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000
mode1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000
mode2 - Variable in class gov.nih.mipav.model.file.FileJPEG2000
modeAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
modeAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
modeAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
modeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
modeB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
ModeCOMPOSITE - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: COMPOSITE rendering mode constant.
modeCount - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: Mode Count
modeFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
modeFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
modeFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
modeFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Haralick mode filter.
modeFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
modeFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
modeG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
modeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
modeGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Radio button group reference.
modeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
modeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
modeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
model - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
model - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
model - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
model - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
model - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Model dimension.
model - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector
model - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter.FilterType
model - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource: DOCUMENT ME!
model - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Microscope
model - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective
model - Variable in class gov.nih.mipav.model.file.FileSVS
model - Variable in class gov.nih.mipav.model.file.FileTiff
model - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
model - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
model - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: AAM model reference.
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
model - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
model - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
model(double[][], double[][][], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM.model
Model - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Model() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
Model(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Get the model at level i.
Model(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Get the model at level i.
MODEL - Static variable in class gov.nih.mipav.model.file.FileSVS
MODEL - Static variable in class gov.nih.mipav.model.file.FileTiff
model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
model_file_name - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
model_file_name - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
MODEL_PIXEL_SCALE - Static variable in class gov.nih.mipav.model.file.FileSVS
MODEL_PIXEL_SCALE - Static variable in class gov.nih.mipav.model.file.FileTiff
model_residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
MODEL_TIEPOINT - Static variable in class gov.nih.mipav.model.file.FileSVS
MODEL_TIEPOINT - Static variable in class gov.nih.mipav.model.file.FileTiff
model2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
model2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
modelBessel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
modelBessel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
modelBessel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
modelBessel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: key images variables.
modelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: key images variables.
ModelClodMesh - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A triangle mesh that represents a level surface.
ModelClodMesh(Point3f[], int[], ModelCollapseRecord[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: A triangle mesh whose vertices have a common vertex color and vertex normal vectors that are computed from the geometry of the mesh itself.
ModelCollapseRecord - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A simple triangle mesh that represents a level surface.
ModelCollapseRecord() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: The default constructor is used by ModelClodMesh for creating a record before loading its data from disk.
ModelCollapseRecord(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: This constructor is only used by the class ModelSurfaceDecimator for creating records from edge collapse data during the edge collapse process.
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
modelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
modelDirName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
modelDirName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
ModelDisplacement(ModelSimpleImage, CAAMShape, CDVector, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs one model parameter regression experiment.
modelDisplayed - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Enables the user to visualize the simple ellipse-based model of the worm during lattice construction.
ModelEstimateTexDiff(ModelSimpleImage, CDVector, CAAMShape, CDVector, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Wrapper to calculate the pixel difference from a model instance and an image.
ModelEstimateTexDiff(ModelSimpleImage, CDVector, CAAMShape, CDVector, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Calculates the pixel difference from a model instance and an image.
modelFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
modelFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
modelFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
modelFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
modelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
modelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
modelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
modelFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
modelFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
modelFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
ModelHess(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Algorithm D5.5.1 (look at page 315-318 for code) Description: Make Hc has positive definite Only step 13 is implemented, because of shortcut by the use of LAPACK
ModelHistogram - Class in gov.nih.mipav.model.structures: Histogram model extends ModelStorageBase and stores and processes information about histograms.
ModelHistogram(int, int[]) - Constructor for class gov.nih.mipav.model.structures.ModelHistogram: ModelHistogram.
ModelImage - Class in gov.nih.mipav.model.structures: This class extends the generic buffer class ModelStorageArray and is used to store n-dimensional images and buffer class that supports boolean, byte, short, int, long, float, double, etc. data types.
ModelImage(int, int[], String) - Constructor for class gov.nih.mipav.model.structures.ModelImage: Creates a new ModelImage object, registering it to the default user interface.
ModelImage(int, int[], String, ViewUserInterface) - Constructor for class gov.nih.mipav.model.structures.ModelImage: Deprecated.
Only one ViewUserInterface should be instantiated for an instance of MIPAV running, so _UI should be ViewUserInterface.getReference()
ModelImage(ModelSimpleImage, String) - Constructor for class gov.nih.mipav.model.structures.ModelImage: Creates a new ModelImage object based on an existing ModelSimpleImage, only exists as a FLOAT datatype.
ModelImage(ModelStorageBase.DataType, int[], String) - Constructor for class gov.nih.mipav.model.structures.ModelImage: Creates a new ModelImage object, registering it to the default user interface.
ModelImage(CDVector, ModelSimpleImage, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Generate model instance (match pose to 'shape') and render the instance into the image 'img'.
ModelImage(CDVector, ModelSimpleImage, CAAMShape, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Generates a model image based on the parameters in 'c' with various options.
ModelImage3DLayout - Class in gov.nih.mipav.view.renderer.flythroughview: Used to store the information and layout which describes a volume of data.
ModelImage3DLayout(int, int, int, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.ModelImage3DLayout: Create a volume with the specified dimensions.
ModelImage3DLayout.GradientNeighbors - Class in gov.nih.mipav.view.renderer.flythroughview: Stores the indexes into a linear array for the samples to use in computing finite difference based gradients as follows:
ModelImageEx(CAAMShape, CDVector, ModelSimpleImage, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Generates a synthetic image from the AAM using the model parameters in 'c'.
ModelImageToImageJConversion - Class in gov.nih.mipav.model.structures
ModelImageToImageJConversion() - Constructor for class gov.nih.mipav.model.structures.ModelImageToImageJConversion
modelImageVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
modelIndex - Variable in class gov.nih.mipav.model.structures.TableSorter.Row: DOCUMENT ME!
modelIndex(int) - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
modelingComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
modelList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
ModelLUT - Class in gov.nih.mipav.model.structures: Model of a Lookup Table (LUT).
ModelLUT() - Constructor for class gov.nih.mipav.model.structures.ModelLUT: Default Constructor.
ModelLUT(int, int, int[]) - Constructor for class gov.nih.mipav.model.structures.ModelLUT: Constructor.
ModelLUTHelper - Class in gov.nih.mipav.view.renderer.flythroughview: A helper class to map image values to RGB colors.
ModelLUTHelper(ModelLUT) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.ModelLUTHelper: Constructor.
modelName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ModelString
modelName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ModelString
modelName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ModelString
ModelName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ModelQuadMesh - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A simple quadrilateral mesh that represents a level surface.
ModelQuadMesh(Point3f[], int[], int, int, float[][], float) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: A quad mesh whose vertex normal vectors are computed from the geometry of the mesh itself.
ModelQuadMesh(Point3f[], Vector3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: A quad mesh whose vertex normal vectors have been precomputed.
ModelReduction() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Return model reduction.
modelRGB - Variable in class gov.nih.mipav.model.file.FileImageXML: RGB lookup table associated with the file.
modelRGB - Variable in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
modelRGB - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
ModelRGB - Class in gov.nih.mipav.model.structures: Model of a RGB Table. 256 length red, green, and blue tables are constructed from the red, green, and blue transfer functions.
ModelRGB() - Constructor for class gov.nih.mipav.model.structures.ModelRGB: Default constructor.
ModelRGB(int[]) - Constructor for class gov.nih.mipav.model.structures.ModelRGB: constructor.
modelRGB2 - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
models - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: SVM model.
ModelScale(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq
ModelSerialCloneable - Class in gov.nih.mipav.model.structures: This class clones (copies) by serializing the object (providing it can be serialized).
ModelSerialCloneable() - Constructor for class gov.nih.mipav.model.structures.ModelSerialCloneable
ModelSet - Class in gov.nih.mipav.view.renderer.J3D.model.structures: Used in ModelSurfaceDecimator and ModelSurfaceTopology.
ModelSet() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: Creates a new ModelSet object.
ModelSet(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: Creates a new ModelSet object.
ModelSet(ModelSet) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: Creates a new ModelSet object.
ModelSimpleImage - Class in gov.nih.mipav.model.structures: This is very simple class to store a float type image of up to four dimensions.
ModelSimpleImage() - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Add the empty default contructor.
ModelSimpleImage(int[]) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents with the resolutions defaulted to 1.
ModelSimpleImage(int[], float[]) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents and the resolutions.
ModelSimpleImage(int[], float[], boolean) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents, the resolutions.
ModelSimpleImage(int[], float[], ModelImage) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents, the resolutions, and optionally, the image data.
ModelSimpleImage(int[], float[], ModelImage, int) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents, the resolutions, and the image data.
ModelSimpleImage(ModelImage) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents, the resolutions, and optionall, the image data.
ModelSimpleImage(ModelImage, int) - Constructor for class gov.nih.mipav.model.structures.ModelSimpleImage: Creates a class to hold the minimum information about an image - the extents, the resolutions, and the image data.
modelsSVM - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: SVM model vector.
ModelStorageBase - Class in gov.nih.mipav.model.structures
ModelStorageBase() - Constructor for class gov.nih.mipav.model.structures.ModelStorageBase: Default constructor.
ModelStorageBase(int, int[]) - Constructor for class gov.nih.mipav.model.structures.ModelStorageBase: Allocates buffer memory of the specified type.
ModelStorageBase(ModelStorageBase.DataType, int[]) - Constructor for class gov.nih.mipav.model.structures.ModelStorageBase: Allocates buffer memory of the specified type.
ModelStorageBase.DataType - Enum in gov.nih.mipav.model.structures
ModelString(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ModelString
ModelString(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ModelString
ModelString(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ModelString
ModelString(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ModelString
ModelString(String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ModelString
ModelString(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ModelString
ModelString(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ModelString
ModelString(String, String, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ModelString
modelStructure - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: SVM model vector.
ModelSurfaceDecimator - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A triangle decimator that is used for continuous level of detail of a triangle mesh.
ModelSurfaceDecimator(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: The decimator constructed by this method is designed to be reused, if necessary, for decimating multiple meshes.
ModelSurfaceDecimator.HeapRecord - Class in gov.nih.mipav.view.renderer.J3D.model.structures: The representation of a heap element.
ModelSurfaceExtractor - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A level surface extractor that is based on decomposing voxels into tetrahedra, assuming a linear interpolation on the tetrahedra, and extracting triangular level sets for those tetrahedra.
ModelSurfaceExtractor(int, int, int, int[], float, float, float, int[], float[], TransMatrix) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor: Create a level surface extractor for a 3D image.
ModelSurfaceExtractorCubes - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A level surface extractor that is based on decomposing voxels into cubes, assuming a linear interpolation on the cubes, and extracting triangular level sets for those cubes.
ModelSurfaceExtractorCubes(int, int, int, int[], float, float, float, int[], float[], TransMatrix) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractorCubes: Create a level surface extractor for a 3D image.
ModelSurfaceTopology - Class in gov.nih.mipav.view.renderer.J3D.model.structures: This is an implementation of a vertex-edge-triangle table.
ModelSurfaceTopology() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: The default constructor whose job is solely to allocate the hashmaps for the vertex-edge-triangle table.
ModelSurfaceTopology(int, float, int, float, int, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Creates a new ModelSurfaceTopology object.
ModelSurfaceTopology.Edge - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A representation of an edge for the vertex-edge-triangle table.
ModelSurfaceTopology.EdgeAttribute - Class in gov.nih.mipav.view.renderer.J3D.model.structures: The attributes associated with an edge.
ModelSurfaceTopology.Statistics - Class in gov.nih.mipav.view.renderer.J3D.model.structures: For debugging and testing.
ModelSurfaceTopology.Triangle - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A representation of a triangle for the vertex-edge-triangle table.
ModelSurfaceTopology.TriangleAttribute - Class in gov.nih.mipav.view.renderer.J3D.model.structures: The attributes associated with a triangle.
ModelSurfaceTopology.Vertex - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A representation of a vertex for the vertex-edge-triangle table.
ModelSurfaceTopology.VertexAttribute - Class in gov.nih.mipav.view.renderer.J3D.model.structures: The attributes associated with a vertex.
modelToFile(Vector3f, Vector3f, ModelStorageBase) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: ModelToFile transform.
ModelToScreen(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Translate from Model coordinates to normalized plane coordinates:
ModelToScreen(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Translate from Model coordinates to normalized plane coordinates:
modelToView - Variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
ModelTriangleMesh - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A simple triangle mesh that represents a level surface.
ModelTriangleMesh(ModelTriangleMesh) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Copies a ModelTriangleMesh by copying it's components.
ModelTriangleMesh(Point3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors are computed from the geometry of the mesh itself.
ModelTriangleMesh(Point3f[], Vector3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors have been precomputed.
ModelTriangleMesh(Point3f[], Vector3f[], int[], Color4f[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors have been precomputed.
ModelTriangleMesh(Point3f[], Vector3f[], Color4f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors have been precomputed.
ModelTriangleMesh(Point3f[], Vector3f[], Color4f[], TexCoord3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors have been precomputed.
ModelTriangleMesh(Point3f[], Vector3f[], TexCoord3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors have been precomputed.
ModelTriangleMesh(Vector3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: A triangle mesh whose vertex normal vectors are computed from the geometry of the mesh itself.
ModelTriangleMesh.Edge - Class in gov.nih.mipav.view.renderer.J3D.model.structures: A representation of an edge for the vertex-edge-triangle table.
ModelTriangleMesh.UnorderedSetInt - Class in gov.nih.mipav.view.renderer.J3D.model.structures: DOCUMENT ME!
ModelTriangleMeshCurvatures - Class in gov.nih.mipav.view.renderer.J3D.model.structures: Storage representation for a triangle mesh.
ModelTriangleMeshCurvatures(ModelTriangleMesh) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Create a set of the min/max curvatures computed for each vertex in the triangle mesh.
ModelTriangleMeshCurvatures(Point3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Create a set of the min/max curvatures computed for each vertex in the triangle mesh.
ModelTriangleMeshCurvatures(Point3f[], Vector3f[], int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMeshCurvatures: Create a set of the min/max curvatures computed for each vertex in the triangle mesh.
ModelTriangleMeshCurveSegments - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview: DOCUMENT ME!
ModelTriangleMeshCurveSegments(ModelTriangleMesh, FlyPathGraphSamples, FlyPathGraphCurve, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Creates a new ModelTriangleMeshCurveSegments object.
modelViewLabel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Labels for the current position in 3D ModelView coordinates:.
modelViewLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current position in 3D ModelView coordinates.
modelViewLabelVals - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
modelViewLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Displayed values for the current position in 3D ModelView coordinates.
ModeMIP - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: MIP rendering mode constant.
MODEP - gov.nih.mipav.model.algorithms.libdt.Split_mode
modePointCounts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
modeR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
modes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
modes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
modes - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
modes - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
modesImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
modesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
ModeSURFACE - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: SURFACE rendering mode constant.
ModeSURFACEFAST - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Surface faset rendering mode constant.
modeTable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
ModeXRAY - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DRR rendering mode constant.
ModHuffmanCodingException(String) - Constructor for exception gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream.ModHuffmanCodingException
ModHuffmanCodingException(String) - Constructor for exception gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream.ModHuffmanCodingException
modHuffmanCompression - Variable in class gov.nih.mipav.model.file.FileSVS
modHuffmanCompression - Variable in class gov.nih.mipav.model.file.FileTiff
modHuffmanDecompresser(byte[], byte[]) - Method in class gov.nih.mipav.model.file.FileSVS
modHuffmanDecompresser(byte[], byte[]) - Method in class gov.nih.mipav.model.file.FileTiff
ModHuffmanInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
ModHuffmanInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
modi - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: Imaginary part of modulus or complementary modulus.
modifDatesBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
modified - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
modified() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
modified(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
MODIFIED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
MODIFIED_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.Lmmin
MODIFIED_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.LsqFit
MODIFIED_ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
ModifiedCholeskyFactorization - Class in gov.nih.mipav.model.algorithms: Copyright (c) 2015, Sheung Hun Cheng and Nicholas J.
ModifiedCholeskyFactorization() - Constructor for class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
ModifiedCholeskyFactorization(double[][], double, double[][], double[][], double[][], double[][], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
modify3DMarker(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
modify3DMarker(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
modifyAnnotation(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Enables the user to move an annotation point with the mouse.
modifyAnnotations(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
modifyDialog - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
modifyEntry(Class, Class...) - Method in class gov.nih.mipav.plugins.ManifestFile: Inserts all the dependents that are not currently a dependent into c's entry into the manifest.
modifyFlag - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Used to "lock" display when an algorithm is in the calculation process.
modifyGraphPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
modifyLattice(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
modifyLattice(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Enables the user to modify the lattice point with the mouse.
modifyLeftRightMarker(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Sets the currently selected point (lattice or annotation).
modifyStatusPanel() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Panel that builds the status display panel.
modifyTriangle(ModelSurfaceTopology.Triangle, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: When an edge is collapsed, all triangles sharing the edge have been removed.
modImg - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Model image pointer
modImgOffset - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The current offset of the raw pixel data in the RAW file
ModModREADInputStream(InputStream, int) - Constructor for class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
ModModREADInputStream(InputStream, int) - Constructor for class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
modr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: Real part of modulus or complementary modulus.
ModREADInputStream(InputStream, int) - Constructor for class gov.nih.mipav.model.file.FileSVS.ModREADInputStream
ModREADInputStream(InputStream, int) - Constructor for class gov.nih.mipav.model.file.FileTiff.ModREADInputStream
modulateAlphaImageBytes(float[], TransferFunction) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Given a single value volume and opacity map, modulate the alpha channel values for each value.
modulateAlphaImageBytes(float[], RendererMapColor, ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Given an RGB value volume and opacity map for each channel, modulate the alpha channel values for each value.
moebius(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
momcom - Variable in class gov.nih.mipav.model.algorithms.Integration2: indicating that the chebyshev moments c have been computed for intervals of lengths c (abs(b-a))*2**(-l), l=0,1,2, ..., momcom-1, c momcom.lt.maxp1
momcom - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: indicating that the chebyshev moments c have been computed for intervals of lengths c (abs(b-a))*2**(-l), l=0,1,2, ..., momcom-1, c momcom.lt.maxp1
momentI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
momentR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
momentum - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
momentum - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
momentum_h - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
momentum_w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
momentumLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
momentumTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
mono - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
mono - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
monoSliceEqualizer(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Allows a single monochrome image slice to be filtered.
monoSliceFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Allows a single monochrome image slice to be filtered.
monSar - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 238 Monitor SAR Flag.
month - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
monthCombobox - Variable in class gov.nih.mipav.view.JPanelEditDate: DOCUMENT ME!
monthIndex - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: DOCUMENT ME!
monthString - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mOpacity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: opacity of surface.
mOpacity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Current paint opacity
mOpacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Current paint opacity
mOpacityPaintButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Opacity paint button
mOpacityPaintButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Opacity paint button
mops - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
moptions - Variable in enum gov.nih.mipav.model.structures.jama.METIS.moptions_et
moptions_et(int) - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.moptions_et
moptype_et() - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.moptype_et
more - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.sb_tree
more - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
more - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
moreB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
moreG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
moreR - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
MORITA_SOURCE - Static variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: F(k, phi) INCOMPLETE1 E(k, phi) INCOMPLETE2 K(k) COMPLETE1 E(k) COMPLETE2 Complex arguments for first and second complete and incomplete elliptic integrals.
morl(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
MORL - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
morphGradAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
morphGradAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
morphGradAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
MORPHOLOGICAL_GRADIENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
MORPHOLOGICAL_LAPLACIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
MORPHOLOGICAL_LAPLACIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
MORPHOLOGICAL_LAPLACIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
MORPHOLOGICAL_RECONSTRUCTION_BY_DILATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
MORPHOLOGICAL_RECONSTRUCTION_BY_EROSION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
morphologyGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
morphologyPostProcessing() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
morphologyPostProcessing(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Apply the morphology filter the generate binary mask image from Fuzz-C segmentation.
morphoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mosaic - Variable in class gov.nih.mipav.model.algorithms.SIFT
mosaic - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
mosaicCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
mosaicToSliceAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
most_ccw_in_halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
most_ccw_out_halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
most_clw_in_halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
most_clw_out_halfedge() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
mostFrequentClass(Vector<Integer>, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Returns the most frequent class index of a vector with counts for the classes.
mostFrequentDClass(Vector<Double>, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Returns the most frequent class index of a vector with counts for the classes.
mostFrequentValue(HashMap<Double, Integer>, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
mostProbableClass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
mostProminentColor(int[], int) - Static method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Determines the most prominent value in a square shaped area.
mostRecentUpdate - Variable in class gov.nih.mipav.model.structures.event.VOIEvent: holds reference because referring to a VOI held by the ViewVOIVector would cause all kinds of memory clean-up concerns. may be null.
mostRecentUpdate - Variable in class gov.nih.mipav.model.structures.event.VOIVectorEvent: holds reference because referring to a VOI held by the ViewVOIVector would cause all kinds of memory clean-up concerns. may be null.
motion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Motion, standard, fly thrugh, point.
motion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Motion, standard, fly thrugh, point.
motionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
MotionDetection - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2021 Jitendra Singh Bisht Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
MotionDetection(ModelImage, double, int) - Constructor for class gov.nih.mipav.model.algorithms.MotionDetection
mouse - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
MouseBehavior - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Abstract class which implements much of the event tracking and state updating shared between Fly and Pointer behavior.
MouseBehavior - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: Title: MouseBehavior
MouseBehavior(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Initializes standard fields.
MouseBehavior(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Same as constructor above but with behaviorfix.
MouseBehavior(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Creates a new MouseBehavior object.
MouseBehavior(JPanelView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Creates new parent class with the dialog set for easy access between the user and the behaviors.
MouseBehavior(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Creates a mouse behavior object with a given transform group.
MouseBehavior(TransformGroup, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Creates a new MouseBehavior object.
MouseBehaviorCallback - Interface in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: Also added this line: public final static int SELECTION=4; And this method: public void transformClicked Also added this line: public final static int PROPERTIES=5; Added this method: public void transformDoubleClicked.
MouseBehaviorRenderer - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Abstract class which implements much of the event tracking and state updating shared between Fly and Pointer behavior.
MouseBehaviorRenderer(JPanelView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Creates new parent class with the dialog set for easy access between the user and the behaviors.
mouseBehaviorRotate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Mouse rotate behavior.
mouseBehaviorTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Mouse translate behavior.
mouseBehaviorZoom - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Mouse zoom behavior.
mouseCallback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Mouse behavior callback.
mouseCallback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Mouse behavior callback.
MouseClickAdapter() - Constructor for class gov.nih.mipav.view.ViewJFrameRegisteredImages.MouseClickAdapter
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.model.structures.TableSorter.MouseHandler: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.CheckTreeManager
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse clicked
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: When the user clicks on a header, sorts the column.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: When the user right clicks on a header, sorts the column. when the user left clicks, a popup menu gives the option to add a parameter to the table, triggering a JDialog
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: When the user right clicks on a header, sorts the column. when the user left clicks, a popup menu gives the option to add a parameter to the table, triggering a JDialog
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: When the user clicks on a header, sorts the column.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Listening to mouse events when updating paint.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseClicked.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Not used method.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Not used method.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Implement MouseInterface abstract method.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: A mouse event.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Handle the double mouse click event when the use swith between the dual image panel view.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse clicked
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Gets the end point of the rubberband.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse clicked
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: A mouse event.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse clicked
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: When the mouse is clicked in the image, several different things may happen.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: When an image is double-clicked with the right-mouse button, the slice of the parent image is updated to match the current volume slice.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: When the user clicks on a header, sorts the column.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: When the user double clicks on a selection, sends a query at the next query level; when the user clicks on a header, sorts the column.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages.MouseClickAdapter: Responds only on double-clicked events from the JList.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: unchanged.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Calls color chooser.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Checks whether the mouse event is a normal system event for popups.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: This listens for when the buttons to hide or close a progress bar are clicked.
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
mouseClicked(MouseEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen: Do nothing.
mouseControlRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Radio check button for mouse control.
mouseCount - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Mouse event counter.
mouseCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Mouse event counter.
mouseCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Mouse event counter.
mouseCriterion - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
mouseDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Mouse recorder dialog associated with surface plotter.
mouseDragged - Variable in class gov.nih.mipav.view.RubberbandPolyline: DOCUMENT ME!
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Sets the width and height variables in the glass pane based upon how far the mouse has been dragged and repaints the glass pane.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseDragAdapter: DOCUMENT ME!
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseDragged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: If recording, adds this mouse event to the mouseEvents vector found at location current.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseListener.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: The mouseDragged event is used when the right mouse button press down and dragged to adjust the camera viewing direction.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: mouseDragged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: If recording, adds this mouse event to the mouseEvents vector found at location current.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseMotionListener.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: mouseDragged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: If recording, adds this mouse event to the mouseEvents vector found at location current.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: mouseDragged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Invoked when the mouse is dragged while a button is held down.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseMotionListener.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Continually updates the image depending on where the mouse is.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI: Rotates the object with a virtual trackball:
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Invoked when the mouse is dragged while a button is held down.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Rotates the object with a virtual trackball:
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Rotates the object with a virtual trackball:
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Gets the stretch point of the rubberband.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandEllipse: Gets the stretch point of the rubberband.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Makes a contour out of the curve drawn.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Makes a contour out of the curve drawn.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandRectangleVOI: Gets the stretch point of the rubberband.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: mouseDragged only updates the histogram display header when the mouse passes over a point for which the linear correlation coefficient and colocalizations have already been calculated.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse dragged
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: A mouse event.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: ******************* Mouse Motion Events ***************************.********************************************* ***********************
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Continually updates the image depending on where the mouse is.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse dragged
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Drags an VOI real time by calling a series of translations and draws.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: A mouse-dragged event.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: continually updates the image depending on where the mouse is - unchanged.
mouseDragged(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Continually updates the image depending on where the mouse is.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse entered
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Do nothing.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseEntered.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Not used method.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Not used method.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Implement MouseInterface abstract method.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Methods do nothing, implemented mouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse entered
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse entered
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Store the lastMouse position.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: ************************ Mouse Events *****************************.********************************************* ***********************
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse entered
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Mouse entry handler: tells the parent tri-image frame about the current component orientation.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Unchanged.
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
mouseEntered(MouseEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen: Do nothing.
mouseEvents - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Sequence of mouse events( press, shift and release as a whole mouse event).
mouseEvents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Vector to record mouse events.
mouseEvents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
mouseEvents - Variable in class gov.nih.mipav.view.renderer.MouseEventVector: Vector to record mouse events.
MouseEventVector - Class in gov.nih.mipav.view.renderer: This class holds the necessary information for each "mouse event" that shows up in the list.
MouseEventVector(String, double[], boolean, Object, int) - Constructor for class gov.nih.mipav.view.renderer.MouseEventVector: Creates a new structure to hold necessary information, with the name in the list and the beginning view saved.
MouseEventVectorPlotter - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview: This class holds the necessary information for each "mouse event" that shows up in the list.
MouseEventVectorPlotter(String, Transform3D, boolean, Object, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Creates a new structure to hold necessary information, with the name in the list and the beginning view saved.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseExited(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse exited
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseExited.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Not used method.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Not used method.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a mouselistener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Implement MouseInterface abstract method.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: One of the overrides necessary to be a MouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: One of the overrides necessary to be a MouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Resets the level set stack.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Methods do nothing, implemented mouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Invoked when the mouse leaves a component.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse exited
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Invoked when the mouse leaves a component.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse exited
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Resets the level set stack.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse exited
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Mouse exit handler: repaints the image to get rid of the cursor if we are in a mode that custom draws the mouse cursor.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Unchanged.
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
mouseExited(MouseEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen: Do nothing.
mouseFlythru - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: 3D mouse user-interface panel:
MouseHandler() - Constructor for class gov.nih.mipav.model.structures.TableSorter.MouseHandler
mouseIntensityLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The intensity of the current mouse position within the mip.
mouseLabel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The opacity slider label.
mouseLabel - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

The opacity slider label.
mouseLabelB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The opacity slider label.
mouseLabelB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

The opacity slider label.
mouseListener - Variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
mouseMax - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: logical min and max mouse values for calculations, this is the range of the normalized input values
mouseMin - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: logical min and max mouse values for calculations, this is the range of the normalized input values
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseMoved.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseMotionListener.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: mouseMoved.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: One of the overrides necessary to be a MouseMotionListener.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: mouseMoved.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Invoked when the mouse moves.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: One of the overrides necessary to be a MouseMotionListener.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseMotionListener.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseMotionListener.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Changes the cursor so that function can add points depending on how near the line it is.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Stretches if the VOI is active.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Stretches if the VOI is active.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse moved
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: A mouse event.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Changes the cursor to crosshair and enables the zoom box rubberband if the cursor is in the graph; also sees if cursor is near a valid point and prints it out.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Changes the cursor so that function can add points depending on how near the line it is.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse moved
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: If the mode is level set, draws level sets as user moves mouse.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: A mouse event.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Changes the LUT text field display based on the Y value of the mouse when inside ViewJComponentLUT - unchanged.
mouseMoved(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Changes the LUT text field display based on the Y value of the mouse when inside ViewJComponentLUT.
MouseOrbit - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: DOCUMENT ME!
MouseOrbit() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Creates a new MouseOrbit object.
MouseOrbit(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Creates a new MouseOrbit object.
MouseOrbit(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Creates a new MouseOrbit object.
MouseOrbit(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Creates a new MouseOrbit object.
MouseOrbit(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: Creates a new MouseOrbit object.
mousePanel - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Panel holds the mouse move buttons.
mousePanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Panel holds the mouse move buttons.
mousePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
mousePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dialog for recording and playing back mouse events.
mousePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dialog for recording and playing back mouse events.
mousePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
mousePathPlanning - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
MousePopupListener() - Constructor for class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
MousePopupListener() - Constructor for class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mousePressed(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
mousePressed(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse pressed
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Sets the x and y variables in the glass pane to indicate that we've begun drawing a rectangle.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: When the user presses the mouse in any valid frame of the GUI, causes all the glass panes to repaint.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Do nothing.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.PopupListener: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseAdapter: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mousePressed, store the current transformation for the selected image so the new transformations calculated in the mouseDragged function can be concatenated onto the current transform.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Not used method.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Not used method.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Implement MouseInterface abstract method.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: One of the overrides necessary to be a MouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: If mode is RECORD_MODE, saves the current view and creates a new MouseEventVector.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: If mode is RECORD_MODE, saves the current view and creates a new MouseEventVectorPlotter.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: One of the overrides necessary to be a MouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Checks for making new points or not.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: A mouse event.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Methods do nothing, implemented mouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Invoked when a mouse button is pressed.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: ************************************************************************ ***************************** Mouse Events *****************************
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse pressed
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI: Rotates the object with a virtual trackball:
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Invoked when a mouse button is pressed.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Rotates the object with a virtual trackball:
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Gets the anchor point of the rubberband.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse pressed
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: A mouse event.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Checks for making new points or not.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse pressed
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Sets the mode of the program depending on the cursor mode.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: A mouse-pressed event.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: unchanged.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Checks whether the user is making new points in the lut function or not.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Checks whether the mouse event is a normal system event for popups.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen: Wakes up the VUI thread on a user's mouse click in the image if it is sleeping while waiting for the splash screen to be displayed.
mousePressed(MouseEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.PopupListener: DOCUMENT ME!
mousePressedPaint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse pressed paint
mousePressedPaint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: When a mousePressed event is triggered and the mode is DROPPER_PAINT, ERASER_PAINT, PAINT_VOI, or MAG_REGION this function is called.
mousePressedPaint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse pressed paint
mousePressIsShiftDown - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Keep track of state of shift for mouse Pressed events.
MouseProperties - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: Converting a copy of MouseSelection to be used to with DoubleClicking (PickProperties).
MouseProperties() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Creates a default mouse Selection behavior.
MouseProperties(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Creates a Selection behavior.
MouseProperties(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Same as above but with boolean fix.
MouseProperties(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Same as above but with Viewer Transform Group and boolean fix.
MouseProperties(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: Creates a rotate behavior given the transform group.
mouseReleased - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Flag to indicate whether the mouseReleased event triggered or not.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse released
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener: Sets the width and height variables appropriately, and lets the glass pane know that we are done drawing the rectangle.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.HeaderListener: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay.HeaderListener: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay.HeaderListener: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay.HeaderListener: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Do nothing.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.PopupListener: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: mouseReleased.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Mouse release event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Used in MouseRecorder to stop one series of slide moves.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Used in MouseRecorder to stop one series of slide moves.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Mouse release event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: One of the overrides necessary to be a MouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Implement MouseInterface abstract method.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: One of the overrides necessary to be a MouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: If recording, adds this mouse event to the mouseEvents vector found at location current.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Used in MouseRecorder to stop one series of slide moves.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Translates the event to the appropriate version on the canvas, then sends it to the canvas.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Override mouse release so that we can force another update of the current transform to the callback.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: If recording, adds this mouse event to the mouseEvents vector found at location current.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Used in MouseRecorder to stop one series of slide moves.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: One of the overrides necessary to be a MouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Updates image and shows it.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: A mouse event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Methods do nothing, implemented mouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Invoked when a mouse button is released.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: One of the overrides necessary to be a MouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: One of the overrides necessary to be a MouseListener.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse released
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI: Rotates the object with a virtual trackball:
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Invoked when a mouse button is released.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Rotates the object with a virtual trackball:
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.Rubberband: Gets the end point of the rubberband.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandEllipse: Makes an elliptical using an contour VOI upon a mouse release.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLine: Makes a line VOI upon mouse release.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Makes a VOI out of the contours upon a mouse release event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandPolyline: Makes an VOI out of the contours.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandProtractor: Makes a VOI.PROTRACTOR.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.RubberbandRectangleVOI: Makes a VOI out of the contours.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: If the correlation coefficient and colocalizations have not already been calculated at the mouse release point, then a call to AlgorithmColocalizationRegression calculates them.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse released
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: A mouse event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Checks to see that the zoom box is valid, then redraws the graph using the zoom box as bounds.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Updates image and shows it.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse released
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: This function sets up and draws the VOI according to the mode.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: A mouse-released event.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener: Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: unchanged.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT: Updates the image and shows it in case a new point has been added to the function (or removed).
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Checks whether the mouse event is a normal system event for popups.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen: Do nothing.
mouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.PopupListener: DOCUMENT ME!
mouseRot - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
MouseRotate - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: MouseRotate is a Java3D behavior object that lets users control the rotation of an object via a mouse.
MouseRotate() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Creates a default mouse rotate behavior.
MouseRotate(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Creates a rotate behavior.
MouseRotate(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Same as above but with boolean fix.
MouseRotate(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Same as above but with Viewer Transform Group and boolean fix.
MouseRotate(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Creates a rotate behavior given the transform group.
MouseRotate(TransformGroup, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: Creates a new MouseRotate object.
mouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Mouse Rotate behavior.
mouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Mouse Rotate behavior.
mouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Mouse Rotate behavior.
MouseRotateExt - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: MouseRotateExt extends the MouseRotate class by providing public access to certain states of the MouseBehavior that are stored as protected values with no other public accesss.
MouseRotateExt() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseRotateExt: Creates a new MouseRotateExt object.
MouseRotateExt() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a default mouse rotate behavior.
MouseRotateExt(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a rotate behavior.
MouseRotateExt(Component) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a rotate behavior that uses AWT listeners and behavior posts rather than WakeupOnAWTEvent.
MouseRotateExt(Component, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a rotate behavior that uses AWT listeners and behavior posts rather than WakeupOnAWTEvent.
MouseRotateExt(Component, TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a rotate behavior that uses AWT listeners and behavior posts rather than WakeupOnAWTEvent.
MouseRotateExt(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Creates a rotate behavior given the transform group.
mouseRotationCutoffSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Mouse rotation sensitivity cutoff slider
mouseRotationSpeedSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Mouse rotation speed slider.
mouseRotationSpeedSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Mouse rotation speed slider.
MouseSelection - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: Converting a copy of MouseRotation to be used to with picking (PickSelection).
MouseSelection() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Creates a default mouse Selection behavior.
MouseSelection(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Creates a Selection behavior.
MouseSelection(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Same as above but with boolean fix.
MouseSelection(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Same as above but with Viewer Transform Group and boolean fix.
MouseSelection(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: Creates a rotate behavior given the transform group.
mouseSelection3D - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
mouseSlider - Variable in class gov.nih.mipav.view.JPanelHistogram: slider for small LUT changes
mouseSlider - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
mouseSlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
mouseSlider - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Opacity X scale sliders.
mouseSlider - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Opacity X scale sliders.
mouseSliderB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
mouseSliderB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
mouseSliderB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Opacity X scale sliders.
mouseSliderB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Opacity X scale sliders.
mouseSliderGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
mouseSliderGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
mouseSliderGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
mouseSliderGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
mouseSliderLabels - Variable in class gov.nih.mipav.view.JPanelHistogram
mouseSliderLabels - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The labels below the opacity slider.
mouseSliderLabels - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

The labels below the opacity slider.
mouseSliderLabelsB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

The labels below the opacity slider.
mouseSliderLabelsB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

The labels below the opacity slider.
mouseSpeedScaler - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used to change the speed that the 3D mouse moves the camera
mouseText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Text field reference that hold the user message.
MouseTranslate - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: MouseTranslate is a Java3D behavior object that lets users control the translation (X, Y) of an object via a mouse drag motion with the third mouse button (alt-click on PC).
MouseTranslate() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Creates a default translate behavior.
MouseTranslate(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Creates a translate behavior.
MouseTranslate(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Same as above but with boolean fix.
MouseTranslate(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Same as above but with Viewer Transform Group and boolean fix.
MouseTranslate(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: Creates a mouse translate behavior given the transform group.
mouseTranslateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Mouse Translate behavior.
mouseTranslateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Mouse Translate behavior.
mouseTranslateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Mouse Translate behavior.
MouseTranslation - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: MouseTranslate is a Java3D behavior object that lets users control the translation (X, Y) of an object via a mouse drag motion with the third mouse button (alt-click on PC).
MouseTranslation() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Creates a default translate behavior.
MouseTranslation(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Creates a translate behavior.
MouseTranslation(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Same as above but with boolean fix.
MouseTranslation(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Same as above but with Viewer Transform Group and boolean fix.
MouseTranslation(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: Creates a mouse translate behavior given the transform group.
mouseTranslationCutoffSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
mouseTranslationSpeedSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Mouse translation speed slider.
mouseTranslationSpeedSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Mouse translation speed slider.
MouseWheel(MouseWheelEvent) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: Creates new thread and sets up mouse event variables appropriately.
MouseWheel(MouseWheelEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: Creates new thread and sets up mouse event variables appropriately.
MouseWheelMouseControl(MouseWheelEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: Creates new thread and sets up mouse event variables appropriately.
mouseWheelMoved(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: mouse wheel moved
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Mouse wheel event invoked from the middle mouse button roller.
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: mouse wheel moved
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Mouse wheel event invoked from the middle mouse button roller.
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: mouse wheel moved
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: ************************************************************************ ************************** Mouse Wheel Events *************************
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage: mouse wheel moved
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Mouse wheel movement handler, used to change the displayed slice in the component.
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
mouseWheelMoved(MouseWheelEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
MouseWheelPathPlanning(MouseWheelEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: Creates new thread and sets up mouse event variables appropriately.
mouseXLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The x position of the current mouse position within the mip.
mouseYLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The y position of the current mouse position within the mip.
mouseZLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The z position of the current mouse position within the mip (the z position of the volume voxel put into the mip).
MouseZoom - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: MouseZoom is a Java3D behavior object that lets users control the Z axis translation of an object via a mouse drag motion with the second mouse button.
MouseZoom() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Creates a default mouse zoom behavior.
MouseZoom(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Creates a zoom behavior.
MouseZoom(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Same as above but with boolean fix.
MouseZoom(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Same as above but with Viewer Transform Group and boolean fix.
MouseZoom(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: Creates a zoom behavior given the transform group.
mouseZoomBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Mouse Zoom behavior.
mouseZoomBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Mouse Zoom behavior.
mouseZoomBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Mouse Zoom behavior.
MouseZoomBehavior - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse: MouseZoom is a Java3D behavior object that lets users control the Z axis translation of an object via a mouse drag motion with the second mouse button.
MouseZoomBehavior() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Creates a default mouse zoom behavior.
MouseZoomBehavior(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Creates a zoom behavior.
MouseZoomBehavior(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Same as above but with boolean fix.
MouseZoomBehavior(int, TransformGroup, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Same as above but with Viewer Transform Group and boolean fix.
MouseZoomBehavior(TransformGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: Creates a zoom behavior given the transform group.
mouseZoomSpeedSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Mouse zoom speed slider.
move - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
move(VOIBase, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Moves the input VOI by the input Vector amount.
move(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Call from the JPanelFlythruMove.
move(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Call from the JPanelFlythruMove.
move(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Call from the JPanelFlythruMove.
move(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
Move() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
Move() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Updates the camera and displayed objects for rendering.
Move() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
MOVE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
MOVE_INTERSECTION_POINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
MOVE_POINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
MOVE_RIGHT - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
MOVE_VOIPOINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
moveAlongPath(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Move along the path step width.
moveAlongPath(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Move along the path step width.
moveAlongPath(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Move along the path step width.
moveBack(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
moveControlPoint(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Move the control point from its current location to the requested location.
moveControlPoint(int, int, Vector2f) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Move the control point from its current location to the requested location.
moveCursor - Static variable in class gov.nih.mipav.view.MipavUtil: A move cursor.
moveCursor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Movement mouse cursor.
moveCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
moveFiles() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
moveForward - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel
moveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel
moveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl
moveForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning
moveFront(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
movement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: EXPAND, EXPAND_CONTRACT, or CONTRACT.
movement - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
movementGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
movementGroup - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
movementGroup - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
movePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
moveRequestHash - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
MoveRequestInfo(DICOM_PDUService, Thread) - Constructor for class gov.nih.mipav.view.ViewJFrameDICOMQuery.MoveRequestInfo: Creates a new MoveRequestInfo object.
moveResults - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: list of the results of a DICOM move.
moveSelectedPoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
moveSelectedPoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
moveSelectedPoint(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Enables the user to move the selected point (lattice or annotation) with the arrow keys.
moveThread - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery.MoveRequestInfo: DOCUMENT ME!
moveToFrontCodeAndSend() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
moveToNextLine() - Method in class gov.nih.mipav.view.components.PanelManager: Force new components which are added to appear on the next line in the panel (vertically).
moveTrackBall(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: A virtual track ball.
moveVOI(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
moveVOI(int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Move VOI to a new position.
moveVOI(VOIManager, Vector3f, int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Called from the VOIManager class when multiple contours are selected and moved as a group.
moveVOI(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
moveVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
moveVOIPoint(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIText: Moves the point to the new location.
moveVOIPoint(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.VOIPoint: Moves the point to the new location.
moveVOIPoint(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called when the left-mouse is used to drag a point on the VOI.
moveVOIPosition(int, int) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Moves VOIs to new position by deltaX and deltaY.
moveVOITo(int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Moves VOI with ID == id to a new position (x,y).
movieButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Save AVI button .
movieButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Save AVI button .
movieMake - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
MovieMaker - Class in gov.nih.mipav.view.renderer.flythroughview: This class creates AVIs (.avi) out of a list of JPEG files or out of an array of java.awt.Image objects.
MovieMaker(int, int, int, File, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Constructor.
MovieMaker(int, int, int, File, File[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Constructor.
MovieMaker(File, MovieMaker.ImageDataSource) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Constructor.
MovieMaker.AWTImageSourceStream - Class in gov.nih.mipav.view.renderer.flythroughview: The java.awt.Image-based source stream to go along with ImageDataSource.
MovieMaker.ImageDataSource - Class in gov.nih.mipav.view.renderer.flythroughview: A DataSource to read from a list of JPEG image files or java.awt.Images, and turn that into a stream of JMF buffers.
MovieMaker.JpegSourceStream - Class in gov.nih.mipav.view.renderer.flythroughview: The jpeg-based source stream to go along with ImageDataSource.
moviePanel - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Movie control panel that hold mouse recorder and AVI movie control.
moving - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
MovingAverage(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
movingPickedPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
moviPosition - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
moviSubchunkPosition - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
mp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: 1D Mp(t) data from sagittal sinus VOI
Mp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
Mp3 - gov.nih.mipav.model.file.MetadataExtractor.FileType
Mp4 - gov.nih.mipav.model.file.MetadataExtractor.FileType
mPaintBrushButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint brush button
mPaintBrushButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint brush button
mPaintCanButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint can button
mPaintCanButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint can button
mPaintColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Current paint color
mPaintColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Current paint color
mPaintGrowDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint Grow Dialog.
mPaintGrowDialog - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint Grow Dialog.
mPaintToolBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Paint user-interface ToolBar
mPaintToolBar - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Paint user-interface ToolBar
mPatientSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Renders the ModelImage data with LUT changes.
mPerVertexColors_Backup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Color of surface.
mPickShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: PickShape, for picking
MPIL_vista_0Field - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
mPolygonMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Polygon mode of surface, one of PolygonAttribute.POLYGON_FILL, PolygonAttribute.POLYGON_LINE, or PolygonAttribute.POLYGON_POINT.
mppAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
mps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_state_t: the Most Probable Symbol (0 or 1)
mQ_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
mqc - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t: MQC component
MQC_NUMCTXS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
MQC_PERF_OPT - Variable in class gov.nih.mipav.model.file.FileJPEG2000
mqc_states - Variable in class gov.nih.mipav.model.file.FileJPEG2000
MQIN1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
MQUCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
MQUPH - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
mr_flip - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 254 Flip angle for grass scans (degrees).
mr_padding - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 990 spare space.
MRAcquisitionType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
mrbFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: DOCUMENT ME!
MRC - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .mrc.
mrdwt() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
mRGBModel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: The RGB LUT associated with the ModelImage imageA:.
mRGBSeparate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: The RGB LUT associated with the independent texture LUT:.
mrgFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: DOCUMENT ME!
MRI_BITMAP - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_FLOAT - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_INT - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_LONG - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_SHORT - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_TENSOR - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
MRI_UCHAR - Static variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
mri15T - gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength
mri3T - gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength
MRIProcessName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
MRIProcessName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
mriStrength - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1: The following GUI choices change algorithm operation using enums
mRMean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
mrr() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
mrtype_et() - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.mrtype_et
ms_aaaiPolyhedronTriangleControlPointOffset - Static variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Defines the relative offset in control point indices for the triangle mesh associated with the bounding polyhedron formed by the 26 neighboring control points.
ms_aiBSplineDegreeOptions - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls: DOCUMENT ME!
ms_akLUTTexture - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
ms_fInvLog2 - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
ms_fLog10 - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
ms_fSqrt3 - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
ms_fThird - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
ms_fTolerance - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: DOCUMENT ME!
ms_fTwentySeventh - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: DOCUMENT ME!
ms_iMaxSamples - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
ms_iNumLev - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
ms_iSurface - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract
ms_kFileFilter - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.SurfaceLoaderSUR: FileFilter instance for this file loader which works with the JFileChooser.
ms_kInvalid - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
ms_MaxLights - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
ms_NumHistogramLUTs - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
MSAA_SAMPLES - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
msaitr - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
msAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
msAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
msAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
msapps - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
msaup2 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
msaupd - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
MSBP - Variable in class gov.nih.mipav.model.algorithms.CVODES
mse() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
mseigt - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
msElapsed - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
msElapsed - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
mserAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER: DOCUMENT ME!
mseupd - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
MSEValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
MSF_Kruskal(int[][], int[], int, Vector<Integer>, Vector<Short>, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
MSF_Prim(int[][], int[], Vector<Integer>, Vector<Short>, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
msg_code - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
MSG_ID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Message ID - Used to distinguish this message from other messages.
MSG_ID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Move: Unique message identifier for the C-MOVE request.
MSG_ID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: The DICOM message ID.
MSG_ID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: Uniquely identifies the current C-Move RQ
MSG_TIME - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSG_TIME_H - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSG_TIME_INT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSG_TIME_TOUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSG_TIME_TSTOP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BACK_ERROR - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ABSTOL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ABSTOLQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ABSTOLQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ABSTOLS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_DQRHO - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_DQTYPE - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_EWT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_EWTQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_EWTQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_EWTS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_H0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_HMIN_HMAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_IFS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_INTERP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_IS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ISM - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ISM_IFS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITASK - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITASKB - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITER - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITOLQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITOLQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_ITOLS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_K - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_LMM - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_MAXORD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_NS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_NVECTOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_PBAR - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_PLIST - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_RELTOL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_RELTOLQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_RELTOLQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_RELTOLS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_SENSI - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_STEPS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_T - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_TB0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_TBOUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_TINTERP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_TOUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_TSTOP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_BAD_WHICH - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_CLOSE_ROOTS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_CONV_FAILS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_CVMEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_ERR_FAILS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWT_NOW_BAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWT_NOW_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWTQ_NOW_BAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWTQS_NOW_BAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_EWTS_NOW_BAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_HNIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_HNIL_DONE - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_INACTIVE_ROOTS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_LINIT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_LSOLVE_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_MAX_STEPS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_MEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NEG_HMAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NEG_HMIN - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NEG_MAXORD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_ADJ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_BCK - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_FWD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_MALLOC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_MEM - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_QUAD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_QUADSENSI - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_ROOT - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_SENSI - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_TOL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_TOLQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_TOLQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NO_TOLS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_ABSTOL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_ABSTOLQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_ABSTOLQS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_ABSTOLS - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_DKY - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_DKYA - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_F - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_FQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_G - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_P - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_Y0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_YQS0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_NULL_YS0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QRHSFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QRHSFUNC_FIRST - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QRHSFUNC_REPTD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QRHSFUNC_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QSRHSFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QSRHSFUNC_FIRST - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QSRHSFUNC_REPTD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_QSRHSFUNC_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_RHSFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_RHSFUNC_FIRST - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_RHSFUNC_REPTD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_RHSFUNC_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_RTFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SENSINIT_2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SET_SLDET - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SETUP_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SOLVE_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SRHSFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SRHSFUNC_FIRST - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SRHSFUNC_REPTD - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_SRHSFUNC_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_TOO_CLOSE - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_TOO_MUCH_ACC - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_TRET_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_WRONG_INTERP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGCV_YOUT_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_BAD_NVECTOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_BAD_SIZES - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_BAD_TINTERP - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_BAD_WHICH - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_CVMEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_JACFUNC_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_LMEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_LMEMB_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_MATCOPY_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_MATSCALEADDI_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_MATZERO_FAILED - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_MEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
MSGD_NO_ADJ - Variable in class gov.nih.mipav.model.algorithms.CVODES
msgets - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
msgPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Msg box to show the Prostate surface analysis related info.
msgPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Msg box to show the Prostate surface analysis related info.
msgPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Msg box to show the Prostate surface analysis related info.
msort(Object[], Object[], int, int, int, Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: Implements the actual merge sort.
msort(Object[], Object[], int, int, Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: Merge sorts the supplied array using the specified comparator.
msort(Object[], Object[], Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: Merge sorts the supplied array using the specified comparator.
msRawData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
msssim() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
mSurfaceBranchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Surface subtree, holds all the Shape3D objects that make up the surface.
mSurfaceMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Surface mask.
mSurfaceMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: mSurfaceMask represents the intersection of the ModelImage volume data with the triangle-meshes.
mSurfacePaint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Paint interface/algorithm for allowing the user to interactively paint the vertices of the ModelTriangleMesh.
mSurfaceShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Shape3D[] array
mSurfaceTextureImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: The ModelImage texture with LUT changes, used with the Texture3D.
msWait - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
msWait - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
mt - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: DOCUMENT ME!
mt - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
mTexture - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: 3D Texture used to display the ModelImage data as a texture mapped onto the ModelTriangleMesh.
mTextureButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Grouping the radio buttons:.
mTextureStatus - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: Currently selected ModelImage display type:.
mTextureUnitState - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: TextureUnitState contains texture information for the rendered surfaces:.
mtfFreq - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
mTriangleMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: ModelTriangleMesh.
mtry - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
mtry - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
mtry - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
mtry - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
MTryJistHook - Class in gov.nih.mipav.view.dialogs: This class is an example class for tying existing plugins into the JIST interface.
MTryJistHook() - Constructor for class gov.nih.mipav.view.dialogs.MTryJistHook
mtt_csvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
mtt_osvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
mtt_svd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
mtx - Variable in class gov.nih.mipav.model.algorithms.libdt.CovMatrix: < dimension of the (square) covariance matrix.
Mtype - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix
Mtype_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t
mu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
mu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
mu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
mu - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM.model
mu - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Center parameter
mu - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
mu - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
mu - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: negative scale factor.
mu_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
mu_increase_factor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
mu0 - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < observation matrix
mul(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
mul(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
mul(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
mul(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
mul(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
mul(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
mul(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
mul(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
mul(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
mul(MjPolynomial1f, MjPolynomial1f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: set this polynomial to the product of two polynomials.
mul(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
mul(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
mul(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
mul(SparseMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
mul(StartingPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial
mul(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
mul(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix
mul_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
mul_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
mul_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
mul_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
mul_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
mul_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
mul_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
mul_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
mult - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
mult - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
mult - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
mult(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
mult(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
mult(double, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(float, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(int, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
mult(int, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(long, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
mult(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
mult(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
mult(CVisRGBA, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(CVisRGBA, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(CVisRGBA, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult(CVisRGBA, long) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
mult_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
mult_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult_into(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult_into(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult_into(long) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
mult_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
multButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
multFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
multFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
multFactorField - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
MULTI_SCALE - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
MULTI_SCALE_STRUCTURAL_SIMILARITY_INDEX - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
multiBox - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
multiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
multiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
multiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
multichannelColor0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColor1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColor2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColor3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColorChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColorChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColorChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelColorChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multichannelWeight - Variable in class gov.nih.mipav.model.file.FileInfoZVI
multiclass_probability(int, double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
multiclass_probability(int, double[][], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
MULTIEXPONENTIAL_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: From Exponential analysis in physical phenomena by Andrei A.
MULTIEXPONENTIAL_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
multiExponentialFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
multiFile - Variable in class gov.nih.mipav.model.file.FileInfoBase: Flag that indicates whether or not the image is in multiple files (tiff).
multiFile - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
multiFileCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
multiFileDicomButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
multiFrame - Variable in class gov.nih.mipav.model.file.FileInfoDicom: True indicates image has multiple image planes in a single file.
MultiFrameEyetrackerMode - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage
MultiGuidedFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of multi_guided_est.py by Yiqian Wang.
MultiGuidedFilter(ModelImage, ModelImage, PyWavelets.WAVELET_NAME, int, int, boolean, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
MultiHistogram - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
multiHistogramCompositeCircle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramCompositeColorMap - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramCompositeSquare - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramCompositeTriangle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramFinish - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramFunctions - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: combined GLSL code for the histogram widgets:
multiHistogramGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Multihistogram panel:
multiHistogramInitA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramInitB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramInitMap - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramInitMapColor - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramReadColorMap - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramWidgetColorParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
multiHistogramWidgetParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
MULTIHISTOMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Display the volume in Multi-histo mode.
MULTIHISTOMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Change to the Multi-histogram mode pixel shader program.
MULTIHISTOMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
MULTIHISTOMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Display the volume in Mullti-histo mode.
multiHistoSurfaceCompositeInit - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
MultiHistoWidgets - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
MultiImage - gov.nih.mipav.view.Argument.InstanceArgument
MULTILEVEL_DWT - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
MULTILEVEL_DWT - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
multiLevelDWTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
MultiPaintAutoSave - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
MultiPaintAutoSave(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.MultiPaintAutoSave: Creates a new PaintAutoSave object.
multipaintDialog - Variable in class gov.nih.mipav.view.ViewJFrameImage: reference to the JDialogMultiPaint for shortcuts
multiPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
MULTIPLICATION_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Multiplication deconvolution is based on the geometrical mean of the two estimates from A and B separately
multiply(double) - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
multiply(int, float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix: DOCUMENT ME!
multiply(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial
multiply(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is (this * y).
multiply(RenderViewBase.Matrix) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Matrix multiplication, row based. this.m = this.m * m
Multiply(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Multiply(SparseMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Multiply(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix
Multiply(VectorD, VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix
Multiply(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Multiply(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix
Multiply(VectorF, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Multiply(VectorF, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix
MULTIPLY - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
MULTIPLY - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
MULTIPLY - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
MultiplyByJacobian(double[], int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
MultiplyByJacobian(double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
MultiplyByJacobian(double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
MultiplyByJacobian(double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
multiProcessor - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
multiProcessor - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Use serialVersionUID for interoperability.
multiProcessor - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Use serialVersionUID for interoperability.
MultiResolutionBilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of multi_bilateral.py by Yiqian Wang.
MultiResolutionBilateralFilter(ModelImage, ModelImage, PyWavelets.WAVELET_NAME, int, int, boolean, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
multiscaleBlending(double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
multiThreadCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
multiThreadCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
multiThreadCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
multiThreadingEnabled - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Indicates if multi-threading will be used to optimize the algorithm.
multiThreadingEnabled - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer
multiThreadingEnabledCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Multi-Threading Enabled Check Box
multRadio - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: radio buttons for truncate/multiply *
multRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: radio buttons for truncate/multiply *
mulTransposed(libdt.Mat, libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
mutable_col_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
mutable_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
mutable_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
mutable_local_parameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
mutable_matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
mutable_matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
mutable_matrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
mutable_parameter_block_sizes() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
mutable_parameter_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
mutable_program() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
mutable_residual_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
mutable_residual_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
mutable_row_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
mutable_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
mutable_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
mutable_user_state() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
mutable_values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
mutex - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
mutex_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ExecutionSummary
muText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Volume text field.
MUTUAL_INFORMATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
MUTUAL_INFORMATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
MUTUAL_INFORMATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
MUTUAL_INFORMATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
MUTUAL_INFORMATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
MUTUAL_INFORMATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
MutualInfo(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
mutualInformation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
mutualInformation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
mutualInformation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
mutualInformation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
MutualInformation(CDVector, CDVector, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Calulates the Mutual Information (MI) between two vectors.
mutualInformationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
mutualInformationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
mutualInformationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
mutualInformationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
mutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
MV_CHUNK - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex: DOCUMENT ME!
mv3(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
mv4(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
mv5(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
mv6(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
mvnormpdf(double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
mvnormpdfln(double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
mVolume - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Total volume of triangle meshes.
mVolumeMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: Volume-Filled TriangleMesh mask.
mw1 - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
mw1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
mw2 - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
mw2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
mx - Variable in class gov.nih.mipav.model.algorithms.curev
mx - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
mX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
mxCallocInt(int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
mxCELL_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Cell array
mxCELL_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Cell array
mxCHAR_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Character array
mxCHAR_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Character array
mxDOUBLE_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Double precision array
mxDOUBLE_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Double precision array
Mxf - gov.nih.mipav.model.file.MetadataExtractor.FileType
MXHNIL_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.CVODES
mxINT16_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 16-bit, signed integer
mxINT16_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 16-bit, signed integer
mxINT32_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 32-bit, signed integer
mxINT32_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 32-bit, signed integer
mxINT64_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 64-bit, signed integer
mxINT64_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 64-bit, signed integer
mxINT8_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 8-bit, signed integer
mxINT8_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 8-bit, signed integer
MXNCF - Variable in class gov.nih.mipav.model.algorithms.CVODES
MXNEF - Variable in class gov.nih.mipav.model.algorithms.CVODES
MXNEF1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
mxOBJECT_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Object
mxOBJECT_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Object
mxSINGLE_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Single precision array
mxSINGLE_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Single precision array
mxSPARSE_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Sparse array
mxSPARSE_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Sparse array
MXSTEP_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.CVODES
mxSTRUCT_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Structure
mxSTRUCT_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: Structure
mxUINT16_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 16-bit, unsigned integer
mxUINT16_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 16-bit, unsigned integer
mxUINT32_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 32-bit, unsigned integer
mxUINT32_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 32-bit, unsigned integer
mxUINT64_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 64-bit, unsigned integer
mxUINT64_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 64-bit, unsigned integer
mxUINT8_CLASS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: 8-bit, unsigned integer
mxUINT8_CLASS - Static variable in class gov.nih.mipav.model.file.FileMATLAB: 8-bit, unsigned integer
my - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
mY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
my_addr - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec
my_coef_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_coef_controller
my_color_deconverter() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
my_convmtx2(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.NoiseLevel
MY_COST_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
my_cquantizer() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_cquantizer
my_cquantizer2() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
my_decomp_master() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_decomp_master
my_idct_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_idct_controller
my_input_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_input_controller
my_main_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_main_controller
my_marker_reader() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_marker_reader
my_memory_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_memory_mgr
MY_PERMC - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
MY_PERMR - gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t
my_post_controller() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_post_controller
my_round(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
my_sign(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
my_source_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_source_mgr
MY_THREE_PARAMETER_COST_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
my_upsampler_jdmerge() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
my_upsampler_jdsample() - Constructor for class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
MyCellRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
myContourVector - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
myContourVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
MyCostFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.MyCostFunctor
mydecimate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
myeps - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
myEyePoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Initial center viewing point of the image.
myEyePoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Initial center viewing point of the image.
myEyePoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Initial center viewing point of the image.
MyGlassPane() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane: Creates new glass pane and adds the listeners.
myGlassPanes - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Special glass panes for all the valid frames in the GUI so that the user can draw rectangles on top of objects in the GUI.
myHostImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: host image.
myobj - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
myParent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Reference to ViewJFrameSurfaceRenderer.
myParent - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: DOCUMENT ME!
myParent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Volume rendering parent frame.
myParent - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Volume rendering parent frame.
myParentPlotter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Reference to ViewJFrameSurfacePlotter.
myProgressBar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Progress bar that may be set for long optimization runs.
myProgressBar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Progress bar that may be set for long optimization runs.
MyThreeParameterCostFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.MyThreeParameterCostFunctor
MyXMLHandler - Class in gov.nih.mipav.view.dialogs: Handle events generated while parsing the XML file.
MyXMLHandler - Class in gov.nih.mipav.view.renderer.WildMagic.TBI: Handle events generated while parsing the XML file.
MyXMLHandler() - Constructor for class gov.nih.mipav.model.file.FileOME.MyXMLHandler: Create a handler to fill out the image info in the parent class from the xml header data.
MyXMLHandler() - Constructor for class gov.nih.mipav.view.dialogs.MyXMLHandler: Construct our custom XML data handler.
MyXMLHandler() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: Construct our custom XML data handler.
MyXMLHandler(FileInfoImageXML, Vector<VOI>, Vector<TransMatrix>, TalairachTransformInfo) - Constructor for class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Creates a new MyXMLHandler object.
MyXMLHandler(VOI) - Constructor for class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: Construct our custom XML data handler.
MyXMLHandler(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: Construct our custom XML data handler.
mz - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
mZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!

N

n - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.P
n - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
n - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
n - Variable in class gov.nih.mipav.model.algorithms.curev
n - Variable in class gov.nih.mipav.model.algorithms.curfit
n - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
n - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
n - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
n - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
n - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
n - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceTest: This is an implementation of the 16 test cases listed in Numerical Inversion of the Laplace Transform: a Survey of and Comparison of Methods by Brian Davies and Brian Martin, Journal of Computational Physics, Vol. 33, pp. 1- 32, 1979.
n - Variable in class gov.nih.mipav.model.algorithms.libdt.CovMatrix
n - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexOptions
n - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
n - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
n - Variable in class gov.nih.mipav.model.algorithms.Lmmin: n is a positive integer variable set to the number of variables; n must not exceed m.
n - Variable in class gov.nih.mipav.model.algorithms.LsqFit: variables integer scalar containing the number of unknowns.
n - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
n - Variable in class gov.nih.mipav.model.algorithms.NelderMead
n - Variable in class gov.nih.mipav.model.algorithms.NelderMead.simplex_t
n - Variable in class gov.nih.mipav.model.algorithms.NL2sol
n - Variable in class gov.nih.mipav.model.algorithms.NMSimplex
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
n - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
n - Variable in class gov.nih.mipav.model.algorithms.splev
n - Variable in class gov.nih.mipav.model.algorithms.sproot
n - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution
n - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Row and column dimension (square matrix).
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Row and column dimensions.
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem: the number of features (including the bias feature if bias >= 0)
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.poly
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TURN_REP_REC
n - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.turnrep
n - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
n - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
N - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
N - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
N - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
N - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
N - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
N - Variable in class gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver
N - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
N - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
N - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
N - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
N - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions
N - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
N - Variable in class gov.nih.mipav.model.algorithms.WishartVariateGenerator
N - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
N - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
N - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
N - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.MatrixEntry
N - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NMatrixEntry
N() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
N() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
N(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
n_choose_k(int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
n_events - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
N_GROUPS - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
n_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
n_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
N_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
N_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
N_ITERS - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
n_rot - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
N_VAbs_Serial(CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VAddConst_Serial(CVODES.NVector, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VClone(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VClone_Serial(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VCloneEmpty_Serial(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VCloneVectorArray_Serial(int, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VConst_Serial(double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VDestroy(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VDestroyVectorArray(CVODES.NVector[], int) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VDestroyVectorArray_Serial(CVODES.NVector[], int) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VDiv_Serial(CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VInv_Serial(CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VLinearSum_Serial(double, CVODES.NVector, double, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VMaxNorm_Serial(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VMin_Serial(CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VNew_Serial(CVODES.NVector, int) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VScale_Serial(double, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VSpace_Serial(CVODES.NVector, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VSpace_Serial(CVODES.NVector, long[], long[]) - Method in class gov.nih.mipav.model.algorithms.CVODES
N_VWrmsNorm_Serial(CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
n_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
n_W - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
N_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
N_W - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
n0 - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
N0 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver: variables integer scalar containing the number of unknowns.
N0 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N0 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
N0 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
n1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine
n1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Number of rho cells
n1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
N1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
N1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
n2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine
n2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
n2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Number of theta cells
n2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
N2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
N2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.MockCostFunctionBase2
N2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
N2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
n3 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
N3 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N3 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DummyCostFunction3
N3Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
N4 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N4Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
N4Step(double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly
N5 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N6 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N7 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N8 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
N9 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
NACondenser - Variable in class gov.nih.mipav.model.file.FileInfoCZI
nads - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
name - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
name - Variable in class gov.nih.mipav.model.algorithms.NL2sol
name - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
name - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta: < File protocol
name - Variable in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
name - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
name - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo: The real world DICOM tag name.
name - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Name of investigator.
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Group: Attributes.
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: attributes.
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.StageLabel
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Project: Attributes.
name - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Screen
name - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
name - Variable in class gov.nih.mipav.model.file.FileMincAttElem: DOCUMENT ME!
name - Variable in class gov.nih.mipav.model.file.FileMincDimElem: DOCUMENT ME!
name - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
name - Variable in class gov.nih.mipav.model.file.FileUtility.nameSliceItem
name - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler
name - Variable in class gov.nih.mipav.model.file.FileXML.XMLAttributes
name - Variable in class gov.nih.mipav.model.file.XMLParameter: Parameter name.
name - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: add simple image name for AAM model only.
name - Variable in class gov.nih.mipav.model.structures.VOI: Name of the VOI stored as a string.
name - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
name - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: Name for the view.
name - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Name of the events.
name - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView.TabbedItem: DOCUMENT ME!
name - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Name of surface displayed in list box.
name - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView.TabbedItem: DOCUMENT ME!
name - Variable in class gov.nih.mipav.view.renderer.MouseEventVector: Name of the events.
name - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.TabbedItem: Panel name
name - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
name - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MipavMenuItem: DOCUMENT ME!
Name - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams
Name - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
Name - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: Get the console mode name
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: name of optimization methode
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: name of optimization method
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: name of optimization methode
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: name of optimization method.
Name() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: name of optimization method
name_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScopedExecutionTimer
NAME_ACTION_APPEND - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The value that can be used with the 'image_name_action' parameter to indicate that the 'new_image_name' parameter should be appended to the current image name.
NAME_ACTION_PREPEND - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The value that can be used with the 'image_name_action' parameter to indicate that the 'new_image_name' parameter should be prepended to the current image name.
NAME_ACTION_REPLACE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The value that can be used with the 'image_name_action' parameter to indicate that the current image name should be replaced with the 'new_image_name' parameter value.
nameArray - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
nameChangeVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Used by name change dialog to change name of the selected item.
nameChangeVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Used by name change dialog to change name of the selected item.
namedSeamCellOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
nameField - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: NameField that will contain the string to be displayed.
nameField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
nameField - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text field for user inputed name
nameField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: NameField that will contain the string to be displayed.
nameField - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
nameField - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
names - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
names - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
names - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
nameSliceComparator() - Constructor for class gov.nih.mipav.model.file.FileUtility.nameSliceComparator
nameSliceItem(String, int) - Constructor for class gov.nih.mipav.model.file.FileUtility.nameSliceItem
nameSQ - Variable in class gov.nih.mipav.model.file.FileDicom: Name of the sequence tag.
namesTable - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
nameStr - Variable in class gov.nih.mipav.model.file.FileInfoTMG: DOCUMENT ME!
NameStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML: array of strings representing the tags under in the Gifti xml schema.
nameString - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
nameString - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
nameTable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
nameTableImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
nameTableImagesCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
nameTableImagesMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
nameText - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
nameValue - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Name and property labels that describe a DICOM tag for a particular file
nameValueSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Name and property labels that describe a DICOM tag for a particular file
nameVOI_GT_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
nameVOI_GT_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
NaN - Static variable in class gov.nih.mipav.util.DoubleDouble: A value representing the result of an operation which does not return a valid number.
NaNCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
NANOMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement nanometers.
NANOMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement nanometers.
NANOMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - nanometers.
NANOSEC - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement nanoseconds.
NANOSEC - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement nanoseconds.
NANOSEC_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - nanoseconds.
NARCS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
NARM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
nArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Number of basis functions in each dimension.
NARROW_BAND_2D - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Diffusion models.
NARROW_BAND_2D - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: Diffusion models.
nativeClone() - Method in class gov.nih.mipav.model.structures.ModelSerialCloneable: Does not use serialization for cloning, exists for performance comparison and shallow copies.
NativeLibraryLoader - Class in gov.nih.mipav.util: Static methods for extracting and loading native libraries that were previously loaded directly in the MIPAV JRE.
NativeLibraryLoader() - Constructor for class gov.nih.mipav.util.NativeLibraryLoader
NATURAL - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
NATURAL - Static variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
NATURAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
natural_order - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
naturalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
navigation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Detach and attach the probe root branch group.
navigationBehavior - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: navigation behavior.
NavigationBehavior - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation: Behavior which allows for flying down a specified path and looking around.
NavigationBehavior(VolumeTriPlanarRender, Camera) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
NavigationBehavior.BranchState - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation: Branch information.
NavigationBehavior.Callback - Interface in gov.nih.mipav.view.renderer.WildMagic.Navigation: Instances which want to be notified of updates to this behavior should implement this interface by providing the viewChanged method implementation.
NavigationBehavior.KeyPressedEvent - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation
NavigationBehavior.MouseWheelMouseControl - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation
NavigationBehavior.MouseWheelPathPlanning - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation
NavigationBehavior.RightMouse - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation
navigationCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Navigation (fly-thru) checkbox
navigationGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Navigation mode user-interface panel
NavigationPicker - Class in gov.nih.mipav.view.renderer.WildMagic.Navigation: Navigation fly-thru mode picker, which pick the fly-thru direction.
NavigationPicker() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker
naviPicker - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
nb - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
nb - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
nb - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
nb - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
nb - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
Nb - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
nb_of_tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t
nb_packet - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: packet number
nb_precision - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters
nb_tile_to_decode - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: Nb of tile to decode
nb_tile_to_decode - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: Nb of tile to decode
nb_tps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: number of tile parts
nbands - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SigSet
NBands() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the number of bands in the model
NBands() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
nbandsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
nbdtr(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
NBDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
nbdtrc(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
NBDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
nbdtri(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
NBDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
nbinom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nbins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
nbins - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
nBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
nBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
nBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Number of histogram bins for shrunken buffer.
NBINS_AZ - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
NBINS_PO - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
nbinsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
nbinsText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
nBits - Variable in class gov.nih.mipav.model.file.FileSVS
nBits - Variable in class gov.nih.mipav.model.file.FileTiff
nBitsMask - Variable in class gov.nih.mipav.model.file.FileSVS
nBitsMask - Variable in class gov.nih.mipav.model.file.FileTiff
nBlocksRandomised - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
nbnd - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
NBO - Variable in class gov.nih.mipav.model.algorithms.SIFT
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
nBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
NBP - Variable in class gov.nih.mipav.model.algorithms.SIFT
nBrainVoxels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: The number of voxels that define the brain.
nbrpoolcpos - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
nbrpoolreallocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
nbrpoolsize - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
NBUCKS - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
nbx - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
nbx - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: number of paint masks initially.
nby - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: number of paint masks initially.
nbytes - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mop_t
nBytesPerVoxel - Variable in class gov.nih.mipav.model.file.FileCheshire: DOCUMENT ME!
nc - Variable in class gov.nih.mipav.model.algorithms.curev
nc - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
nc - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The number of layers/components
nC - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
NC_ATTRIBUTE - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - attribute.
NC_BYTE - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - byte.
NC_CHAR - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - character.
NC_DIMENSION - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - dimension.
NC_DOUBLE - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - double.
NC_FLOAT - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - float.
NC_INT - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - integer.
NC_SHORT - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - short.
nc_type - Variable in class gov.nih.mipav.model.file.FileMincAttElem: DOCUMENT ME!
nc_type - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
NC_VARIABLE - Static variable in class gov.nih.mipav.model.file.FileInfoMinc: NetCDF defined data type - variable.
ncAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
NCandidates() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
NCformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
nChecked - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
nchoosek(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
nClass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
nClass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
nClass - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
nclasses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SigSet
nClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
nClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
nClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
nClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
nClasses - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ncmds - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
ncol - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix
ncolors - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
nColors - Variable in class gov.nih.mipav.model.structures.ModelLUT: Number of colors in the LUT.
nColors - Variable in class gov.nih.mipav.model.structures.ModelRGB: Number of colors in the LUT.
nColors - Variable in class gov.nih.mipav.view.dialogs.JDialogNColors: DOCUMENT ME!
Ncolors - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
nColorsATextF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Update check box.
nColorsATextF - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
nColorsBTextF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Update check box.
nColorsBTextF - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
nColorsTextF - Variable in class gov.nih.mipav.view.JPanelHistogram: displays the number of colors in the LUT
ncols - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
NCols() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
nColumn - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: in 4D row and column numbers for z slices
nColumn - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
nColumn - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
nColumn - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
nColumnCheckers - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: The number columns when two images are displayed in the checker board mode.
ncolumnsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
ncomp - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW
ncon - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
ncon - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
NCPformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
ncust_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
ncuts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
nd - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
Nd - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
nd1 - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
nd2 - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
ndarData - Variable in class gov.nih.mipav.model.file.FileWriteOptions
NDARWriteData - Class in gov.nih.mipav.model.file
NDARWriteData() - Constructor for class gov.nih.mipav.model.file.NDARWriteData
NDataItems() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the number of data items this basis is based on.
ndFilter - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
NDFilter - Variable in class gov.nih.mipav.model.file.FileInfoCZI
ndim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Number of dimensions.
ndim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Number of dimensions.
ndim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
ndim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
ndim - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo
nDim - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Number of available dimension.
NDIM_2 - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
NDIM_3 - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
NDIM_4 - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
NDIM_5 - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
NDIM_6 - gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements
nDimensions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
nDimensions - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
nDimensions - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
nDimensions - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
ndims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
ndims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Degress of freedom.
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Degress of freedom.
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Degress of freedom.
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Degress of freedom.
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: The number of dimensions.
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nDims - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
nDims - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
nDims - Variable in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
nDims - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: number of dimensions.
nDims - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: number of dimensions.
nDims - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
nDims - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
nDims - Variable in class gov.nih.mipav.model.file.FileMetaImage
nDims - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Number of dimensions of the image.
nDims - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Number of dimensions of the data.
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Image dimension, must be 3.
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
nDims - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
ndin - Variable in class gov.nih.mipav.model.algorithms.Integration2: After the first integration over the intervals (pts[i], pts[i+1]), i = 0, 1, ..., npts2 - 2, the error estimates over some of the intervals may have been increased artificially, in order to put their subdivision forward.
ndin - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: After the first integration over the intervals (pts[i], pts[i+1]), i = 0, 1, ..., npts2 - 2, the error estimates over some of the intervals may have been increased artificially, in order to put their subdivision forward.
nDirEntries - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
nDirEntries - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
nDirEntries - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ndof - Variable in class gov.nih.mipav.model.file.FileAfni: FUNC_FT_TYPE F ratio Numerator DOF, Denominator DOF.
ndtr(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
NDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ndtri(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
NDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ne(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
Ne(double, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise not equal to.
Ne(double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Not Equal - compares a double and a vector.
Ne(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Element wise not equal to.
Ne(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Not Equal - compares a vector and a vector.
NEAR_SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
nearBoundPoint - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag used to indicate if the cursor is near a point on the VOI bounding box.
nearBoundPoint(VOIBase, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Calculates the bounding box of the voi contour and returns true if the input point is near the bounding box.
NearBoundPoint - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
nearBoundsPoint(int, int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Returns true if mouse point is close to bounds point.
nearest - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Radio buttons for interpolation methods.
NEAREST - gov.nih.mipav.view.Preferences.InterpolateDisplay: Displays using nearest-neighbor
NEAREST - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate nearest neighbor interpolation.
NEAREST - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Action command for nearest neighbor interpolation.
NEAREST_BOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Nearest neighbor interpolation applied to both images
NEAREST_NEIGHBOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Nearest neighbor interpolation.
NEAREST_NEIGHBOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Nearest neighbor interpolation.
NEAREST_NEIGHTBOR - Static variable in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.InterpolationType
nearestPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
nearLine(int, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Tests if a point is near a line.
nearLine(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if the input position is near the outline of this contour.
nearLine(int, int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Returns true if the input position is near the outline of this contour.
nearLine(int, int, VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Tests if a point is near the curve.
nearLine(VOIBase, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called when the user is selecting a VOI or during MouseDrag to show if a VOI can be selected, or for selected VOIs, to show if the Mouse is close enough to the contour for the user to add a point to the contour line.
NearLine - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
NearNone - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: VOI contour near status:
nearPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
nearPoint - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag used to indicate if the cursor is near a point of the VOI member.
nearPoint(int, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Tests if a point is near a point.
nearPoint(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIPoint: Returns true if the input position is near one of the points on this contour.
nearPoint(int, int, VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
nearPoint(VOIBase, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called when the user is selecting a VOI or during MouseDrag to show if a VOI can be selected, or for selected VOIs, to show if the Mouse is close enough to one of the points on the contour for the user to move that contour point
NearPoint - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
NEARW(int, int, double[][], double[][], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
NEARZ(int, int, double[][], double[][], double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
nebroyuf(double[][], double[], double[], double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.NESolve
nechdcmp(double[][], double[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.NESolve
nEchoes - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 210 number of echoes.
neconest(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
ned - Variable in class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t
ned - Variable in class gov.nih.mipav.model.structures.jama.METIS.vnbr_t
nedges - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
nedges - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
nEdges_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
need_context_rows - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
need_context_rows - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
needBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
needBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
needs_zeroed - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
needsUpdate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
needsUpdate(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
needUpdate() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
Nef - gov.nih.mipav.model.file.MetadataExtractor.FileType: Nikon camera raw.
nefdjac(double[][], int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
nefn(double[], double[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
neg() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
neg(double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NEG - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType
NEG - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType
negate() - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is -this.
negate() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
negate() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Negate(Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
NEGATIVE_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Mark negative areas of the laplacian image as edges (makes thicker edges - used in BSE).
NEGATIVE_EDGES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Mark negative areas of the laplacian image as edges (makes thicker edges - used in BSE).
negative_gradient_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
NEGATIVE_INFINITY - Static variable in class gov.nih.mipav.util.DoubleDouble
negativeAccepted - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
negativeCurvatureNeeded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
negativeHysteresisFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
negativeSpeed - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
negclamp - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
negclamp - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
negInterchangeXY - Variable in class gov.nih.mipav.model.file.FileSVS
negInterchangeXY - Variable in class gov.nih.mipav.model.file.FileTiff
negScanSpacing - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 858 Negative scan spacing for overlap slices.
negXCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
negYCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
negZCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
NEHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
nehook(int[], double[], double[], double[], boolean[], double[], double[], int[], double[], double[], double[], double[][], double[][], double[], double[], double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
neigh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
neigh_cmp(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
neigh_sort(LocalIntensityOrderPattern.VlLiopDesc, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
neigh_sort_recursive(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
neigh_swap(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
neighbor(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Neighbor() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
Neighbor(LODMesh.Triangle) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
neighbor_edge(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
neighbor_edge_3D(int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
neighbor_node_edge(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
neighborF - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
neighborGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
neighborI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
neighborKey - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NeighborKey - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
NeighborKey() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey
neighborKey2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NeighborKey2 - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
NeighborKey2() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey2
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: DOCUMENT ME!
neighborPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: DOCUMENT ME!
neighbors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
neighbors - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
neighbors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey
neighbors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey2
neighbors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors
neighbors - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors2
Neighbors - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Neighbors() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors
Neighbors(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
Neighbors(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
NEIGHBORS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
NEIGHBORS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
Neighbors2 - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Neighbors2() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Neighbors2
neighbors2DGreatest(float, float[], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet
neighbors2DLeast(float, float[], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet
neighbors3DGreatest(float, float[], int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet
neighbors3DLeast(float, float[], int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet
neighborText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
neighborV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
neighbourLink - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
neighbourLink - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
neighbours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
neighbours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
neighbours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
neighIntensities - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc: < Point to neighbour radius (distance).
neighPermutation - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
neighRadius - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
neighSamplesX - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
neighSamplesY - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
neinck(double[], double[], double[], int[], double[], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.NESolve
nel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
nel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
nelder_mead(NelderMead.point_t, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead
NelderMead - Class in gov.nih.mipav.model.algorithms: Nelder-Mead original code copyright 2017 by Matteo Maggioni under the MIT Licence.
NelderMead(int, double[], double, double, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.NelderMead
NelderMead.param_t - Class in gov.nih.mipav.model.algorithms
NelderMead.point_t - Class in gov.nih.mipav.model.algorithms
NelderMead.pointComparator - Class in gov.nih.mipav.model.algorithms
NelderMead.simplex_t - Class in gov.nih.mipav.model.algorithms
nelems - Variable in class gov.nih.mipav.model.file.FileMincAttElem: DOCUMENT ME!
nelems - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
NEList() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
NEList(LODMesh.Edge) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
nell - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
nelnsrch(int[], double[], double[], double[], boolean[], int[], double[], double[], double, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
NelsonCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.NelsonCostFunction
NelsonData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
NelsonObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
nemodel(double[][], double[][], double[], double[], double[][], double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.NESolve
nEndFrameDec - Variable in class gov.nih.mipav.model.file.FileJP2
nenmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NENMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nentries - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Entires to nodes
nEPI - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 826 number of EPI shots.
neqn - Variable in class gov.nih.mipav.model.algorithms.ODE
neqn - Variable in class gov.nih.mipav.model.algorithms.ODEEP
neqrdcmp(double[][], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
neqrsolv(double[], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
nersolv(double[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
NESolve - Class in gov.nih.mipav.model.algorithms: This is a port of nesolve.m and supporting files coded in MATLAB by Richard T.
NESolve() - Constructor for class gov.nih.mipav.model.algorithms.NESolve
NESolve(boolean, double[], double[], boolean, double[][], Vector<Double>, double[], int, int, int, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.NESolve
nest - Variable in class gov.nih.mipav.model.algorithms.curfit
nesterov_func_type - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
nesterov_maxit - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
nesterov_mnls(int[], double[], Matrix, Matrix, Matrix, int, String) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nestop(int[], int[], double[], double[], double[], double[], double[], double[], double[], int, double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.NESolve
nesw - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true northeast-southwest direction calculated.
nesw - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true northeast-southwest direction calculated.
nesw - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
nesw - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
neswCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
neswCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
NETail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
netrust(double[], double[], double[], boolean[], int[], double[], double[], double[], double[], int[], double[], double[], double[], double[][], double[], double[], double[], boolean, int, double[][], boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.NESolve
network - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
NetworkSnake() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
Neumann - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
Neumann - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
neumann_bc(int, int, boolean[]) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Neumann boundary condition test
NeuralNetwork(ArrayList<Double[]>, ArrayList<Double>, String, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
neuriteColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
neuriteCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
neuriteData - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
neuriteDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
neuriteList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
neuriteNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
neuriteOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
neuriteSurfaces - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
neuriteTabbedPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
neuriteVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
neurologicalView - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
Neuron() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
Neuroncounter - Variable in class gov.nih.mipav.model.algorithms.Backpropagation
neval - Variable in class gov.nih.mipav.model.algorithms.Integration2: Number of integrand evaluations.
neval - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Number of integrand evaluations.
NEW - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: NEW indicates a new image is created after the algorithm is run.
NEW - Static variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: NEW indicates a new image is created after the algorithm is run.
new_color_map - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
new_color_map - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
NEW_COLOR_MAP_1_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg
NEW_COLOR_MAP_2_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg
new_evaluation_point - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
new_num_nonzeros - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
new_num_nonzeros - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
NEW_POINT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
NEW_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileLSM: TIFF Tags.
NEW_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileSTK: TIFF Tags.
NEW_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileSVS: Tiff Tags.
NEW_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileTiff: Tiff Tags.
NEW_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates that a VOI has just been created, is not related to the various possible VOI modes that the handler deals with
newAdjImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: new adjusted image.
newAdjustedCreated() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: tells if new adjusted image was created during run().
newAlphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
newAlphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
newArrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Size of zero padded buffers.
newArrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Size of zero padded buffers.
newArrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
newArrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
newArrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newBase - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
newBitFlag() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
NewBitFlag() - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
newBoolean(String, boolean) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new boolean parameter with a given label and value.
newButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: This button add at head of the list.
newButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: This button add at head of the list.
newChannelMap(int[]) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
newCompressionType - Variable in class gov.nih.mipav.model.file.FileAvi: 2 for .mov, 3 for mjpeg, 4 for mp4v2.
NEWDG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
newDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
newDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Zero padded dimension sizes.
newDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Zero padded dimension sizes.
newDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
newDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
newDouble(String, double) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new double precision parameter with a given label and value.
newDTIparams - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
newEdge(FrontEdge) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
newEdgeFollow(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
newElements(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator: This method returns a pointer to an array of elements objects.
newEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
neweps - Variable in class gov.nih.mipav.model.algorithms.Quaternions
newExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newExtents - Variable in class gov.nih.mipav.model.file.FileMinc
newExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The extents of transformed (to the power of 2) image
newExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
newExtents - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
newExtents - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
newExternalImage(String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new externally-specified image placeholder variable parameter with a given label and value (e.g., '$image1').
newFile(String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new file parameter with a given label and value.
newFloat(String, float) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new floating point parameter with a given label and value.
newFrameBeenCreated() - Method in class gov.nih.mipav.view.ViewJFrameBase
newFrameCreated - Variable in class gov.nih.mipav.view.ViewJFrameBase
newGrayScale - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
newHeight - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator: Height of new image in pixels
NEWHL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
newHysteresisTr(float[], float[], AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList, int, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: new image radio button.
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: generate new image
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Radio buttons for alg output options.
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
newImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
newImage - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
newImage(String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new image placeholder variable parameter with a given label and value (e.g., '$image1').
newImage(String, String, boolean) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new image placeholder variable parameter with a given label and value (e.g., '$image1').
newImageDestination - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: flags for destination, threshold, inverse, and color image
newImageDestination - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: flags for destination and threshold
newImageName - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
newImagePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
newImageRadio - Variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: DOCUMENT ME!
newImageRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: radio buttons
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
newImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
newImDTIparams - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices
newInputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: DOCUMENT ME!
newInstance() - Static method in class gov.nih.mipav.view.FileSelectorImpl
newInstance(URL[]) - Static method in class gov.nih.mipav.plugins.JarClassLoader
newInt(String, int) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new integer parameter with a given label and value.
newKeyLog() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates a new keylog, writing which tags are to be removed from the image information; the table header for the image read/write logging is added. the string created here is not automatically turned into the keylog string.
newLabelList(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Purpose: unknown.
newlen - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
newList() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
newLong(String, long) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new long integer parameter with a given label and value.
newLZW - Variable in class gov.nih.mipav.model.file.FileSVS
newLZW - Variable in class gov.nih.mipav.model.file.FileTiff
newMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: DOCUMENT ME!
newMask - Variable in class gov.nih.mipav.model.algorithms.FloodFill: DOCUMENT ME!
newMax - Variable in class gov.nih.mipav.model.file.FileNIFTI: When the image data is rescaled by y = scl_slope * x + scl_inter, the image minimum or image maximum is rescaled to newMax.
newMin - Variable in class gov.nih.mipav.model.file.FileNIFTI: When the image data is rescaled by y = scl_slope * x + scl_inter, the image minimum or image maximum is rescaled to newMin.
newmsWait - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
newmsWait - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
newNonListParameter(String, int, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new parameter with a given label and value.
newNonMaxSupress(float[], float[], float[], float[], float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
newNonOptimizedFilter(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
newNumIm - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
newOptimizedFilter1(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
newOptimizedFilter2(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
newOr - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newOr - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
newOrientBox - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newOrientBoxX - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newOrientBoxY - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newOrientBoxZ - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newOrientTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
newParameter(String, boolean) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new boolean parameter with a given label and value.
newParameter(String, boolean[]) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new ParameterList of ParameterBooleans from an array of booleans.
newParameter(String, double) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new double precision parameter with a given label and value.
newParameter(String, double[]) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new ParameterList of ParameterFloats from an array of doubles.
newParameter(String, float) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new floating point parameter with a given label and value.
newParameter(String, float[]) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new ParameterList of ParameterFloats from an array of floats.
newParameter(String, int) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new integer parameter with a given label and value.
newParameter(String, int[]) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new ParameterList of ParameterInts from an array of ints.
newParameter(String, long) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new long integer parameter with a given label and value.
newParameter(String, short) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new signed short parameter with a given label and value.
newParameter(String, Object) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new parameter with a given label and value.
newParameter(String, Object[]) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new parameter with a given label and value.
newParameter(String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new string parameter with a given label and value.
newPointIndex - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
newProgressValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
NEWQU - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
newReferenceCreated() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: tells if new reference image was created during run().
newRefImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: new reference image.
newRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
newRes - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Resample resolutioin corresponding to Power of 2.
newRes - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Resample resolutioin corresponding to Power of 2.
newResol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
newSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: This represents the button the user selects to..initally at 1
newSharedCanvas() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
newShort(String, short) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new signed short parameter with a given label and value.
newShortMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Reference to short mask.
newSliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
newSliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
newSliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
newSliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
newSliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
newString(String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new string parameter with a given label and value.
newTagButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Button for inserting new tags
newTargetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: New target transform.
newTargetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: New target transform.
newThick - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
newTimeStepVolume - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Volume for each time step.
newToOld() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
newType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Indicates the new data type which the image should be converted to.
newunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
newunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
newUShort(String, short) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new unsigned short parameter with a given label and value.
newValue - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
newVOI - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
newVOI(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Initiate a new VOI.
newVOI(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
newVOI(float) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Initiate a new VOI.
newVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
newVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
newVolSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
newVolSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
newWidth - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator: Width of new image in pixels
newX - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
newX - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
newX - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: adjustable slice VOI.
newXDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
newXDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
newXDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newXLength - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
newXY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newY - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
newY - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
newY - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: adjustable slice VOI.
newYDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
newYDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
newYDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newYLength - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
newZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: New Z dimension.
newZDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
newZDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
newZDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
newZStart - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
nex - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
nex - Variable in class gov.nih.mipav.model.algorithms.NL2sol
NEX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 218 Number of excitations.
next - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
next - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct
next - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
next - Variable in class gov.nih.mipav.model.algorithms.KDTree.res_node
next - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache.head_t
next - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
next - Variable in class gov.nih.mipav.model.file.FileSVS
next - Variable in class gov.nih.mipav.model.file.FileTiff
next - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
next - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
next - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
next - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
next - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
next - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
next - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.it_node
next - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.lmt_node
next - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
next - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.vertex_node
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
next - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache.head_t
next() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator
next() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
next(IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
next(LODMesh.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
next(LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
next(LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
next(LODMesh.Triangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
next(LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
Next(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
next_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
next_addr - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec
next_bound - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
next_buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
next_buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
next_char() - Method in class gov.nih.mipav.model.algorithms.LSCM.Parser
next_event() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
next_h_state - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
NEXT_INDEX(int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
next_marker(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
next_restart_num - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
next_row - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
next_row_out - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
next_t() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
nextBits - Variable in class gov.nih.mipav.model.file.FileSVS
nextBits - Variable in class gov.nih.mipav.model.file.FileTiff
nextBits - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
nextBranch(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
nextButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: DOCUMENT ME!
nextByteMoreSignificant - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
nextByteMoreSignificant - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
nextData - Variable in class gov.nih.mipav.model.file.FileSVS
nextData - Variable in class gov.nih.mipav.model.file.FileTiff
nextData - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
NextDirection(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
NextDirection(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LBFGS
NextDirection(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirection
NextDirection(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradient
NextDirection(CeresSolver.LineSearchMinimizer.State, CeresSolver.LineSearchMinimizer.State, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SteepestDescent
nextFreeEntry - Variable in class gov.nih.mipav.model.file.FileSVS
nextFreeEntry - Variable in class gov.nih.mipav.model.file.FileTiff
nextImage - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: DOCUMENT ME!
nextImage - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: DOCUMENT ME!
nextImage - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: DOCUMENT ME!
nextLeaf(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
nextMarker(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Gets the next marker in the header.
nextMaskList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
nextMaskList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
nextNode(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
nextone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
nextOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
nextOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
nextPageButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: elements of paging toolbar.
nextPageMenuItem - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
nextPowerOfTwo(int) - Static method in class gov.nih.mipav.util.MipavMath: Calculates and returns the integer >= input value that is an exact power of two.
nextRestartNum - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Numbers needed for restart.
Nexts(Face, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
nextTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
nextTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
nextTriangle(TriangleIndex, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
nextz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < z location for next frame added.
nf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: DOCUMENT ME!
nf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Formatting for float values into strings.
nf - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
nf - Variable in class gov.nih.mipav.model.structures.jama.LUSOL
nf - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
nf - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
nf - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
nf - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
nf - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
Nf - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
Nfa_phase0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
Nfa_phase180 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
nfc - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
nfc - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
nfc - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
nfc - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
nfe - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
nfeDQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
nfev - Variable in class gov.nih.mipav.model.algorithms.Lmmin: actual number of iterations
nFirst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: nfirst injection TR index of input dataset (0 - 1000) Number of TRs before Gd injection
nFirst - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
nFirstMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
nFirstMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
nFrames - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
nframesField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
nfrm - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
nfrm - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
nftry - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nfx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nfy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nfz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
ngrid2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
NH - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
nhcust_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
NHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
NHIST_PER_DIM - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ni - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
Ni - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
nid - Variable in class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t
NIFTI - gov.nih.mipav.model.algorithms.SIFT3D.im_format
NIFTI - Static variable in class gov.nih.mipav.model.file.FileUtility: NIFTI format. extension: .img, .hdr, .nii
NIFTI_ECODE_AFNI - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: ASCII XML-ish elements
NIFTI_ECODE_B_VALUE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: A B_Value field contains a single 32-bit floating point value representing a diffusion-weighing b-value in units of s/mm-squared.
NIFTI_ECODE_CARET - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI
NIFTI_ECODE_COMMENT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Plain ASCII text only
NIFTI_ECODE_DT_COMPONENT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The contents of a DT_COMPONENT field are a set of 32-bit integers which specify the indices of a single diffusion tensor component.
NIFTI_ECODE_MIND_IDENT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The contents of a MIND_IDENT field are character data which serve to identify the type of DWI data structure represented by the MIND extended header fields whcih follow.
NIFTI_ECODE_SHC_DEGREEORDER - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The SHC_DEGREEORDER field specifies the degree (l) and order (m) of a spherical harmonic basis function as a pair of 32-bit integers, with the degree preceding the order. m can take values between -l and +l, inclusive.
NIFTI_ECODE_SPHERICAL_DIRECTION - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: A SPHERICAL_DIRECTION field contains two 32-bit floating point values which represent a direction in spherical coordinates.
NIFTI_EXTENSION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for the parameter indicating whether .nii or .hdr/.img is used in nifti file writes
NIFTI_FIRST_STATCODE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Smallest intent code that indicates a statistic.
NIFTI_INTENT_BETA - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Beta distribution (2 params): p1 = a, p2 = b Density (x) proportional to x^(a-1) * (1-x)^(b-1).
NIFTI_INTENT_BINOM - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Binomial distribution (2 params): p1 = number of trials, p2 = probability per trial Prob(x) = (p1 choose x) * p2^x * (1-p2)^(p1-x), for x = 0,1,...p1.
NIFTI_INTENT_CHI - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Chi distribution (1 param): p1 = DOF Density (x) proportional to x^(p1-1) * exp(-x^2/2) for x > 0 p1 = 1 = 'half normal distribution p1 = 2 = Rayleigh distribution p1 = 3 = Maxwell_Boltzmann distribution.
NIFTI_INTENT_CHISQ - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Chi-squared (1 param): p1 = DOF Density(x) proportional to exp(-x/2) * x^(p1/2 - 1).
NIFTI_INTENT_CHISQ_NONC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Noncentral chi-squared statistic (2 params): p1 = DOF, p2 = noncentrality parameter.
NIFTI_INTENT_CORREL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Correlation coefficient R (1 param): p1 = degrees of freedom R/sqrt(1-R*R) is t-distributed with p1 DOF.
NIFTI_INTENT_DIMLESS - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Dimensionless value - no params - although, as in _ESTIMATE the name of the parameter may be stored in intent_name.
NIFTI_INTENT_DISPVECT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each voxel is to be taken as a displacement field or vector: Dataset must have a 5th dimension dim[5] must be the dimensionality of the displacement vector (e.g., 3 for spatial displacement, 2 for in-plane).
NIFTI_INTENT_ESTIMATE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The value at each voxel is an estimate of some parameter The name of the parameter may be stored in intentName.
NIFTI_INTENT_EXTVAL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Extreme value type I (2 params): p1 = location, p2 = scale cdf(x) = exp(-exp(-(x-p1)/p2)).
NIFTI_INTENT_FTEST - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Fisher F statistic (2 params): p1 = numerator DOF, p2 = denominator DOF.
NIFTI_INTENT_FTEST_NONC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Noncentral F statistic (3 params): p1 = numerator DOF, p2 = denominator DOF, p3 = numerator noncentrality parameter.
NIFTI_INTENT_GAMMA - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Gamma distribution (2 params): p1 = shape, p2 = scale Density (x) proportional to x^(p1-1) * exp(-p2*x).
NIFTI_INTENT_GENMATRIX - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To store an M x N matrix at each voxel Dataset must have a 5th dimension (dim[0] = 5 and dim[5] > 1) dim[5] must be M*N intentP1 must be M (in float format) intentP2 must be N (in float format) the matrix values A[i][j] are stored in row order: A[0][0] A[0][1] ...
NIFTI_INTENT_INVGAUSS - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Inverse Gaussian (2 params): p1 = mu, p2 = lambda Density (x) proportional to exp(-p2*(x-p1)^2/(2*p1^2*x)) / x^3 for x > 0.
NIFTI_INTENT_LABEL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The value at each voxel is an index into some set of labels The filename with the labels may be stored in auxFile.
NIFTI_INTENT_LAPLACE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Laplace distribution (2 params): p1 = location, p2 = scale Density (x) proportional to exp(-abs(x-p1)/p2).
NIFTI_INTENT_LOG10PVAL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Data is log10(p-value) (no params).
NIFTI_INTENT_LOGISTIC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Logistic distribution (2 params): p1 = location, p2 = scale Density (x) proportional to sech^2((x-p1)/(2*p2)).
NIFTI_INTENT_LOGPVAL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Data is ln(p-value) (no params).
NIFTI_INTENT_NEURONAME - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The value at each voxel is an index into the NeuroNames labels set.
NIFTI_INTENT_NODE_INDEX - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the value at each location is a node index, from a complete surface dataset.
NIFTI_INTENT_NONE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Default, no intent indicated.
NIFTI_INTENT_NORMAL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Normal distribution (2 params): p1 = mean, p2 = standard deviation.
NIFTI_INTENT_POINTSET - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each voxel is really a spatial coordinate (e.g., the verticies or nodes of a surface mesh): dim[0] = 5 dim[1] = number of points dim[2] = dim[3] = dim[4] = 1 dim[5] must be the dimensionality of space (e.g., 3 => 3D space) intentName may describe the object these points come from (e.g., "pial", "gray/white", "EEG", "MEG").
NIFTI_INTENT_POISSON - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Poisson distribution (1 param): p1 = mean Prob(x) = exp(-p1) * p1^x/x!
NIFTI_INTENT_PVAL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Data is a 'p-value' (no params).
NIFTI_INTENT_QUATERNION - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each voxel is a quaternion: Dataset must have a 5th dimension dim[0] = 5 dim[5] = 4 dataType should be a floating point type.
NIFTI_INTENT_RGB_VECTOR - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each location is an RGB triplet, of whatever type. - dataset must have a 5th dimension - dim[0] = 5 - dim[1] = number of nodes - dim[2] = dim[3] = dim[4] = 1 - dim[5] = 3
NIFTI_INTENT_RGBA_VECTOR - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each location is a 4 valued RGBA vector, of whatever type. - dataset must have a 5th dimension - dim[0] = 5 - dim[1] = number of nodes - dim[2] = dim[3] = dim[4] = 1 - dim[5] = 4
NIFTI_INTENT_SHAPE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the value at each location is a shape value, such as the curvature.
NIFTI_INTENT_SYMMATRIX - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To store an NxN symmetric matrix at each voxel Dataset must have a 5th dimension dim[5] must be N*(N+1)/2 intentP1 must be N (in float format) The matrix values A[i][j] are stored in row order A[0][0] A[1][0] A[1][1] A{2][0] A[2][1] A[2][2].
NIFTI_INTENT_TIME_SERIES - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that each value at each location is from a time series.
NIFTI_INTENT_TRIANGLE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: To signify that the vector value at each voxel is really a triple of indexes (e.g., forming a triangle) from a pointset dataset: Dataset must have a fifth dimension dim[0] = 5 dim[1] = number of triangles dim[2] = dim[3] = dim[4] = 1 dim[5] = 3 dataType should be an integer type (preferably DT_INT32) The data values are indexes (0,1,...) into a pointset dataset.
NIFTI_INTENT_TTEST - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Student t statistic (1 param): p1 = DOF.
NIFTI_INTENT_TTEST_NONC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Noncentral t statistic (2 params): p1 = DOF, p2 = noncentrality parameter.
NIFTI_INTENT_UNIFORM - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Uniform distribution: p1 = lower end, p2 = upper end.
NIFTI_INTENT_VECTOR - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: DOCUMENT ME!
NIFTI_INTENT_WEIBULL - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Weibull distribution (3 params): p1 = location, p2 = scale, p3 = power Density (x) proportional to ((x-p1)/p2)^(p3-1) * exp(-((x-p1)/p2)^p3) for x > p1.
NIFTI_INTENT_ZSCORE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Standard normal (0 params): Density = N(0,1).
NIFTI_LAST_STATCODE - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Largest intent code that indicates a statistic.
NIFTI_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: NIFTI multi-file format.
NIFTI_SLICE_ALT_DEC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Alternating decreasing pattern of slice acquisition slice timing starts at slice_end
NIFTI_SLICE_ALT_DEC2 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Alternating decreasing pattern of slice acquisition # 2 Slice timing starts at slice_end - 1
NIFTI_SLICE_ALT_INC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Alternating increasing pattern of slice acquisition Slice timing starts at slice_start
NIFTI_SLICE_ALT_INC2 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Alternating increasing pattern of slice acquisition # 2 Slice timing starts at slice_start + 1
NIFTI_SLICE_SEQ_DEC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Sequential decreasing pattern of slice acquisition
NIFTI_SLICE_SEQ_INC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Sequential increasing pattern of slice acquisition
NIFTI_TYPE_COMPLEX128 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: 128 bit COMPLEX = 2 64 bit floats.
NIFTI_TYPE_COMPLEX256 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: 256 bit COMPLEX = 2 128 bit floats.
NIFTI_TYPE_COMPLEX64 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: 64 bit COMPLEX = 2 32 bit floats.
NIFTI_TYPE_FLOAT128 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: 128 bit floating point number - MIPAV cannot handle
NIFTI_TYPE_FLOAT32 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Float (32 bits/voxel)
NIFTI_TYPE_FLOAT64 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Double (64 bits/voxel)
NIFTI_TYPE_INT16 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Signed short (16 bits/voxel)
NIFTI_TYPE_INT32 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Signed int (32 bits/voxel)
NIFTI_TYPE_INT64 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Signed long (64 bits/voxel)
NIFTI_TYPE_INT8 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Signed char (8 bits/voxel)
NIFTI_TYPE_RGB24 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: RGB triple (24 bits/voxel)
NIFTI_TYPE_UINT16 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unsigned short (16 bits/voxel)
NIFTI_TYPE_UINT32 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unsigned integer (32 bits/voxel)
NIFTI_TYPE_UINT64 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unsigned long (64 bits/voxel)
NIFTI_TYPE_UINT8 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unsigned character (8 bits/voxel)
NIFTI_UNITS_HZ - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in Hertz
NIFTI_UNITS_METER - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Spatial units are in meters
NIFTI_UNITS_MICRON - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Spatial units are in micrometers
NIFTI_UNITS_MM - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Spatial units are in millimeters
NIFTI_UNITS_MSEC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in milliseconds
NIFTI_UNITS_PPM - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in parts per million
NIFTI_UNITS_RADS - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in radians per second
NIFTI_UNITS_SEC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in seconds
NIFTI_UNITS_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Unknown spatial or temporal units
NIFTI_UNITS_USEC - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Temporal units are in microseconds
NIFTI_XFORM_ALIGNED_ANAT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Coordinates aligned to another file's or to anatomical "truth".
NIFTI_XFORM_MNI_152 - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: MNI 152 normalized coordiantes.
NIFTI_XFORM_SCANNER_ANAT - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Scanner based anatomical coordinates.
NIFTI_XFORM_TALAIRACH - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Coordinates aligned to Talairach-Tournoux Atlas; (0,0,0) = AC, etc.
NIFTI_XFORM_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Arbitrary coordinates.
niftiExtension - Variable in class gov.nih.mipav.model.file.FileWriteOptions
niftiFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Radio button to indicate that a nifti img file should be written out.
niftiParExtraction(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
NIH - Static variable in class gov.nih.mipav.model.structures.ModelLUT
NikonType1MakernoteDescriptor(MetadataExtractor.NikonType1MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDescriptor
NikonType1MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory
NikonType1MakernoteTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest
NikonType2MakernoteDescriptor(MetadataExtractor.NikonType2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDescriptor
NikonType2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory
NikonType2MakernoteTest1() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1
NikonType2MakernoteTest2() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2
nil - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
nim - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this is the number of gradient quantities that is obtained by reading first line of gradient file
nImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Number of slices in a 3D dataset.
nImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Number of slices in a 3D dataset.
nImage - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
nImage - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
nImage - Variable in class gov.nih.mipav.view.ViewJFrameImage: Number of slices in a 3D dataset.
nImage - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
nImages - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
nimCounter - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this counter is used for version 4 of Par/Rec...nim is calculated from gradient file
nimString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: t dim
nineButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
nint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nint - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
nintmx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting: This is a port of the Fortran program discrete.for version 2B (December, 1990) written by Stephen Provencher, PhD.
nInUse - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
nInUse - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
nIparts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
niter - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
niter - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
niter - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
Niter - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
NIter() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Returns the number of iterations.
nIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Number of surface evolutions.
nIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Number of surface evolutions to perform, by default set to 500.
nIterationsTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Field for inputting the number of surface evolutions to perform.
nItr - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
nItr - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
nitref - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
nix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
nix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
nix - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
niy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
niy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
niy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
niz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
niz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
niz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nje - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
NJIND - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
njoins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
nkeys - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < detected keypoints.
nL - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.Renum
NL - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
NL - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.TextRenderer
NL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: platform-independent new-line string
nl2itr(double[], int[], double[][], int, int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
nl2sno() - Method in class gov.nih.mipav.model.algorithms.NL2sol
nl2sol() - Method in class gov.nih.mipav.model.algorithms.NL2sol
NL2sol - Class in gov.nih.mipav.model.algorithms: This is a port of the source code nl2sol.f90 and the nl2sol_prb2.f90 extensive set of tests from FORTRAN into Java.
NL2sol() - Constructor for class gov.nih.mipav.model.algorithms.NL2sol
NL2sol(int, int, double[], int[], double[], boolean, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.NL2sol
NL2SOL - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
NL2SOL - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
NL2SOL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
NL2SOL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
NL2SOL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
NL2SOL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
nl2solEngine - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
nlabels - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Number of feature values
NLAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: DOCUMENT ME!
nlammx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
NLConstrainedEngine - Class in gov.nih.mipav.model.algorithms: Display results of displaying exponential fitting parameters.
NLConstrainedEngine() - Constructor for class gov.nih.mipav.model.algorithms.NLConstrainedEngine
NLConstrainedEngine(int, int) - Constructor for class gov.nih.mipav.model.algorithms.NLConstrainedEngine: NLConstrainedEngine - non-linear fit to a function.
NLConstrainedEngineEP - Class in gov.nih.mipav.model.algorithms: Display results of displaying exponential fitting parameters.
NLConstrainedEngineEP() - Constructor for class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
NLConstrainedEngineEP(int, int) - Constructor for class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: NLConstrainedEngine - non-linear fit to a function.
nlcust_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
Nlevels - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D
NLevels() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Get the number of levels.
NLFittedFunction - Class in gov.nih.mipav.model.algorithms
NLFittedFunction(int, int) - Constructor for class gov.nih.mipav.model.algorithms.NLFittedFunction
NLMeans_filt2D - Class in gov.nih.mipav.model.algorithms
NLMeans_filt2D() - Constructor for class gov.nih.mipav.model.algorithms.NLMeans_filt2D: AlgorithmBRISK - default constructor.
NLMeans_filt2D(ModelImage, ModelImage, double, double, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.NLMeans_filt2D
NLMeansAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
nlMeansFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
nlnrAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
nlps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_state_t: next state if the next encoded symbol is the LPS
NLS_MAXCOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
NLT - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: B-Spline Nonlinear Transformation Files (*.nlt).
nltest(String, boolean, int, int) - Method in class gov.nih.mipav.model.algorithms.NL2sol
nltFile - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
nltName - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
NMatrixEntry<T> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
NMatrixEntry(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NMatrixEntry
NMatrixEntry(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NMatrixEntry
nMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
NMAX - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
NMAXSQRT - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
nmer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
nmf_cost(Matrix, Matrix, Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nmi - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
NMI(int[][], int[][], int[][][], int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NMI(int[], int[], int[][], int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NMI(int[], int[], int[], int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
nMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
nMin - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
NMIN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
NMIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
nMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
nmlen - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
nModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
nModel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
NModels() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Get the number of models.
nmops - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
nmps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_state_t: next state if the next encoded symbol is the MPS
nms2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
nms2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
nms2e - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
nms2e - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
nms3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
nms3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
nms3e - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
nms3e - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
NMSimplex - Class in gov.nih.mipav.model.algorithms: Example public class Objfunc implements Objfun { public double evalObjfun(double x[]){ return (100*(x[1]-x[0]*x[0])*(x[1]-x[0]*x[0])+(1.0-x[0])*(1.0-x[0])); } } public class Constraint implements Constraints { double round2(double num, int precision) { double rnum; int tnum; rnum = num*Math.pow(10,precision); tnum = (int)(rnum < 0 ?
NMSimplex(double[], int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.NMSimplex
nmSupAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: DOCUMENT ME!
nmSuppressionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
nMTF - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
nmx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nmxc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
nmxc - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
nmxr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
nmxr - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
nmxType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
nmxType - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
nmy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nmz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nn - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
Nn - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
nn_garrote(double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
nn_garrote(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
nn_garrote(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform
nn_garrote(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform
nn_garrote(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
nn_garrote(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
nn_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
nnbrs - Variable in class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
nnbrs - Variable in class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t
NNDSVD(Matrix, Matrix, Matrix, int, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NNInterpolation(float[], int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NNInterpolation(float[], int, int, int, double, double, double, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NNInterpolation(ModelImage, int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NNInterpolationBool(boolean[][][], int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
NNInterpolationLoc(ModelImage, int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
nnlog - Variable in class gov.nih.mipav.model.algorithms.Integration2: vector of dimension at least limit, containing the c subdivision levels of the subintervals, i.e. c iwork(i) = l means that the subinterval c numbered i is of length abs(b-a)*2**(1-l)
nnlog - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: vector of dimension at least limit, containing the c subdivision levels of the subintervals, i.e. c iwork(i) = l means that the subinterval c numbered i is of length abs(b-a)*2**(1-l)
NNLS(int[], Matrix, Matrix, Matrix, Matrix, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnls_fpgm(Matrix, Matrix, Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnls_init(Matrix, Matrix, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NNLS_L1(int[], Matrix, Matrix, Matrix, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NNLS_L2(int[], Matrix, Matrix, Matrix, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NNLS_MR(int[], Matrix, Matrix, Matrix, Matrix, double, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnls_orth(Matrix, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnls_solver(Matrix, Matrix, NonnegativeMatrixFactorization.info, Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnls1_asgivens(int[], int[], Matrix, double[], int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnlsm_activeset(Matrix, int[], int[], int[], Matrix, Matrix, int, int, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnlsm_blockpivot(int[], int[], int[], Matrix, Matrix, int, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
nnres1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nnres2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nnz - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
nnz - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
nnz - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
nnz - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
nnz - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
nnz_counts_int - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
nnz_disp - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
nnz_loc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
nnzL - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
nnzU - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
no - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
NO - gov.nih.mipav.model.structures.jama.SuperLU.yes_no_t
NO - gov.nih.mipav.view.dialogs.ExitStatus: No button pressed
NO_ANGLES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
NO_AXIS - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
NO_CANCEL - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Show progress bar without a cancel button.
NO_CONVERGENCE - gov.nih.mipav.model.algorithms.CeresSolver.TerminationType
NO_MARKER - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
NO_MEMTYPE - gov.nih.mipav.model.structures.jama.SuperLU.MemType
NO_MEMTYPE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
NO_PROGRESS - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Do no show progress bar.
NO_PUBLISHER - Static variable in class gov.nih.mipav.model.file.PrivateFileDicomKey
NO_RAND_PART_A_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
NO_RAND_PART_B_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
NO_RAND_PART_C_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
NO_RANDOM_NAMES - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
NO_RANGE - gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType: No pixels will be excluded from a calculation.
NO_SCALING - Variable in class gov.nih.mipav.model.algorithms.NESolve
NO_SPARSE - gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType
NO_SPEEDUP - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel
no_split_variables - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
NO_THRESHOLD - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Not using a tranfer function (grayscale).
NO_TICKS - Static variable in interface gov.nih.mipav.model.algorithms.ContourPlot.TickMarkGenerator
no2hop - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
nobase - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
noCasesList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: List of patients need work. 2966L 3225L 6205L 6909R 9717L 9808R 3022L 8868R 5733L 8121L 8136L 9808L 7654R (wrong fem VOI, it's FAT GRE VOI) 2911L (miss patella) 5271R (miss femur) 4983L (miss femur) 5026L (miss femur,need work) 9808R (miss femur) 1959L (femur VOI wrong)
noCasesList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: List of patients need work. 2966L 3225L 6205L 6909R 9717L 9808R 3022L 8868R 5733L 8121L 8136L 9808L 7654R (wrong fem VOI, it's FAT GRE VOI) 2911L (miss patella) 5271R (miss femur) 4983L (miss femur) 5026L (miss femur,need work) 9808R (miss femur) 1959L (femur VOI wrong)
noCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
node - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RootInfo
node - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
Node() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
NODE - Static variable in class gov.nih.mipav.model.file.FileNRRD: The location of the sample is at the boundary between grid elements.
NODE_DIMENSIONS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
NODE_IMAGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
NODE_INFO - Static variable in class gov.nih.mipav.model.file.FileMincHDF
NODE_MULTIPLE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
NodeAdjacencyFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
NodeAdjacencyFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NodeAdjacencyFunction
NodeAlignedVolumeTextureRender - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Used to generate a scene node item that that represents the rendering of the volume using texture maps.
NodeAlignedVolumeTextureRender(ModelImage, VolumeTexture) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender: Create the scene graph node for the rendering of the volume data, everything except the textures from the volume data to be applied to the slices through the volume.
nodeClicked(int, Node) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Called if the node is clicked.
nodeColorChooser - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: ColorChooser for changing graph colors.
nodeCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes
nodeData - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
nodeIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData
nodeList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
nodeN - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
nodes - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB
nodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
nodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
nodes - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
nodes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
nodes_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
nodeType - Variable in class gov.nih.mipav.view.dialogs.ScriptTreeNode
NodeVolumeTextureRender - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: Used to generate a scene node item that that represents the rendering of the volume using texture maps.
NodeVolumeTextureRender(ModelImage, VolumeTexture) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Create the scene graph node for the rendering of the volume data, everything except the textures from the volume data to be applied to the slices through the volume.
NodeVolumeTextureRender(ModelImage, VolumeTexture, int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Create the scene graph node for the rendering of the volume data, everything except the textures from the volume data to be applied to the slices through the volume.
NODROP - gov.nih.mipav.model.structures.jama.SuperLU.rule_t
NODROP - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
NoEBlockRowOuterProduct(CeresSolver.BlockSparseMatrix, int, CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
NoEBlockRowsUpdate(CeresSolver.BlockSparseMatrix, double[], int, CeresSolver.BlockRandomAccessMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
NOEQUIL - gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
noExt - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
nofun - Variable in class gov.nih.mipav.model.algorithms.NESolve
noFutureDates - Variable in class gov.nih.mipav.view.JPanelEditDate: DOCUMENT ME!
noise - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Noise used in Weiner filter.
noise - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
noise - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
noise - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
noise - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
noise_factor_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
NOISE_M2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Quadratic multiplicative noise.
NOISE_M3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Cubic multiplicative noise.
NOISE_MA2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: The user can choose to use thresholding to exclude the background from any processing.
noise_std - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D
noise_std - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
noiseGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
NoiseLevel - Class in gov.nih.mipav.model.algorithms
NoiseLevel(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.NoiseLevel
NoiseLevel.rowComparator - Class in gov.nih.mipav.model.algorithms
noiseMethod - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
noiseRemoval - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
noiseScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
noiseScale - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
noiseScale - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
noiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Noise standard deviation
noiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
noiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
noiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
noiseStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
noiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
noiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
noiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Should be set equal to the noise standard deviation
noiseType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: NOISE_MA2 or NOISE_M2.
noiseType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Noise type.
noiseType - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
noiseType - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
noisyProcess - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Noisy means notifying the user of stupid errors.
noisyProcess - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Flag where true means notifying the user of stupid errors.
NoJacobianUpdateCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.NoJacobianUpdateCostFunction
noLogMax - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum image intensity with log magnitude operation removed. - TO BE MOVED
noLogMin - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum image intensity with log magnitude operation removed. - TO BE MOVED
noLogMinNonZero - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum image intensity with log magnitude operation removed. - TO BE MOVED
noLSH - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nomalRedlineBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Normal rotation red line branch group.
nomalRedLineShape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Nomal red line shape.
nominalScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Base smoothing (smoothing of octave 0, level 0)
NON_LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
NON_LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
non_uniform - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
None - gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
NONE - gov.nih.mipav.model.file.FileInfoBase.UnitType
NONE - gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold
NONE - Static variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Scale type: no scaling.
NONE - Static variable in class gov.nih.mipav.model.file.FileNRRD: Centering information for this axis is either meaningless or unknown.
NONE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm: No halftoning algorithm
NONE - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
NONE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: No display:.
NONE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: cursor default nevigation mode.
NONE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Render mode values.
NONE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
NONE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
NONE_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Do not perform triangle consistency checking - all counter clockwise or all clockwise.
noneButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
noneButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
noneButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
noneButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
noneg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
nonequalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
noneRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
noneRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
noneRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
noneRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
noneRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
nonExtremaSuppression - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < max number of detected orientations.
nonHelical - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
nonHelical - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Use serialVersionUID for interoperability.
nonHelicalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection
nonHelicalCorrection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
nonLinear - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
nonLinear - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
NONLINEAR_CONJUGATE_GRADIENT - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
nonlinear_conjugate_gradient_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
NONLINEAR_DAMPED_PENDULUM - Variable in class gov.nih.mipav.model.algorithms.ODE
NONLINEAR_DAMPED_PENDULUM - Variable in class gov.nih.mipav.model.algorithms.ODEEP
nonLinearCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
NonlinearConjugateGradient(CeresSolver.NonlinearConjugateGradientType, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradient
NonlinearConjugateGradientType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType
NonlinearConjugateGradientTypeToString(CeresSolver.NonlinearConjugateGradientType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
nonlinearFunction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
nonlinearFunction - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
nonlinearFunctionGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
nonlinearFunctionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
NonLinearGetSampleDepthAndWeight(OctNode, Point3D, float, float[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NonLinearGetSampleWeight(OctNode, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NonLinearSplatOrientedPoint(Point3D, Point3D, int, float, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NonLinearSplatOrientedPoint(OctNode, Point3D, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
NonLinearUpdateWeightContribution(OctNode, Point3D, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
nonmax(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
nonmax(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
nonneg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
NONNEGATIVE_GARROTE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
NONNEGATIVE_GARROTE - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
NonnegativeMatrixFactorization - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NonnegativeMatrixFactorization(int, Matrix, int, Matrix, Matrix, String) - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
NonnegativeMatrixFactorization.accur - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.hyperparams - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexRowComparator - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexRowItem - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexValueAscendingComparator - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexValueComparator - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexValueDescendingComparator - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.indexValueItem - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.info - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.opt - Class in gov.nih.mipav.model.algorithms
NonnegativeMatrixFactorization.stop_opt - Class in gov.nih.mipav.model.algorithms
nonNegativity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
nonNegativity - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
nonNegativityCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
nonProstateImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: non-prostate image
nonredundantButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
NONZERO_YMEAN - gov.nih.mipav.model.algorithms.libdt.Ymean_type: < assume observations are already zero-mean, i.e.
nonZeroMax - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero intensity. - TO BE MOVED - redesigned
nonZeroMaxB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
nonZeroMaxG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
nonZeroMaxR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
nonZeroMin - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero intensity. - TO BE MOVED - redesigned
nonZeroMinB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
nonZeroMinG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
nonZeroMinR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Minimum and maximum nonzero image RGB. - TO BE MOVED - redesigned
NoOfBands - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D
NoOpEvaluationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.NoOpEvaluationCallback
NOP - Static variable in class gov.nih.mipav.model.file.FileLIFF
noPastDates - Variable in class gov.nih.mipav.view.JPanelEditDate: DOCUMENT ME!
nopx - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
noRandButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
noReadPrivateTags - Variable in class gov.nih.mipav.model.file.FileNIFTI
NOREFINE - gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t
NoResidualUpdateCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.NoResidualUpdateCostFunction
norient - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
norient - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
norient - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
norm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Normalization constant used to normalize the point force.
norm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: temporary image-data buffer to store (hi-pass)/(lo-pass) data.
norm - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
norm() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
norm() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
norm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
norm(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
norm(double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
norm(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
norm(Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni: Finds the normal to the vector.
norm(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: Finds the normal to the vector.
Norm() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Norm(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Norm(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Norm(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
NORM - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: norm
norm_A - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 146 Normal A coordinate.
norm_code - Variable in enum gov.nih.mipav.model.algorithms.libdt.norm_type
norm_h - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
norm_h - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
NORM_ILLEGAL - gov.nih.mipav.model.algorithms.libdt.norm_type: < each pixel is zero-mean in time, and all pixels have unit-variance.
norm_inf(int, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron
NORM_L2 - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
NORM_NONE - gov.nih.mipav.model.algorithms.libdt.norm_type
norm_R - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 142 Normal R coordinate.
norm_S - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 150 Normal S coordinate.
norm_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.norm_t
norm_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT
norm_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < edge threshold.
norm_thresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
norm_type(int) - Constructor for enum gov.nih.mipav.model.algorithms.libdt.norm_type
norm_w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
norm_w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
NORM_ZM - gov.nih.mipav.model.algorithms.libdt.norm_type: < no normalization.
NORM_ZMUV - gov.nih.mipav.model.algorithms.libdt.norm_type: < each pixel is zero-mean in time.
Norm1() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the one-norm (L1) of the vector.
norm2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Two norm
norm2(double[]) - Method in class gov.nih.mipav.model.algorithms.curfit
norm2(libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
Norm2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the two-norm (L2) of the vector.
Norm2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
normal - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Holds normals in the mesh.
normal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction
normal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
normal() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
normal() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
normal() - Method in class gov.nih.mipav.model.algorithms.LSCM.Face
normal() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
Normal(int, CAAMPoint, CAAMPoint, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Finds the normal to the i'th point on the shape.
NORMAL_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
NORMAL_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
normalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
NormalDisplacement(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Displaces the i-th point along the normal.
normalEqComb(int[], int[], Matrix, Matrix, int[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
normalize - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
normalize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
normalize() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: works depending on the extent of the image and the colourisation of the source image in question.
normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
normalize(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
normalize(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
normalize(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
normalize(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
normalize(Double, Double, Double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
normalize(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Replace a vector by a unit-length vector in the same direction.
normalize(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Replace a vector by a unit-length vector in the same direction.
Normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Normalizes the shape by translating it's center of gravity to origo and scale by the reciprocal of the 2-norm.
Normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Normalize() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
normalize_desc(SIFT3D.SIFT3D_Descriptor) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
normalize_histogram(float[], int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT: ------------------------------------------------------------------
normalize_pi(AlgorithmGaussianMixtureModelEM.ClassSig) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
normalize_WH(Matrix, Matrix, Matrix, Matrix, Matrix, int, String) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Normalize2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Normalizes the vector to unit length, using the 2-norm.
normalized - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
NORMALIZED_MUTUAL_INFORMATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_MUTUAL_INFORMATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_MUTUAL_INFORMATION_GPU - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
NORMALIZED_MUTUAL_INFORMATION_GPU - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
NORMALIZED_MUTUAL_INFORMATION_GPU_LM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
NORMALIZED_MUTUAL_INFORMATION_GPU_LM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_XCORRELATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_XCORRELATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_XCORRELATION_SINC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_XCORRELATION_SINC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_XCORRELATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_XCORRELATION_SMOOTHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
NORMALIZED_XCORRELATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
NORMALIZED_XCORRELATION_SMOOTHED_WGT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformationSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformationSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedMutualInformationSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
normalizedMutualInformationSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
normalizedNoraml(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
normalizedXCorrelation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelation(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function.
normalizedXCorrelation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelation(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function.
normalizedXCorrelationSinc(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelationSinc(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelationSmoothed(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function.
normalizedXCorrelationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function.
normalizedXCorrelationSmoothed(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function.
normalizedXCorrelationSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function with weighting.
normalizedXCorrelationSmoothedWgt(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function with weighting.
normalizedXCorrelationSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Normalized cross-correlation cost function with weighting.
normalizedXCorrelationSmoothedWgt(TransMatrixd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Normalized cross-correlation cost function with weighting.
normalizeQE(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
NormalizeRect() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
normalizeSafe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Normalize this vector in place.
normalizeSafe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Normalize this vector in place.
normalizeSafe(Vector2f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Sets the value of this vector to the normalization of the specified vector.
normalizeSafe(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f: Sets the value of this vector to the normalization of the specified vector.
normalizeSpaceNavValue(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: takes a value from the spaceNavigotorController and normalizes the value between -1 to 1 got formula from http://www.mathworks.com/matlabcentral/newsreader/view_thread/256540
normalizeTable(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
NormalizeTexture(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Normalizes a texture vector.
NormalizeTextureVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Iterative normalization of the texture samples.
normalizeValue(double, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: got this formula from the video at http://www.youtube.com/watch?
NormalKernel(float[], float[], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
normalMovement() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
NormalPrior(Matrix, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
NormalPriorTestResidualAtRandomPosition() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NormalPriorTestResidualAtRandomPositionNullJacobians() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
normals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
Normals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
NormalVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyWriter.NormalVector
normalVectors - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
NormalVectorX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
NormalVectorY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
NormalVectorZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
normArray - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM
normcdf(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
normcdfln(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
normcdflogit(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
normFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
normFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
normFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
normFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
normFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
NormInf() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the infinity-norm (Linf) of the vector.
normMutualInfoSmoothed - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
normopt - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchOptions: < step size between patches (x, y, z).
normR - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt
normV2 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt
NORMX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
normXCorr - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
NORMY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
NORMZ - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
nornd - Variable in class gov.nih.mipav.model.algorithms.ODE
nornd - Variable in class gov.nih.mipav.model.algorithms.ODEEP
noRoiOff - Variable in class gov.nih.mipav.model.file.FileJP2
noRoiOn - Variable in class gov.nih.mipav.model.file.FileJP2
NOROWPERM - gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t
north - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
North - gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
noScalingD - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
noScalingDCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
noSpatialCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
noSpeedUpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
noSymm(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: no symmetry
NOT_A_PLANE - Static variable in class gov.nih.mipav.model.structures.VOIBase: If the points on the contour are not on the x,y, or z-plane.
NOT_A_POINT - Variable in class gov.nih.mipav.model.structures.VOI: int indicating that no point was found.
NOT_A_POINT - Static variable in class gov.nih.mipav.model.structures.VOIBase: Used in places which usually remember an index into a point vector.
not_equals(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
not_equals(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
not_equals(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
NOT_FMAX(GenericPolygonClipper.edge_node[], int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
NOT_RMAX(GenericPolygonClipper.edge_node[], int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
NOT_SORTED - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
NOT_SPECIFIED - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
not_store_infos - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
noTargetTreatment - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Treatment information to be used if the user wants to burn without any target surface.
notDir - Variable in class gov.nih.mipav.model.file.FileDicomBase: If file is a DICOMDIR this is false *
noteDate001 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteDate001String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteDate002 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteDate002String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteDate003 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteDate003String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteDate004 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteDate004String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteDate005 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteDate005String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteField - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: NoteField for providing a note about this marker.
noteField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: NoteField for providing a note about this marker.
noteNumber001 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteNumber001String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteNumber002 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteNumber002String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteNumber003 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteNumber003String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteNumber004 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteNumber004String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteNumber005 - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
noteNumber005String - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
notEq(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
noteqauls(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
notequals(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
notequals(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
notequals(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
notequals(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
notequals(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
notequals(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
notequals(CoredPointIndex) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredPointIndex
notEquals(UpdateFlags.EdgeSorter) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter
notes - Variable in class gov.nih.mipav.model.file.FileBioRad: if 0 no notes are present if nonzero 96 byte notes follow after the image data at the end of the file.
notes - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Current notes for the node.
notesCount - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
noteString - Variable in class gov.nih.mipav.model.structures.VOIText: The note stored in VOIText, has same font as textString
noThreshold() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
notifierList - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
notifyCallback(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Call the implementation of the callback's notification method, if a callback instance has been defined.
notifyCallback(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Call the implementation of the callback's notification method, if a callback instance has been defined.
notifyCallback(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Call the implementation of the callback's notification method, if a callback instance has been defined.
notifyImageDisplayListeners() - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all frames that display this image model need to be updated.
notifyImageDisplayListeners() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
notifyImageDisplayListeners(boolean, int, ModelRGB) - Method in class gov.nih.mipav.model.structures.ModelImage: Deprecated.
notifyImageDisplayListeners(boolean, ModelRGB) - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all frames that display this image model need to be updated for RGB (color) images.
notifyImageDisplayListeners(ModelLUT, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all frames that display this image model need to be updated.
notifyImageDisplayListeners(ModelLUT, boolean, int, int) - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all listeners that the image is to be redisplayed.
notifyImageDisplayListeners_notTriFrame() - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all frames except the triImage frames that display this image model need to be updated.
notifyImageExtentsListeners() - Method in class gov.nih.mipav.model.structures.ModelImage: Used to notify all frames that display this image model that this image's extents have changed.
notifyListeners(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Used to notify all listeners that the algorithm has completed.
notifyListenersOfScriptChange() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Notifies any ScriptRecorderListeners of the current script text, after it has changed in some manner.
notifyListenersOfScriptStatus() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Notifies any ScriptRecorderListeners of the current recording status of the script recorder.
notifyObservers(Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
notifyObservers(Object) - Method in interface gov.nih.mipav.model.util.Observable: If this object has changed, as indicated by the hasChanged method, then notify all of its observers and then call the clearChanged method to indicate that this object has no longer changed.
notifyOfUpdate(ModelLUT, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Enable button to indicate image has changed and the histogram should be recalculated.
notifyOfUpdate(ModelLUT, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Enable button to indicate image has changed and the histogram should be recalculated.
notifyOfUpdate(ModelLUT, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Enable button to indicate image has changed and the histogram should be recalculated.
notifyPaintListeners(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Tells images which are watching the paint region grow to update themselves.
notifyPaintListeners(boolean, boolean, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Tells images which are watching the paint region grow to update themselves.
notifyPaintListeners(boolean, boolean, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Tells images which are watching the paint region grow to update themselves.
notifyPaintListeners(boolean, boolean, BitSet) - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Tells images which are watching the paint region grow to update themselves.
notifyParentVOIProcess(boolean) - Method in class gov.nih.mipav.model.structures.VOI: Allows VOIBase's to set their parent's process flag without affecting other contours.
notifyProcessLogs(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: called when an update is made to the output log, this method updates all the process logging JTextAreas.
NOTRANS - gov.nih.mipav.model.structures.jama.SuperLU.trans_t
noTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
NOTREAD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
NOTREAD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
NOTWRITE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
NOTWRITE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
nout - Variable in class gov.nih.mipav.model.algorithms.NL2sol
noVOIsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
np_bootstrap(double[], double[], double[], int, String) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
NParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
NParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the number of principal parameters.
NParametersOrg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
NParametersOrg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the number of princal parameters before any truncation.
nParams - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Numbering of shading correction parameters.
nparts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
npbb_bounds(String) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
nperg2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nPhase - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 738 Number of Phases.
NPHASES - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
npixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData
nPlanes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: number of image planes present.
nPlanes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: number of image planes present.
nPlanes - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
npm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
nPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
nPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
nPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
nPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
nPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
NPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns the total number of points in the mesh.
NPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: The number of shape points.
NPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: The number of points in each of shape.
nPoints_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
NPPQF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
NPPQG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
nPresent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: number of principal components displayed 10 or less than 10 if fewer exist.
nprob - Variable in class gov.nih.mipav.model.algorithms.NL2sol
nProduct - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
nProperties - Variable in class gov.nih.mipav.model.file.FileTrackVis: Number of properties associated with each track
nprunedmodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
npt_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
NPTQ - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
NPTQ - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
NPTQ2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
nptqText - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
npts - Variable in class gov.nih.mipav.model.algorithms.Integration2: npts = npts2 - 2.
npts - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: npts = npts2 - 2.
nPts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Number of interpolation points.
nPts - Variable in class gov.nih.mipav.model.algorithms.NESolve
nPts - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar containing the number of data points.
nPts - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar containing the number of data points.
nPts - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
nPts - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
npts2 - Variable in class gov.nih.mipav.model.algorithms.Integration2: npts2 = breakPoints.length.
npts2 - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: npts2 = breakPoints.length.
nPyramid - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
nPyramid - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
nPyramid - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
nqm() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
NQM - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
nqm_value - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
NQPTS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
NQUAD - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
nR - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
nr_class - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
nr_class - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear.GroupClassesReturn
nr_class - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
nr_class - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
nr_class - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
nr_etdfs(int, int[], int[], int[], int[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
nr_feature - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
nr_fold - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
nr_fold - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
nr_fold - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
nr_weight - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
nr_weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
nreal - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
nrep - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
nres - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
NRformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
NRformat_loc() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
NRformat_loc3d() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
nrhs - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
nrinfo - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
nrinfo_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.nrinfo_t
nrorth - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
nrow - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix
nRow - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: in 4D row and column numbers for z slices
nRow - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
nRow - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
nRow - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
nRowCheckers - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Checkerboard display parameters.
nrows - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
NRows() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
nrowsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
NRRD - Static variable in class gov.nih.mipav.model.file.FileUtility: Nearly raw raster data.
NRRD_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Nearly raw raster data.
nrrdDataType - Variable in class gov.nih.mipav.model.file.FileNRRD: Does not tell if color or black and white.
nrrdDimensions - Variable in class gov.nih.mipav.model.file.FileNRRD: May not be the same as MIPAV dimensions because in nrrd color is a dimension.
nrrdLabels - Variable in class gov.nih.mipav.model.file.FileNRRD: nrrd axis names such as X, Y, or Z
nrrdSizes - Variable in class gov.nih.mipav.model.file.FileNRRD: The number of samples along each nrrd axis
nrrdSpaceUnits - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
nrrdUnits - Variable in class gov.nih.mipav.model.file.FileNRRD: Units of measurement of nrrd axis
nrstrt - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
nrx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
nry - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
nrz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ns - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
ns - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true north-south direction calculated.
ns - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true north-south direction calculated.
ns - Variable in class gov.nih.mipav.model.algorithms.ODE
ns - Variable in class gov.nih.mipav.model.algorithms.ODEEP
ns - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
ns - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
nS - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
nS - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
Ns - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
Nsa - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
Nsa - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
nScalars - Variable in class gov.nih.mipav.model.file.FileTrackVis: Number of scalars for each datapoint
nscale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
nscale - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising: Phase preserving wavelet image denoising MIT License Copyright (c) 2018 Peter Kovesi Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
nscale - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
nScale - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
nscales - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
nscales - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
nscales - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
nscales - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
nscales - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
nscales - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
nscales - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
nscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
nscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
nScales - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
nScales - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
nScales - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
nsCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
nsCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
nsearch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
nseg - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
nseg - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
nsel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
nseps - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
NSHAPE - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
NShapes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: The number of shapes in the collection.
nsites - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
nSlices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess: The number of slices in the largest volume
nSlices - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Number of slices in mode.
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Number of slices in original 3D image.
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: number of slices in image
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
nSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Number of slices in mode
nspn - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
nspn - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
nStartFrameDec - Variable in class gov.nih.mipav.model.file.FileJP2
nstep - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec
nstlj - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
nsubclasses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
nsuper - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
nsuper - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
nSV - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
nSV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
nSymbt - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
nt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nT - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
Nt - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
NTail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
nTestVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: DOCUMENT ME!
ntexcoord - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
NTextureSamples() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the number of samples in the texture model.
NTextureSamples() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the number of texture samples in the texture model.
nTfine - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
nthreads - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: The number of threads will be used to execute the algorithm if multi-threading is enabled
nthreads - Variable in class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: The number of threads.
nthreads - Static variable in class gov.nih.mipav.util.ThreadUtil
nthreads - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer
nthresh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
nthresh - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
Nti - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
Nti - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
nTImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Number of time sequences in a 4D dataset.
nTImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Number of time sequences in a 4D dataset.
nTImage - Variable in class gov.nih.mipav.view.ViewJFrameImage: Number of time sequences in a 4D dataset.
nTimePeriods - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
ntimestepsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
NTriangles() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns the total number of triangles in the mesh.
nTrueVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: DOCUMENT ME!
ntry - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ntx - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
ntx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
NTX - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
nty - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
nty - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
ntype - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
ntz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
ntz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
nu - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
nu - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
NU_SVC - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
NU_SVC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
NU_SVR - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
NU_SVR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
NUCLEAR_MEDICINE - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality nuclear medicine.
NUCLEAR_MEDICINE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality nuclear medicine.
nuclearRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Radius of nuclear membrane in um.
nufft_3d(double[][][][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
nufft3dauxmx(int, int, int, int, int[], double[], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
NUL - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
NULL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
null_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
null_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
NULL_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
null_space_rank - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
nullChar - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants
NullJacobianFinalizer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NullJacobianFinalizer
NullOutputStream() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.NullOutputStream
NullOutputStreamTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.NullOutputStreamTest
num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe
num - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mesh
num - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
num - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
num - Variable in class gov.nih.mipav.model.file.FileIO.LinkedNum
num - Variable in enum gov.nih.mipav.view.Preferences.LogLevel
num_abs_unstable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
num_active_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
num_additional_elements - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
NUM_ARITH_TBLS - Static variable in class gov.nih.mipav.model.file.libjpeg
NUM_BRUSHES_INTERNAL - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
NUM_BUTTONS - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
num_callocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
num_cg_iters - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
num_col - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
num_col_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
num_col_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
num_col_blocks_e() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_col_blocks_e_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_col_blocks_f() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_col_blocks_f_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix
num_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrixRandomMatrixOptions
num_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
num_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
num_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
num_cols - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
num_cols - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
num_cols - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_cols() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
num_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver
num_cols_e() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols_e_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols_f() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols_f_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_cols_no_snp - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
num_components - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
num_consecutive_invalid_steps_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
num_consecutive_nonmonotonic_steps_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
num_cost_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
num_deaths - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
num_destructions_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DestructorCountingCostFunction
num_devices - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
num_dmatvec - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
num_duplicates - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
num_effective_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_effective_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
num_effective_parameters_reduced - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_eliminate_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
num_eliminate_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
num_eliminate_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTestOptions
num_eliminate_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
num_eliminate_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
num_eliminate_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
num_eliminate_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
num_eliminate_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
num_eliminate_cols - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
num_expansions - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
num_extremal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
NUM_FIELDS - Static variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
num_filters - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.GSS_filters
num_function_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
num_gradient_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
num_gradient_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
num_hallocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t
num_horz_regions - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
NUM_HUFF_TBLS - Static variable in class gov.nih.mipav.model.file.libjpeg
num_independent_variables - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_inner_iteration_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_intervals - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
num_intervals - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
num_intervalsText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
NUM_INVISIBLE_BUTTONS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: We want to be able to toggle the bounding box button, but don't want it to be part of any other button group.
num_iter - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Ransac
num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverSummary
num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
num_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategySummary
NUM_ITERATIONS - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used for the parameter indicating the number of iterations to perform in a script action.
num_iters - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
num_jacobian_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_kp_levels - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
num_kp_levels_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
num_layers_to_decode - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t
num_levels - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
num_line_search_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_linear_solver_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
num_linear_solver_threads_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_linear_solver_threads_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_linear_solves - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_local_mem_banks - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
num_local_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
num_lookaheads - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
num_nonzero_elements - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
num_nonzero_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix
num_nonzeros - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
num_nonzeros - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
num_nonzeros() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_nonzeros_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_nonzeros_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_octaves - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
NUM_OVERSHOOT_BYTES - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
num_parameter_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_parameter_blocks_reduced - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
num_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions
num_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
num_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverStateUpdatingCallback
num_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
num_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
num_parameters_reduced - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_procs_to_recv - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
num_procs_to_send - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
NUM_QUANT_TBLS - Static variable in class gov.nih.mipav.model.file.libjpeg
num_random_splits - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_random_splits - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
num_random_splits - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
num_residual_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_residual_blocks_reduced - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_residual_evaluations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
num_residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
num_residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_residuals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
num_residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
num_residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
num_residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
num_residuals_reduced - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_row_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
num_row_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
num_row_blocks_e_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix
num_rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrixRandomMatrixOptions
num_rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
num_rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
num_rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
num_rows - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm
num_rows - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
num_rows - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrixPreconditionerWrapper
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
num_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
num_rows_rounded - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
num_samples - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_samples - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
num_samples_at_risk - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
num_samples_oob - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
num_sols - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
num_sols - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
num_successful_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
NUM_TEMPV(double, double, double, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
NUM_TEMPV(int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
NUM_TESTS - Variable in class gov.nih.mipav.model.algorithms.CVODES
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluatorOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
num_threads - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_threads - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
num_threads_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
num_threads_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_threads_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_timepoints - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
num_too_big - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
num_too_small - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
num_trees - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_trees - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
num_unstable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats
num_unsuccessful_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
num_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
num_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
num_variables - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
num_vert_regions - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
num_vertices - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex_list
num_vertices_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveCostFunction
num_warnings - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
num_workgroups - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
num_workitems_per_workgroup - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
num_xforms_per_workgroup - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelInfo
num_zmatvec - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
numAperture - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
numAperture - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
numbands - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
number_of_clusters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
number_of_iterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
numberCharacterClasses - Variable in class gov.nih.mipav.model.file.FileMATLAB
numberChecked() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: This method finds the number of checked checkboxes in the list.
numberClusters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
numberClusters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
numberClusters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
numberClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
numberClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
numberClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
numberCoarseTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numberCoarseTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numberCoarseTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numberColors - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
NumberComparator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.NumberComparator
numberDicomSlices - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
numberE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numberF - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
numberF - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numberFeatures - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
numberFeatures - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
numberFeatures - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: number features.
numberFeatures - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: number features being saved.
numberFeatures - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
numberFeatures - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
numberField - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the input for the user to enter what number they want to change to
numberFiltersAdditional - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
numberFiltersAdditional - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
numberFOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numberFormat - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
numberFormat - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
numberFormatIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
numberGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
numberImages - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
numberImages - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
numberImagesPerEWindow - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
numberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The number of iterations for calculating the deconvolution:
numberLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
numberList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
numberList - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
numberOfA0Images - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfAverages - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfAverages - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
numberOfAverages - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
numberOfAverages - Variable in class gov.nih.mipav.model.file.FilePARREC
numberOfAveragesIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
numberOfAveragesPos - Variable in class gov.nih.mipav.model.file.FilePARREC
numberOfControlPoints - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
numberOfControlPoints - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
numberOfDiffusionDirections - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfDivisions - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
numberOfEchos - Variable in class gov.nih.mipav.model.file.FileGESigna4X
numberOfEchos - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
numberOfHistogramBins - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
numberOfImagesInMosaic - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices
numberOfIndentationsCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
numberOfIndentationsCurvatureDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
numberOfIndentationsHull - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
numberOfIndentationsHullDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
numberOfLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
numberOfLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
numberOfLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
numberOfLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
numberOfNeighbors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLLE: This is a port of the file lle.m created by Professor Lawrence K.
numberOfNeighbors - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE
numberOfObjects - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfPhaseEncodingSteps - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
numberOfProjections - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
numberOfRepetitions - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfRequiredInputs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
numberOfRequiredVOIsForScriptImages - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
numberOfSamplesDisplayed - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
numberOfSamplesPerDivision - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
numberOfSegments - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
numberOfSlices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: DOCUMENT ME!
numberOfSlices - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
numberOfSlices - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Used for 3D loop control.
numberOfSlices - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Used for 3D loop control.
numberOfStatistics - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: number of statistics in the list.
numberPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
numberSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
numberSpaceSlices - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
numberV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
numberV - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numberVOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numberXField - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: resize x value.
numberYField - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: resize y value.
numBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
numBins - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
numbits - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: number of bits needed for code at index.
numBlank - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
numBlanks - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Number of blank images, to make up gap.
numboundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
numbps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
numbps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
numBurn - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Initialized the number of burning point.
numBytes - Variable in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType
numCANCEL - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
numCardioids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
numCardioids - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
numCardioidsFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
numCardioidsText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
numCells - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 46 Number of cells in det.
numChannels - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
numChannels - Variable in class gov.nih.mipav.model.file.FileRaw
numChannels - Variable in class gov.nih.mipav.model.file.FileRawChunk
numChecked - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
numChecked - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
numCircles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
numCircles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle
numCircles - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
numCircles - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
numCirclesFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice
numCirclesText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
numCirclesText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
numClasses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
numClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
numCoarseX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numCoarseY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numCoarseZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numColors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
numColors - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
numColors - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
numColors() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap
numColors() - Method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap
numColors() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap
numComponents - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Number of components - 1 for black and white, 4 for color.
numComponents - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
numComponents() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericKey
numcomps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t: number of components in the image
numcomps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: number of components in the image
numcomps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
numContours - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
numControlPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
numCoords - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: DOCUMENT ME!
numCoords - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: DOCUMENT ME!
numData - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
numData - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset: < Pointer to data.
numDcnK - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 70 Number of Decon kernels.
NUMDER - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
numDestColors - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
numDigits(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
numDigits(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
numDimArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
numDirections - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
numDirections - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
numE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
numEdges() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
NumEffectiveParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
NumEffectiveParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
NumEffectiveParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
NumEffectiveParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
NumEffectiveParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
numEigenvaluesFound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
NumElements() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
numEllipsePts - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
numEllipses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
numEllipses - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
numEllipses - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
numEllipses - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: number of ellipses to be found
numEllipsesFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
numEllipsesText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
numEllipsesText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
numEmbeddedImages - Variable in class gov.nih.mipav.model.file.FileDicomBase: The number of images inside of this file which are not the main displayable image (may be icon, RT planning, etc.
numEquations - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
numEquations - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
numEquations - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
numEquations - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
NUMERIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
numeric_jacobians - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
NumericDiffCostFunction(CostFunctor, CeresSolver.NumericDiffMethodType, CeresSolver.Ownership, CeresSolver.NumericDiffOptions, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
NumericDiffCostFunction(CostFunctor, CeresSolver.NumericDiffMethodType, CeresSolver.Ownership, CeresSolver.NumericDiffOptions, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
NumericDiffCostFunctionEasyCaseCostFunctionCentralDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseCostFunctionForwardDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseCostFunctionRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseFunctorCentralDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseFunctorCentralDifferencesAndDynamicNumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseFunctorForwardDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEasyCaseFunctorRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionEigenRowMajorColMajorTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionExponentialCostFunctionRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionExponentialFunctorRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionPartiallyFilledResidualShouldFailEvaluation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionRandomizedCostFunctionRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionRandomizedFunctorRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseCostFunctionCentralDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseCostFunctionForwardDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseCostFunctionRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseFunctorCentralDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseFunctorForwardDifferences() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffCostFunctionTranscendentalCaseFunctorRidders() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
NumericDiffMethodType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
NumericDiffOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
numErosions - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The number of erosions to perform (and the number of levels of attenuation to do).
numErosions - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The number of levels of attenuation to perform (done through morphological erosion).
numErosionsTF - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Number of erosions text field.
numFaces() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
numFeatureBufferSize - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
numFeatures - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
numFeaturesWithNumScales - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
numFitParam - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
numflag - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
numFrames - Variable in class gov.nih.mipav.model.file.FileInfoAvi: DOCUMENT ME!
numgbits - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: number of guard bits
numgbits - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: number of guard bits
NumGrad(CDVector, CDVector, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: calculate nummerical gradient function usingdecided gradient calculation method input: x: parameter dFuncVal: function value in x output: gradient: gradient
NumGroups() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
numHorizontal - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
numHyperbolas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
numHyperbolas - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: number of hyperbolas to be found
numHyperbolasFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
numHyperbolasText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
numIm - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
numImages - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
numInvestigators - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
numIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
numIterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: The number of iterations.
numIterations - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: The number of iterations.
numIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
numIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
numlayers - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: number of layers
numlayers - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t: number of layers
numleafsh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
numleafsv - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
numlenbits - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
numLinesFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
NumLocalParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
numLongPairs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
numMatches - Variable in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel
numMinima - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Number of minima from level 8 to test at level 4 when registering the original image against the flipped image.
numMinima - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Number of minima from level 8 to test at level 4.
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
numMinima - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
numMinima_def - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
numMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
numNeighbor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
numNeighbor - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
numNeighbours - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
numnewpasses - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
numnewpasses - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
numnodes - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
numNonExtremaSuppressed - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
numNuisanceParam - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
numObjects - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer
numOctaves - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < resolution of each octave.
numOfBins - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
numOfBins - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
numOfSlices - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
numOK - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
numOperators - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
numOperators - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
numOperators - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
numOrientations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
numOrientations - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
numOrientations - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
numPages - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
numParabolas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
numParabolas - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
numParabolasFound - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
numParabolasText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
numParam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
NumParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
NumParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
NumParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
NumParameterBlocksCostFunction(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.NumParameterBlocksCostFunction
numParameters - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
numParameters - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
numParameters - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
numParameters - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
numParameters - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.FirstOrderFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FreudensteinAndRothFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFirstOrderFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticTestFunction
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock
NumParameters() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock2
NumParameters() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.diffGaussians
numParts - Variable in enum gov.nih.mipav.view.Preferences.ComplexDisplay: How many parts the complex display has
numpasses - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
numpix - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
numpix - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
numPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: num pixels in threshold
numPixels - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
numPixels - Variable in class gov.nih.mipav.model.structures.VOIBase: Number of pixels in the array used in graphing intensity along the boundary.
numPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
numPixelsB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: num pixels in threshold
numPixelsG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: num pixels in threshold
numPixelsR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: num pixels in threshold
numpocs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: number of progression order changes
numPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
numPoints() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Points
numProbes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Since we have three type of probes, we set three the number of probes.
numProp - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Number of scalars per track point and number of properties per track
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Number pixels to prune.
numPruningPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Number of pixels to prune
numReceivers - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: The number of NMR receivers.
numReceivers - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
numrecs - Variable in class gov.nih.mipav.model.file.FileInfoMinc: DOCUMENT ME!
numRegions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
numRepIm - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Number of repeated images, to compensate for gap.
numRepIm - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
NumResidualBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
NumResidualBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
NumResidualBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
NumResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
numresolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_comp_t: number of resolution levels
numresolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: number of resolutions
numresolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: number of resolutions
numresolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
numSamples - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
numSamplesLeftOfCutpoint(Vector<Double>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
numScalar - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Number of scalars per track point and number of properties per track
NumScratchDoublesForEvaluate() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
numSegments() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
numsegs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
numSets - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: counter for number of sets within file info.
numShortPairs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
numSlice - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Number of slices in 3D image
numSlices - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: numSlices
numSlices - Variable in class gov.nih.mipav.model.file.FilePARREC: num slices per volume
numSlices - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: num slices for result image *
numSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: Number of slices in the image.
numSlices - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: num slices for result image *
numSlicesField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
numSlicesInBetween - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: num slice in between voi1 and voi2
numSlicesPerVolume - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this is the number of image slices per volume
numSlicesString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: z dim
numSlicesTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
numSpaceKinds - Variable in class gov.nih.mipav.model.file.FileNRRD: Number of nrrd dimensions for which the kinds string equals "SPACE".
numSpatialBins - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc: < Number of neighbours.
numSpheres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
numSpheres - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
numSpheresText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
numStdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: number of standard deviations used in thresholding
numStdDevB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: number of standard deviations used in thresholding
numStdDevG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: number of standard deviations used in thresholding
numStdDevR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: number of standard deviations used in thresholding
numSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
numSteps - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
numSubdivisions - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
numSurfaceSegments - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
numThicknesses - Variable in class gov.nih.mipav.model.file.FileNRRD: Number of axes for which thicknesses values found
numTileSheets - Variable in class gov.nih.mipav.view.ViewUserInterface: if user selects to open images as tiles, then this counter tells us how many tile sheets there are*
numTimes - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
numTimes - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
numTotalSlices - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
numTotalSlices - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
numTracks - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Number of tracts
numTracks - Variable in class gov.nih.mipav.model.file.FileTrackVis: If 0 then # of tracks is unknown
numTrials - Variable in class gov.nih.mipav.model.file.FileAfni: FUNC_BN_TYPE Binomial # Trials, Probability per trial.
numTriangles() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles
numTSlices - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
NumType(String, int, FileDicomTagInfo.VR...) - Constructor for enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType
numUnImg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 216 - (internal use) Number of Unstored Images.
numValues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
numValues - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
numValues - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
numValues - Variable in class gov.nih.mipav.model.file.FileMetaImage
numValues() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
numValues() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase
numVariables - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
numVariables - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
numVariables - Variable in class gov.nih.mipav.view.ViewJFrameGraph
numVariablesField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
numVariablesField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
numVariablesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
numVariablesLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
numVertical - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
numVertices() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph
numVertices() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
numVertsTable - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
numVisibleSlices - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
numVOIAdded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
numVOIs - Variable in class gov.nih.mipav.model.file.FileVOI: The number of VOIs in the image.
numVolumes - Variable in class gov.nih.mipav.model.file.DTIParameters
numVolumes - Variable in class gov.nih.mipav.model.file.FileBRUKER
numVolumes - Variable in class gov.nih.mipav.model.file.FileImageXML
numVolumes - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: numSlices
numVolumes - Variable in class gov.nih.mipav.model.file.FilePARREC: num vols in 4d dataset
numVolumes - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: number of Volumes in DWI Image
numVolumesTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
numVoxels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
numXColors - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
numYColors - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
nvalues - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Marginal.
NVector() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.NVector
NVectorF - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson
NVectorF() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
NVectorF(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
NVectorF(int, int, float[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
NVectorF(int, NVectorF) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
nvertices - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
nvgrid - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
nVmax - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt
nVOI - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: number of vois
nVOI - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
nVOI - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
nVOI - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
nVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
nVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
nVolumes - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
nVox - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
nVoxels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
nVoxels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: factor above median at which edge values are taken to zero.
nvtxs - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
nw - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
nwarps - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
nwarps - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
nwave - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
nwhich - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < List of entries to update
nx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
nx - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
nx - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
nx - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
nx - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
nx - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
nx - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
Nx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
nXStart - Variable in class gov.nih.mipav.model.file.FileMRC
ny - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
ny - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
ny - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
ny - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
ny - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
ny - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
ny - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
nYStart - Variable in class gov.nih.mipav.model.file.FileMRC
nz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
nz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
nz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
nz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
nz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
nz - Variable in class gov.nih.mipav.model.algorithms.Bessel: Number of components set to zero due to underflow nz[0] = 0, normal return nz[0] > 0, Last nz components of cy set to zero due to underflow, cy[j] = 0.0 + i*0.0 for j = sequenceNumber - nz, ..., sequenceNumber-1 Length of array passed in must be 1.
nz - Variable in class gov.nih.mipav.model.algorithms.BesselEP: Number of components set to zero due to underflow nz[0] = 0, normal return nz[0] > 0, Last nz components of cy set to zero due to underflow, cy[j] = 0.0 + i*0.0 for j = sequenceNumber - nz, ..., sequenceNumber-1 Length of array passed in must be 1.
nz - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
nz - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
nz - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
nz - Variable in class gov.nih.mipav.model.file.FileMRC: DOCUMENT ME!
nz - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
nz - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
nzlmax - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
nzlumax - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
nZStart - Variable in class gov.nih.mipav.model.file.FileMRC
nzumax - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.DNformat
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
nzval - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
nzval_colbeg - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
nzval_colend - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
nzval_colptr - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
nzvaldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.DNformat
nzvaldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
nzvaldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
nzvaldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
nzvaldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat

O

o - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint
o - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint
O - Variable in class gov.nih.mipav.model.algorithms.SIFT
O - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < image height.
O - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
o_cur - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < maximum level index.
o_min - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < number of levels per octave.
O7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Oscillation 7
OARTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Array of tolerances for each dimension.
OARTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Array of tolerances for each dimension.
OARTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Array of tolerances for each dimension.
oastDetector - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
OastDetector9_16 - Class in gov.nih.mipav.model.algorithms: oast9 - OAST, an optimal corner detector based on the accelerated segment test for a 16 pixel mask Copyright (c) 2010, Elmar Mair All rights reserved.
OastDetector9_16(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.OastDetector9_16
OB - gov.nih.mipav.model.file.FileDicomTagInfo.VR
obj - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo
obj - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo
objBehaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The BranchGroup to which the standard behaviors are attached, zoom and rotate.
objBoxFrameBG - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Parent of the whole box frame.
objBoxSlices_BG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: BranchGroup[] containing the slice BOXES:
objBoxSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Parent of the x slice.
objBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
objClipSliceA_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping branch group.
objClipSlices_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: root of all the clipping slices branch group.
objClipSliceStatic_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping branch group.
objClipSliceStaticInv_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static clipping branch group.
objClipSliceX_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent for each individual clip slices branch group, childen of objClipSlices_BG.
objClipSliceXInv_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent of the -x, -y, -z clip slices branchgroup.
objClipSliceY_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent for each individual clip slices branch group, childen of objClipSlices_BG.
objClipSliceYInv_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent of the -x, -y, -z clip slices branchgroup.
objClipSliceZ_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent for each individual clip slices branch group, childen of objClipSlices_BG.
objClipSliceZInv_BG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Parent of the -x, -y, -z clip slices branchgroup.
object - Variable in class gov.nih.mipav.model.file.FileInfoFits
objectBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
objectGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
objective - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Solver epoch (iteration / num samples).
Objective(String, String, String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective: Creates a new Objective object.
objectiveContrastMethod - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.InstrumentRef
objectiveID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective
objectiveID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
objectiveID - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveImmersionType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveNA - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveName - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
objectiveName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveNumericalAperature - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The object numerical aperature, a property of the lens used to image the sample:
objectivePosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
objectives - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
objectiveSphereCorrection - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
objectiveSphereCorrection - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
objectiveTurretPosition - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectiveWorkingDistance - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Vector list of AlgorithmInterface objects.
ObjectLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
objectPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
objectRefSize - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer
ObjectRotation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
objects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Vector that holding the current available objects in the 2D image.
objects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Vector that holding the current available objects in the 2D image.
objects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Vector that holding the current available objects in the 3D image.
objects - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults
objectType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
objectXRotLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Object rotation parameter labels.
objectYRotLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Object rotation parameter labels.
objectZRotLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Object rotation parameter labels.
objMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
objMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
objPlane_BG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: BranchGroup[] containing the image planes.
objPlane_BG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: BranchGroup[] containing the image planes.
objRootBG - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The BranchGroup root of the scene managed by the simple universe.
objTransSlices_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Group dictating how the XY plane is translated.
objTransSlices_TG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Group dictating how the XY plane is translated.
objTransSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Member variables used to display the rendered image on the texture-mapped polygon, stored so that they can be updated as the render target image size is changed by the user-interface:.
objTransXY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Transform group guiding how image is displayed.
objTransXY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Group dictating how the XY plane is translated.
objtype - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
objXYPlane - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Parent of the XY plane image.
obliquePlane - Variable in class gov.nih.mipav.model.file.FileGESigna4X
obliquePlane - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
obliquePlane - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 270.
obliqueReconstruction - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
obs_allbits - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
Observable - Interface in gov.nih.mipav.model.util: An interface for the Observable
observedCardiacCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
observer - Variable in class gov.nih.mipav.model.file.FileInfoFits
Observer - Interface in gov.nih.mipav.model.util: An interface for the Observer pattern.
observerList - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
obtainBValuesDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method obtains the b-values for each volume from either the public tag or the private tag.
obtainListFileDataParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method obtains list file data mostly from the 1st slice
octave - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
octave - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < temporary pixel buffer.
octave - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
octave_height - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current octave width.
octave_width - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < current DoG data.
octaveFirstSubdivision - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Number of octave subdivisions
octaveLastSubdivision - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Index of the first octave subdivision
octaveResolution - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < peak threshold for Laplacian scale selection.
octaveResolution - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Index of the last octave
octaves - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
octaves - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpace: < Geometry of the scale space
octaves - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
OCTET - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
OctNode - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
OctNode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Octree - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Octree(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
ocularTotalMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
OD - gov.nih.mipav.model.file.FileDicomTagInfo.VR
OddMagicSquare(int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ODE - Class in gov.nih.mipav.model.algorithms
ODE() - Constructor for class gov.nih.mipav.model.algorithms.ODE: Creates a new ODE object.
ODE(int, double[], double[], double, double[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.ODE
ODEEP - Class in gov.nih.mipav.model.algorithms
ODEEP() - Constructor for class gov.nih.mipav.model.algorithms.ODEEP: Creates a new ODEEP object.
ODEEP(int, DoubleDouble[], DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, int[]) - Constructor for class gov.nih.mipav.model.algorithms.ODEEP
ODEExtModel(int, double[], double[], double, double[], double[], int[], double[][], double[][], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
ODEHPModel(int, double[], double[], double, double[], double[], int[], double[][], double[][], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
ODEModel(int, double[], double[], double, double[], double[], int[], double[][], double[][], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
ODERectModel(int, double[], double[], double, double[], double[], int[], double[][], double[][], double[], double[], double[][], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
ODESTModel(int, double[], double[], double, double[], double[], int[], double[][], double[][], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
odither - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
ODITHER_CELLS - Static variable in class gov.nih.mipav.model.file.libjpeg
ODITHER_MASK - Static variable in class gov.nih.mipav.model.file.libjpeg
ODITHER_SIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
oeFilter(double[][], double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
oeFilter(double[][], double, double, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
oeFilter(double[][], double, double, int, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
oeFilter(double[][], double, double, int, double, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: Compute unit L1- norm 2D filter.
of(T1, T2) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Pair: syntactic sugar
OF - gov.nih.mipav.model.file.FileDicomTagInfo.VR
off - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
OFF - gov.nih.mipav.view.Preferences.LogLevel
offCentre - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: Off-centre translation
offCentre - Variable in class gov.nih.mipav.model.file.FileInfoSPAR: Off-centre translations
offGraphics - Variable in class gov.nih.mipav.view.ColorWheel: offscreen graphics handle
offImage - Variable in class gov.nih.mipav.view.ColorWheel: offscreen image
offscreenImage - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
offset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
offset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
offset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
offset - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.fftPadding
offset - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF
offset - Static variable in class gov.nih.mipav.model.algorithms.StochasticForests
offset - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
offset - Variable in class gov.nih.mipav.model.file.FileInfoBase: Number of bytes to the start the image data - ie. the header length
offset - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
offset - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal
offset - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector
offset - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal
offset - Variable in class gov.nih.mipav.model.file.FileVista: offset to image data
offset - Variable in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
offset - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: The offset of the raw pixel data in the RAW file
offset - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: The offset of the raw pixel data in the RAW file
offset - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The current offset of the raw pixel data in the RAW file
offset - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
offset - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: The offset.
offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter: The offset.
offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
offset - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
offset(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
offset(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
offSet - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Optional offset (in mm) boundary around the segmented region
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.Panorama
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo
OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings
offset_dictionary - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
offset1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
offset1 - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
offset2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
offsetAcquisitionParameters - Variable in class gov.nih.mipav.model.file.FileLSM
offsetArray - Variable in class gov.nih.mipav.model.file.FileZVI
offsetBleachRoi - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetChannelColors - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetChannelDataTypes - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetChannelFactors - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetChannelWavelength - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetCharacteristics - Variable in class gov.nih.mipav.model.file.FileLSM
offsetConstant - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
offsetDistance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Distance between the 2 pixels in the pair - almost always 1.
offsetDistance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Distance between the 2 pixels in the pair - almost always 1.
offsetDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
offsetDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
offsetEventList - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 862 offset Frequency_Mag.
offsetInputLut - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetIntSize - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer
offsetKsData - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetLinescanOverlay - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
OffsetMask - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
offsetMeanOfRoisOverlay - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetOutputLut - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetPalette - Variable in class gov.nih.mipav.model.file.FileLSM
offsetPositions - Variable in class gov.nih.mipav.model.file.FileLSM
offsetr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.TData
offsetRoi - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsets - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.TData
offsetScanInformation - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
OffsetShift - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
OffsetShift1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
OffsetShift2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
OffsetShift3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
offsetSp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
offsetStep - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
offsetTableOffset - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer
offsetText - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
offsetTilePositions - Variable in class gov.nih.mipav.model.file.FileLSM
offsetTimeStamps - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetTopolsolineOverlay - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetTopoProfileOverlay - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetUnmixParameters - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.TData
offsetVectorOverlay - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
offsetX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
offsetX - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Offset to draw the tick mark and value label.
offsetX - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
offsetX - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
offsetX - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: Offset to draw the tick mark and value label.
offsetY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
offsetY - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: DOCUMENT ME!
offsetY - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
offsetY - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
offsetY - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
offsetZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
oflow - Variable in class gov.nih.mipav.model.algorithms.Integration2: D1MACH(2) = 2**(emax)*(1 - 2**(-doubleDigits)) = 2**1024*(1 - 2**-53) D1MACH(2) = Double.MAX_VALUE.
oflow - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: D1MACH(2) = 2**(emax)*(1 - 2**(-doubleDigits)) = 2**1024*(1 - 2**-53) D1MACH(2) = Double.MAX_VALUE.
oflow - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: emax = 1024, the largest exponent E for double precision, is I1MACH(16) D1MACH(2) = 2**(emax)*(1 - 2**(-doubleDigits)) = 2**1024*(1 - 2**-53) D1MACH(2) = Double.MAX_VALUE.
ok - Variable in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel
ok - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Boolean indicating if the OK button has been pressed when JDialogCaptureScreen is launched through the report bug form
ok - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
OK - gov.nih.mipav.view.dialogs.ExitStatus: Ok button pressed
OK - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
OK - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
OK - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
OK_FAIL - gov.nih.mipav.view.dialogs.ExitStatus: Ok button pressed and listener conditions failed
OK_SUCCESS - gov.nih.mipav.view.dialogs.ExitStatus: Ok button pressed and listener conditions passed
okAction() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Saves the list on the left side of the dialog, then closes the dialog.
okAction() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: When an OK action occurs, it calls this method, which is included for subclasses to cause independant actions, without needing to over-ride the action handler.
OKAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase.OKAction
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Whether the window was closed through the user clicking the OK button (and not just killing the dialog).
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Whether the window was closed through the user clicking the OK button (and not just killing the dialog).
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: DOCUMENT ME!
okayPressed - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Whether the window was closed through the user clicking the OK button (and not just killing the dialog).
okayPressed - Variable in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Indicator for OK button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Was the okay button pressed.
okayPressed() - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Was the okay button pressed.
OkBgListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBgListener
OkBorderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate.OkBorderListener
OkBorderListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBorderListener
okButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
okButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
okButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
OKButton - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
OKButton - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
OKButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
OKButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: OK button is used on most dialogs.
OKButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
OKButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: OK button is used on most dialogs.
OKButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: OK button is used on most dialogs.
OKButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
OKButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: OK button is used on most dialogs.
OKCancelPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: ok/cancel panel of dialog
OkColorListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGridOptions.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelLights.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameImage.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameTriImage.OkColorListener
OkColorListener() - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT.OkColorListener
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Creates a new OkColorListener object.
OkColorListener(JButton) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Creates a new OkColorListener object.
okFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: OK Button has been pressed: Copy the blurred face volume and the original data into the ModelImage.
okPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
OL - gov.nih.mipav.model.file.FileDicomTagInfo.VR
OLD_DETECTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Perform zero crossing detection using Matt's old method.
OLD_DETECTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Perform zero crossing detection using Matt's old method.
OLD_DETECTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Perform zero crossing detection using Matt's old method.
old_fLevel - Variable in class gov.nih.mipav.view.WindowLevel
old_fWindow - Variable in class gov.nih.mipav.view.WindowLevel
OLD_LAYOUT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: A constant for which to test in the actionPerformed.
oldBarMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
oldBarMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
oldBase - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
oldContour - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
oldEnd - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
olderVersion - Variable in class gov.nih.mipav.model.file.FileInfoDicom: True is image format < DICOM 3.0.
oldFrame - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: Used to set old or new mode of registration.
oldFrames - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: All the valid JFrames in the GUI.
oldLayout - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
oldMember - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
oldMember - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
oldPanes - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Old glass panes to reset to after drawing is done.
oldRubberband - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
oldSeedIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The intensity value to use to recalculate the possible seed points when switching from CLICK_POINT mode back to AUTO_MODE.
oldTdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: Original T dimension of the image.
oldTimeStepVolume - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Volume for each time step.
oldUVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
oldValue - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
oldVersionGradientsAL - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: arraylist of gradients for version 4 of Par/Rec
oldVVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
oldWVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
oldX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
oldX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
oldY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
oldY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
oldZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
oldZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
oldZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Original Z dimension of the image.
oldZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Original Z dimension of the image.
oldZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Original Z dimension of the image.
oldZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Original Z dimension of the image.
oldZdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Original Z dimension of the image.
OLEDB_RECORDING_ENTRY_SCAN_MODE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
OlympusCameraSettingsMakernoteDescriptor(MetadataExtractor.OlympusCameraSettingsMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor
OlympusCameraSettingsMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory
OlympusCameraTypes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory: These values are currently decoded only for Olympus models.
OlympusEquipmentMakernoteDescriptor(MetadataExtractor.OlympusEquipmentMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
OlympusEquipmentMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory
OlympusFocusInfoMakernoteDescriptor(MetadataExtractor.OlympusFocusInfoMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDescriptor
OlympusFocusInfoMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory
OlympusImageProcessingMakernoteDescriptor(MetadataExtractor.OlympusImageProcessingMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDescriptor
OlympusImageProcessingMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory
OlympusMakernoteDescriptor(MetadataExtractor.OlympusMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDescriptor
OlympusMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory
OlympusRawDevelopment2MakernoteDescriptor(MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor
OlympusRawDevelopment2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory
OlympusRawDevelopmentMakernoteDescriptor(MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDescriptor
OlympusRawDevelopmentMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory
OlympusRawInfoMakernoteDescriptor(MetadataExtractor.OlympusRawInfoMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDescriptor
OlympusRawInfoMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory
omax - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
omax - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
omax - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
ome - Variable in class gov.nih.mipav.model.file.FileInfoOME: DOCUMENT ME!
OME() - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME
omega - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
omega - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
omega - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the integrand weight function
omega - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the integrand weight function
omega0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
omega1 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
omega2 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
omegaLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
omeName - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter
OMETIS_DEFAULT_UFACTOR - Variable in class gov.nih.mipav.model.structures.jama.METIS
omin - Variable in class gov.nih.mipav.model.algorithms.SIFT
omin - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
omin - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
omin - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
omin - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
on - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: A flag indicating whether or not the light is on.
on_odd_row - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
on_odd_row - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2
ONE - Variable in class gov.nih.mipav.model.algorithms.CVODES
ONE - Static variable in class gov.nih.mipav.util.DoubleDouble
ONE_CLASS - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
ONE_CLASS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
ONE_CLASS_Q - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
ONE_CLASS_Q(LIBSVM.svm_problem, LIBSVM.svm_parameter) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
ONE_CLASS_Q(svm_problem, svm_parameter) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
ONE_HALF - Static variable in class gov.nih.mipav.model.file.libjpeg
ONE_NORM - gov.nih.mipav.model.structures.jama.SuperLU.norm_t
oneBasedLUTCheckBoxImage - Variable in class gov.nih.mipav.view.JPanelHistogram: sets the minimum LUT value to (1,1,1)
oneBasedLUTCheckBoxImageB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
oneButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
oneDButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
OnEdgeInsert(ModelSurfaceTopology.Edge, boolean, ModelSurfaceTopology.EdgeAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnEdgeInsert(ModelSurfaceTopology.Edge, boolean, ModelSurfaceTopology.EdgeAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
OnEdgeRemove(ModelSurfaceTopology.Edge, boolean, ModelSurfaceTopology.EdgeAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnEdgeRemove(ModelSurfaceTopology.Edge, boolean, ModelSurfaceTopology.EdgeAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
onef2(double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes
oneFile - Variable in class gov.nih.mipav.model.file.FileMetaImage: If true, header and data both stored in .mha file.
oneFile - Variable in class gov.nih.mipav.model.file.FileNIFTI: If true, header and data both stored in .nii file.
oneFile - Variable in class gov.nih.mipav.model.file.FileNRRD: If true, header and data both stored in .nrrd file.
oneFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: DOCUMENT ME!
oneFile - Variable in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: DOCUMENT ME!
oneFileStorage - Variable in class gov.nih.mipav.model.file.FileNRRD: True for .nrrd file with header and data in the same file.
onefiveTField - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
oneJacobiIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
oneJacobiIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
oneJacobiIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
onePixel(short[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Used by ultimate erode to simplify code a little.
onePixel(short[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Used by ultimate erode to simplify code a little.
onePixel(short[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Used by ultimate erode to simplify code a little.
ONEPSM - Variable in class gov.nih.mipav.model.algorithms.CVODES
oner(double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
oner(DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
oneSmooth - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
oneSmooth - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
oneSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
oneToZeroLUTAdjust() - Method in class gov.nih.mipav.model.structures.ModelLUT: The purpose of this method is to adjust the zero index of the LUT from (1, 1, 1) to (0, 0, 0) The reason is so image A and image B are not blended throughout by default.
oneTransLimit - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
OneWayANOVA(double[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: One-way analysis of variance (ANOVA).
online - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
online_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ONLINE_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageReduceEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect: This function is called in LoadPrograms once the shader programs are created.
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ScaledTextureEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: This function is called in LoadPrograms once the shader programs are created.
OnLoadPrograms(int, Program, Program, Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect
ONLY_FILLS_ONE_OUTPUT_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
ONLY_REAL_ROOTS - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
ONLY_REAL_ROOTS - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
onlyActiveRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
OnlyFillsOneOutputFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.OnlyFillsOneOutputFunctor
onlyFrequencyFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
onlyFrequencyFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
onlyFrequencyFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
onlyInit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
onlyWhitespace(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
onOffCheckBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light turn on/off check box.
onOffCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light turn on/off check box.
onOffLabel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Light turn on/off label.
onOffLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Light turn on/off label.
onPostUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: An abstract function that allows derived classes to implement any desired behavior after the PDE solver applies its update function.
onPostUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Swap the buffers for the next pass of the PDE solver.
onPostUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Swap the buffers for the next pass of the PDE solver.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The override of LsePdeFilter2.onPreUpdate.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The override of LsePdeFilter3.onPreUpdate.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: The function onPreUpdate was abstractly defined in the LsePdeFilter base class.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: The function onPreUpdate was abstractly defined in the LsePdeFilter base class.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: An abstract function that allows derived classes to implement any desired behavior before the PDE solver applies its update function.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Recompute the boundary values when Neumann conditions are in effect.
onPreUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Recompute the boundary values when Neumann conditions are in effect.
onRight(ModelTriangleMesh, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: onRight determines if a given point on a triangle, kSide, is to the right of or to the left of the vector specified by the vertices kPrev - kPoint.
onRight(TriMesh, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: onRight determines if a given point on a triangle, kSide, is to the right of or to the left of the vector specified by the vertices kPrev - kPoint.
onTop - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: for the use of the user-notifier.
OnTriangleInsert(ModelSurfaceTopology.Triangle, boolean, ModelSurfaceTopology.TriangleAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnTriangleInsert(ModelSurfaceTopology.Triangle, boolean, ModelSurfaceTopology.TriangleAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
OnTriangleRemove(ModelSurfaceTopology.Triangle, boolean, ModelSurfaceTopology.TriangleAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnTriangleRemove(ModelSurfaceTopology.Triangle, boolean, ModelSurfaceTopology.TriangleAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
onUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: An abstract function for the update function of the PDE solver.
onUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Iterate over all the pixels and call onUpdate(x,y) for each pixel that is not masked out.
onUpdate() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Iterate over all the voxels and call onUpdate(x,y,z) for each voxel that is not masked out.
onUpdate(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseCurvatureFlow2: The per-pixel update function of the PDE solver.
onUpdate(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve2: The override of LsePdeFilter2.onUpdate.
onUpdate(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur2: The per-pixel update function of the PDE solver.
onUpdate(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic2: The per-pixel update function of the PDE solver.
onUpdate(int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: An abstract function that allows per-pixel processing by the PDE solver.
onUpdate(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseCurvatureFlow3: The per-voxel update function of the PDE solver.
onUpdate(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseEvolve3: The override of LsePdeFilter3.onUpdate.
onUpdate(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGaussianBlur3: The per-voxel update function of the PDE solver.
onUpdate(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseGradientAnisotropic3: The per-voxel update function of the PDE solver.
onUpdate(int, int, int) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: An abstract function that allows per-voxel processing by the PDE solver.
OnVertexInsert(ModelSurfaceTopology.Vertex, boolean, ModelSurfaceTopology.VertexAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnVertexInsert(ModelSurfaceTopology.Vertex, boolean, ModelSurfaceTopology.VertexAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
OnVertexRemove(ModelSurfaceTopology.Vertex, boolean, ModelSurfaceTopology.VertexAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the base class ModelSurfaceTopology member function.
OnVertexRemove(ModelSurfaceTopology.Vertex, boolean, ModelSurfaceTopology.VertexAttribute) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Stub provided for overriding in derived classes.
oob_prediction - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictTreesInThread
oob_sampleIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
oocPointIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
oocPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
op - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 278 - 4 bytes operator.
op - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
op - Variable in class gov.nih.mipav.view.ViewMenuBuilder: Menu dragging listener
op(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
op(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
opacity - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Opacity of surface.
opacity - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
opacity - Variable in class gov.nih.mipav.model.structures.VOI: When in the solid display mode indicates how opaque the VOI should be.
opacity - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Opacity number.
opacity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: opacity of burn.
opacity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
opacity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point opacity.
opacity - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageShearWarp: opacity value used by the paint brush.
opacity - Variable in class gov.nih.mipav.view.ViewJFrameBase: Opacity value of the paint color.
opacity - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The opacity of the paint, between 0 (transparent) and 1 (opaque).
Opacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
Opacity - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OPACITY - gov.nih.mipav.view.ViewJSlider.SliderType
OPACITY - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
OPACITY - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
OPACITY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
OPACITY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
OPACITY - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
OPACITY - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Opacity of paint.
OPACITY - Static variable in class gov.nih.mipav.view.ViewJSlider
OPACITY_COMPONENT_TAB_A - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
OPACITY_COMPONENT_TAB_A - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
OPACITY_COMPONENT_TAB_A_GM - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
OPACITY_COMPONENT_TAB_A_GM - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
OPACITY_COMPONENT_TAB_B - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
OPACITY_COMPONENT_TAB_B - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
OPACITY_COMPONENT_TAB_B_GM - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
OPACITY_COMPONENT_TAB_B_GM - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
OpacityA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OpacityB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
opacityControlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Opacity control panel.
opacityControlPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Opacity control panel.
opacityCount - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Opacity slider event count.
opacityDialog - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
opacityEvents - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity: Opacity slider changed events, which is used by the mouse recorder.
opacityFunctA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
opacityFunctB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
opacityFunction - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The opacity transfer function, saved if non-null.
OpacityGMA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OpacityGMB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OpacityGMOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OpacityGMOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
opacityLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The opacity slider label.
opacityLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: The opacity slider label.
opacityLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The opacity slider label.
opacityLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
opacityLabelX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The opacity slider label.
opacityLabelX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The opacity slider label.
opacityLabelY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The opacity slider label.
opacityLabelY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The opacity slider label.
opacityLabelZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The opacity slider label.
opacityLabelZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The opacity slider label.
opacityPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
opacitySlider - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Opacity slider.
opacitySlider - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: The opacity slider for the selected VOI
opacitySlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Opacity slider, not enabled yet.
opacitySlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point surface opacity slider.
opacitySlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Opacity slider, not enabled yet.
opacitySlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Opacity sliders for when this renderer is displayed as a stand-alone app.
opacitySliderLabels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The labels below the opacity slider.
opacitySliderLabels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point surface opacity slider label.
opacitySliderLabels - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The labels below the opacity slider.
opacitySliderLabelsA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: The labels below the opacity slider.
opacitySliderLabelsA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

The labels below the opacity slider.
opacitySliderLabelsB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: The labels below the opacity slider.
opacitySliderLabelsB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

The labels below the opacity slider.
opacitySliderLabelsGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
opacitySliderLabelsGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
opacitySliderLabelsGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
opacitySliderLabelsGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
opacitySliderLabelsX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The labels below the opacity slider.
opacitySliderLabelsX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The labels below the opacity slider.
opacitySliderLabelsY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The labels below the opacity slider.
opacitySliderLabelsY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The labels below the opacity slider.
opacitySliderLabelsZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: The labels below the opacity slider.
opacitySliderLabelsZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: The labels below the opacity slider.
opacitySliderX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Opacity slider, not enabled yet.
opacitySliderX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Opacity slider, not enabled yet.
opacitySliderY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Opacity slider, not enabled yet.
opacitySliderY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Opacity slider, not enabled yet.
opacitySliderZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Opacity slider, not enabled yet.
opacitySliderZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Opacity slider, not enabled yet.
opacityTransferFn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
open() - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance
open() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Open new DICOMDIR file, if successful then close current box
open() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Opens the script as a text file and dumps it to the text area.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Open an image based on the suffix of the file.
open() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Open an image based on the suffix of the file.
open(boolean) - Method in class gov.nih.mipav.view.ViewOpenFileUI: Open an image based on the suffix of the file.
open(ModelImage) - Method in class gov.nih.mipav.view.ViewOpenPaintUI: Open a VOI array based on the suffix of the file.
open(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewOpenVOIUI: Open a VOI array based on the suffix of the file.
open(String, boolean, FileInfoBase) - Method in class gov.nih.mipav.view.ViewOpenFileUI: Open an image based on the suffix of the file.
open(String, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Open (and connect) a socket.
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
OPEN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
openAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
openAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
openAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
openAndRegisterNextVOI(String) - Method in class gov.nih.mipav.model.scripting.VOITable: Opens the next VOI for a given image from disk, then registers that VOI in the appropriate image.
openAnnotations(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
openBrush(String) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Opens a brush stored on disk (.png)
OpenCLAlgorithmBase - Class in gov.nih.mipav.model.algorithms: Abstract base class for implementing Algorithms in OpenCL.
OpenCLAlgorithmBase() - Constructor for class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
OpenCLAlgorithmBase(ModelImage, ModelImage, boolean, long) - Constructor for class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
OpenCLAlgorithmConvolver - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm convolves a kernel with a 2D, 3D or 4D image.
OpenCLAlgorithmConvolver() - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmConvolver
OpenCLAlgorithmDeconvolution - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm computes Deconvolution for a 3D or 4D image.
OpenCLAlgorithmDeconvolution(ModelImage, int, float[], boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmDeconvolution(ModelImage, ModelImage, int, float[], boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmDeconvolution(ModelImage, ModelImage, int, float[], boolean, int, boolean, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmDeconvolution(ModelImage, ModelImage, int, float[], float[], boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Dual image Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmDeconvolution(ModelImage, ModelImage, ModelImage, int, float[], float[], boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Dual image Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmDeconvolution(ModelImage, ModelImage, ModelImage, int, float[], float[], boolean, int, boolean, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: New Dual image Deconvolution algorithm, applies the deconvolution based on the sigma values and iterations to the input image.
OpenCLAlgorithmFFT - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
OpenCLAlgorithmFFT(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
OpenCLAlgorithmFFT(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
OpenCLAlgorithmGaussianBlur - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm computes the GaussianBlur of a 2D, 3D or 4D image.
OpenCLAlgorithmGaussianBlur(ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Creates a new AlgorithmGaussianBlur object.
OpenCLAlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Constructor which sets the source and destination images, the minimum and maximum progress value.
OpenCLAlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean, boolean, CLDevice.Type) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Constructor which sets the source and destination images, the minimum and maximum progress value.
OpenCLAlgorithmGradientMagnitude - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm computes the Gradient Magnitude of a 2D, 3D or 4D image.
OpenCLAlgorithmGradientMagnitude(ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
OpenCLAlgorithmGradientMagnitude(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
OpenCLAlgorithmLaplacian - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm computes the Laplacian of a 2D, 3D or 4D image.
OpenCLAlgorithmLaplacian(ModelImage, float[], boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Constructs a Laplacian algorithm object.
OpenCLAlgorithmLaplacian(ModelImage, ModelImage, float[], boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Constructs a Laplacian algorithm object.
OpenCLAlgorithmMarchingCubes - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
OpenCLAlgorithmMarchingCubes(ModelImage, int, boolean, boolean, boolean, float, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
OpenCLAlgorithmVolumeCrop - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters
OpenCLAlgorithmVolumeCrop(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
OpenCLAlgorithmVolumeNormals - Class in gov.nih.mipav.model.algorithms.filters.OpenCL.filters: OpenCL Algorithm implementation calculate the volume normals of a 3D image.
OpenCLAlgorithmVolumeNormals(ModelImage, ModelImage, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: Create an OpenCL Algorithm for calculating the volume normals.
OpenCLInfo - Class in gov.nih.mipav.model.algorithms: Displays OpenCL information in a table.
OpenCLInfo() - Constructor for class gov.nih.mipav.model.algorithms.OpenCLInfo
openContour - Variable in class gov.nih.mipav.view.JPanelStatisticsList: Whether this list is dealing with open contours.
openDicomMatrixFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Returns a dicomMatrix file objects, based on the user-selected filed from the FileChooser dialog.
openDirButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
OpEndPic - Static variable in class gov.nih.mipav.model.file.FileLIFF
openDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
openedFile - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
openedImageCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
opener - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
openFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
OpenFileInfo(String, String, boolean) - Constructor for class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Creates a new OpenFileInfo object.
openFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D: Returns an array of File objects, based on the user-selected files from the FileChooser dialog.
openFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh: Returns an array of File objects, based on the user-selected files from the FileChooser dialog.
openFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack
openFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: Returns an array of File objects, based on the user-selected files from the FileChooser dialog.
openFiles(boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Returns an array of File objects, based on the user-selected files from the FileChooser dialog.
openFiles(String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyReader
openFiles(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyWriter
openForRead(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: Open file input stream for file.
openForWrite(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: Open file output stream for the file.
openFrame(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage: ViewOpenFrameInterface function to create a new frame from a result image (jdialog produced)
openFrame(ModelImage) - Method in interface gov.nih.mipav.view.ViewOpenFrameInterface
openGVF() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Open an image based on the suffix of the file.
openIFD(FileInfoLSM) - Method in class gov.nih.mipav.model.file.FileLSM: Reads and decodes IFDs (Image File Directory).
openIFD(FileInfoSTK) - Method in class gov.nih.mipav.model.file.FileSTK: Reads and decodes IFDs (Image File Directory).
openIFD(FileInfoSVS) - Method in class gov.nih.mipav.model.file.FileSVS: Reads and decodes IFDs (Image File Directory).
openIFD(FileInfoTiff) - Method in class gov.nih.mipav.model.file.FileTiff: Reads and decodes IFDs (Image File Directory).
openImage() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
openImage(int, int, int, Dimension) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Will read a series of images and put them into a frame.
openImageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: This method opens an image and puts it into a frame.
openImageFrame(String) - Method in class gov.nih.mipav.view.ViewUserInterface: Open an image and put it into a new frame, given the image file name.
openImageFrame(String, boolean) - Method in class gov.nih.mipav.view.ViewUserInterface: Open an image or images and put it into a new frame, given the image file name.
openImageFrame(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface: Open an image and put it into a new frame, given the image file name.
openImageNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
openImagesInTiledFormatBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: opens images in tiled format
openImageWithFrame(ScriptImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: DOCUMENT ME!
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
OPENING_BY_RECONSTRUCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
OPENING_STR - Static variable in class gov.nih.mipav.view.ViewUserInterface: String to use as the progress bar opening prefix.
openingByReconstructionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
openingMenuBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Menu bar.
openingMenuBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Menu bar.
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
openingMenuBar - Variable in class gov.nih.mipav.view.ViewUserInterface: Initial menubar for MIPAV.
openItem - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Menu item that holds the list of paintbrushes to open (for editing)
openJSON() - Method in class gov.nih.mipav.view.ViewOpenFileUI
openJSONImageFrames() - Method in class gov.nih.mipav.view.ViewUserInterface
openLastImage(int) - Method in class gov.nih.mipav.view.ViewUserInterface: Attempts to open an image from the quicklist.
openLattice(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
openLUTFile(String) - Static method in class gov.nih.mipav.model.structures.ModelLUT
openLUTFile(String) - Static method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.
openNeuriteCurves(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
openNeuriteCurves(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
openNew() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Opens Excel data (tab-delimited fields) into a new graph.
openNewFrame(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: JDialogs that create result image's in new frame should call this method instead of creating a new ViewJFrameImage
openNLT() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
openOtherOrientation(ModelImage) - Method in class gov.nih.mipav.view.ViewOpenVOIUI: Open a VOI array based on the suffix of the file.
openOtherOrientationVOI(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
openPaint(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
openPolylines(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: The action taken when the Add button is clicked in the JPanelSurface class.
openSame() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Opens Excel data (tab-delimited fields) into this graph.
openScriptFile(String) - Method in class gov.nih.mipav.model.scripting.ParserEngine: Open a script file and prepare a reader for it.
openScriptString(String) - Method in class gov.nih.mipav.model.scripting.ParserEngine: Prepare a reader for a given string of script data.
openSeparate - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
openSeparateOption - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
openStraightAnnotations(String, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
openStraightNeuriteCurves(ModelImage, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
openSurfaces(ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: The action taken when the Add button is clicked in the JPanelSurface class.
openSurfaces(ModelImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: The action taken when the Add button is clicked in the JPanelSurface class.
openSurfaces(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D: The action taken when the Add button is clicked in the JPanelSurface class.
openT2Button - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
openTag(String, boolean) - Method in class gov.nih.mipav.model.file.FileXML: Simple function to write an xml formatted open ended tag (value not included).
openTag(String, Vector<FileXML.XMLAttributes>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Writes a closed tag where no value is specified, only attributes.
openUDLUTandTransferFunct() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Open the user defined LUT table and transfer function.
openURLInBrowser(String) - Static method in class gov.nih.mipav.view.MipavUtil: Opens a URL in the user's default browser
openVOI(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: This method opens an existing VOI.
openVOI(boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method opens an existing VOI.
openVOI(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase: This method opens an existing VOI.
operating_system - Variable in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: DOCUMENT ME!
operating_system - Variable in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Operating system type windows or Mac.
OperatingSystem() - Constructor for enum gov.nih.mipav.view.Preferences.OperatingSystem
operation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: operation type
operation - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.showProgress
operationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
operationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
operationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
operationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
operationType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
operationType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
operationType - Variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: operation type
operator - Variable in class gov.nih.mipav.model.file.FileGESigna4X
operator - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
operator() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
operator(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunctorExample
operator(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CurveFittingFunctorExample
operator(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ExponentialFunctor
operator(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OnlyFillsOneOutputFunctor
operator(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
operator(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EasyFunctor
operator(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalFunctor
operator(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.VertexTotalOrderingInteger
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverStateUpdatingCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IterationCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LoggingCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.StateUpdatingCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.AbortingIterationCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.FakeIterationCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback
operator(CeresSolver.IterationSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SucceedingIterationCallback
operator(CeresSolver.TripletSparseMatrix, CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
operator(Vector<double[]>, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.MyCostFunctor
operator(Vector<double[]>, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.MyThreeParameterCostFunctor
Operator(int, String, String) - Constructor for enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator
operatorplusplus() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
operatorplusplus(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator
operatorplusplus(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator
operatorplusplus(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator
opj_alloc_tile_component_data(FileJPEG2000.opj_tcd_tilecomp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_bytein(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_getbit(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_inalign(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_init_dec(FileJPEG2000.opj_bio_t, byte[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_numbytes(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_read(FileJPEG2000.opj_bio_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_bio_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t
opj_c13318 - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_CLRSPC_CMYK - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_CLRSPC_EYCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_CLRSPC_GRAY - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_CLRSPC_SRGB - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_CLRSPC_SYCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_codec_private_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_codec_private_t
opj_codestream_index_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t
opj_copy_image_header(FileJPEG2000.opj_image_t, FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Copy only header of image and its component header (no data are copied) if dest image have data, they will be freed
opj_cp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t
OPJ_CPRL - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_D_(int[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_DD_(int[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dec_memory_marker_handler_t(int, int, int) - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_dec_memory_marker_handler_t
opj_decoding_param_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_decoding_param_t
opj_decompress_main() - Method in class gov.nih.mipav.model.file.FileJPEG2000: OPJ_DECOMPRESS MAIN
opj_decompress_parameters() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters
opj_destroy_codec(FileJPEG2000.opj_codec_private_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_DISABLE_TPSOT_FIX - Variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dparameters_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t
opj_dwt_alpha - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_beta - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_decode(FileJPEG2000.opj_tcd_tilecomp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_decode_1(FileJPEG2000.opj_dwt_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_DWT_DECODE_1 - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_decode_1_(int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_decode_real(FileJPEG2000.opj_tcd_tilecomp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_decode_tile(FileJPEG2000.opj_tcd_tilecomp_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_delta - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_gamma - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_getgain(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_DWT_GETGAIN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_getgain_real(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_DWT_GETGAIN_REAL - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_interleave_h(FileJPEG2000.opj_dwt_t, int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_interleave_v(FileJPEG2000.opj_dwt_t, int[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_dwt_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
opj_encoding_param_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_encoding_param_t
opj_get_all_encoding_parameters(FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t, int, int[], int[], int[], int[], int[], int[], int[], int[], int[][]) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Gets the encoding parameters needed to update the coding parameters and all the pocs.
OPJ_HAVE_LIBLCMS1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_HAVE_LIBLCMS2 - Variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_image_cmptparm_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t
opj_image_comp_header_update(FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Updates the components characteristics of the image from the coding parameters.
opj_image_comp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t
opj_image_create(int, FileJPEG2000.opj_image_cmptparm_t[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_image_destroy(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_image_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t
opj_int_clamp(int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Clamp an integer inside an interval
opj_j2k_add_mct(FileJPEG2000.opj_tcp_t, FileJPEG2000.opj_image_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_add_mhmarker(FileJPEG2000.opj_codestream_index_t, int, long, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_add_tlmarker(int, FileJPEG2000.opj_codestream_index_t, int, long, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_allocate_tile_element_cstr_index(FileJPEG2000.opj_j2k_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_copy_default_tcp_and_create_tcd(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_copy_tile_component_parameters(FileJPEG2000.opj_j2k_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_copy_tile_quantization_parameters(FileJPEG2000.opj_j2k_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_dec_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_dec_t
opj_j2k_decode(FileJPEG2000.opj_j2k_t, RandomAccessFile, FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_decode_one_tile(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_decode_tile(FileJPEG2000.opj_j2k_t, int, byte[], int[], int, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_decode_tiles(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_J2K_DEFAULT_CBLK_DATA_SIZE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_J2K_DEFAULT_HEADER_SIZE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Number of maximum sub-band linked to number of resolution level
OPJ_J2K_DEFAULT_NB_SEGS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Maximum allowed size for filenames
opj_j2k_get_marker_handler(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_get_sot_values(byte[], int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_get_tile(FileJPEG2000.opj_j2k_t, RandomAccessFile, FileJPEG2000.opj_image_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_J2K_MAXBANDS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Number of maximum resolution level authorized
OPJ_J2K_MAXRLVLS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < Maximum number of packet parts expected by JPWL: increase at your will
OPJ_J2K_MCC_DEFAULT_NB_RECORDS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_J2K_MCT_DEFAULT_NB_RECORDS - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_merge_ppm(FileJPEG2000.opj_cp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Merges all PPM markers read (Packed headers, main header)
opj_j2k_merge_ppt(FileJPEG2000.opj_tcp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Merges all PPT markers read (Packed packet headers, tile-part header)
opj_j2k_need_nb_tile_parts_correction(RandomAccessFile, int, boolean[]) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_cbd(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a CBD marker (Component bit depth definition)
OPJ_J2K_READ_CBD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_coc(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a COC marker (Coding Style Component)
OPJ_J2K_READ_COC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_cod(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a COD marker (Coding Styke defaults)
OPJ_J2K_READ_COD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_com(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a COM marker (comments)
OPJ_J2K_READ_COM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_crg(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a CRG marker (Component registration)
OPJ_J2K_READ_CRG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_float32_to_float(byte[], float[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_float32_to_int32(byte[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_float64_to_float(byte[], float[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_float64_to_int32(byte[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_header_procedure(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_int16_to_float(byte[], float[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_int16_to_int32(byte[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_int32_to_float(byte[], float[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_int32_to_int32(byte[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_mcc(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a MCC marker (Multiple Component Collection)
OPJ_J2K_READ_MCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_mco(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a MCO marker (Multiple Component Transform Ordering)
OPJ_J2K_READ_MCO - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_mct(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a MCT marker (Multiple Component Transform)
OPJ_J2K_READ_MCT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_plm(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a PLM marker (Packet length, main header marker)
OPJ_J2K_READ_PLM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_plt(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a PLT marker (Packet length, tile-part header)
OPJ_J2K_READ_PLT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_poc(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a POC marker (Progression Order Change)
OPJ_J2K_READ_POC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_ppm(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a PPM marker (Packed packet headers, main header)
OPJ_J2K_READ_PPM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_ppt(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a PPT marker (Packed packet headers, tile-part header)
OPJ_J2K_READ_PPT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_qcc(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a QCC marker (Quantization component)
OPJ_J2K_READ_QCC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_qcd(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a QCD marker (Quantization defaults)
OPJ_J2K_READ_QCD - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_rgn(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a RGN marker (Region Of Interest)
OPJ_J2K_READ_RGN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_siz(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a SIZ marker (image and tile size)
OPJ_J2K_READ_SIZ - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_soc(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a SOC marker (Start of Codestream)
opj_j2k_read_sod(FileJPEG2000.opj_j2k_t, RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_sot(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_J2K_READ_SOT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: < INSEC marker value (Part 8: Secure JPEG 2000)
opj_j2k_read_SPCod_SPCoc(FileJPEG2000.opj_j2k_t, int, byte[], int, int[]) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_SQcd_SQcc(FileJPEG2000.opj_j2k_t, int, byte[], int, int[]) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a SQcd or SQcc element, i.e. the quantization values of a band in the QCD or QCC.
opj_j2k_read_tile_header(FileJPEG2000.opj_j2k_t, int[], int[], int[], int[], int[], int[], int[], boolean[], RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_tlm(FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reads a TLM marker (Tile Length Marker)
OPJ_J2K_READ_TLM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_read_unk(FileJPEG2000.opj_j2k_t, RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_set_decode_area(FileJPEG2000.opj_j2k_t, FileJPEG2000.opj_image_t, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_j2k_t
opj_j2k_tcp_data_destroy(FileJPEG2000.opj_tcp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_tcp_destroy(FileJPEG2000.opj_tcp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_j2k_update_image_data(FileJPEG2000.opj_tcd_t, byte[], int[], FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_K - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_LRCP - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_lrintf(float) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_marker_info_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_marker_info_t
opj_mct_data_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_mct_data_t
opj_mct_decode(int[], int[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mct_decode_custom(float[], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mct_decode_real(int[], int[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_bytein(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_create() - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_decode(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_destroy(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_init_dec(FileJPEG2000.opj_mqc_t, byte[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_lpsexchange(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_mpsexchange(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_renormd(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_resetstates(FileJPEG2000.opj_mqc_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_setcurctx(FileJPEG2000.opj_mqc_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Set the current context used for coding/decoding
opj_mqc_setstate(FileJPEG2000.opj_mqc_t, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_mqc_state_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_state_t
opj_mqc_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
opj_packet_info_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_packet_info_t
OPJ_PATH_LEN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_PCRL - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_comp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_comp_t
opj_pi_create(FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_create_decode(FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_destroy(FileJPEG2000.opj_pi_iterator_t[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_iterator_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t
opj_pi_next(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_next_cprl(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_next_lrcp(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_next_pcrl(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_next_rlcp(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_next_rpcl(FileJPEG2000.opj_pi_iterator_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_resolution_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_resolution_t
opj_pi_update_decode_not_poc(FileJPEG2000.opj_pi_iterator_t[], FileJPEG2000.opj_tcp_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_pi_update_decode_poc(FileJPEG2000.opj_pi_iterator_t[], FileJPEG2000.opj_tcp_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_poc_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t
opj_ppx() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_ppx
OPJ_PREC_MODE_CLIP - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_PREC_MODE_SCALE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_precision() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_precision
opj_procedure_list_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_procedure_list_t
OPJ_PROG_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000: Supported codec
opj_raw_decode(FileJPEG2000.opj_raw_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_raw_init_dec(FileJPEG2000.opj_raw_t, byte[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_raw_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t
OPJ_RLCP - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_RPCL - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
OPJ_S_(int[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_set_default_decoder_parameters(FileJPEG2000.opj_dparameters_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_simple_mcc_decorrelation_data_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_simple_mcc_decorrelation_data_t
OPJ_SS_(int[], int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_stepsize_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_stepsize_t
opj_stream_create_default_file_stream(String, boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_stream_get_number_byte_left(RandomAccessFile) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_allocate_buffers(FileJPEG2000.opj_t1_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_create(boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Creates a new Tier 1 handle and initializes the look-up tables of the Tier-1 coder/decoder
opj_t1_dec_clnpass(FileJPEG2000.opj_t1_t, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_clnpass_step(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_clnpass_step_partial(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_clnpass_step_vsc(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int, boolean, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_mqc(FileJPEG2000.opj_t1_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_mqc_vsc(FileJPEG2000.opj_t1_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_raw(FileJPEG2000.opj_t1_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_step_mqc(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_step_mqc_vsc(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_refpass_step_raw(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_mqc(FileJPEG2000.opj_t1_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_mqc_vsc(FileJPEG2000.opj_t1_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_raw(FileJPEG2000.opj_t1_t, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_step_mqc(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_step_mqc_vsc(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_dec_sigpass_step_raw(FileJPEG2000.opj_t1_t, short[], int, int[], int, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_decode_cblk(FileJPEG2000.opj_t1_t, FileJPEG2000.opj_tcd_cblk_dec_t, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_decode_cblks(FileJPEG2000.opj_t1_t, FileJPEG2000.opj_tcd_tilecomp_t, FileJPEG2000.opj_tccp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_destroy(FileJPEG2000.opj_t1_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Destroys a previously created T1 handle
opj_t1_getctxno_mag(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_getctxno_sc(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_getctxno_zc(int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_getspb(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t1_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t
opj_t1_updateflags(short[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_create(FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Creates a Tier 2 handle
opj_t2_decode_packet(FileJPEG2000.opj_t2_t, FileJPEG2000.opj_tcd_tile_t, FileJPEG2000.opj_tcp_t, FileJPEG2000.opj_pi_iterator_t, byte[], int[], int[], int, FileJPEG2000.opj_packet_info_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_decode_packets(FileJPEG2000.opj_t2_t, int, FileJPEG2000.opj_tcd_tile_t, byte[], int[], int, FileJPEG2000.opj_codestream_index_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_destroy(FileJPEG2000.opj_t2_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_getcommacode(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_getnumpasses(FileJPEG2000.opj_bio_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_init_seg(FileJPEG2000.opj_tcd_cblk_dec_t, int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_read_packet_data(FileJPEG2000.opj_t2_t, FileJPEG2000.opj_tcd_tile_t, FileJPEG2000.opj_pi_iterator_t, byte[], int[], int[], int, FileJPEG2000.opj_packet_info_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_read_packet_header(FileJPEG2000.opj_t2_t, FileJPEG2000.opj_tcd_tile_t, FileJPEG2000.opj_tcp_t, FileJPEG2000.opj_pi_iterator_t, boolean[], byte[], int[], int[], int, FileJPEG2000.opj_packet_info_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_skip_packet(FileJPEG2000.opj_t2_t, FileJPEG2000.opj_tcd_tile_t, FileJPEG2000.opj_tcp_t, FileJPEG2000.opj_pi_iterator_t, byte[], int[], int[], int, FileJPEG2000.opj_packet_info_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_skip_packet_data(FileJPEG2000.opj_t2_t, FileJPEG2000.opj_tcd_tile_t, FileJPEG2000.opj_pi_iterator_t, int[], int, FileJPEG2000.opj_packet_info_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_t2_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_t2_t
opj_tccp_info_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t
opj_tccp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t
opj_tcd_band_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
opj_tcd_cblk_dec_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
opj_tcd_code_block_dec_allocate(FileJPEG2000.opj_tcd_cblk_dec_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Allocates memory for a decoding code block.
opj_tcd_create(boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Create a new TCD handle
opj_tcd_dc_level_shift_decode(FileJPEG2000.opj_tcd_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_decode_tile(FileJPEG2000.opj_tcd_t, byte[], int, int, FileJPEG2000.opj_codestream_index_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_dwt_decode(FileJPEG2000.opj_tcd_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_get_decoded_tile_size(FileJPEG2000.opj_tcd_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_image_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_image_t
opj_tcd_init(FileJPEG2000.opj_tcd_t, FileJPEG2000.opj_image_t, FileJPEG2000.opj_cp_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_init_decode_tile(FileJPEG2000.opj_tcd_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_init_tile(FileJPEG2000.opj_tcd_t, int, boolean, float) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_mct_decode(FileJPEG2000.opj_tcd_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_precinct_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
opj_tcd_resolution_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
opj_tcd_seg_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
opj_tcd_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t
opj_tcd_t1_decode(FileJPEG2000.opj_tcd_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_t2_decode(FileJPEG2000.opj_tcd_t, byte[], int[], int, FileJPEG2000.opj_codestream_index_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcd_tile_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
opj_tcd_tilecomp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
opj_tcd_update_tile_data(FileJPEG2000.opj_tcd_t, byte[], int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tcp_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t
opj_tgt_create(int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tgt_decode(FileJPEG2000.opj_bio_t, FileJPEG2000.opj_tgt_tree_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tgt_destroy(FileJPEG2000.opj_tgt_tree_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tgt_init(FileJPEG2000.opj_tgt_tree_t, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Reinitialises a tag-tree from an existing one.
opj_tgt_node_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_node_t
opj_tgt_reset(FileJPEG2000.opj_tgt_tree_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_tgt_tree_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_tree_t
opj_tile_index_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t
opj_tile_info_v2_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t
opj_tp_index_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_tp_index_t
opj_uint_floorlog2(int) - Method in class gov.nih.mipav.model.file.FileJPEG2000: Get logarithm of an integer and round downwards
opj_v4_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_v4_t
opj_v4dwt_decode(FileJPEG2000.opj_v4dwt_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_v4dwt_decode_step1(FileJPEG2000.opj_v4_t[], int, int, float) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_v4dwt_decode_step2(FileJPEG2000.opj_v4_t[], int, FileJPEG2000.opj_v4_t[], int, int, int, float) - Static method in class gov.nih.mipav.model.file.FileJPEG2000
opj_v4dwt_interleave_h(FileJPEG2000.opj_v4dwt_t, float[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_v4dwt_interleave_v(FileJPEG2000.opj_v4dwt_t, float[], int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
opj_v4dwt_t() - Constructor for class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t
OPJ_VALIDATION_SIZE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
opj_version() - Method in class gov.nih.mipav.model.file.FileJPEG2000
oppositeOrient(int) - Static method in class gov.nih.mipav.model.file.FileInfoBase: Helper method that returns the opposite axis orientation of the one sent in; that is, R2L for L2R, A2P for P2A, etc.
OPQUD1(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ops - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t
opt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
opt - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
opt() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
opt_corner_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
opt_num_kp_levels - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
opt_peak_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
opt_sigma_n - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
opt_sigma0 - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
optgap - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
OPTICAL - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Optical Files (for ophthalmology) (*.avi; *.bmp; *.jpg; *.pict; *.tif; *.tiff; *.img; *.psd).
opticalAxisAvrg - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
OpticalFlowToolbox - Class in gov.nih.mipav.model.algorithms
OpticalFlowToolbox() - Constructor for class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
OPTIMAL(GenericPolygonClipper.gpc_vertex[], int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
optimal_point - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
optimal1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
optimal2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
optimalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
optimalPath - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The optimal path.
optimalPath - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The optimal path.
OptimizationMovie(Vector<CAAMOptState>, ModelSimpleImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Wrapper to visualizes the iterations during a model search.
OptimizationMovie(Vector<CAAMOptState>, ModelSimpleImage, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Visualizes the iterations during a model search.
optimize(Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Finds optimal point for the given initial point
optimizeAtGridPoints() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
optimizeBlock(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Optimize several initial points.
optimizeContours(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
optimizeContours(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
OptimizedAdjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
OptimizedPPFT(double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
optimizedtansum(double[][], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
OptimizeModel(ModelSimpleImage, CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Wrapper for model optimization.
OptimizeModel(ModelSimpleImage, CAAMShape, CDVector, int, Vector<CAAMOptState>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Wrapper for model optimization
OptimizeModel(ModelSimpleImage, CAAMShape, CDVector, int, Vector<CAAMOptState>, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Performs AAM optimization of a shape containing initial pose and a set of model parameters (c).
OptimizeModel(ModelSimpleImage, CAAMShape, CDVector, int, Vector<CAAMOptState>, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Performs AAM optimization of a shape containing initial pose using a model pyramid.
OptimizeModelByFineTuning(ModelSimpleImage, CAAMShape, CDVector, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Perform general-purpose optimization of the AAM using simulated annealing, conjugate gradient, steepest descent, BGFS or pattern search.
optionalPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: panels
optionalStructuresLocation - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
optionFlag - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Flag to the java-runtime (as used in the XML-files) to indicate a memory-option.
optionPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolver
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirection
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Solver
options - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy
options - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
options - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
options() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch
options() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
options() - Method in class gov.nih.mipav.view.ViewUserInterface: Display Options dialog for all mipav options (including image specific options) to allow user to adjust display in one place.
Options() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
Options() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner.Options
Options() - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ConjugateGradientsSolver
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Minimizer
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.Fixture
options_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
options_conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
optionsDialog - Variable in class gov.nih.mipav.view.ViewUserInterface: Dialog that allows changes to the amount of heap requested of the system by the java Virtual Machine for MIPAV during java start.
optionsGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: button group for radio buttons
optionsGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter: button group for radio buttons
optionsGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength: button group for radio buttons
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
optionsPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
optionsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
optionsSet - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
optionsValid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
OptMethod() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: name of optimization method
OptMethod() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: Optimization method type
OptMethod() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: Optimization function type.
OptMethod() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: optimizaitn method type.
OptMethod() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: type of optimization method.
optovar - Variable in class gov.nih.mipav.model.file.FileInfoZVI
OptResults(CDVector, CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: Returns the optimisation results as c, shape and error.
optype - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
opType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Operation to be performed on the images (i.e.
opType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Operation to be performed on the images (i.e.
opType - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: operation type....for now set to ADD
opType - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
opType - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
or - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
or - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
or - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
or - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
OR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: operation constants
OR - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
OralCntrstAgent - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 89 - 17 bytes.
orange - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
orange - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
orange - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
orangeColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
ORBIT - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback: DOCUMENT ME!
orButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
order - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
order - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec
order - Variable in class gov.nih.mipav.model.algorithms.CVODES.PolynomialDataMemRec
order - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
order - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
order - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
order(Vector<Double>, boolean) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
order_children(int, int[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
orderAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: DOCUMENT ME!
orderArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
OrderedGroups() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
OrderedGroupsEmptyOrderedGroupBehavesCorrectly() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
OrderIndpTransparencyEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render: This class sets up the final pass in rendering multiple semi-transparent surfaces.
OrderIndpTransparencyEffect(Texture[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.OrderIndpTransparencyEffect: Creates a new OrderIndpTransparencyEffect for the final rendering pass.
OrderingToGroupSizes(CeresSolver.OrderedGroups<double[]>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
orders - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
orders - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
orders - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
orderSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
orderSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
Orf - gov.nih.mipav.model.file.MetadataExtractor.FileType: Olympus camera raw.
organ - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
orgDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
orgImDTIparams - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices
orgResol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Distance per pixel in millimeters.
orgResol - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
orgResol - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
orgSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
orgSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
orgVol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
orgVol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
orgXDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
orgXDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
ori - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Axes orientations.
ORI_A2P_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Anterior to Posterior.
ORI_A2P_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Anterior to Posterior.
ori_grad_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ORI_I2S_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Inferior to Superior.
ORI_I2S_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Inferior to Superior.
ORI_L2R_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Left to Right.
ORI_L2R_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Left to Right.
ori_ncolumnsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
ori_nrowsField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
ORI_P2A_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Posterior to Anterior.
ORI_P2A_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Posterior to Anterior.
ORI_R2L_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Right to Left.
ORI_R2L_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Right to Left.
ori_rad_fctr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ORI_S2I_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation Superior to Inferior.
ORI_S2I_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation Superior to Inferior.
ori_sig_fctr - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
ORI_UNKNOWN_TYPE - gov.nih.mipav.model.file.FileInfoBase.AxisOrientation: Axis orientation unknown.
ORI_UNKNOWN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axis orientation unknown.
orient - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Axis orientations of image.
orient - Variable in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.model.file.FileGESigna4X
orient - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.model.file.FileMagnetomVision: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
orient - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: DOCUMENT ME!
orient - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Orientations of the three axes.
orientA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientA_inv - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
orientation - Variable in class gov.nih.mipav.model.file.FileGESigna4X
orientation - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Orientation - SAGITTAL, CORONAL, AXIAL.
orientation - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
orientation - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
orientation - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Orientation value corresponding to not the value of AlgorithmBrainExtractor.SAT_COR
orientation - Variable in class gov.nih.mipav.view.PatientSlice: This indicates which of the Patient coordinate systems the slice represents: either AXIAL, SAGITTAL, CORONAL, or UNKNOWN.
orientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: Orientation of this component image.
orientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
orientation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
orientation - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: orientation of the slice, may be AXIAL, CORONAL, SAGITTAL, or UNKNOWN_ORIENT.
orientation - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
orientation - Variable in class gov.nih.mipav.view.ViewJComponentLUT: DOCUMENT ME!
orientation - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable: DOCUMENT ME!
orientation - Variable in class gov.nih.mipav.view.VOIOrientationNode
ORIENTATION - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
ORIENTATION - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
orientationBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
orientationBox - Variable in class gov.nih.mipav.view.JPanelEditAxisOrientation: DOCUMENT ME!
orientationBox - Variable in class gov.nih.mipav.view.JPanelEditImageOrientation: DOCUMENT ME!
orientationBox - Variable in class gov.nih.mipav.view.JPanelEditOrientation: DOCUMENT ME!
orientationBox1 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientationBox2 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientationBox3 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientationField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
orientationFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Indicated the orientation of the dataset.
orientationOriginCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip: When checked, change orientation and origin upon flipping.
orientationRank - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
orientationRank - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
orientationRank - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
orientations - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
orientationsCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
orientationScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature: < edge score.
OrientationSet1Back - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
OrientationSet1Left - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
OrientationSet1Top - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
OrientationSet2Down - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
OrientationSet2Front - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
OrientationSet2Right - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
orientationX - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
orientationY - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
orientAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientB_inv - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: When checked, denotes that the images orientation does not correspond to AlgorithmBrainExtractor.SAT_COR
orientedImgB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
orientLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Variables for the actual GUI; not all need to be global, but just as easy.
orientMatrixA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orientMatrixB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
orients - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
orientSpecific - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
OrientStatus(int, float) - Constructor for class gov.nih.mipav.model.file.FileIO.OrientStatus: Creates an Orientation Status with a given index and location.
orientTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
ORIG_TO_ACPC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ORIG_TO_ACPC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
ORIG_TO_TLRC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ORIG_TO_TLRC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
origAC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origAC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Anterior Comissure in original space.
origACCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: ACPC Specific info.
origBrightness - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
origBrightness - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
origBrightness - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
origBrightness - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
origBrightness - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
origBrightness - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
origContrast - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
origContrast - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
origContrast - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: red, green, and blue origBrightness remains constant until applyButton is pressed, restores brightness if cancelButton is pressed.
origContrast - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: red, green, and blue origBrightness remains constant until applyButton is pressed, restores brightness if cancelButton is pressed.
origContrast - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: red, green, and blue origBrightness remains constant until applyButton is pressed, restores brightness if cancelButton is pressed.
origContrast - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
origDeformedSubject - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
origDelta - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origDicom - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
origDim - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Original image dimensions.
origDimCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
origExtents - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
origImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
origImageTableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
origin - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
origin - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D
origin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
origin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
origin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
origin - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileInfoBase: The origin to support image locations (ie.
origin - Variable in class gov.nih.mipav.model.file.FileInfoFits
origin - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileMetaImage: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileNIFTI: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
origin - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
origin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
origin - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
origin - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
ORIGIN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
original - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
original - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
original - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
original - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
ORIGINAL - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Original slice type - a 2D image is inserted.
original_length - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_marker_struct
ORIGINAL_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
ORIGINAL_TYPE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: DOCUMENT ME!
originalAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: stores the original image orientation axis
originalAxisTargetAtlas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: stores the original image orientation axis (used for the target image when an atlas image is present)
originalBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
originalBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
originalColumnsString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: x dim
originalCropCheckbox - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
originalDataType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
originalDataType - Variable in class gov.nih.mipav.model.file.FileInfoDicom
originalDataType - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
originalDataType - Variable in class gov.nih.mipav.model.file.FilePARREC
originalDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Original dimension sizes.
originalDimLengths - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Original dimension sizes.
originalDismissDelay - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Delay types
originalDoCrop - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
originalEnd - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
originalEndianess - Variable in class gov.nih.mipav.model.file.FileInfoBase: Used for checking for endianess changes in the ModelImage.reallocate(final int type) function.
originalEpsilon - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: The maximum filter ripple in Chebyshev I and II The passband ripple in decibels in Elliptic
originalFileName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
originalFileName - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
originalFileName - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
originalFilterConstruction - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
originalFilterOrder - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
originalImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The original data image to be reconstructed:
originalImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
originalInitialDelay - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Delay types
originalInstitution - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
originalKernelDimension - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: This are variables used by the FFT filter algorithm. - should be removed - redesigned
originalLineOffset - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
originalLineSlope - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
originalName(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Transforms the name from the usual form to the DICOM form.
originalNumberOfControlPoints - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
originalNumberOfFittingLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
originalPath - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
originalPath - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
OriginalPosteriorMargin - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
originalRowsString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: y dim
originalRs - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Decibels stopband is down in Elliptic
originalScanData - Variable in class gov.nih.mipav.model.file.FileInfoCZI
originalsearch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options
originalSeriesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
originalSeriesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
originalSrc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: original source image
originalStagePositionX - Variable in class gov.nih.mipav.model.file.FileInfoZVI
originalStagePositionY - Variable in class gov.nih.mipav.model.file.FileInfoZVI
originalStart - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: DOCUMENT ME!
OriginalSuperiorEdge - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
originalTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: DOCUMENT ME!
originalTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: DOCUMENT ME!
originalVolPowerOfTwo - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Boolean flag to indicate the original image is in Power of 2.
originalX - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
originalX - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
originalY - Variable in class gov.nih.mipav.view.ViewJComponentFunct: DOCUMENT ME!
originalY - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
originalZDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: the number of z slices in a 4D image equal to zDim before the JDialogAnimate 4D to 3D conversion
originalZDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
originalZDim - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: for 4D originalXDim and originalYDim are xDim and yDim before 4D to 3D conversion.
originatingSystem - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
originator - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Unknown use.
originator - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Unknown use.
originButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
originImg2LPS(float[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Switch origin order from image order to LPS order.
originLPS(ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Returns the image origin in LPS space.
originLPS2Img(float[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Switch origin order from LPS order to Img order.
originToStraight(ModelImage, ModelImage, Vector3f, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Given a point in the twisted volume, calculates and returns the corresponding point in the straightened image.
originX - Variable in class gov.nih.mipav.model.file.FileInfoLSM: The x-offset of the center of the image in meter relative to the optical axis.
originX - Variable in class gov.nih.mipav.model.file.FileLSM: The x-offset of the center of the image in meter relative to the optical axis.
originY - Variable in class gov.nih.mipav.model.file.FileInfoLSM: The y-offset of the center of the image in meter relative to the optical axis.
originY - Variable in class gov.nih.mipav.model.file.FileLSM: The y-offset of the center of the image in meter relative to the optical axis.
origJointST - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
origName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origNDims - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
origNPts - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Single Transfer Line size.
origNPts - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Single Transfer Line size.
origOrient - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC orientation in original image.
origOrientation - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origOrientationCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origOrigin - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origOrigin - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
origOrigin - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Original image origin.
origOriginCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
origOriginFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
origPC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Posterior Comissure in original space.
origPCCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
origPtr - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
origPtr - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
origRes - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Original image voxel resolutions.
origResCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
origResFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
origSubjectList - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
origTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
origTarget - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
origTargetList - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
origToAcpc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from orig to acpc.
origToAcpc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from orig to acpc.
origToTlrc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from orig to tlrc.
origToTlrc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from orig to tlrc.
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
origVOITableName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
origX - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: x, y, z arrays of the LUT transfer function.
origX - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: x, y, z arrays of the LUT transfer function.
origXDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origY - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: x, y, z arrays of the LUT transfer function.
origY - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: x, y, z arrays of the LUT transfer function.
origYDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
origZDim - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ort - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition: Working storage for nonsymmetric algorithm.
orth - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
orth_h - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
orth_h - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ORTH_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
orth_w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
orth_w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
orthes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
orthogonal - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
orthonormalize(Vector3f[]) - Static method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The axis vectors for the oriented bounding box are rotated in place.
OS_MAC - gov.nih.mipav.view.Preferences.OperatingSystem: Operating system enum for the MAC.
OS_UNIX - gov.nih.mipav.view.Preferences.OperatingSystem: Operating system enum for Unix - DEFAULT for unrecognized OS.
OS_WINDOWS - gov.nih.mipav.view.Preferences.OperatingSystem: Operating system enum for Windows.
OS2_BITMAP_ARRAY - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "BA" - OS/2 Bitmap array (multiple bitmaps)
OS2_BITMAP_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "BA" - OS/2 Bitmap array (multiple bitmaps)
OS2_COLOR_ICON - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "CI" - OS/2 Color icon
OS2_COLOR_ICON - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "CI" - OS/2 Color icon
OS2_COLOR_POINTER - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "CP" - OS/2 Color pointer
OS2_COLOR_POINTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "CP" - OS/2 Color pointer
OS2_ICON - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "IC" - OS/2 Icon
OS2_ICON - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "IC" - OS/2 Icon
OS2_POINTER - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "PT" - OS/2 Pointer
OS2_POINTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "PT" - OS/2 Pointer
OSBORNE1 - Variable in class gov.nih.mipav.model.algorithms.Lmmin
OSBORNE1 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
OSBORNE1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
OSBORNE1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
Osborne1Function() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne1Function
OSBORNE2 - Variable in class gov.nih.mipav.model.algorithms.Lmmin
OSBORNE2 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
OSBORNE2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
OSBORNE2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
Osborne2Function() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Osborne2Function
osBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
osLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
OSM - Static variable in class gov.nih.mipav.model.file.FileUtility: Washington University OSM dataset structure. extension: .wu
osvdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
ot - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction
ot - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
ot - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction
ot - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
oTdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
OTF(Integer, Integer, Integer, String, Boolean, Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF: Bin:BinData base64binary??
otfID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
otfRefDocumentRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: OTF Ref.
otfRefOTFID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
otfs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
other(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge
OTHER - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality other.
OTHER - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
OTHER - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality other.
OtherBlue - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OtherGreen - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
otherImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
OtherImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OtherImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
otherLabel - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
OtherLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
otherMetrics() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
otherPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
OtherRed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
OtherTransfer - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
otsu(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
OTSU - Static variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
otsuCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
otsurec(short[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA: OTSUREC Returns a set of thresholds for the input image using the multi-level otsu algorith.
otsurec_helper(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
otsuThreshold - Variable in class gov.nih.mipav.model.structures.ModelHistogram: DOCUMENT ME!
otsuThreshold(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: This algorithm is an implementation of Otsu thresholding technique based on the minimization of inter-class variance [otsu79].
OULVL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
oUnits - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
OUPTCL(int[], int[], double, int[], int, int[], int[], double[], double[][], int, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
out - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
out - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: Where to write the data
out - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Buffered Writer for saving params *
out - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Buffered Writer for saving params *
out - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter: The out.
out_bisector(delaunay.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
out_color_components - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
out_color_space - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
OUT_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary can move out.
out_ep(delaunay.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
OUT_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
out_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.img_fol_t: Output format
OUT_OF_BOUNDS - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
out_row_width - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
out_site(delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
out_triple(delaunay.Site, delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
out_vertex(delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
outarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
outarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
outBlockSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Size of the output data
outBuffersLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Length of the total output data (Not buffer size but total length of data ).
outEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outEndianess - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Endianess of the output stream.
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Parameter used in Find_Edges.
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
OUTER_EDGING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Parameter used in Find_Edges.
outerBoundaryTracing() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: From text description in 4th edition Image Processing, Analysis, and Machine Vision International Edition by Milan Sonka, Vaclav Hlavac, and Roger Boyle, Algorithm 6.7 Outer Boundary Tracing, p. 193.
outerButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
outerButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
outerCurveCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
outerDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
outerDistanceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
outerDistanceText - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
outerEdging - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
outerIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
outerIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
OuterProduct(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Forms the outer product of two vectors and store the result in this.
outfile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters: output file name
outfile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t: output file name
outFileStream - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: File output stream object.
outgoingBuffers - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Vector of ByteBuffer's of outgoing data.
outImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
outInfo - Variable in class gov.nih.mipav.model.file.FilePARREC: file info
outInfo - Variable in class gov.nih.mipav.model.file.FileSpar: file info
outiter - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
outiter - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
outiter - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
outiter - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
outlineRegion(float[][], int[], int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function computes the set of spans indicated by column crossings for rendering this contour into the z-plane.
outlineRegion(int[][], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: This function computes the set of spans indicated by column crossings for the sculpt outline drawn by the user, by doing a polygon scan conversion in gridded space.
outlineRegion(int[][], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: This function computes the set of spans indicated by column crossings for the sculpt outline drawn by the user, by doing a polygon scan conversion in gridded space.
outlineRegion(int[][], int[], int, int, int, int, Vector3f[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: This function computes the set of spans indicated by column crossings for the sculpt outline drawn by the user, by doing a polygon scan conversion in gridded space.
outlineRegion_X(float[][], int[], int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function computes the set of spans indicated by column crossings for rendering this contour into the x-plane.
outlineRegion_Y(float[][], int[], int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Helper function computes the set of spans indicated by column crossings for rendering this contour into the y-plane.
outMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
outMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
outMax - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outMax - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
outMax - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: image type max
outMax - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
outMin - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outMin - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: DOCUMENT ME!
outMin - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: image type min
outMin - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
outML - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Media locator for the output file.
outOfBoundsComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
outOfBoundsComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
outOfBoundsComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
outOfBoundsComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
outOfBoundsComboBox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
outOfBoundsIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
outOfBoundsIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
outOfBoundsIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
outOfBoundsIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
outOfBoundsIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
outOfBoundsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
outOfBoundsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
outOfBoundsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
outOfBoundsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
outOfBoundsLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
outOfCorePointCount() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
outOfCorePointCount() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
outp - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
output - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
output - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
output - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
output - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
output(double[], double, int, int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2
output(double[], int, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
output(int, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
output(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
output_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
output_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
output_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
output_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
output_2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
output_2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
output_3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
output_3 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
output_components - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
OUTPUT_DEFINED - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.ClassStateStruct
output_directory - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
output_directory_name - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
output_gamma - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
output_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
output_iMCU_row - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
OUTPUT_LUT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
output_message(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
OUTPUT_MUTEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
output_name - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
output_pass_setup8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
output_pass_setup9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
output_prefix - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
output_prefix - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
output_scan_number - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
output_scanline - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
output_target(double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
output_target(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
output_value(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
output_width - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
outputBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: Holds the choices for the outputType.
outputBox - Variable in class gov.nih.mipav.view.JPanelHistogram: enables the user to set the image output type or LUT-based image extration
outputBox - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
outputBoxB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Stores result of AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: Stores output of AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: Stores output of AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Holds the result image data.
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Receives output of AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Receives output of AlgorithmConvolver
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
outputBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
outputBufferX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
outputBufferX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
outputBufferY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
outputBufferY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
outputBufferZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
outputBufferZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
outputCommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: action command when the user presses the browse button to select the output directory:
outputCommand - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
outputDeletedAsNew() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: creating new meshes to export to the scene graph.
outputDeletedAsNew(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: creating new meshes to export to the scene graph.
outputDimsGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
outputDir - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
outputDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: output directory enables user to choose where to save files to.
outputDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
outputDir - Static variable in class gov.nih.mipav.view.ViewUserInterface: This is the outputDir path that the user entered as a command line argument when running a script *
OutputDir - gov.nih.mipav.view.Argument.StaticArgument
outputDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
outputDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
outputDirTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
outputDirTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: output directory
outputDirTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
outputField - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
outputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
outputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
outputFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
outputFileDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
outputFileDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
outputFileName - Variable in class gov.nih.mipav.model.algorithms.LSCM
outputFileName - Variable in class gov.nih.mipav.model.file.FileAvi
outputFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
outputFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
outputFilePath - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
outputFormatExtension - Variable in class gov.nih.mipav.model.file.FileJPEG2000
outputGainField - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
outputGainField - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
outputGainField - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
outputGainField - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: private JCheckBox calcGainFieldCheckbox;.
outputGainField - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: private JCheckBox calcGainFieldCheckbox;.
outputGainField - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: private JCheckBox calcGainFieldCheckbox;.
outputImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
outputImages - Variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Vector of Strings holding the registers of images used as output
outputImagesDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
outputImageType - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude
outputKinds - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
outputKinds - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
outputLayer - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
outputLog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
outputLog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: String to hold all file checks, changes and ignores.
outputMes - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
outputMes - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
outputName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: DOCUMENT ME!
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: output to a new image or overwite the current image
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: output to a new image or overwite the current image
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: DOCUMENT ME!
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: output to a new image or overwite the current image
outputOptionsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel holding statistics output options.
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Contains radio buttons used to indicate whether the whole image/just VOI regions should be processed, and whether a new image should be produced.
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
outputPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
OutputPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
outputParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
outputParametersTransparency - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
outputPath - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Output path to build new tree.
outputPointData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
outputPrefix - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
outputTextArea - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: TextArea of main dialog for text output
outputTextArea - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: output text area
outputTextArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: TextArea of main dialogfor text output
outputTract(Vector<Integer>, int, int, int, FileOutputStream) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Writes the fiber bundle tract to disk.
outputType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Type of output (same type, binary, or unsigned byte).
outputType - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
outputType - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: Same data-type, binary, or unsigned byte mask.
outputType - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
outputType - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask: Same data-type, binary, or unsigned byte mask.
outputTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
outputVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: DOCUMENT ME!
outputVal - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
outputVOIType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
outputVOIType - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
outResolutions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: DOCUMENT ME!
OUTSIDE - gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType: Pixels outside the range of boundA to boundB (inclusive) will be excluded from a calculation.
outsidePreReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
outsidePreReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
outsidePreReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
outsidePreReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
outsideReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
outsideReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
outsideReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
outsideReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
outsideValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
outStart - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outStream - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
outStream - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
outStream - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Output stream object acquired from the socket.
outTempMax - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outTempMax - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
outTempMin - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
outTempMin - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
outTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
outuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
outuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
OV - gov.nih.mipav.model.file.FileDicomTagInfo.VR
OVAL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
overall_mssim - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
overall_prediction_error - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
overflowTest - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
overflowTest - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
Overlap(int, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Overlap2(int, int[], float, int, int[], float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
overlay - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
overlay - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
OVERLAY - Static variable in class gov.nih.mipav.model.file.FileSVS
OVERLAY - Static variable in class gov.nih.mipav.model.file.FileTiff
overlayButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
overlayNames - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
overlayOn - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Flag to indicate if DICOM overlay should be displayed.
OVERLAYS - Static variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
overlayText - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: Overlay text to show on the image.
overlayValues - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
OVERWRITE - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
OVERWRITE - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: File handler output mode - overwriteBox.
overwriteBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Check box item indicating if we're to always overwriteBox the statistics file.
OW - gov.nih.mipav.model.file.FileDicomTagInfo.VR
own_data - Variable in class gov.nih.mipav.model.algorithms.CVODES.NVector
ownDataset - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Data weights.
owner - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
ownerDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
Ownership() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.Ownership
ownership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicNumericDiffCostFunction
ownership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
ownership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffCostFunction
ownership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
ownership_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction
ownership_f_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
ownership_g_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ComposedLoss
owningCanvasID - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
ownsData - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
oX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: Stores output of AlgorithmConvolver
oXdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
oXdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oXres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
oXres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oXres - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
oXX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
oXY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
oY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
oYdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
oYdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oYres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
oYres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oYres - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
oYY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
oZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
oZdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
oZdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oZres - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
oZres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
oZres - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!

P

p - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
p - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData
p - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.uni_elt
p - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
p - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
p - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec1_th
p - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec2_th
p - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd: DOCUMENT ME!
p - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
p - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
p - Variable in class gov.nih.mipav.model.algorithms.NelderMead.simplex_t
p - Variable in class gov.nih.mipav.model.algorithms.NL2sol
p - Variable in class gov.nih.mipav.model.algorithms.ODE
p - Variable in class gov.nih.mipav.model.algorithms.ODEEP
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Edge
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
p - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
p() - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
p(double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.HornSchunk
P - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
P - Static variable in class gov.nih.mipav.model.algorithms.Cephes
P - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
P - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
P - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
P - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
P - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable
P - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable
P - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
P() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.P
P() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
P(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
P(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
p_bootstrap(double[], double[], double[], int, String) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
p_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
p_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
p_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
p_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D
p_W - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
p0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
p0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
P0 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
P0(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
P0VAL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
p1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
p1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
p1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
p1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
p1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Black region exponent, 0 <= p1 <= 1.0
p1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Black region exponent, 0 <= p1 <= 1.0
P1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
P1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
P1_DTOUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_ETA - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_NEQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_NOUT - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_T0 - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_T1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
P1_TOL_FACTOR - Variable in class gov.nih.mipav.model.algorithms.CVODES
p1evl(double, double[], int) - Method in class gov.nih.mipav.model.algorithms.Cephes
P1EVL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
p1sqrtem5 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
p1sqrtem5 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
p2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter.indexintintItem
p2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
p2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
p2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: White region exponent, 0 <= p2 <= 1.0
p2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: White region exponent, 0 <= p2 <= 1.0
P2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
P2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
p3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
packBit - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
packBit - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
packBit - Variable in class gov.nih.mipav.model.file.FileSVS: Pack Bit: true if the read data file has pack bit compression.
packBit - Variable in class gov.nih.mipav.model.file.FileTiff: Pack Bit: true if the read data file has pack bit compression.
packBitCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
packBitEnable - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
PackBitsRect - Static variable in class gov.nih.mipav.model.file.FileLIFF
packBytes - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The pack length of one sample (in bytes, according to the output bit-depth
packet_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t: information concerning packets inside tile
packno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t
pad - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys
pad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
PAD_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Pad the image by adding blank slices to the back:
PAD_FRONT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Pad the image by adding blank slices to the front:
PAD_HALF - Static variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Pad the image by adding blank slices to the front and back:
PAD_SIZE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
pad1 - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Paddings
pad2 - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Paddings
padAndOrTruncate(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads with spaces and/or truncates string.
padButton - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Pad button is used for inserting blank images to the end of the image.
padded - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
padded_size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
paddedImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Padded image.
paddedSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: number of slices in padded image
padding - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters
padding() - Method in class gov.nih.mipav.model.file.FileMinc: Pads to the nearest 4 byte boundary.
paddingBot - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
paddingFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
paddingImageA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Padding imageA with blank images feeding.
paddingImageB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Padding imageB with blank images feeding.
paddingLeft - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
paddingNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: In autosequencing if the sequence number length is less than the padding number, zeroes are added to the front of the sequence number until the sequence number length equals the padding number.
paddingRight - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
paddingTop - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
padExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: The extents of padded image
padImage(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample
padImage(ModelImage, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Adds or removes margins to the input image.
padMode - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Padding mode, defaults to front.
padRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
padReflect(double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
padSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Algorithm that adds slices to front/back of image.
padToBack - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Select padding to the back:
padToFront - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Select padding to the front:
padToHalf - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Select padding to the front and back:
padValTxt - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
padValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: image values to use for padding the images, if necessary
padValue - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
PAGE_NAME - Static variable in class gov.nih.mipav.model.file.FileSVS
PAGE_NAME - Static variable in class gov.nih.mipav.model.file.FileTiff
PAGE_NUMBER - Static variable in class gov.nih.mipav.model.file.FileSVS
PAGE_NUMBER - Static variable in class gov.nih.mipav.model.file.FileTiff
pageName - Variable in class gov.nih.mipav.model.file.FileSVS
pageName - Variable in class gov.nih.mipav.model.file.FileTiff
pagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Number of pages in this frame will always be one.
pagePanel - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
pagePanelSizeX - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
pagePanelSizeX - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
pagePanelSizeY - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
pagePanelSizeY - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
pageScrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Scroll panel to handle the frame scolling.
pagingTBar - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
paint(Graphics) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
paint(Graphics) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
paint(Graphics) - Method in class gov.nih.mipav.view.ColorWheel: paint method
paint(Graphics) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane: Paints a yellow rectangle based on the dimensions if not complete; if complete, paints a red rectangle.
paint(Graphics) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
paint(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Override for Canvas3D method which uses the paint callback to track when it is possible to render into the canvas but makes sure that the default Toolkit's graphics state is synchronized just in case the window system has buffered graphics events.
paint(Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
paint(Graphics) - Method in class gov.nih.mipav.view.ViewSplashScreen: Paint the image into the frame.
paint(Consumer<Graphics2D>) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Uses the specified paintInstructions to draw into this image.
Paint(Renderer, PickRecord, ColorRGBA, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Painting support.
Paint(Renderer, PickRecord, ColorRGBA, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
PAINT_CAN - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the cursor is in paint can mode
PAINT_TOOLBAR - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
PAINT_VASC - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
PAINT_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in paint VOI mode
paintAbsValColorWheel() - Method in class gov.nih.mipav.view.ColorWheel: Paints the Absolute Value Color Wheel
PaintAutoSave - Class in gov.nih.mipav.view.dialogs: DOCUMENT ME!
PaintAutoSave(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.PaintAutoSave: Creates a new PaintAutoSave object.
paintBitmap - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
paintBitmap - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Buffer used to indicate if the pixel location is painted (true) or unpainted (false).
paintBitmap - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to indicate if the pixel location is painted (true) or unpainted (false).
paintBitmap - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to the BitSet map used in painting the image.
paintBitmapBU - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Backup of paint buffer for undo.
paintBitmapDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Buffer used to indicate if the pixel location is painted (true) or unpainted (false).
paintBitmapDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Buffer used to indicate if the pixel location is painted (true) or unpainted (false).
paintBitmapSwitch - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: if true do not getMask on a setActiveImage command so as to keep the mask from the old active image.
paintBox - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Box holding the list of available paint brushes.
paintBox - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: Combo box to hold all of the paint brushes.
PaintBoxRenderer() - Constructor for class gov.nih.mipav.view.ViewJFrameTriImage.PaintBoxRenderer: Creates a new ComboBoxRenderer2 object.
PaintBoxRenderer() - Constructor for class gov.nih.mipav.view.ViewToolBarBuilder.PaintBoxRenderer: Creates a new ComboBoxRenderer2 object.
paintBrush - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: BitSet used for painting (brushes on/off).
paintBrushButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
paintBrushDim - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Dimension of the paint.
paintBrushDimPrevious - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
paintBrushLocked - Variable in class gov.nih.mipav.view.ViewJFrameImage: used in conjuction with the above variable, stating that the paint brush has been changed but will change back to previous.
paintBrushLocked - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: used with the above to say the paint brush has been changed, waiting to change back.
paintBrushNames - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: List of built-in and user-defined paint brushes.
paintBrushNames - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
paintBrushPrevious - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
paintBrushSize - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Paint brush size.
paintBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: Paint buffer.
paintBuffer - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Buffer that displays the combined paintBitmap and pixBuffer buffers.
paintBuffer - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
paintBuffer - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
paintBuffer - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
paintBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Buffer that displays the combined paintBitmap and pixBuffer buffers.
paintBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Buffer that displays the combined paintBitmap and pixBuffer buffers.
paintBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
paintBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
paintCanToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Toggle buttons for voi/points
paintChildren(Graphics) - Method in class gov.nih.mipav.view.JScrollPopupMenu
paintColor - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The paint color to be used when the user paints in the image.
paintComponent(Graphics) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame.GPanel
paintComponent(Graphics) - Method in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: Draws the component.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.BarMeter: Draws the vertical bar, or all 100% of posible amplitude values.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.LineMeter: repaints the history graph.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.DrawingPanel: Wrapper to call the paintComponent.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.DrawingPanel: Wrapper to repaint the panel.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.DrawingPane: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.DrawingPanel: DOCUMENT ME!
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT.DrawingPanel: Deprecated.

Wrapper to repaint the panel.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB.DrawingPanel: Deprecated.

Wrapper to repaing the panel.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Paints the component.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM.DrawingPanel
paintComponent(Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.DrawingPanel
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentBase: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Paints the image and calls drawSelf for all VOIs.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Paints the graph.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraphAxes: Paints the graph.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Paints the component.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: Paints the component.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentLUTTable: Paints the image and border.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage: Paints the component using the previous set image width and height.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Paints the image and calls drawSelf for all VOIs.
paintComponent(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Paints the image, optionally draws the axis, the center of rotation point, the talairach grid, etc., and calls drawSelf for all VOIs.
paintComponentForPrinter(int, int, Graphics) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Paints the image and calls drawSelf for all VOIs and also resizes the image if it is too big for printer.
paintComponentForPrinter(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Paints the graph for the Printer.
paintCursorBoxComponent(Graphics, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentBase: Paints a box over the image centered about the cursor.
paintDialog - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Dialog to facilitate vasculature painting.
paintGrowDialog - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panels of the triplanar view.
PaintGrowListener - Interface in gov.nih.mipav.view: Interface to allow different types of ViewJComponents* to work with region grow dialogs.
paintGrowListeners - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
paintGrowListeners - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: List of frames that want to know about paint updates.
paintGrowMode - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The point selection mode.
paintIcon(Component, Graphics, int, int) - Method in class gov.nih.mipav.model.structures.TableSorter.Arrow: DOCUMENT ME!
paintIcon(Component, Graphics, int, int) - Method in class gov.nih.mipav.view.ColorIcon: paintIcon - paints the icon with a balck border.
paintImage - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: buffered image that is transparent to show the paintbrush cursor.
paintImageBuffer - Variable in class gov.nih.mipav.view.ViewJComponentAnimate
paintImageBuffer - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: This image indicates which images have been painted.
paintImagePrevious - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
paintMagComponent(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Paints a magnified window over the image centered about the cursor.
paintMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The actual paint bitmap.
paintMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
paintMask - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
paintMask - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
paintMirrorSymmColorWheel() - Method in class gov.nih.mipav.view.ColorWheel: Paints the Mirror Symmetry Color Wheel
paintNoSymmColorWheel() - Method in class gov.nih.mipav.view.ColorWheel: Paints the No Symmetry Color Wheel
paintRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: radio buttons
paintRotationalSymmColorWheel() - Method in class gov.nih.mipav.view.ColorWheel: Paints the Rotational Symmetry Color Wheel
paintToolBar - Variable in class gov.nih.mipav.view.ViewControlsImage: Paint toolbar.
paintToolBar - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Paint tool bar.
paintToPDF(PDDocument, PDPage, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Renders this ContourPlot.JPlotterCanvas in terms of PDF elements to the specified page of the specified PDF document.
paintToShortMask() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
paintToShortMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
paintToShortMask() - Method in class gov.nih.mipav.view.ViewJFrameImage
paintToShortMask() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
paintToShortMask() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
paintToShortMask() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
paintToUbyteMask() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
paintToUbyteMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
paintToUbyteMask() - Method in class gov.nih.mipav.view.ViewJFrameImage
paintToUbyteMask() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
paintToUbyteMask() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
paintToUbyteMask() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
paintToVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
paintWindowComponent(Graphics, int, int, int, int, float) - Method in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
paintWindowComponent(Graphics, int, int, int, int, float, Image) - Method in class gov.nih.mipav.view.ViewJComponentBase: Paints a image B in a window over the image centered about the cursor.
paintWindowComponent(Graphics, MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentRegistration: Paints the image and calls drawSelf for all VOIs.
Pair<T,U> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Pair(T1, T2) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Pair: Creates a pair
Pair(T, U) - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur.Pair
Pair(T, U) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Pair
Pair(T, U) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair
Pair(T, U) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair
pairCompute(Vector<CeresSolver.Pair<double[], double[]>>, CeresSolver.ProblemImpl) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
palm_sparse_smooth_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PALM_SPARSE_SMOOTH_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
palpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
PanasonicMakernoteDescriptor(MetadataExtractor.PanasonicMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
PanasonicMakernoteDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PanasonicMakernoteDescriptorTest
PanasonicMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory
PanasonicRawDistortionDescriptor(MetadataExtractor.PanasonicRawDistortionDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDescriptor
PanasonicRawDistortionDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory
PanasonicRawIFD0Descriptor(MetadataExtractor.PanasonicRawIFD0Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Descriptor
PanasonicRawIFD0Directory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory
PanasonicRawWbInfo2Descriptor(MetadataExtractor.PanasonicRawWbInfo2Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Descriptor
PanasonicRawWbInfo2Directory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory
PanasonicRawWbInfoDescriptor(MetadataExtractor.PanasonicRawWbInfoDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDescriptor
PanasonicRawWbInfoDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory
PANDA - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm: Processing Algorithm for Noncoded Document Acquisition
panel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView.TabbedItem: DOCUMENT ME!
panel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView.TabbedItem: DOCUMENT ME!
panel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.TabbedItem: Panel
panel - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
panel_histo - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t
PANEL_OFFSET - Static variable in class gov.nih.mipav.view.ViewJFrameGraph: Minimum distance between frame and subpanels
PANEL_PLUGIN - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: A constant for which to test in the actionPerformed.
panelA - Variable in class gov.nih.mipav.view.JFrameHistogram: histogram interface panels for imageA and imageB
panelA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static control panels.
panelA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Tabbed panel A.
panelA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Tabbed control panel A, B.
panelA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
panelA - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
panelActiveImage - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
panelActiveImage - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Panel for deciding which image is active; appears when 2 images are loaded.
panelAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Axial view panel.
panelAxisMode - Variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: DOCUMENT ME!
panelB - Variable in class gov.nih.mipav.view.JFrameHistogram: histogram interface panels for imageA and imageB
panelB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Tabbed panel B.
panelB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Tabbed control panel A, B.
panelB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
panelB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
panelCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Coronal view panel.
panelGU - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
panelHeight - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
panelHeight - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
panelHistogram - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: LUT control panel of the gray scale image.
panelImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
panelImageType - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
panelLabels - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel containing the position labels:.
panelLabels - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Panel containing the position labels:.
PanelManager - Class in gov.nih.mipav.view.components: Manages the adding of components to a panel, automatically tranlating between logical element placement and the panel's layout.
PanelManager() - Constructor for class gov.nih.mipav.view.components.PanelManager: Construct the panel manager with a new panel.
PanelManager(String) - Constructor for class gov.nih.mipav.view.components.PanelManager: Construct the panel manager with a new panel that has a titled border.
PanelManager(JPanel) - Constructor for class gov.nih.mipav.view.components.PanelManager: Construct the panel manager and attach it to a panel which has already been created.
panelOpacityA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Panels that hold the the control components (opacity maps).
panelOpacityA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Panels that hold the the control components (opacity maps).
panelOpacityB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
panelOpacityB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
panelOpacityGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
panelOpacityGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
panelOpacityGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: DOCUMENT ME!
panelOpacityGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

DOCUMENT ME!
panelOptionToolbars - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
panelParent - Variable in class gov.nih.mipav.view.JPanelHistogram: containing parent class.
panelParent - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

DOCUMENT ME!
panelPO - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
panelRayleigh - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
panelRician - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
panelRowColumn - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
panelS - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static control panels.
panelSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Sagittal view panel.
panelSInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static control panels.
panelThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
panelToolbar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Panel that holds the toolbars.
panelToolbar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Toolbar panel.
panelToolbar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel that holds the toolbars.
panelToolbar - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Panel that holds the toolbars.
panelToolbar - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Panel that holds the toolbars.
panelToolBarGBC - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Constraints on panelToolbar layout:
panelToolBarGBC - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
panelToolbars - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
panelWidth - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
panelWidth - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
panelX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panelXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panelY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panelYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panelZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panelZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Declare each clipping plane control panel.
panic() - Static method in class gov.nih.mipav.model.file.CBZip2OutputStream
Panorama() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.Panorama
PANORAMIC_XRAY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality panoramtic X ray.
PANORAMIC_XRAY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality panoramtic X ray.
panSysID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 59 - 9 bytes - Archiver Suite and Host.
paperColor - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
par - Variable in class gov.nih.mipav.model.algorithms.Lmmin
PAR_DEFAULT_ALPHA - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_ALPHA - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_ALPHA - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_EPSILON - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_GAMMA - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_GAMMA - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_INNER_ITER - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_INNER_ITER - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_LAMBDA - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_MAXITER - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_NSCALES - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_NSCALES - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_NSCALES - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_NSCALES - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_NWARPS - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_NWARPS - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_OUTER_ITER - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_OUTER_ITER - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_TAU - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_THETA - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_TOL - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_TOL - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_TOL - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_VERBOSE - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_VERBOSE - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_VERBOSE - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_VERBOSE - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PAR_DEFAULT_ZFACTOR - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
PAR_DEFAULT_ZFACTOR - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
PAR_DEFAULT_ZFACTOR - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
PAR_DEFAULT_ZFACTOR - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
par_kh - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
par_kvoi - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
PAR_MAX_ZFACTOR - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
par_rho - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
par1 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par2 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par3 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par4 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par5 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par6 - Variable in class gov.nih.mipav.model.algorithms.Cephes
par7 - Variable in class gov.nih.mipav.model.algorithms.Cephes
PARALLEL_VECTOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
PARALLEL_VECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
parallelButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Rendering parallel rotation button.
ParallelForEachExecutor(ContourPlot.ParallelForEachExecutor<T>, Spliterator<T>, Consumer<? super T>) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
ParallelForEachExecutor(Spliterator<T>, Consumer<? super T>) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor: Creates a new ParallelForEachExecutor that executes the specified Consumer (action) on the elements of the specified Spliterator.
parallelize(Stream<T>, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Syntactic sugar for conditional stream.parallel().
parallelPowell - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: The flag for parallel powell's method
parallelRotation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Parallel rotation flag.
parallelRotation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Parallel rotation flag.
parallelRotation - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Parallel rotation flag.
parallelScaleT3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Transformation matrix.
parallelScaleT3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Transformation matrix.
parallelScaleT3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Transformation matrix.
parallelVectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
param - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
param - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
param - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
param - Variable in class gov.nih.mipav.model.algorithms.NESolve
param - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: variables integer scalar containing the number of unknowns.
param - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: variables integer scalar containing the number of unknowns.
param - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
param - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
param - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
PARAM_BET_DO_SPHERE_ESTIMATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Flag indicates BET should approximate initial brain by sphere.
PARAM_BET_IMG_INFLUENCE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: BET based parameter for the depth to calculate in approximating brain maximum and minimum intensities.
PARAM_BET_STIFFNESS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Controls the stiffness of the brain approximation mesh.
PARAM_BOOLEAN - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a boolean value.
PARAM_CONTOUR_BACK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_CONTOUR_BACKWARD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_CONTOUR_FORWARD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_CONTOUR_FRONT - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Contour ordering:
PARAM_CONTOUR_SELECT_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_DATA_DICOMDIR_OPEN_DICOMDIR - Static variable in class gov.nih.mipav.view.CustomUIBuilder: DICOMDIR buttons
PARAM_DATA_DICOMDIR_OPEN_Images - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_DATA_PROVENANCE_OPEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Data provenance buttons
PARAM_DATA_PROVENANCE_SAVE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
param_decrease - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
PARAM_DOUBLE - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a double value.
PARAM_EXPORT_SELECTED_CONTOURS_AS_POLYGON - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_EXTERNAL_IMAGE - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating an externally-specified (not script produced) image placeholder variable string value.
PARAM_EXTRA_MMS_TO_PAD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Millimeters to add to brain mask.
PARAM_FACE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: The face orientation parameter.
PARAM_FACE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: The face orientation parameter.
PARAM_FILE - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a file variable string value.
PARAM_FLOAT - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a float value.
PARAM_IMAGE - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating an image placeholder variable string value.
PARAM_IMAGE_ALIGN_VOI_PROTRACTOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_ATTRIBUTES - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_CAPTURE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_FLIP_HORIZONTAL - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Image flipping buttons
PARAM_IMAGE_FLIP_VERTICAL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_GPU - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_HEADER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_INTENSITY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_LIGHTBOX - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_LINK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MAG - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Image Magnifying related buttons
PARAM_IMAGE_MAG_CHECKER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MAG_CUSTOM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MAG_ONE_TO_ONE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MAG_REGION - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MAG_WINDOW - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_MULTI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_OPEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Image toolbar Buttons
PARAM_IMAGE_PRINT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_SAVE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_SLICE_NEXT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_SLICE_PREVIOUS - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Image slider/frame related buttons
PARAM_IMAGE_SYNC - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_TRIPLANAR - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Image alternate views (triplanar/volume renderer) related buttons
PARAM_IMAGE_UNMAG - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_VOLUME_RENDERER_DTI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGE_VOLUME_RENDERER_GPU - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMAGEJ_TO_MIPAV - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_IMPORT_VOI_POLYGON - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_INT - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a integer value.
PARAM_LAUNCH_IMAGEJ - Static variable in class gov.nih.mipav.view.CustomUIBuilder: image J icons
PARAM_LIST - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a list of values of a second type.
PARAM_LONG - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a long value.
PARAM_LUT - Static variable in class gov.nih.mipav.view.CustomUIBuilder: LUT buttons
PARAM_LUT_BLUE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_BONE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_COOL_HOT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_CT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_CT_PRESETS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_EDIT_ALPHA - Static variable in class gov.nih.mipav.view.CustomUIBuilder: LUT channel edit
PARAM_LUT_EDIT_BLUE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_EDIT_GREEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_EDIT_RED - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_EDIT_RGB - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_GENERATE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_GRAY - Static variable in class gov.nih.mipav.view.CustomUIBuilder: LUT Color buttons
PARAM_LUT_GRAY_BLUE_RED - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_GREEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_HOTMETAL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_INVERT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_OPEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder: LUT Save/open buttons
PARAM_LUT_QUICK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_RED - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_RESET - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_SAVE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_SKIN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_SPECTRUM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_STRIPED - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD_INVERSE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD_INVERSE_RUN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD_MAX_ENT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD_OTSU - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_THRESHOLD_RUN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_TRANSFER - Static variable in class gov.nih.mipav.view.CustomUIBuilder: LUT transfer/thresholding
PARAM_LUT_TRANSFER_EVEN_DIST - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_LUT_TRANSFER_RESET - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_MIPAV_TO_IMAGEJ - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_PAINT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_ALL_FROM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_CSV - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_FREESURFER_BINARY_PATCH - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_IMAGEJ - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_IMAGEJ_ALL_FROM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_OPEN_VOI_LABEL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_ADD_MASK - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Paint Mask toolbar buttons
PARAM_PAINT_ADVANCED - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_AND_OP_MASK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_BORDER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_BRUSH - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Painting buttons
PARAM_PAINT_BRUSH_EDITOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Misc Paint actions
PARAM_PAINT_COLOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_DROPPER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_ERASE_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_ERASE_SLICE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_ERASER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_FILL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_MASK_INSIDE - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Paint mask ops
PARAM_PAINT_MASK_OUTSIDE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_OPACITY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_OPEN_MASK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_POWERPAINT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_PROPAGATE_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_PROPAGATE_DOWN - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Paint propagate actions
PARAM_PAINT_PROPAGATE_UP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_RGB_CHOOSER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_SAVE_MASK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_UNDO - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_PAINT_VOLUME_CALCULATOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_ALL_LABEL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_ALL_VOI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_ALL_VOI_TO - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_PAINT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_PAINT_AS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_SELECTED_CONTOURS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_SELECTED_CONTOURS_AS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_SELECTED_LABEL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_VOI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_VOI_AS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_VOI_CSV - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_VOI_INTENSITIES - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SAVE_VOI_INTENSITIES_TO - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SCRIPT_REFRESH - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Script buttons
PARAM_SCRIPT_RUN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_SHORT - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a signed short value.
PARAM_STRING - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a boolean value.
PARAM_STRINGS_TABLE - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: String values for all of the parameter value data types (the strings written out to the script).
param_t() - Constructor for class gov.nih.mipav.model.algorithms.NelderMead.param_t
PARAM_TRANSFORMATION_APPLY - Static variable in class gov.nih.mipav.view.CustomUIBuilder: image rotation/crop/algorithm fitting buttons
PARAM_TRANSFORMATION_LEAST_SQUARES - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_TRIIMAGE_BOUNDING_BOX - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_TRIIMAGE_CENTER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_TRIIMAGE_MAG - Static variable in class gov.nih.mipav.view.CustomUIBuilder: Tri-planar specific buttons
PARAM_TRIIMAGE_TRAVERSE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_TRIIMAGE_UNMAG - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_USHORT - Static variable in class gov.nih.mipav.model.scripting.parameters.Parameter: Parameter data type indicating a unsigned short value.
PARAM_VOI_3D_INTERSECTION - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_3D_RECTANGLE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_3D_UNION - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_BACK - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_BACKWARD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_BSPLINE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_CLOSE - Static variable in class gov.nih.mipav.view.CustomUIBuilder: POPUpVOI:
PARAM_VOI_COLOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_COPY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_CROP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_CUT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_DEFAULT_POINTER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_DELETE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_EDIT_CIRCLE_DIAM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_EDIT_SQUARE_LENGTH - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_ELLIPSE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_FLIPX - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_FLIPY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_FLIPZ - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_FORWARD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_FRONT - Static variable in class gov.nih.mipav.view.CustomUIBuilder: VOI ordering:
PARAM_VOI_GRAPH_AVERAGE_INTENSITY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_AVERAGE_INTENSITY_THRESHOLD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_BOUNDARY_CURVATURE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_BOUNDARY_INTENSITY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_INTENSITY_HISTOGRAM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_OPEN - Static variable in class gov.nih.mipav.view.CustomUIBuilder: VOI Graphing:
PARAM_VOI_GRAPH_PAAI - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_SHOW - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_TOTAL_INTENSITY - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GRAPH_TOTAL_INTENSITY_THRESHOLD - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_GROUP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_HAUSDORFF_DISTANCE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_LEVELSET - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_LINE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_LIVEWIRE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_LOGICAL_OPERATIONS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_NEW - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PASTE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_POINT - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_POINT_DELETE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_POLY_SLICE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_POLYGON - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_POLYLINE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PROPAGATE_3D_LEVELSET - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PROPAGATE_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PROPAGATE_DOWN - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PROPAGATE_UP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PROPERTIES - Static variable in class gov.nih.mipav.view.CustomUIBuilder: VOI Actions/Properties
PARAM_VOI_PROTRACTOR - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_PSLICE_DISTANCE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_QUICK_AND_OP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_QUICK_NOT_OP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_RECTANGLE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_REDO - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_SELECT_ALL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_SELECT_NONE - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_SHOW_CONTOUR_BOUNDING_BOX - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_SPLITTER - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_STATISTICS - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_TEXT - Static variable in class gov.nih.mipav.view.CustomUIBuilder: VOI Types
PARAM_VOI_TRIM - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_UNDO - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_VOI_UNGROUP - Static variable in class gov.nih.mipav.view.CustomUIBuilder
PARAM_WINDOW_LEVEL - Static variable in class gov.nih.mipav.view.CustomUIBuilder
param1_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
param2_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
param2Coordinates(double, double, double, double, double, double, double, double, double, Vector<Vector3f>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
param2Coordinates(double, double, double, double, double, double, double, double, double, Vector<Vector3f>) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
Param2PoseVec(double, double, double, double, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts pose parameters: scale, theta, tx, ty to a pose vector.
param3_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
param4_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
paramAverage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
Parameter - Class in gov.nih.mipav.model.scripting.parameters: This is an abstract base class for all script action parameters.
Parameter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Parameter(SolverType, double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
Parameter(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.Parameter: Creates a new Parameter object.
Parameter(String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.Parameter: Creates a new Parameter object.
parameter_block_map_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
parameter_block_sizes() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
parameter_block_sizes_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
parameter_block_to_row_index_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
parameter_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
parameter_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
parameter_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
parameter_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
parameter_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Program
parameter_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
parameter_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest
parameter_input_file_directory - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
parameter_input_file_name - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
parameter_map() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
parameter_output_file_directory - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
parameter_output_file_name - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
parameter_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
parameter_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
parameter_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
ParameterBlock(double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
ParameterBlock(double[], int, int, CeresSolver.LocalParameterization) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
ParameterBlockDefaultBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockDetectBadLocalParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockLocalSize(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
ParameterBlockPlusWithBoundsConstraints() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockPlusWithNoLocalParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlocksAreEquivalent(CeresSolver.ParameterBlock, CeresSolver.ParameterBlock, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlocksAreFinite(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
ParameterBlockSetBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationAndNormalOperation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationDiesOnNullParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationDiesOnSizeMismatch() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationDiesWhenResettingToDifferentParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationDiesWhenResettingToNull() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetLocalParameterizationWithSameExistingParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetParameterizationDiesOnZeroLocalSize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSetStateUpdatesLocalParameterizationJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterBlockSize(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
ParameterBlocksToStateVector(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
ParameterBlocksToStateVector(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
ParameterBoolean - Class in gov.nih.mipav.model.scripting.parameters: A boolean parameter used in either the recording or execution of a script action.
ParameterBoolean(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean object with no value.
ParameterBoolean(String, boolean) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean with a new value.
ParameterBoolean(String, int, boolean) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean object.
ParameterBoolean(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean object.
ParameterBoolean(String, String, boolean) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean object.
ParameterBoolean(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterBoolean: Creates a new ParameterBoolean object.
parameterChanged(Vector<String>) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Updates the FileInfo with new parameter data contained within the vector passed in [0] is the set description, [1] is the name of the parameter to be changed [2] is the description of the parameter [3] is the value type of the parameter [4] is the date for the parameter [5] is the time for the parameter.
parameterColumnNames - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: array of strings for parameter column names.
parameterConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: parameter convergence constant Used to test for convergence by the relative change in a[] being less than the parameterConvergence.
parameterConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: parameter convergence constant Used to test for convergence by the relative change in a[] being less than the parameterConvergence.
ParameterDouble - Class in gov.nih.mipav.model.scripting.parameters: A double parameter used in either the recording or execution of a script action.
ParameterDouble(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble object without any value.
ParameterDouble(String, double) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble with a new value.
ParameterDouble(String, int, double) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble object.
ParameterDouble(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble object.
ParameterDouble(String, String, double) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble object.
ParameterDouble(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterDouble: Creates a new ParameterDouble object.
ParameterException - Exception in gov.nih.mipav.model.scripting.parameters: Exception indicating an error encounted while retrieving a script parameter (i.e., it doesn't exist or is of an unexpected type).
ParameterException(String, String) - Constructor for exception gov.nih.mipav.model.scripting.parameters.ParameterException: Create a new ParameterException.
ParameterExternalImage - Class in gov.nih.mipav.model.scripting.parameters: A image placeholder variable parameter used in either the recording or execution of a script action.
ParameterExternalImage(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterExternalImage: Creates a new ParameterImage object.
ParameterExternalImage(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterExternalImage: Creates a new ParameterExternalImage object.
ParameterExternalImage(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterExternalImage: Creates a new ParameterExternalImage object.
ParameterFactory - Class in gov.nih.mipav.model.scripting.parameters: Factory methods for the creation of various types of Parameters.
ParameterFactory() - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFactory
ParameterFile - Class in gov.nih.mipav.model.scripting.parameters: A file parameter used in either the recording or execution of a script action.
ParameterFile(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFile: Creates a new ParameterFile object without any value.
ParameterFile(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFile: Creates a new ParameterFile object without any value.
ParameterFile(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFile: Creates a new ParameterFile object.
ParameterFile(String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFile: Creates a new ParameterFile with a new value.
ParameterFile(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFile: Creates a new ParameterFile object.
ParameterFloat - Class in gov.nih.mipav.model.scripting.parameters: A floating point parameter used in either the recording or execution of a script action.
ParameterFloat(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat object without any value.
ParameterFloat(String, float) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat with a new value.
ParameterFloat(String, int, float) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat object.
ParameterFloat(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat object.
ParameterFloat(String, String, float) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat object.
ParameterFloat(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterFloat: Creates a new ParameterFloat object.
ParameterIgnoringCostFunction(int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
ParameterImage - Class in gov.nih.mipav.model.scripting.parameters: A image placeholder variable parameter used in either the recording or execution of a script action.
ParameterImage(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterImage: Creates a new ParameterImage object.
ParameterImage(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterImage: Creates a new ParameterImage object.
ParameterImage(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterImage: Creates a new ParameterImage object.
ParameterImage(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterImage: Creates a new ParameterImage object.
ParameterInt - Class in gov.nih.mipav.model.scripting.parameters: A integer parameter used in either the recording or execution of a script action.
ParameterInt(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt object without any value.
ParameterInt(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt with a new value.
ParameterInt(String, int, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt object.
ParameterInt(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt object.
ParameterInt(String, String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt object.
ParameterInt(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterInt: Creates a new ParameterInt object.
parameterization_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
parameterLabel - Variable in exception gov.nih.mipav.model.scripting.parameters.ParameterException: The label of the parameter which there was an error retrieving.
ParameterList - Class in gov.nih.mipav.model.scripting.parameters: This is a special kind of script parameter, which contains other parameters.
ParameterList(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterList: Creates a new ParameterList object.
ParameterList(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterList: Creates a new ParameterList object.
ParameterList(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterList: Creates a new ParameterList object.
ParameterLong - Class in gov.nih.mipav.model.scripting.parameters: A long parameter used in either the recording or execution of a script action.
ParameterLong(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong object without any value.
ParameterLong(String, int, long) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong object.
ParameterLong(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong object.
ParameterLong(String, long) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong with a new value.
ParameterLong(String, String, long) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong object.
ParameterLong(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterLong: Creates a new ParameterLong object.
parameterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
parameterPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
parameters - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.StateUpdatingCallback
parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ParameterSensitiveCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterSensitiveCostFunction
ParameterShort - Class in gov.nih.mipav.model.scripting.parameters: A singed short parameter used in either the recording or execution of a script action.
ParameterShort(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort object without any value.
ParameterShort(String, int, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort object.
ParameterShort(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort object.
ParameterShort(String, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort with a new value.
ParameterShort(String, String, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort object.
ParameterShort(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterShort: Creates a new ParameterShort object.
parameterStr - Static variable in class gov.nih.mipav.model.file.FileImageXML: array of strings representing the tags under in the xml schema.
ParameterString - Class in gov.nih.mipav.model.scripting.parameters: A string parameter used in either the recording or execution of a script action.
ParameterString(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterString: Creates a new ParameterString object without any value.
ParameterString(String, int) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterString: Creates a new ParameterString object without any value.
ParameterString(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterString: Creates a new ParameterString object.
ParameterString(String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterString: Creates a new ParameterString with a new value.
ParameterString(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterString: Creates a new ParameterString object.
parameterTable - Variable in class gov.nih.mipav.model.file.XMLPSet: Parameter hashtable.
ParameterTable - Class in gov.nih.mipav.model.scripting.parameters: A lookup table containing Parameters keyed by a label/name.
ParameterTable() - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterTable
ParameterToleranceReached() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
ParameterUShort - Class in gov.nih.mipav.model.scripting.parameters: A unsigned short parameter used in either the recording or execution of a script action.
ParameterUShort(String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort object without any value.
ParameterUShort(String, int, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort object.
ParameterUShort(String, int, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort object.
ParameterUShort(String, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort with a new value.
ParameterUShort(String, String, short) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort object.
ParameterUShort(String, String, String) - Constructor for class gov.nih.mipav.model.scripting.parameters.ParameterUShort: Creates a new ParameterUShort object.
ParameterWeight(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
ParameterWeight(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the eigenvalue of the i-th parameter in absolute numbers or as percentage.
ParameterWeightOrg(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
ParameterWeightOrg(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Returns the eigenvalue of the i-th parameter in absolute numbers or as percentage.
paramInf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
paramInf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
paramInfoRegex - Static variable in class gov.nih.mipav.model.scripting.ParserEngine: This regular expression pattern breaks apart an action parameter string into three parts: param label, param data type, and param data.
paramList - Variable in class gov.nih.mipav.model.scripting.ParsedActionLine: A table of parameters which may/will be used when the action is performed.
paramListDelimiter - Static variable in class gov.nih.mipav.model.scripting.ParserEngine: The delimiter used to split up a String containing all of the parameters which should be parsed and passed to an action.
paramMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
paramMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
paramMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
paramMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
paramNaN - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
paramNaN - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
paramPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
params - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
params - Variable in class gov.nih.mipav.model.algorithms.NelderMead
params - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tps
params - Variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: The list of parameters selected by the user in an algorithm's dialog, or the list of parameters to use to setup the dialog GUI.
paramsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: DOCUMENT ME!
paramsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: DOCUMENT ME!
paramTable - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterTable: The parameter table.
paramTotal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
paramVary - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
paramVary - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
paramVaryCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
parchk(int[], int, int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
parDTIParams - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Parent algorithm that called this optimization.
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Parent algorithm that called this optimization.
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Parent algorithm that called this optimization.
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Parent algorithm that called this optimization.
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Parent algorithm that called this optimization.
parent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
parent - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_node_t
parent - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter: A reference to another Parameter who this parameter relies on.
parent - Variable in class gov.nih.mipav.model.structures.VOIBaseVector
parent - Variable in class gov.nih.mipav.view.dialogs.GuiBuilder
parent - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
parent - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
parent - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
parent - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Parent graph panel to update on 'OK'
parent - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Parent graph panel to update on 'OK'
parent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: JPanel view reference.
parent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: JPanel view reference.
parent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Controls for the image.
parent - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Controls for the image.
parent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
parent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
parent - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
parent - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Parent frame of this frame.
parent - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The component containing this panel.
parent - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
parentBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
parentComponent - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
parentComponent - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
parentDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: The parent dialog which receives text from this dicom tag editor
parentFileInfo - Variable in class gov.nih.mipav.model.file.FileDicomTagTable: The dicom file info that this tag table belongs to.
parentFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Parent frame of this dialog, usually of type ViewJFrameImage.
parentFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
parentFrame - Variable in class gov.nih.mipav.view.JFrameHistogram: Parent frame of this dialog, usually of type ViewJFrameImage.
parentFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
parentFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Keep a reference to the ViewJFrameVolumeView.
parentFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Volume view frame work reference.
parentFrame - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
parentFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Parent dialog, when this panel is created as a stand-alone dialog: *
parentFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
parentFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization: Parent dialog, when this panel is created as a stand-alone dialog: *
parentFrame - Variable in class gov.nih.mipav.view.ViewDirectoryChooser: DOCUMENT ME!
parentFrame - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
parentFrame - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Parent frame
parentFrame - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Reference to the parent window.
parentFrame - Variable in class gov.nih.mipav.view.VolumePositionFrame: Reference to the parentFrame, to notify when this window closes:.
parentListener - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase
parentPanel - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The container of this histogram component.
parentPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogVolumeAnnotation
parents - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Number of labels
parentScene - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: The parent fly thru render reference.
parentScene - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Parent frame.
parentScene - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Parent frame references.
parentScene - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Parent scene.
parentScene - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The parent object that holds necessary the structures to which the surfaces will be added and modified.
parentScene - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Parent scene.
parentScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Parent frame references.
parentScene - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Parent frame references.
parentTags - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
parentValueString - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter: The value to check the parent Parameter against before enabling this Parameter, in string format.
parfocalCorrection - Variable in class gov.nih.mipav.model.file.FileInfoZVI
PARFUN(int, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PARGEN() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PARMETIS - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t
parNExamName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNfoldover - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNoffCentre - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNorient - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNPatientPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNProtocolName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
parNsliceAng - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
PARNT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
parNversion - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
PARREC - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: "par","parv2","rec","frec".
PARREC_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: "par","parv2","rec","frec".
PARRECMatrix - Variable in class gov.nih.mipav.model.file.FileInfoSPAR
parse() - Method in class gov.nih.mipav.view.graphVisualization.MipavSAXReader: Parses the XML file with the Graph description.
parse(byte[]) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
parse(File) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this method parses the study dir sort into lists using series number that is available in dicom tag. then based on the filename, get vol number (for example mipav_dicom_dti_series11_volume10005.dcm), and sort within lists using vol number and instance number that comes from dicom tag.
parse(File) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Parses study directory
parse(File) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Parses the files in the directory.
parse(String) - Method in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
parse(String) - Method in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
parse(String) - Static method in class gov.nih.mipav.util.DoubleDouble: Converts a string representation of a real number into a DoubleDouble value.
parse(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
parse_command_line(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
parse_command_line(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
parse_command_line(String[], boolean) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
parseArguments(String[], int) - Method in interface gov.nih.mipav.view.CommandLineParser: The parseArguments method parses command line arguments.
parseArguments(String[], int) - Method in class gov.nih.mipav.view.ViewUserInterface: Required by the CommandLineParser interface.
parseBuffer(short[], ModelImage) - Method in class gov.nih.mipav.model.file.FileMap: parseImage 03 00 or 00 03 is the delimiter.
parseColor(String) - Method in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
ParsedActionLine - Class in gov.nih.mipav.model.scripting: This object holds data parsed from a single line in a script, including the action to be taken and the parameters to pass to that action.
ParsedActionLine(String, ParameterTable) - Constructor for class gov.nih.mipav.model.scripting.ParsedActionLine: Creates a new ParsedActionLine object.
parsedFileName - Variable in exception gov.nih.mipav.model.scripting.ParserException: The file name of the script where this error occurred ('-' if no corresponding file on disk).
parseDICOMintoBuffer(DICOM_Object, DICOM_Comms, DICOM_FileIO) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
parseDICOMIntoRawVR(DICOM_Object, DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Converts a DICOMObject into an outgoing DICOM data stream.
parseDims(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF: Determines the dimensions, dirCosines, isCentered, step, and alignment
parseDouble(String) - Static method in class gov.nih.mipav.model.file.FileSpar
parseFile(int) - Static method in class gov.nih.mipav.model.file.DicomDictionary: Method called once when the user opens MIPAV.
parseFile(int) - Static method in class gov.nih.mipav.model.file.PrivateDicomDictionary: Method called once when the user opens MIPAV.
parseFloatParameters(String, int) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Parsing utility.
parseHDFHeader(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF: recursively parses the HDF tree into the given file info
parseImage(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF: Parses the image node and reads in the image data (and image min and max per slice)
parseImageDimOrder(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF: parses the dim order
parseInfo(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF: Parses the info node (right now only grabs the modality)
parseInt(String) - Static method in class gov.nih.mipav.model.file.FileSpar
parseIntParameters(String, int) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Parsing Parameters Utility
parseLine(String) - Method in class gov.nih.mipav.model.scripting.ParserEngine: Parses a line from a script.
parseLine(String, int) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
parseList(String, int) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Extracts individual parameter list elements from a comma delimited String.
parseManifestInfo() - Method in class gov.nih.mipav.plugins.ManifestFile
parseName(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Transforms the name from the DICOM form to a more usual form.
parseNextLine() - Method in class gov.nih.mipav.model.scripting.ParserEngine: Parse and return the next line in the script.
parseParameter(String, String, String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterFactory: Creates a new parameter with a given label and value.
parseParameterInfo(String) - Method in class gov.nih.mipav.model.scripting.ParserEngine: Parse out the individual parameter information from a string.
parseParameters(String) - Method in class gov.nih.mipav.model.scripting.ParserEngine: Splits a list of parameters into individual parameter information strings, parses the individual parameter strings, and puts the parameters into a look up table.
Parser - Class in gov.nih.mipav.model.scripting: This is the main class used to parse and run scripts.
Parser() - Constructor for class gov.nih.mipav.model.scripting.Parser
Parser(String) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Parser
parseRanges() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
parseRangeString(int, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Extract the slices that should be extracted from a range string.
parseRawVRIntoDICOM(DICOM_Comms, DICOM_Object) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Convert an incoming DICOM network data stream into a DICOMObject.
ParserEngine - Class in gov.nih.mipav.model.scripting: Performs the heavy-lifting of parsing out individual lines from a script.
ParserEngine(String, boolean) - Constructor for class gov.nih.mipav.model.scripting.ParserEngine: Creates a new ParserEngine object.
ParserException - Exception in gov.nih.mipav.model.scripting: Provides information about an error encountered while parsing a script.
ParserException(String) - Constructor for exception gov.nih.mipav.model.scripting.ParserException: Creates a new ParserException object.
ParserException(String, int, String) - Constructor for exception gov.nih.mipav.model.scripting.ParserException: Creates a new ParserException object.
parseServerInfo(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Parses the server info string and returns a tokenized array of strings that where deliniated by ";" (See MIPAV preference file).
parseSQTags(ViewTableModel, String, FileDicomSQ, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
parseStaticArguments(String[], int) - Static method in class gov.nih.mipav.view.ViewUserInterface: Required by the CommandLineParser interface.
parseString(String, int) - Static method in class gov.nih.mipav.model.file.FileHistoLUT: Parses a string and returns an array of floats.
parseString(String, int) - Method in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
parseTagValue(String) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Parse the string for Objects seperated by "\".
parseTreeToXML(TreeNode) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: DOCUMENT ME!
parseVRMLMesh(RandomAccessFile) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Parses the VRML to see how many surfaces there are.
parseVRMLMesh(RandomAccessFile) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Parses the VRML to see how many surfaces there are.
ParSymbFact - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
PARTICLE_ANALYSIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
PARTICLE_ANALYSIS_NEW - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
PARTICLE_ANALYSIS_NEW - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
PARTICLE_ANALYSIS_NEW - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
PARTICLE_ANALYSIS_NEW - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
particleAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
particleAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
particleAlgo2D - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
particleAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
particleAnalysis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
particleAnalysis() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Take a mask like image and performs an analysis.
particleAnalysisNew(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: particleAnalysis = Ult erode & (bg dist map AND orig image) => watershed(ultErodePts, ANDED Bg Dist) => IDobjects.
particleSystem() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
particleSystem(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Particle system analysis.
PartitionedMatrixView(int, int, int, CeresSolver.BlockSparseMatrix, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
PartitionedMatrixViewTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestBlockDiagonalEtE() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestBlockDiagonalEtE() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PartitionedMatrixViewTestBlockDiagonalFtF() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestBlockDiagonalFtF() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PartitionedMatrixViewTestDimensionsTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestDimensionsTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PartitionedMatrixViewTestLeftMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestLeftMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PartitionedMatrixViewTestRightMultiplyE() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestRightMultiplyE() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PartitionedMatrixViewTestRightMultiplyF() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PartitionedMatrixViewTestRightMultiplyF() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Partitionner(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Partitionner_dec(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Partitionner_inc(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
PartitionStochastique(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
PartitionStochastique_dec(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
PartitionStochastique_inc(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
parts - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
PARZEN_WINDOW_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
PARZEN_WINDOW_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
parzenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
pass_counter - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
pass_counter - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_progress_mgr
pass_limit - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
pass_limit - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_progress_mgr
pass_number - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
PASS1_BITS - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
pass2_fs_dither(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
pass2_fs_dither(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
PASS2_FS_DITHER - Static variable in class gov.nih.mipav.model.file.libjpeg
pass2_no_dither(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
pass2_no_dither(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
PASS2_NO_DITHER - Static variable in class gov.nih.mipav.model.file.libjpeg
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest
passed - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
passedListeners - Variable in class gov.nih.mipav.view.dialogs.GuiBuilder
passedReg - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver
passFreeRangeArrays(boolean[], float[], float[], float[], float[]) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Passes arrays needed in free range mode.
passFreeRangeArrays(boolean[], float[], float[], float[], float[]) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Passes arrays needed in free range mode.
paste() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
pasteAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
pasteAllVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
pasteFromViewUserInterface() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
pasteFunct() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Adds the previously copied copied function to the graph.
pastelnormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
pasteVOI(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
pasteVOI(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
pasteVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
pasteVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Paste the input VOIBase.
patch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
patch - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.tliop
patch_cmp(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
patch_sort(LocalIntensityOrderPattern.VlLiopDesc, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
patch_sort_recursive(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
patch_swap(LocalIntensityOrderPattern.VlLiopDesc, int, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
PatchBatchExtractor(libdt.Mat[], libdt.PatchOptions, libdt.Range, libdt.Range, libdt.Range) - Constructor for class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < mask for all patches.
patchBufferSize - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
patches - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < all z-locations on step grid.
patches - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < video buffer w/o mean [vrows,vcols,patopt.win.z] type=OPT_MAT_TYPE.
patchesall - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < vector of all patches, corresponding to loc.
PatchExtractor(libdt.PatchOptions, int, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < center frames of the video buffer (reference to vbuf).
patchIntensities - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
patchNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
patchNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
PatchOptions(int, int, int, int, libdt.norm_type, double, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.PatchOptions: < frames to skip in checking variance.
PatchOptions(libdt.PatchOptions) - Constructor for class gov.nih.mipav.model.algorithms.libdt.PatchOptions
patchPermutation - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
patchPixels - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
patchSideLength - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc: < LIOP descriptor size.
patchSize - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc
patchSize - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
patchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
path - Variable in class gov.nih.mipav.model.algorithms.NESolve
path - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
path - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink: Path to surface.
path - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink: Path to VOI.
path - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: The path to the provenance file
path - Variable in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
Path() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Returns the path of all shapes.
pathCompress(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
pathFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: Path File name
PathLen(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the length of a path.
pathPlanningRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Radio check button the path planning.
pathRecorded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: The flag to indicate whether the searching path need to be recorded.
pathRecorded - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: The flag to indicate whether the searching path need to be recorded.
paths - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Store the paths for every thread.
paths - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Store the paths for every thread.
paths - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Used to store all paths for levelEigth, levelFour, levelTwo and levelOne.
paths - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Used to store all paths for levelEigth, levelFour, levelTwo and levelOne.
paths(int, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Generates the possible paths of the level set and pushes them onto a stack.
paths(int, int, int, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Generates the possible paths of the level set and pushes them onto a stack.
patian - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 124 Patient Age notation.
patient_id - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Patient's ID.
patient_id - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Patient's ID.
patient_id - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
PATIENT_LEVEL - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
patientAge - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientAge - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patientAge - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 122.
PatientAge - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
PatientAgeUnits - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
patientBirthDate - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientBirthTime - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientComments - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientCoordinatesToFile(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Converts the local patient point into file coordinates.
patientDOB - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientEthnicGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
patientID - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patientID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 84 - 13 bytes.
patientID - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientID - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
PatientID - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
patientName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patientName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 97 - 25 bytes.
patientName - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientName - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: Info data structure format.
patientName - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
patientName - Variable in class gov.nih.mipav.model.file.FilePARREC
patientName - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
PatientName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
patientOrientation - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientOrientation - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientOrientationString - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
patientOrientationString - Variable in class gov.nih.mipav.model.file.FileNIFTI
patientOrientBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
patientOrientLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
patientOtherIDs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientOtherNames - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
patientPosBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
patientPosition - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
patientPosition - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: par/rec patientPosition
patientPosition - Variable in class gov.nih.mipav.model.file.FilePARREC: patient position
patientPosLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
patientRotation - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientSex - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientSex - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patientSex - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 126.
patientSex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
patientSex - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
PatientSlice - Class in gov.nih.mipav.view: PatientSlice provides oriented or non-oriented interface to the ModelImage data for rendering, with LUT changes.
PatientSlice(ModelImage, ModelLUT, ModelImage, ModelLUT, int) - Constructor for class gov.nih.mipav.view.PatientSlice: Constructs a PatientSlice with the given ModelImages, LUTs, and orientation.
patientSliceLabel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Labels for the current position in PatientSlice coordinates:.
patientSliceLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current position in PatientSlice coordinates.
patientSliceLabelVals - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
patientSliceLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Displayed values for the current position in PatientSlice coordinates.
patientStatus - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientStatus - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patientToFile(Vector3d, Vector3d, ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: PatientToFile transform.
patientToFile(Vector3d, Vector3d, ModelStorageBase, int, boolean) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: PatientToFile transform.
patientToFile(Vector3f, Vector3f, ModelStorageBase, boolean, int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: PatientToFile transform.
patientToFile(Vector3f, Vector3f, ModelStorageBase, int) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: PatientToFile transform.
patientToFile(Vector3f, Vector3f, ModelStorageBase, int, boolean) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: PatientToFile transform.
PatientToLocal(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Convert the position in PatientCoordinates into Local rendering coordinates:
PatientToLocal(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
PatientToLocal(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
patientToScreen(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
patientToScreen(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
patientToScreen(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
patientToScreenVOI(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
patientToScreenVOI(Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener: Converts local patient coordinate view (Axial, Coronal, Sagittal) of the image into the screen coordinates.
patientToScreenVOI(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
patientWeight - Variable in class gov.nih.mipav.model.file.FileGESigna4X
patientWeight - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
patopt - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
patopt - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: fill type for generating images from patch labels.
pattern - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
pattern - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
pattern - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
pattern - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta: < Is the file active?
pattern - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
pattern - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
pattern - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
pattern2lines - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
PatternDetection - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
PatternDetection() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
PatternDetectionTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
PatternDetectionTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetectionTest
patternGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
patternGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
patternGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
patternPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
patternScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
patternScale - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
patWeight - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 128 Patient Weight.
pause - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
pause - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
pause() - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
pause() - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Pause function for testing and debugging purpose.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: debug function
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Pauses the display until the user hits enter.
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
pause() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
PAUSE_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Recorder/Player is paused.
PAUSE_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Recorder/Player is paused.
PAUSE_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Recorder/Player is paused.
pauseAnimator(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
pauseBetweenFrameGroups - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
pauseBetweenFrameGroupsIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
pauseBetweenImages - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
pauseBetweenImagesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
pauseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: DOCUMENT ME!
pauseButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Pause button.
pauseButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Pause button.
pauseButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Pause button.
pauseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
pauseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
pauseButton - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
pauseButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Button for pausing updating of currently registered images
pauseButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: DOCUMENT ME!
paused - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
paused - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Whether currently registered images list is updating
PAUSED - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Status indicating that the script recorder is currently paused.
PAUSED - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder: Status indicating that the script recorder is currently paused.
pauseDialog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
pauseInterval - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pauseInterval - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pauseInterval - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 264 Pause interval (slices).
pauseRecording() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Pauses the recording of the script we are currently recording.
pauseRecording() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Pauses the recording of the script we are currently recording.
pauseTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pauseTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pauseTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 266.
PAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
pB - Variable in class gov.nih.mipav.view.ColorWheel: blue saturation
pB - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: blue saturation *
pB - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: blue saturation *
pB - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: blue saturation *
pb_bounds(String) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
pb2MM(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pb2MM2(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: DOCUMENT ME!
pBar - Variable in class gov.nih.mipav.view.JPanelProgressBar: Actual bar which fills with color as the percentage of completion increases.
pBar - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Actual bar which fills with color as the percentage of completion increases.
pBar - Variable in class gov.nih.mipav.view.ViewJProgressBar: Actual bar which fills with color as the percentage of completion increases.
pBar - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: The progress bar
pBarVisible - Variable in class gov.nih.mipav.model.file.FileBase: Flag indicating if the progress bar should be shown.
pBarVisible - Variable in class gov.nih.mipav.model.file.FileDicomBase: Flag indicating if the progress bar should be shown.
pBarVisible - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Flag indicating if a whether of not the progress bar is visible.
pbBG(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbBGTG(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbCanny(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbCG(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbCGTG(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbGM(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pbGM2(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
pBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
pbTG(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
pC - Variable in class gov.nih.mipav.view.ColorWheel: color range
pC - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: color range *
pC - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: color range *
pC - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: color range *
Pc - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Marginal.
PCA(double[][], double[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
PCAData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
pcDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
pcerr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
pcie - Variable in class gov.nih.mipav.model.file.FileInfoAfni: The posterior commisure inferior edge. pcie is the coordinated transformed inferiorEdge
pComponent() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
pComponentAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
pctLabel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: The percentage displayed next to the progress bar
PCVelocityEncoding - Variable in class gov.nih.mipav.model.file.FileGESigna4X
PCVelocityEncoding - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
Pcx - gov.nih.mipav.model.file.MetadataExtractor.FileType
Pcx - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Number of entries to update
PCX - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .pcx.
PData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.PData
pDataTF - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Data transfer object.
Pdf - gov.nih.mipav.model.file.MetadataExtractor.FileType
pDloc_i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
pDloc_j - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
pdtr(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
PDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
pdtrc(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
PDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
pdtri(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
PDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
pdu - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Move: PDU service object.
pdu - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: The PDU service object.
pdu - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Protocol Data Units (PDU) object.
pdu - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: PDU service object.
pdu - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery.MoveRequestInfo: DOCUMENT ME!
PDUTYPE_AAbortRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AAssociateAC - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AAssociateRJ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AAssociateRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AbstractSyntax - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_ApplicationContext - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AReleaseRQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AReleaseRSP - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_AsyncOpWindowSubItem - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_ImplementationClass - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_ImplementationVersion - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_MaximumSubLength - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_PDataTF - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_PresentationContext - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_PresentationContextAccept - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_SCPSCURoleSelect - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_TransferSyntax - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_UNKNOWN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDUTYPE_UserInformation - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
PDVLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Presentation Data Value length.
PDVMsgHeader - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Presentation Data Value message header. 01H Accociate request. 02H Associate ack. 03H Associate reject. 04H PData PDU 05H Release request 06H Release response 07H Abort 10H Application context item 20H Presetation context item 21H Pr 30H Abstract Syntax sub-item 40H Trnasfer Syntax sub-item 50H User information item
PDVPresContID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Presentation Data Value presentation context ID.
pdx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_resolution_t
pdy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_resolution_t
PEAK_SIGNAL_TO_NOISE_RATIO - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
peak_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT
peak_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt: < size of the keys buffer.
peak_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC
peak_thresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
peak_thresh_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
peakSAR - Variable in class gov.nih.mipav.model.file.FileGESigna4X
peakSAR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
peakScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2
peakScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3
peakScore - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature: < feature frame.
peakSignalToNoiseRatio - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
peakThreshold - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < feature extraction method.
pEdge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
peekedByte - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Storage for the first byte (i.e. the PDU type )
peekFirstByte() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Typically used to determine the PDUTYPE (i.e.
peekForEndOfSequence() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: DOCUMENT ME!
PELLPE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
PELLPK - Static variable in class gov.nih.mipav.model.algorithms.Cephes
PENALTY_FUNCTION_I - Variable in class gov.nih.mipav.model.algorithms.LsqFit
PENALTY_FUNCTION_I - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
PENALTY_FUNCTION_II - Variable in class gov.nih.mipav.model.algorithms.LsqFit
PENALTY_FUNCTION_II - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
penColor - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
PentaxMakernoteDescriptor(MetadataExtractor.PentaxMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDescriptor
PentaxMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory
PER_MINIMIZER_ITERATION - gov.nih.mipav.model.algorithms.CeresSolver.LoggingType
per_scan_setup(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
percent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
percent - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
percent - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
percent_done - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
PERCENT_SIGN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter
percentage - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
percentage - Variable in class gov.nih.mipav.view.ViewJProgressBar: Percentage label, puts a number next to the bar with the actual percent completed.
percentButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
percentLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
percentPhaseFieldOfView - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
percentSampling - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
percentText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
percentUsed - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
perform() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Begins the excution of the 3D convolver.
perform() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: This is the method that calculates the FFT Perform a data centering operation after the forward FFT Perform a data centering operation before the inverse FFT Note that a frequency filter operation performs a forward FFT.
perform() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: This is the method that calculates the FFT Perform a data centering operation after the forward FFT Perform a data centering operation before the inverse FFT Note that a frequency filter operation performs a forward FFT.
performApproxModeling - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
performBoundsChecking - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: flag for performing bounds checking...normally should be set to true unless negative numbers are desired
performBoundsChecking - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: flag for performing bounds checking...normally should be set to true unless negative numbers are desired
performBulkAdding() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: perform bulk adidng
performBulkAveraging(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: perform bulk averaging
performBulkMax() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: perform bulk adidng
performBulkMin() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: perform bulk adidng
performConventionalModeling - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
performConventionalWith0Phase - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
performConventionalWith180Phase - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
performDelete() - Method in class gov.nih.mipav.view.JPanelListController: Programmatically performs a 'delete' button click, based on however the implemented class performs it.
performDelete() - Method in class gov.nih.mipav.view.JPanelTreeController: Programmatically performs a 'delete' button click, based on however the implemented class performs it.
performedProcedureStepStartTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
performEPICheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
performFullModeling - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
performHeapMaxCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
performMT() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
performMT() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: The multi-threading version of FFT algorithm.
performMT() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: The multi-threading version of FFT algorithm.
performPaint(MouseEvent) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
performPaint(MouseEvent, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: This method will set or clear the paint bitmap as the user paints on-screen.
performRegistration - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: boolean for performing registration
performRegistrationCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: checkbox for performing registration
performRegistrationDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: regsitration of DICOM DWI dataset
performRegistrationPARREC() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: regsitration of PAR REC DWI dataset
performSendToListA() - Method in class gov.nih.mipav.view.JPanelListController: Programmatically performs a 'Send to list a' button click, based on however the implemented class performs it.
performSendToListB() - Method in class gov.nih.mipav.view.JPanelListController: Programmatically performs a 'Send to list b' button click, based on however the implemented class performs it.
performSendToTreeA() - Method in class gov.nih.mipav.view.JPanelTreeController: Programmatically performs a 'Send to tree a' button click, based on however the implemented class performs it.
performSendToTreeB() - Method in class gov.nih.mipav.view.JPanelTreeController: Programmatically performs a 'Send to tree b' button click, based on however the implemented class performs it.
performStraightTreT1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
performStraightTreT1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
performTreT1HIFI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
performTreT1HIFI - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
performTreT1withPreCalculatedB1Map - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
performTreT1withPreCalculatedB1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
perImageCost(int, double, double, double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perImageCost
perimeter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
perimeter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
perimeterDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statics to calculate.
period - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap
Periodic - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
Periodic - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
periodic_bc(int, int, boolean[]) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Periodic boundary condition test
perm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
perm - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
permConf_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
permGx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
permGy_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
perMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
perMinute - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: If perMinute == false, K_trans and k_ep are per second If perMinute == true, K_trans and k_ep are per minute
permitExclusion - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: Whether pixels will be excluded from a calculation based on intensity values
permNmxConf_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
permNmxRank_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
permRank_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
permutation - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog
permute_on - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
permute_on - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
permuteAndPredictOobSamples(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
permuted_sampleIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data
permuteSampleIDs(Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
perp(Vector2f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f: Set this vector to the 'perp' of the specified vector.
perShapeCost(int, double, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
perSolveOptions - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver
perSolveOptions - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy
Person(String, String, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.Person: Creates a new Person object.
Perspective - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
pert - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams
perVertexColor - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Per vertex color array, which store the color data saved in .sur file.
PETDataType - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
PETStudyGeneral - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
PETStudyImageData - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
pFace - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
pfactor - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
pFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: DOCUMENT ME!
pfSwapped - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pfSwapped - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pG - Variable in class gov.nih.mipav.view.ColorWheel: green adj
pG - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: green saturation *
pG - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: green saturation *
pG - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: green adj *
PGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
pgb1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pgb1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
pgb2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pgb2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
pgd_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PGD_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PGM - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PGM - Static variable in class gov.nih.mipav.model.file.FileUtility: Portable Gray Map extension .pgm
PGX_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
ph - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_resolution_t
ph - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
ph0q - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
ph180q - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
pHalfEdge - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
phase - Variable in class gov.nih.mipav.model.algorithms.ODE
phase - Variable in class gov.nih.mipav.model.algorithms.ODEEP
phase(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Calculates phase from real and imaginary parts.
phase(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Calculates phase from real and imaginary parts.
phase(float, float) - Static method in class gov.nih.mipav.util.MipavMath: Calculates phase from real and imaginary parts.
phase_dim - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Bits 2 and 3 of the dim_info character contain the phase_dim information. 0 for "No phase encoding direction is present", 1 for "Phase encoding in the x direction", 2 for "Phase encoding in the y direction", and 3 for "Phase encoding in the z direction".
phase_dim - Variable in class gov.nih.mipav.model.file.FileNIFTI: Bits 2 and 3 of the dim_info character contain the phase_dim information. 0 for "No phase encoding direction is present", 1 for "Phase encoding in the x direction", 2 for "Phase encoding in the y direction", and 3 for "Phase encoding in the z direction".
phase1 - Variable in class gov.nih.mipav.model.algorithms.ODE
phase1 - Variable in class gov.nih.mipav.model.algorithms.ODEEP
phaseBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
phaseCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
phaseContrastFlowAxis - Variable in class gov.nih.mipav.model.file.FileGESigna4X
phaseContrastFlowAxis - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
PhaseCorrelation(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
phaseData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
phaseData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
phaseEncodingString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: phase encoding...hard coded to vertical
phaseEncodingTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
phaseImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
phaseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
phaseMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
PhasePreservingDenoising - Class in gov.nih.mipav.model.algorithms.filters
PhasePreservingDenoising() - Constructor for class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
PhasePreservingDenoising(ModelImage, int, int, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
PhasePreservingDenoising(ModelImage, ModelImage, int, int, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising
phaseRadios - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
PhaseType(int) - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
phaseTypeInt - Variable in enum gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
phaseTypeInt() - Method in enum gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
phi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
phi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
phi - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
phi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: double scalar containging the value of the objective function = (0.5 * chisquare) at the termination point a.
phi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: double scalar containging the value of the objective function = (0.5 * chisquare) at the termination point a.
phi - Variable in class gov.nih.mipav.model.algorithms.ODE
phi - Variable in class gov.nih.mipav.model.algorithms.ODEEP
phi - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
phi - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
PHI02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
PHI12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
phiBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
phiBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
phiBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
phiConstant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
phiConstant - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
phiConstantText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
phii - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
phij - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
Phij - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
phikp1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
phikp1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
phiLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
philat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
philat - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
phiLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
PHILIPS - gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType
philipsDicomGradExtract() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
philRelBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
philRelLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
phiMAX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
phir - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: For complete integrals phir = PI/2, phii = 0.
phiTable - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
phiText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
phiText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
phiText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
pHolder - Variable in class gov.nih.mipav.model.file.FileDataProvenance: The provenance holder to write from and read into
pHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: The provenance holder to display (or inject provenance data for "open provenance")
phone - Variable in class gov.nih.mipav.model.file.FileInfoCZI
phone - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Investigator's phone number.
PHOTO_INTERP - Static variable in class gov.nih.mipav.model.file.FileLSM: 3 = CCITT-T4, 4 = CCITT-T6, 5 = LZW, 32773 = packbits.
PHOTO_INTERP - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
PHOTO_INTERP - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
PHOTO_INTERP - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
photoBleachedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
photoBleachedIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
photoBleachedIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
photoBleachedVOI - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
PhotographicConversions() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions
photometric - Variable in class gov.nih.mipav.model.file.FileInfoBase: Image minimum intensity for single channel image.
photometricInterp - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Type of image - color, monochrome etc.
photometricInterpretation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
photometricInterpretation - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
PHOTOSHOP - Static variable in class gov.nih.mipav.model.file.FileSVS
PHOTOSHOP - Static variable in class gov.nih.mipav.model.file.FileTiff
PhotoshopDescriptor(MetadataExtractor.PhotoshopDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDescriptor
PhotoshopDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory
PhotoshopReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
PHPAS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PHTCA1(int, double[][], double[][], int, int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
pHYs - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
physText - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
pi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
pi - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform
PI - Static variable in class gov.nih.mipav.util.DoubleDouble: The value nearest to the constant Pi.
PI - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
PI_2 - Static variable in class gov.nih.mipav.util.DoubleDouble: The value nearest to the constant Pi / 2.
PI_MULT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
PI_SEARCH - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Used for angle searches in line VOI creation
pi4 - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform
PIAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
piButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
Pic - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
PIC - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .pic.
Pick() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Picking.
Pick() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI
Pick() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Picking support for adding Annotation points to the scene.
Pick() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Picking.
Pick() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Picking.
Pick(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer: Determine which widget is selected with the mouse/
Pick(Renderer, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget
Pick(Renderer, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Abstract picking.
Pick(Renderer, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget
Pick(Renderer, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget
Pick(Renderer, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Picking.
pickable - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn surface pickabel or not.
Pickable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The PickCanvas object that ties together the canvas and the surfaces branch group to allow pick operations on the scene.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Agent to set the burning point sphere pickable.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Agent to set the CoolTip probe pickable.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Agent to set the probe pickable.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Used to set the probe red guiding line pickable.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Agent to set the regular probe pickable.
pickCanvas - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Agent to set the theraml probe pickable.
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.GlyphLabel
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
pickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
pickCorrespondence(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Enables/disables picking correspondence points between the mesh and BrainSurfaceFlattener render.
PickCorrespondence(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Enables picking correspondence points between the surface renderer and the BrainSurfaceFlattener renderer.
PickCorrespondence(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Passes the triangle indices of the picked triangle to the BrainSurfaceFlattener renderer for display.
pickedColor - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Default color to highlight the selected nodes on control- mouse-click:
pickedEdge - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Current selected Edge.
pickedNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction
pickedNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
pickedNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Current selected Node.
pickedNodePrev - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: previously selected Node.
pickedPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
pickImageFile() - Method in class gov.nih.mipav.view.ViewJFrameBase: Brings up a FileChooser to pick a file.
pickingRenderBuffer - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
PickSlice3D(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
PickVolume3D(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
picListingPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
PICT - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .pict.
pid - Variable in class gov.nih.mipav.model.structures.jama.METIS.cnbr_t
pid - Variable in class gov.nih.mipav.model.structures.jama.METIS.vnbr_t
piDivTwo - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: pi div two *
pihf - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
pijbm - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
pimag - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
pImage2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pImage2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangulationEdge
pinfo - Static variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: The parameter information for this class
pinfo - Static variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: The parameter information for this class
pinfo - Static variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: The parameter information for this class
pinfo - Static variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: The parameter information for this class
pinholeGeometry - Variable in class gov.nih.mipav.model.file.FileInfoCZI
pinholeRadius - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
pinholeRadius - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
pinholeSize - Variable in class gov.nih.mipav.model.file.FileInfoCZI
pinholeSize - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
pinholeSizeAiry - Variable in class gov.nih.mipav.model.file.FileInfoCZI
pink - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
pinpol(double, double, boolean[], int[], int[]) - Method in class gov.nih.mipav.model.structures.VOIContour
pInterface - Variable in class gov.nih.mipav.model.file.FileXML: progress bar implementation (either through a JProgressBar or JPanel) passed in for reading/saving file.
pinv() - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2: Slight modification of pinv in dtiFitTensor.c.
PIO2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
PIO4 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
pipeline - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor: parent dialog
pipeline - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Parent DTI pipeline framework
pipeline - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
pipeline - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
pipeline - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: reference to the DTI Pipeline
pitchAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Rotation pitch angle.
pitchAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Rotation pitch angle.
pitchTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Spin transform.
pitchTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Spin transform.
pivalp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
pivec(double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pivec(DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
pivit - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: array of integers of dimension param containing the permutation matrix E in the decomposition QTranspose * J * D E = (R) (0) pivit[i] contains the index of the column that was moved into column i.
pivit - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: array of integers of dimension param containing the permutation matrix E in the decomposition QTranspose * J * D E = (R) (0) pivit[i] contains the index of the column that was moved into column i.
pivot(double[][], int, int, boolean, boolean, boolean, double, double, double[], double[], double[], boolean[], double[], boolean[], int, double[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
pivot1(double[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
PivotGrowth - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
pivots - Variable in class gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver
pixBuffer - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
pixBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Buffer used to store ARGB images of the image presently being displayed.
pixBuffer - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
pixBuffer - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: The buffer used to store the ARGB image of the image presently being displayed.
pixBuffer - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFrameImage: Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pixBuffer - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixBufferA_XY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Buffer that holds image A pixel data for the XY plane, used to build displayable image.
pixBufferB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
pixBufferB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to store ARGB image of the windowed imageB.
pixBufferB - Variable in class gov.nih.mipav.view.ViewJFrameImage: Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
pixBufferB - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
pixBufferB - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pixBufferB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixBufferB_XY - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Buffer that holds image B pixel data for the XY plane, used to build displayable image.
pixBufferCompA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixBufferCompB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Buffer used to store ARGB images of the image presently being displayed.
pixBufferDest - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Buffer used to store ARGB images of the image presently being displayed.
pixBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
pixBufferDest - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
pixdim - Variable in class gov.nih.mipav.model.file.FileNIFTI: qfac is stored in the otherwise unused pixdim[0].
pixDist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
pixDist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
pixDist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
pixDist - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
pixel - Variable in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: Pixel or degree.
pixel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: Pixel or degree.
Pixel(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel
Pixel(ContourPlot.Img, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Creates a new Pixel object referencing the value of specified Img at specified index.
Pixel(ContourPlot.Img, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Creates a new Pixel object referencing the value of specified Img at specified position.
PIXEL_BASED_VISUAL_INFORMATION_FIDELITY - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
PIXEL_GROUPING - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
PIXEL_GROUPING - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
PIXEL_MEASURES_SEQUENCE - Static variable in class gov.nih.mipav.model.file.FileDicom
PIXEL_SPACING - Static variable in class gov.nih.mipav.model.file.FileDicom
Pixel1(float, float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Used by AAM appearance model to get bilinear interpolation.
pixelBandwidth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
pixelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
PixelConvertingSpliterator(Spliterator<? extends P>, ContourPlot.PixelConvertingSpliterator.PixelConverter<P, T>) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
PixelConvertingSpliterator(Spliterator<? extends P>, Supplier<T>, BiConsumer<P, T>, BiConsumer<T, P>) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator: Constructs a new PixelConvertingSpliterator.
pixelField - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
pixelField - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
PixelGrid(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
PixelGridNode(int, int, AlgorithmNetworkSnake.PixelGrid.PixelGridNode, AlgorithmNetworkSnake.PixelGrid.PixelGridNode, AlgorithmNetworkSnake.PixelGrid.PixelGridNode, AlgorithmNetworkSnake.PixelGrid.PixelGridNode) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode
pixelID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 58 - 14 bytes.
pixelIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: pixelIncrement is increased above 1 if subsampling.
pixelIncrement - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pixelIncrement - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixelIncrementButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pixelIncrementButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pixelLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
pixelLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
pixelOrVOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
pixelPaddingValue - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Pixel Padding Value (0028, 0120).
pixelPadValue - Variable in class gov.nih.mipav.model.file.FileInfoBase: Some file formats have a pad value for pixels outside the acquisition domain.
pixelRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
pixelRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
pixelRepresentation - Variable in class gov.nih.mipav.model.file.FileInfoDicom: DICOM tag (0028, 0103) -1 = undefined 0 = unsigned 1 = signed
pixelRepresentation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
pixelResX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 50.
pixelResY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 54.
pixels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
pixels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
pixels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
pixels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
pixels_per_theta_step - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
pixelScaleArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
pixelsContract - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
pixelsContract - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
pixelsExpand - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
pixelsExpand - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
pixelsInRange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Variable that will store the total number of pixels in thresholding range
pixelsInRangeB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Variable that will store the total number of blue pixel values in thresholding range
pixelsInRangeG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Variable that will store the total number of green pixel values in thresholding range
pixelsInRangeR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Variable that will store the total number of red pixel values in thresholding range
pixelSize - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pixelSize - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pixelSize() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph
pixelSizeH - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
pixelSizeV - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: hDat dataStructure format public long version;.
pixelSizeX - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
pixelSizeY - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
pixelSizeZ - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
pixelSpacing - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
pixelSupplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
pixelSupplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
pixelSupplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
pixelSupplier - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
pixelsWidePerSample - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
pixelType - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data
pixelType - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
pixelUnitsArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
pixelUnitsNumber - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
pixelWidthText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
pixelWidthText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
pl - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: The parameter list (arguments)
pl - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: The parameter list (arguments)
pl - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: The parameter list (arguments)
pl - Variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: The parameter list (arguments)
place(FrontEdge, FrontEdge[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
place(FrontEdge, FrontEdge[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
place(FrontEdge, FrontEdge[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
PlaceHolder - Class in gov.nih.mipav.view.icons: Simple class located in the icons directory (package).
PlaceHolder() - Constructor for class gov.nih.mipav.view.icons.PlaceHolder
PLACEHOLDER_STR - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Used for XML tag for an image placeholder.
PLAIN_FORMAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogText: Specifies that the textbox not format the text in the display, as is defined by MIME type "text/plain".
plam - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
PLANAR_CONFIG - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
PLANAR_CONFIG - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
PLANAR_CONFIG - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
PLANAR_CONFIG - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
planarConfig - Variable in class gov.nih.mipav.model.file.FileInfoDicom: 0 = RGB, RGB, 1 = R R R, G G G, B B B.
planarConfig - Variable in class gov.nih.mipav.model.file.FileNRRD: 0 indicates pixels are RGB, RGB chunky 1 indicates pixels are RRR, GGG, BBB planar.
planarConfig - Variable in class gov.nih.mipav.model.file.FileRaw: DOCUMENT ME!
planarConfig - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
plane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
plane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
PLANE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: DOCUMENT ME!
PLANE_ORIENTATION_SEQUENCE - Static variable in class gov.nih.mipav.model.file.FileDicom
PLANE_POSITION_SEQUENCE - Static variable in class gov.nih.mipav.model.file.FileDicom
planeConstant - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
planeConstantSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Slider to adjust the front clipping plane constant.
planeFit() - Method in class gov.nih.mipav.model.structures.VOIBase: Fits a plane to the points in this contour and returns the plane.
planeGap - Variable in class gov.nih.mipav.model.file.FileInfoAfni: Used to show a zero filling gap in functional AFNI images -1 if no gap is present, 0 = x gap, 1 = y gap, 2 = z gap Interpolation is not performed across zero filling gaps.
planeName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
planeName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
planeName - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
planeOffset - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
PlaneRender - Class in gov.nih.mipav.view.renderer.J3D: Class PlaneRender: renders a single dimension of the ModelImage data as a texture-mapped polygon.
PlaneRender(ViewJFrameVolumeView, ModelImage, ModelLUT, ModelImage, ModelLUT, GraphicsConfiguration, int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.PlaneRender: Creates a new PlaneRender object.
PlaneRender_WM - Class in gov.nih.mipav.view.renderer.WildMagic: Class PlaneRenderWM: renders a single dimension of the ModelImage data as a texture-mapped polygon.
PlaneRender_WM(GLCanvas, double, VolumeTriPlanarInterface, Animator, VolumeImage, VolumeImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
PlaneRenderProstate - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework: Class PlaneRenderWM: renders a single dimension of the ModelImage data as a texture-mapped polygon.
PlaneRenderProstate() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Default PlaneRender interface.
PlaneRenderProstate(VolumeTriPlanarInterface, Animator, VolumeImage, VolumeImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
PlaneRenderProstate.LocalVolumeVOI - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
PlaneRenderProstate.LocalVolumeVOIVector - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
PlaneRenderProstate.PolylineVector - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
PlanesDividerLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
PlaneSize(Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
planeType - Variable in class gov.nih.mipav.model.file.FileGESigna4X
planeType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
planeType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 114.
planeVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
PlaneZoom - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
Plate(Integer, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Plate: Creates a new Plate object.
plateChamberID - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
plateChamberID - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
plateID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo: attributes.
plateID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate: Attributes.
plateInfo - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
PlateInfo(Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo: Creates a new PlateInfo object.
plates - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
plateVesselID - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
plateVesselID - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
platform - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
platform - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: the name of the operating system
platformIndex - Static variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
platformVersion - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: the operating system's version
play(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: If there is no other thread running, starts a new thread to play the mouse events.
play(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: If there is no other thread running, starts a new thread to play the mouse events.
play(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: If there is no other thread running, starts a new thread to play the mouse events.
PLAY_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Recorder/Player is playing.
PLAY_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Recorder/Player is playing.
PLAY_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Recorder/Player is playing.
play4D(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
play4D(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
play4DVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
play4DVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
play4DVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
playButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Display button.
playButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Display button.
playButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Display button.
playMouse - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Reference to PlayMouse class object.
playMouse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Reference to PlayMouse class object.
playMouse - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Reference to PlayMouse class object.
PlayMouse(boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.PlayMouse: Constructs a new thread and initializes the parameters which dictate what kind of play this is
PlayMouse(boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.PlayMouse: Constructs a new thread and initializes the parameters which dictate what kind of play this is
PlayMouse(boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse: Constructs a new thread and initializes the parameters which dictate what kind of play this is.
PLIST - gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType
PLIST_DTD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
plistExt - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
plmtry - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
pLocation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
pLocation2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
plogp(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
pLogP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
pLogP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
PLOGP(double) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
plogpArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
plogpres - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
plot - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
plot() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
plot(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
plot(double, double[], double[], int, int, int, double[][], double[][], double[][], double[][], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
PLOT - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Graphs (*.plt).
plot_mrr() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
plot_title - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
plotClass(double[][], int[], String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
plotDifferences(double[][], double[][], GaussianMixtureModelsIncompleteSamples.GMM[], GaussianMixtureModelsIncompleteSamples.GMM, double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
plotGraph(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Plots the graph by calling PolyLine.
plotGraphForPrinter(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Same as the plotGraph method, except the points used in this method are readable when sent to the printer.
plotinit() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PlotMeshIntoImage(ModelSimpleImage, CAAMMesh, double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Plots a mesh into an image.
plotpoly(float[], float[], double[][], double[], boolean, double[], int, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
plotResults(double[][], double[][], GaussianMixtureModelsIncompleteSamples.GMM, String, double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
plotrs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
plotSchwarzChristoffel(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph
PlotShapeIntoImage(ModelSimpleImage, CAAMShape, double[], double[], boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Wrapper to draw shape onto image
PlotShapeIntoImage(ModelSimpleImage, CAAMShape, double[], double[], boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Draws the shape into an image with a given color.
plottedRoot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Branch group that is the parent of the plotted surface.
plotterRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Surface plotter view.
plottree(int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
PLTE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType: Denotes a critical MetadataExtractor.PngChunk that contains palette entries.
Plugin - gov.nih.mipav.view.Argument.InstanceArgument
PlugIn - Interface in gov.nih.mipav.plugins: DOCUMENT ME!
PLUGIN - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: All plugin related files (.class, .jar, .zip, .tar, .tar.gz).
PLUGIN_ENTRY - Static variable in class gov.nih.mipav.plugins.ManifestFile: Signifies manifest file lists a plugin after delimiter.
PlugInAlgorithm - Interface in gov.nih.mipav.plugins: This is the MIPAV plugin interface for Algorithms.
PlugInBundle - Class in gov.nih.mipav.plugins: An abstract class for a plugin which reports other available plugins bundled inside of it.
PlugInBundle() - Constructor for class gov.nih.mipav.plugins.PlugInBundle
PluginDir - gov.nih.mipav.view.Argument.StaticArgument
pluginDirClassLoader - Static variable in class gov.nih.mipav.plugins.PluginUtil
PluginEyetrackerMode - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage
PlugInFile - Interface in gov.nih.mipav.plugins: An interface for a plugin which reads/writes images.
PlugInFileTransfer - Interface in gov.nih.mipav.plugins: An interface for a plugin which transfers files between two file systems.
PlugInGeneric - Interface in gov.nih.mipav.plugins: An interface for generic MIPAV Plug-Ins which don't require an open image and can be run from the ViewUserInterface menu.
plugInMenu - Variable in class gov.nih.mipav.view.ViewMenuBar: The menu listing installed plugins in the user's home directory.
pluginName - Variable in class gov.nih.mipav.view.ViewJPopupPlugin: String text of the button representing the plugin to be uninstalled.
pluginPanel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Reference to the plug-in panel in the 2x2 (old) layout.
pluginsMenu - Variable in class gov.nih.mipav.view.ViewUserInterface: Stores the plugins menu so that it can be removed/updated when plugins are installed.
pluginTree - Variable in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: The JTree that describes the plugin structure
PluginUtil - Class in gov.nih.mipav.plugins
PluginUtil() - Constructor for class gov.nih.mipav.plugins.PluginUtil
PlugInView - Interface in gov.nih.mipav.plugins: DOCUMENT ME!
plus(libdt.Mat, double) - Method in class gov.nih.mipav.model.algorithms.libdt
plus(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
plus(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.libdt
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
Plus(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EigenQuaternionParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LocalParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.MatrixParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
Plus(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
Plus(Vector<Double>, Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
plusplus() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
plyInputFilePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
plyInputFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
PlyInstance - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Ply file instance.
PlyInstance - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Ply file instance.
plyOutputFilePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
plyOutputFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
PlyReader - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
PlyReader() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyReader
PlyWriter - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
PlyWriter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyWriter
PlyWriter.NormalVector - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
PlyWriteTriangles(String, CoredVectorMeshData, int, Point3D, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
PlyWriteTriangles(String, CoredVectorMeshData, int, Point3D, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test
pMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
pMax - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
pMax - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
pMaxText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
pMesh - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
PMETIS_DEFAULT_UFACTOR - Variable in class gov.nih.mipav.model.structures.jama.METIS
pMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
pMin - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
pMin - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
pMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
pMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
pmv_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
PN - gov.nih.mipav.model.file.FileDicomTagInfo.VR
PNEWQ - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Png - gov.nih.mipav.model.file.MetadataExtractor.FileType
PNG - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .png.
PNG_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
PNG_SIGNATURE_BYTES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkReader
PngChromaticities(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities
PngChromaticitiesDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory
PngChunk(MetadataExtractor.PngChunkType, byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChunk
PngChunkReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChunkReader
PngChunkReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkReaderTest
PngChunkType(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
PngChunkType(String) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
PngChunkType(String, boolean) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
PngChunkTypeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest
PngColorType(int, String, int...) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngColorType
PngDescriptor(MetadataExtractor.PngDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngDescriptor
PngDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest
PngDirectory(MetadataExtractor.PngChunkType) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory
PngHeader(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngHeader
PngMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader
PngMetadataReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PngMetadataReaderTest
PngProcessingException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.PngProcessingException
PngProcessingException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.PngProcessingException
PngProcessingException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.PngProcessingException
pntsIndex - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: Connections between verticies, won't change.
pNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: number of principal components to be retained.
pNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
pNumberDialog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
po - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
poc - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: progression order change information
POC - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: indicates if a POC marker has been used O:NO, 1:YES
poc2warp(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
pochhammer(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
pockelCellSetting - Variable in class gov.nih.mipav.model.file.FileInfoCZI
pocs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: progression order changes
pOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Point that is currently being optimized.
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Point that is currently being optimized.
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DLMModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DLMModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
point - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed.Seed: DOCUMENT ME!
point - Variable in class gov.nih.mipav.model.algorithms.Vectornd: N-dimension vector
point - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.it_node
point - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
point - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
point(double, double, byte) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame.point
point(double, double, byte) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy.point
point() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
Point() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Point
Point() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Point
Point(double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Point
POINT - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
POINT - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
POINT - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the POINT is of type Line made up of a single point.
POINT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
POINT() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
POINT() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.POINT
POINT(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
POINT(POINT) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
POINT(SIZE) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
point_list - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
point_list - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
point_t() - Constructor for class gov.nih.mipav.model.algorithms.NelderMead.point_t
POINT_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in point VOI mode
point1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
point1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
point1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
point1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
point2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
point2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
Point2() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Point2
Point2(double, double) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Point2
Point2(LSCM.Point2) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Point2
POINT2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
point2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
point2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
Point3 - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
Point3 - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Point3() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Point3() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Point3(float[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Point3(float[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Point3(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Point3(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Point3(Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
Point3(Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
Point3D - Class in gov.nih.mipav.model.structures: Simple integer 3D point.
Point3D - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry
Point3D() - Constructor for class gov.nih.mipav.model.structures.Point3D: Initializes structure to (0,0,0).
Point3D() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Point3D
Point3D(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Point3D
Point3D(int, int, int) - Constructor for class gov.nih.mipav.model.structures.Point3D: Initializes structure to the supplied values.
Point3dSize(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
PointAdjacencyFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
PointAdjacencyFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointAdjacencyFunction
pointAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
PointAttribute(float, float, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
PointAttribute(int, int, double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
PointAux() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the complete point aux vector of the shape.
pointButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
pointCalculate() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
pointCalculation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: If pointCalculation is true, go to free range mode and set location at point1, point2.
pointCalculation - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
pointCalculation - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
pointCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
pointComparator() - Constructor for class gov.nih.mipav.model.algorithms.NelderMead.pointComparator
pointCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
pointCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.REGION
pointCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Standard cursor: point (resize, NE).
pointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
pointData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
PointDetails(Point2D) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
pointDistance(Point, Point) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
PointDistanceFunctor - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
PointDistanceFunctor() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointDistanceFunctor
PointerActive(boolean) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
PointerActive(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
PointerActive(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage
PointerActive(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
PointerActive(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
PointerActive(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
pointerBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Pointer behavior reference, not used now.
PointerBehaviorRenderer - Class in gov.nih.mipav.view.renderer.J3D.surfaceview: This behavior is supposed to "fly by pointer" - that is, zoom in, translate, and rotate to where the mouse is currently pointing.
PointerBehaviorRenderer(JPanelView) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.PointerBehaviorRenderer: Creates new pointer behavior, sets parent dialog, and resets MAX_ANGLE to the true start value.
PointeredPoint2D() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D: Creates point at (0,0)
PointeredPoint2D(double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D: Creates point using the specified arrays as pointers for this point's coordinates
PointeredPoint2D(double, double) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D: Creates point at (x,y)
PointerUpdater<E> - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
PointerUpdater() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
pointerVOIButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button for the "default" mode of the mouse, where clicking in the image shows the intensity of that voxel.
pointID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line
pointID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line
pointID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line
pointID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line
pointID - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line
PointIndexValueAndNormalFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
PointIndexValueAndNormalFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
PointIndexValueFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
PointIndexValueFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction
pointInTri(double, double, double, double, double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils
pointLineDistance(double, double, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
pointLineDistance(double, double, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
pointLineDistance(double, double, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
pointList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
pointList - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
pointList - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
pointLocation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
pointMarker - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
pointNum - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
pointNum - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
PointOnAssBorder(CDVector, CDVector, CDVector, CDVector, CDVector, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates the point to curve error between two shapes.
pointOrig - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
pointRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Point light radio button.
pointRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Point light radio button.
points - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
points - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Array used to hold the initial points, final points and costs
points - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Array used to hold the initial points, final points and costs
points - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
points - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Array used to hold the initial points, final points and costs
points - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points
points - Variable in class gov.nih.mipav.model.file.FileInfoCZI
points - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
Points() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Points: Creates a new ContourPlot.Points object which uses DefaultGlyph#CIRCLE_F for displaying its points.
Points() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns a vector of points
POINTS_AND_ELLIPSES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
POINTS_AND_ELLIPSES - Static variable in class gov.nih.mipav.view.dialogs.JDialogMSER
POINTS_ONLY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
POINTS_ONLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogMSER
pointsAndEllipses - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
pointsAndLinesButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph
pointsAndLinesGroup - Variable in class gov.nih.mipav.view.ViewJFrameGraph
pointsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
pointsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
pointScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
pointScale - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
pointsCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler
pointSetA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Input point set A (2D or 3D)
pointSetA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Input point set A (2D or 3D)
pointSetA - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pointSetA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pointSetB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Input point set B (2D or 3D)
pointSetB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Input point set B (2D or 3D)
pointSetB - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
pointSetB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pointSetBT - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
pointSetsRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
pointSetsRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
pointSetsRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Number of point triplets required before each ellipse find is performed
pointSetsRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Number of point triplets required before each hyperbola find is performed
pointSetsText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
pointSetsText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
pointsOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
pointsOnlyButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph
PointStack - Class in gov.nih.mipav.model.structures: PointStack is a structure used specifically in ViewComponentEditImage for use in the active level set generation and was built for speed.
PointStack(int) - Constructor for class gov.nih.mipav.model.structures.PointStack: PointStack.
pointsVisiblePanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
pointThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
pointThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector
pointToContour(int, int, int) - Method in class gov.nih.mipav.model.structures.VOI: Finds the minimum distance from a point to a contour.
pointVOI - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
pointVOI - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
pointVOIChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
pointWeights - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
pointx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
pointy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
poissDecay(int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.RandomNumberGen: This code is derived from PoissDecay.cpp, PoissonDeviate, PoissonRecur, and RandomDeviate, code accompanying Data Reduction and Error Analysis for the Physical Sciences, Third Edition, by Philip R.
POISSON - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Used to indicate added Poisson noise
POISSON - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise
poisson_full_multigrid2D(int, double[], double[], int, int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
poisson_full_multigrid3D(int, double[], double[], int, int, int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
poisson_multigrid2D(double[], int, double[], double[], int, int, int, double[], int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
poisson_multigrid3D(int, double[], double[], int, int, int, double[], int, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
PoissonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
PoissonRun - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson
PoissonRun() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun
pol3(double) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pol3(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
pol4(double[], double) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pol4(DoubleDouble[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
POLAK_RIBIERE - gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType
polarity - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: if true then fill inside the VOI.
polarity - Variable in class gov.nih.mipav.model.structures.VOI: Indicates if the VOI should mask ones or mask as zeros.
polarity - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: or if the source image is to be replaced.
PolarPoint() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
PolarPoint() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
PolarPoint(int, int, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
PolarPoint(int, int, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
PolarToCartesian2D(Vector2f, Vector2f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Polar coordinate to Cartesian coordinate, point based.
PolarToCartisian2D(ModelImage, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Whether this routine is necessary, the question will to be decided in the future.
polevl(double, double[], int) - Method in class gov.nih.mipav.model.algorithms.Cephes
POLEVL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
POLKINGS_FIRST_ORDER - Variable in class gov.nih.mipav.model.algorithms.ODE
POLKINGS_FIRST_ORDER - Variable in class gov.nih.mipav.model.algorithms.ODEEP
poll() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
pollTimer - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
poly - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
poly - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
poly() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.poly
poly(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.poly
Poly - Class in gov.nih.mipav.model.algorithms: Solution of cubic, quartic, and quintic equations Ported from code written by (c) Khashin S.I. http://math.ivanovo.ac.ru/dalgebra/Khashin/index.html // khash2 (at) gmail.com // Thanks to Alexandr Rakhmanin // public domain
Poly() - Constructor for class gov.nih.mipav.model.algorithms.Poly
POLY - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
POLY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
POLY_REC - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
POLY_REC() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.POLY_REC
poly_to_turn_rep(poly, TURN_REP) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
polya_fit(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_fit_m(double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_fit_ms(double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_fit_s(double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_fit_simple(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_logProb(double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_moment_match(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polya_sample(double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
polyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
polygon - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
polygon(double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon
POLYGON_EXTERIOR_TO_CIRCLE - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
POLYGON_EXTERIOR_TO_CIRCLE - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
polygon_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
POLYGON_TO_CIRCLE - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
POLYGON_TO_CIRCLE - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
POLYGON_TO_RECTANGLE - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
POLYGON_TO_RECTANGLE - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
polygonIndexToMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Convert from the polygon mode combo-box list index to the PolygonAttributes.POLYGON_LINE, PolygonAttributes.POLYGON_POINT, and PolygonAttributes.POLYGON_FILL values:
polygonIndexToMode(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Convert from the polygon mode combo-box list index to the PolygonAttributes.POLYGON_LINE, PolygonAttributes.POLYGON_POINT, and PolygonAttributes.POLYGON_FILL values:
polygonModeCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The combo box for the polygon mode to display.
polygonModeCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The combo box for the polygon mode to display.
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
PolygonShapeInfo(poly, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
POLYLINE - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type POLYLINE type of contour - end points NOT connected.
POLYLINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
POLYLINE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in polyline VOI mode
POLYLINE_SLICE - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type POLYLINE that will go through more than one slice.
POLYLINE_SLICE_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in polyline slice VOI mode
polylineCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: constant polyline counter
polylineCounterList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Polyline counter list
polylineList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Polyline list box in the dialog for surfaces.
Polylines - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
Polylines() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines
Polylines() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM.Polylines
PolylineVector - Class in gov.nih.mipav.view.renderer.WildMagic.Render
PolylineVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.PolylineVector
PolylineVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.PolylineVector
PolylineVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.PolylineVector
PolymomialConstantInterpolatingPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Polynomial - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Polynomial(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
Polynomial(Polynomial, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
polynomial_minimization_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary
PolynomialBothOutputArgumentsNullWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialConstantPolynomialReturnsNoRoots() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
polynomialContent - Variable in class gov.nih.mipav.model.algorithms.CVODES.DtpntMemRec
PolynomialCubicInterpolatingPolynomialFromValues() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialCubicInterpolatingPolynomialFromValuesAndGradients() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialCubicInterpolatingPolynomialFromValuesAndOneGradient() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialDataMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.PolynomialDataMemRec
PolynomialDeficientCubicInterpolatingPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialDifferentiateConstantPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialDifferentiateQuadraticPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialInvalidPolynomialOfZeroLengthIsRejected() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialLinearInterpolatingPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialLinearPolynomialWithNegativeRootWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialLinearPolynomialWithPositiveRootWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialMinimizeConstantPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialMinimizeLinearPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialMinimizeQuadraticPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialNullPointerAsImaginaryPartWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialNullPointerAsRealPartWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PolynomialParameterization
PolynomialQuadraticInterpolatingPolynomial() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuadraticPolynomialWithCloseRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuadraticPolynomialWithComplexRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuadraticPolynomialWithOneNegativeRootWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuadraticPolynomialWithPositiveRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuadraticPolynomialWithTwoNegativeRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuarticMonomialWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuarticPolynomialWithTwoClustersOfCloseRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuarticPolynomialWithTwoZeroRootsWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
PolynomialQuarticPolynomialWorks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
POLYPOINT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
polys - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
pop() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Pops a VR of the list.
pop() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Pops off minimum cost in tree.
pop() - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Pops off minimum cost in tree.
Pop() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
popFirstIn() - Method in class gov.nih.mipav.model.structures.IntVector: Pops first value off the FIFO array.
popGroupLength - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Flag used to support processing of GroupLength tags (XXXX, 0000)
popLastIn() - Method in class gov.nih.mipav.model.structures.IntVector: Pops last value off the FILO array.
POPQF1(int[], int[], int[], double[], double[], double[], double[], double[][], int, int, int, int, int, int, int[], int[], int[], int[], double, double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
POPQG1(int[], int[], int[], double[], double[][], double[][], int, int, int, int, int, int, int[], int[], int[], double, double, double[], double[], double[], double[], double[], double[], double[][], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
popt - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
populateAvailableObjectsLists() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Populates image and voi lists by calling ViewUserInterface and getting all images currently open, then getting all open VOIs associated with those images.
populateBrushList() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: populates the menu item showing available brushes to edit
populateFields() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor
populateFromProfile(ArrayList<FileDicomKey>) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
populateFromProfile(ArrayList<FileDicomKey>, ArrayList<String>, boolean[]) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Method used in the anonymize dialog profile that generates the tree structure from key information passed into the class.
populateFromProfile(ArrayList<FileDicomKey>, ArrayList<String>, boolean[]) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags: Method used in the anonymize dialog profile that generates the tree structure from key information passed into the class.
populateImagesTable() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: populate images table Builds a list of images to operate on from the template image.
populateInitialScriptTree(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Creates the tree structure from the parser code.
PopulateJacobianRowAndColumnBlockVectors(CeresSolver.Program, CeresSolver.CompressedRowSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
populateLists() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Fills the source and selected item lists with the appropriate data.
populateLists() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: permits control over what items go in which lists.
populateModel(Object[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Scroll List Code.
populateModel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Calls methods to populate model and direct view to draw itself.
populateOptionalPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: populates the options panel
populatePreview() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Previews the currently active slice would loosely go with either min or max sliding window.
populateRequiredPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
populateResampleMatrixFileValues() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
populateScriptTree(String[], String[], String[], int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
populateSourceTagsList() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
populateTalairachPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: popul
populateTalairachTab() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Looks at TalairachTransformInfo saved in ModelImage and populates the talairach scrollpane with the appropriate data.
popup - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Menu for setting raw info
popup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
popup - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Popup Menu for VOIs (non-point).
popup - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
popup - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
popup - Variable in class gov.nih.mipav.view.ViewJPopupPlugin: The stored popup menu
popup - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
popup - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
popupBackground(MouseEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Opens up the background popup menu.
popupEdge(MouseEvent, Edge) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Opens the node popup menu.
popupListener - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Listener to be added/removed depending on selection status
popupListener - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
PopupListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.PopupListener
PopupListener() - Constructor for class gov.nih.mipav.view.ViewToolBarBuilder.PopupListener
popupMenu - Variable in class gov.nih.mipav.view.JScrollMenu: The popup menu portion of the menu.
popupMenuCanceled(PopupMenuEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
popupMenuCanceled(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Popmenu canceled
popupMenuCanceled(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
popupMenuCanceled(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
popupMenuWillBecomeInvisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
popupMenuWillBecomeInvisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Popmenu unvisible
popupMenuWillBecomeInvisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
popupMenuWillBecomeInvisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
popupMenuWillBecomeVisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
popupMenuWillBecomeVisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Popmenu unvisible
popupMenuWillBecomeVisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
popupMenuWillBecomeVisible(PopupMenuEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
popupNode(MouseEvent, Node) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Opens the node popup menu.
popupPluginStaticRef - Static variable in class gov.nih.mipav.view.ViewJPopupPlugin: There only needs to be one ViewJPopupPlugin in MIPAV
popupPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Popup Menu for VOIPoints.
popupScrollBar - Variable in class gov.nih.mipav.view.JScrollPopupMenu
port - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Port number used to accept data.
port - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
portField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
portLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
pos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
pos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
pos - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdnode
pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_marker_info_t: position in codestream
pos - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
pos - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
pos(double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
POS - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType
POS - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType
posclamp - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
posclamp - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
PoseDisplacement(ModelSimpleImage, CAAMShape, CDVector, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Performs one pose regression experiment.
PoseDispVectors(CDVector, CDVector, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Generates a set pose displacement vectors.
PoseVec2Param(CDVector, double[], double[], double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts a pose vector to pose parameters: scale, theta, tx, ty.
position - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightItem: DOCUMENT ME!
position - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Block
position - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Cell
position - Variable in class gov.nih.mipav.model.file.FileGESigna4X
position - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
position - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 76 - Patient Poisition.
position - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
position - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: the light's position.
position - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode: Position in array seededCosts.
position - Variable in class gov.nih.mipav.view.RubberbandLivewire.TreeNode: Position in array seededCosts.
position() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
position_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
positionArray - Variable in class gov.nih.mipav.model.file.FileZVI
positionItem(double, double) - Constructor for class gov.nih.mipav.model.structures.VOIContour.positionItem: Creates a new positionItem object.
positionLowerComparator() - Constructor for class gov.nih.mipav.model.structures.VOIContour.positionLowerComparator
positionNumber - Variable in class gov.nih.mipav.model.file.FileZVI
positions - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
positionsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
positionToDICOMString(double, double, double) - Static method in class gov.nih.mipav.model.structures.ModelImage: Convert the image position to the String format (decimal string) to be stored in the DICOM tag (0020,0032) image (patient) orientation.
positionUpperComparator() - Constructor for class gov.nih.mipav.model.structures.VOIContour.positionUpperComparator
positionWeightComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightComparator
positionWeightItem(double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightItem: Creates a new positionWieghtItem object.
positionX - Variable in class gov.nih.mipav.model.structures.VOIContour.positionItem: DOCUMENT ME!
positionY - Variable in class gov.nih.mipav.model.structures.VOIContour.positionItem: DOCUMENT ME!
POSITIVE_INFINITY - Static variable in class gov.nih.mipav.util.DoubleDouble
positiveHysteresisFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
POSITRON_EMISSION_TOMOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality PET.
POSITRON_EMISSION_TOMOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality PET.
posRatios - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Ratios used to translate points in the result image to points in the source image.
possibleInt2Values - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
possibleInt2Values - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
possibleInt2Values - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Possible intensity values for second image.
possibleIntValues - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
possibleIntValues - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
possibleIntValues - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Possible intensity values for first image.
possibleIntValues1 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Initial guesses for bin values
post - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
post_process_1pass(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
post_process_1pass(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
POST_PROCESS_1PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
post_process_2pass(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
post_process_2pass(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
POST_PROCESS_2PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
post_process_data - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
post_process_prepass(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
post_process_prepass(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
POST_PROCESS_PREPASS - Static variable in class gov.nih.mipav.model.file.libjpeg
postContentLinesR - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
postContentTextR - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
POSTERIOR_MARGIN - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: Posterior Margin reference point.
POSTERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Posterior reference point.
posteriorCenter - Variable in class gov.nih.mipav.model.file.FileInfoMGH
posteriorMargin - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
posteriorMargin - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
posteriorMarginDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
posteriorMarginPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
posteriorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
posteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
posteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
posteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
posteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
posTextF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
postImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: private ModelImage srcImage; // image before acceptor photobleaching.
postImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
postmultiply(libdt.CovMatrix, libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
postNormalSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
postprocessor_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
PostRender(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Render the object after all other objects have been rendererd.
PostRender(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Render the object after all other objects have been rendererd.
PostSolveSummarize(CeresSolver.PreprocessedProblem, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
postSwap() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
posX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.TracingPoint
posX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.TracingPoint
posX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.TracingPoint
posX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.TracingPoint
posX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.TracingPoint
posY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.TracingPoint
posY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.TracingPoint
posY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.TracingPoint
posY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.TracingPoint
posY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.TracingPoint
potential - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
potential - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
pow(double) - Method in class gov.nih.mipav.util.DoubleDouble
pow(int) - Method in class gov.nih.mipav.util.DoubleDouble: Computes the value of this number raised to an integral power.
pow(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
Pow(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes the power 'dP' of each element.
pow_di(double, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
powButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
powEIntFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
powEIntFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
powEIntFlag - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
powell(double[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Minimization of entropy function of nParams variables.
POWELL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
POWELL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
POWELL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
POWELL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
POWELL_2_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.Lmmin
POWELL_2_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.LsqFit
POWELL_2_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.NESolve
POWELL_2_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
POWELL_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
POWELL_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.Lmmin
POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.LsqFit
POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.NESolve
POWELL_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
PowellBadlyScaledFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellBadlyScaledFunction
PowellEvaluator2(boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellEvaluator2
PowellSingularFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularFunction
PowellSingularJacobianFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.PowellSingularJacobianFunction
powellTolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Tolerance passed to Powell's algorithm.
power - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.FilamentArc: DOCUMENT ME!
power - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser
PowerButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
PowerWatershed_q2(int[][], int[], int[], int, Vector<Integer>, Vector<Short>, int, int, int, int, int, boolean, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
powi(double, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel
powi(double, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
powi(double, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel
ppDenoisingAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: DOCUMENT ME!
ppertC(libdt.Mat, libdt.Mat, double) - Method in class gov.nih.mipav.model.algorithms.libdt
PPFT(double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ppft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ppft3_ref(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
PPIAcceleration - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
ppm - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: if ppm == 1 --> there was a PPM marker
PPM - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement part-per-million.
PPM - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement part-per-million.
PPM - Static variable in class gov.nih.mipav.model.file.FileUtility: Portable Pixmap Utilities .ppm
ppm_buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: packet header storage original buffer
ppm_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: packet header store there for future use in t2_decode_packet
ppm_data_current - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t
ppm_data_first - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: pointer remaining on the first byte of the first header if ppm is used
ppm_data_read - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: size of the ppm_data
ppm_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: Number of bytes actually stored inside the ppm_data
ppm_len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: size of the ppm_data
ppm_markers - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: ppm markers data (table indexed by Zppm)
ppm_markers_count - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: number of ppm markers (reserved size)
ppm_previous - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: use in case of multiple marker PPM (case on non-finished previous info)
ppm_store - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: use in case of multiple marker PPM (number of info already store)
PPM_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - part-per-million.
ppnd16(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv
ppnd16_impl() - Constructor for class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
ppnd7(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv
ppnd7_impl() - Constructor for class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
PPolynomial - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
PPolynomial(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
PPolynomial(PPolynomial) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
pprot - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: error protection methods for packets (0,1,16,32,37-128)
pprot_packno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: packet number of packet protection specification (>=0)
pprot_tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: tile number of packet protection specification (>=0)
PPSBI1(double[], double, int, int, double[], double[], double, double[][], double, double[], double[], int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PPSBI7(double, int, double, int, int, double[], double[], double, double[][], double, double[], double[], int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ppt - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: If ppt == 1 --> there was a PPT marker for the present tile
ppt_buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: used to keep a track of the allocated memory
ppt_data - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: packet header store there for future use in t2_decode_packet
ppt_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: Number of bytes stored inside ppt_data
ppt_len - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: size of ppt_data
ppt_markers - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: ppt markers data (table indexed by Zppt)
ppt_markers_count - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: number of ppt markers (reserved size)
PQ_min() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQbucket(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQcount - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQdelete(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQempty() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQextractmin() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQhash - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQhashsize - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQinitialize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQinsert(delaunay.Halfedge, delaunay.Site, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
PQnext - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge
pqueue - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
prc_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Temporary values for Tile parts, initialised in pi_create_encode
prcE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: End value, initialised in pi_initialise_encode
prch - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: precinct height
prch - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: precinct height
prcS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start value, initialised in pi_initialise_encode
prcw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: precinct width
prcw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: precinct width
pre_and_fullData - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
PRE_PROCESS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
PRE_PROCESS_CONTEXT - Static variable in class gov.nih.mipav.model.file.libjpeg
PRE_PROCESS_DATA - Static variable in class gov.nih.mipav.model.file.libjpeg
pre_zero - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
pre_zero - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
preal - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifReader
PREAMBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfxxReader
preambleBuffer - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DICOM part 10 preample buffer.
preBlur() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Extends the m_abMask so all the voxels in the neighborhood are blurred.
prec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: precision
prec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: precision
prec - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_precision
prec - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
precedence(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: method that determines precedence
precincts - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
precincts_data_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
precis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
precise_result - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
precision - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
precision - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
precision - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters
precision - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Number of digits after decimal place to allow.
precisionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: User can choose the precision to display.
precno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: precinct that identify the packet
precno0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num start,Precinct num start, Precinct num end
precno1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num start,Precinct num start, Precinct num end
preCodeImage() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
precompute_BM(ModelImage, int, int, int, double, int[][]) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
PRECOMPUTED - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
PRECOMPUTED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
precon - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
PrecondAdjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
precondadjppft3(double[][][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
precondadjppft3_ref(double[][][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
PreconditionedConjugateGradient - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2018 Komahan Boopathy Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
PreconditionedConjugateGradient(double[][], double[][], double[], int, double, double[], int[], double[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
preconditioner - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverPerSolveOptions
Preconditioner() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
preconditioner_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver
preconditioner_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver
preconditioner_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
preconditioner_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
preconditioner_type_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
preconditioner_type_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
PreconditionerForZeroEBlocks(CeresSolver.PreconditionerType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
PreconditionerOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
PreconditionerType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType
PreconditionerTypeToString(CeresSolver.PreconditionerType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
preContentLinesR - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
preContentTextR - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
pred - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
PRED - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGDCInputStream
PRED - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGDCInputStream
predb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
predb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
PREDEFINED_THICKNESSES - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails
predict() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
predict(StochasticForests.Data, boolean) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
predict(Model, FeatureNode[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
predict(BufferedReader, DataOutputStream, LIBSVM.svm_model, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
predict(BufferedReader, DataOutputStream, svm_model, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
Predict - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Predict() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
PREDICT_AGAIN - Variable in class gov.nih.mipav.model.algorithms.CVODES
predict_all - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
predict_all - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
predict_exit_with_help() - Method in class gov.nih.mipav.model.algorithms.LIBSVM
predict_one_class_probability(LIBSVM.svm_model, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
predictInternal(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
predictInternal(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
predictInternal(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
predictInternal(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
predictInternal(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
predictInternalInThread(int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictInternalInThread
prediction_data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictTreesInThread
prediction_mode - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
prediction_terminal_nodeIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
prediction_type - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
prediction_type - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
predictions - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
PredictionType() - Constructor for enum gov.nih.mipav.model.algorithms.StochasticForests.PredictionType
predictor - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
predictor - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
predictor - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
predictor - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
PREDICTOR - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
PREDICTOR - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
PREDICTOR - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
PREDICTOR - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
predictProbability(Model, FeatureNode[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
predictTreesInThread(int, StochasticForests.Data, boolean) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictTreesInThread
predictValues(Model, FeatureNode[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
PREF_ACTIVE_IMAGE_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the active image color.
PREF_ACTIVE_IMAGE_COLOR_BORDERSIZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the active image color border size
PREF_AFNI_ORDER_LOAD - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether DICOM ordering should be used by default for loading AFNI images
PREF_ALWAYS_SAVE_IMG_AS_ANALYZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether .hdr/.img files should always be written in analyze format (as opposed to asking whether to save as interfile or nifti).
PREF_ALWAYS_SAVE_IMG_AS_INTERFILE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether .hdr/.img files should always be written in interfile format (as opposed to asking whether to save as analyze or nifti).
PREF_ALWAYS_SAVE_IMG_AS_NIFTI - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether .hdr/.img files should always be written in nifti format (as opposed to asking whether to save as analyze or interfile).
PREF_ALWAYS_SAVE_MNC_AS_MINC1 - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether .mnc files should always be written in minc1 CDF format (as opposed to asking whether to save as minc1 or minc2).
PREF_ALWAYS_SAVE_MNC_AS_MINC2 - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether .mnc files should always be written in minc2 HDF5 format (as opposed to asking whether to save as minc1 or minc2).
PREF_APP_ICON - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the application icon.
PREF_APP_TITLE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the application title.
PREF_ASK_DICOM_RECEIVER - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether to ask about starting dicom receiver on startup.
PREF_AUTOSTART_DICOM_RECEIVER - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether to enable the dicom receiver on startup.
PREF_BRICS_CONFLICT_RESOLUTION - Static variable in class gov.nih.mipav.view.Preferences
PREF_BRICS_PLUGIN_BIDS_DIR - Static variable in class gov.nih.mipav.view.Preferences
PREF_BRICS_PLUGIN_CSV_DIR - Static variable in class gov.nih.mipav.view.Preferences
PREF_BRICS_PLUGIN_OUTPUT_DIR - Static variable in class gov.nih.mipav.view.Preferences
PREF_BUG_REPORT_EMAIL - Static variable in class gov.nih.mipav.view.Preferences
PREF_BUG_REPORT_NAME - Static variable in class gov.nih.mipav.view.Preferences
PREF_BUG_REPORT_URGENCY - Static variable in class gov.nih.mipav.view.Preferences
PREF_CLOSE_FRAME_CHECK - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if user should be prompted on closing a frame.
PREF_COMPLEX_DISPLAY - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates method used to display complex data values on MIPAV toolbar (MIPAV visually always shows magnitude or log magnitude).
PREF_CONTINUOUS_VOI_CONTOUR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether [SHIFT] must be held down to draw continuous contours (false = hold-shift).
PREF_CROSSHAIR_CURSOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the crosshair cursor to be used.
PREF_CROSSHAIR_PIXEL_GAP - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the pixel gap away from the center of the crosshair (in one direction) actual gap is 2x.
PREF_DATA_PROVENANCE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if data provenance is turned on.
PREF_DATA_PROVENANCE_FILENAME - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the path where the system data provenance should be stored
PREF_DATA_PROVENANCE_MODE - Static variable in class gov.nih.mipav.view.Preferences: constant for logging.
PREF_DEBUG - Static variable in class gov.nih.mipav.view.Preferences: Constant for debug string.
PREF_DEBUG_ALGORITHM - Static variable in class gov.nih.mipav.view.Preferences
PREF_DEBUG_COMMS - Static variable in class gov.nih.mipav.view.Preferences
PREF_DEBUG_FILEIO - Static variable in class gov.nih.mipav.view.Preferences
PREF_DEBUG_MINOR - Static variable in class gov.nih.mipav.view.Preferences
PREF_DEBUG_SCRIPTING - Static variable in class gov.nih.mipav.view.Preferences
PREF_DEFAULT_DISPLAY - Static variable in class gov.nih.mipav.view.Preferences: Constant to indicate default brightness and color display to screen
PREF_DEFAULT_FRAME_RATE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default frame rate
PREF_DEFAULT_IMAGE_BROWSER_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the initial directory in which to open the file chooser of the image browser.
PREF_DICOM_BROWSER_CONFIG - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating the DICOM browser configuration.
PREF_DICOM_SAVE_DICTIONARY - Static variable in class gov.nih.mipav.view.Preferences: constant that indicates the dicom save dictionary.
PREF_DICOM_STORAGE_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default dicom storage directory.
PREF_EDIDTORWINDOW_SIZE - Static variable in class gov.nih.mipav.view.Preferences
PREF_FAST_TRIPLANAR_REPAINT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether the triplanar frame should wait for a mouse released event before repainting all 9 tri-planar images.
PREF_FILE_LUT_DISPLAY - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether image will display using a stored LUT (from image file or generic to image type)
PREF_FILE_TEMP_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the file temp directory.
PREF_FILENAME_FILTER - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the filename filter.
PREF_FLIP_NIFTI_READ - Static variable in class gov.nih.mipav.view.Preferences
PREF_FORCE_HISTO_UBYTE - Static variable in class gov.nih.mipav.view.Preferences
PREF_GPU_COMP_ENABLED - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if computing on the GPU is enabled
PREF_HISTOGRAM_DISPLAY - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether image is updated in real-time on histogram changes
PREF_IMAGE_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the current image directory.
PREF_IMAGE_LEVEL_DATA_PROVENANCE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if data provenance is turned on for individual images (and saved on image-save).
PREF_IMAGE_TOOLBAR_ON - Static variable in class gov.nih.mipav.view.Preferences: Constant identifying if the miscellaneous toolbar is on by default.
PREF_INTENSITY_LABEL_BACKGROUND_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the intensity label background color.
PREF_INTENSITY_LABEL_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the intensity label color.
PREF_INTERPOLATE_MODE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the mode of image interpolation used for display
PREF_LAST_PAINT_BRUSH - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the last used paint brush so that it will be set as the default when new images are opened or mipav is restarted.
PREF_LAST_SCRIPT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the last script that was run.
PREF_LAST_STACK_FLAG - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the last stack flag.
PREF_LAST_X_IMAGES - Static variable in class gov.nih.mipav.view.Preferences: constant for the names of the last X number of images used to be shown in quicklist.
PREF_LAX_CHECK - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if lax file should be checked on mipav start.
PREF_LB_BORDER_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox border color variable.
PREF_LB_BORDER_SIZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox border size variable.
PREF_LB_CUPDATE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates continuous update of LightBox
PREF_LB_GRID_COL - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox grid column variable.
PREF_LB_GRID_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox grid color variable.
PREF_LB_GRID_ROW - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox grid row variable.
PREF_LB_GRID_SIZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox grid size variable.
PREF_LB_INCREMENT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the increment between displayed lightbox slices
PREF_LB_LOCATION - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox location variable.
PREF_LB_MAG - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox magnification variable.
PREF_LB_ROW_DEPENDENT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox row dependant variable.
PREF_LB_SELECTED_BORDER_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox selected border color variable.
PREF_LB_SELECTED_BORDER_SIZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox selected border size variable.
PREF_LB_TSLICE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the LightBox individual t-slice variable.
PREF_LEVEL - Static variable in class gov.nih.mipav.view.Preferences
PREF_LOG_FILENAME - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the pathname of the log file.
PREF_LOGGING_ENABLED - Static variable in class gov.nih.mipav.view.Preferences: Constant for whether logging is enabled
PREF_LOGMAG_DISPLAY - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether the log of the magnitude of an image is used for image display
PREF_MAINWINDOW_SIZE - Static variable in class gov.nih.mipav.view.Preferences
PREF_MAX - Static variable in class gov.nih.mipav.view.Preferences
PREF_MAX_DEBUG_LINES - Static variable in class gov.nih.mipav.view.Preferences
PREF_MAX_HEAP_SIZE - Static variable in class gov.nih.mipav.view.Preferences: The maximum heap size.
PREF_MENU_FONT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the menu font.
PREF_MENU_FONT_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the menu font color.
PREF_MENU_FONT_SIZE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the menu font size.
PREF_MIN - Static variable in class gov.nih.mipav.view.Preferences
PREF_MULTI_THREADING_ENABLED - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicated if the multi-theading is enabled
PREF_NDAR_PLUGIN_CSV_DIR - Static variable in class gov.nih.mipav.view.Preferences
PREF_NDAR_PLUGIN_DATASTRUCT_NAME - Static variable in class gov.nih.mipav.view.Preferences
PREF_NDAR_PLUGIN_OUTPUT_DIR - Static variable in class gov.nih.mipav.view.Preferences
PREF_NDAR_PLUGIN_SERVER - Static variable in class gov.nih.mipav.view.Preferences
PREF_NINDS_ANON_PLUGIN_CSVDIR - Static variable in class gov.nih.mipav.view.Preferences: ?
PREF_NINDS_ANON_PLUGIN_INPUTDIR - Static variable in class gov.nih.mipav.view.Preferences: ?
PREF_NINDS_ANON_PLUGIN_OUTPUTDIR - Static variable in class gov.nih.mipav.view.Preferences: ?
PREF_NUMBER_OF_THREADS - Static variable in class gov.nih.mipav.view.Preferences: Constant that specifies how many system threads user would like MIPAV to use
PREF_OPEN_IMAGES_IN_TILED_FORMAT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if images are to be open im tiled format
PREF_OVERWRITE_STATISTICS - Static variable in class gov.nih.mipav.view.Preferences: constant on whether to overwrite the voi statistics file automatically
PREF_OVERWRITE_VOI_STATS - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating if VOI statistics file should be overwritten.
PREF_PAINT_OPACITY - Static variable in class gov.nih.mipav.view.Preferences
PREF_PAINT_TO_MASK_NEW - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the Paint-to-Mask operation should output to a new image
PREF_PAINT_TOOLBAR_ON - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating if the Paint Toolbar is on by default.
PREF_PLUGIN_ALGORITHM - Static variable in class gov.nih.mipav.view.Preferences: plugin of algorithm type.
PREF_PLUGIN_FILE - Static variable in class gov.nih.mipav.view.Preferences: plugin of file type.
PREF_PLUGIN_INSTALL_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the current directory where plugins can be installed from.
PREF_PLUGIN_VIEW - Static variable in class gov.nih.mipav.view.Preferences: plugin of view type.
PREF_QUICK_MASK_NEW - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the Quick Mask operation should output to a new image
PREF_QUICKLIST_NUMBER - Static variable in class gov.nih.mipav.view.Preferences: number of recently used images to store in quicklist.
PREF_RAW_BIG_ENDIAN - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image big endian.
PREF_RAW_DATA_OFFSET - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image data offset.
PREF_RAW_EXTENTS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image extents.
PREF_RAW_RESOLUTIONS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image resolutions.
PREF_RAW_TYPE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image type.
PREF_RAW_UNITS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the default raw image units.
PREF_RELATIVE_WINDOW_LEVEL - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if window/level changes should be relative to the current transfer function values
PREF_RGB_PAINT_COMPONENTS - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating which channels should be used for applying paint to a RGB image
PREF_SAVE_ALL_ON_SAVE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates use of saving images, vois, and transfer functions.
PREF_SAVE_DEFAULTS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the last used parameters for algorithm dialogs should be used when they are opened.
PREF_SAVE_PROMPT_OVERWRITE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if a prompt should be shown before an image file is overwritten.
PREF_SAVE_XML_THUMBNAIL - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the saving of the xml thumbnail during a save.
PREF_SCRIPT_DIR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the script directory.
PREF_SCRIPTING_TOOLBAR_ON - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the Scripting toolbar should be shown by default.
PREF_SHORTCUTS - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating the application shortcuts (user defined).
PREF_SHOW_DICOM_OVERLAYS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the DICOM overlay should be shown.
PREF_SHOW_IMAGE_OVERLAYS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the image overlay should be shown.
PREF_SHOW_INTENSITY_ON_LEFT_CLICK - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if left mouse click inside image should cause intensity value to display
PREF_SHOW_LINE_ANGLE - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether the angle of line VOIs should be shown on screen.
PREF_SHOW_OUTPUT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether to show output.
PREF_SHOW_OVERLAYS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether to show image overlays.
PREF_SHOW_PAINT_BORDER - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the paint border shown.
PREF_SHOW_PRIVATE_TAGS - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the private DICOM tags are to be shown
PREF_SHOW_SPLASH - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the splash graphic should be shown when mipav starts.
PREF_SHOW_UI_LF - Static variable in class gov.nih.mipav.view.Preferences: Class name for selected look and feel type, can also be "None" (default selection)
PREF_SHOW_VOI_NAME - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether to show the VOI name.
PREF_SHOW_WINLEV_ON_RIGHT_CLICK - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if right mouse click inside image should cause window/level changes
PREF_STARTING_HEAP_SIZE - Static variable in class gov.nih.mipav.view.Preferences: The starting heap size.
PREF_TRIM_FLAG - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the VOI Trim flag for trimming adjacent points.
PREF_TRIM_MASK - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the mask trim level variable.
PREF_TRIM_VOI - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the VOI Trim level variable.
PREF_TRIPLANAR_2X2_LAYOUT - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates whether the triplanar frame should use the old 2x2 layout or the newer 3x1 layout.
PREF_TRIPLANAR_SCROLL_ORIGINAL - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the triplanar should scroll the original image
PREF_TRIPLANAR_SNAP90 - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if triplanar protractor should snap to nearest multiple of 90 degrees.
PREF_USE_INCORRECT_ACPC_XDIM - Static variable in class gov.nih.mipav.view.Preferences
PREF_USER_FILETYPE_ASSOC - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the user defined file type associations.
PREF_USER_FILETYPES - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the user defined file types.
PREF_USER_FILETYPES_TEXTFIELDS - Static variable in class gov.nih.mipav.view.Preferences: ?
PREF_VOI_DRAW_COLOR - Static variable in class gov.nih.mipav.view.Preferences: the voi draw color constant.
PREF_VOI_LPS_SAVE - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating if VOIs should be saved as LPS or file coordinates
PREF_VOI_POINT_DRAW_TYPE - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating the look of VOI Points drawn on an image.
PREF_VOI_START_COLOR - Static variable in class gov.nih.mipav.view.Preferences: the starting color for VOIs (first drawn).
PREF_VOI_TEXT_BACKGROUND_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the last used VOI text background color.
PREF_VOI_TEXT_COLOR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates the last used VOI text color.
PREF_VOI_THICKNESS - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating the VOI Thickness.
PREF_VOI_TOOLBAR_ON - Static variable in class gov.nih.mipav.view.Preferences: Constant indicating if the VOI Toolbar is on by default.
PREF_WARN_AUDIO_AVI - Static variable in class gov.nih.mipav.view.Preferences: constant for warning the user when audio will be discarded from opened AVIs.
PREF_WINDOW - Static variable in class gov.nih.mipav.view.Preferences
PREF_ZOOM_LINEAR - Static variable in class gov.nih.mipav.view.Preferences: Constant that indicates if the zoom should be linear (otherwise geometric)
Preferences - Class in gov.nih.mipav.view: This class reads the MIPAV preference file.
Preferences() - Constructor for class gov.nih.mipav.view.Preferences
Preferences.ComplexDisplay - Enum in gov.nih.mipav.view: Defines options for displaying pixel values of complex images.
Preferences.DefaultDisplay - Enum in gov.nih.mipav.view: Defines options for defining color and brightness display based on pixel values.
Preferences.InterpolateDisplay - Enum in gov.nih.mipav.view: Defines options for interpolating displayed image slices.
Preferences.LogConfig - Class in gov.nih.mipav.view
Preferences.LogLevel - Enum in gov.nih.mipav.view
Preferences.OperatingSystem - Enum in gov.nih.mipav.view: Defines operating system on which MIPAV is running.
Preferences.SystemArchitecture - Enum in gov.nih.mipav.view: Defines system architecture on which MIPAV is running.
preferencesDir - Static variable in class gov.nih.mipav.view.Preferences: The place where user-individual mipav files should be put.
PreferencesDir - gov.nih.mipav.view.Argument.StaticArgument
preferencesFile - Static variable in class gov.nih.mipav.view.Preferences: The MIPAV preferences file path and name.
preferencesFileName - Static variable in class gov.nih.mipav.view.Preferences: The MIPAV preferences file name (without path).
preferencesFileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This array is the list of file extensions that is pulled from the Preferences.
PreferencesName - gov.nih.mipav.view.Argument.StaticArgument
preferredActiveColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
preferredCrosshair - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
preferredLayoutSize(Container) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
prefImageName - Variable in class gov.nih.mipav.model.file.FileBRUKER: The preferred image name, used if inversion time exists.
prefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
preformOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
pregn(double[], int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
pregn(DoubleDouble[], int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
prekm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: scalar containing the predicted reduction in the objective if pseudoRank from previous step is used.
prekm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: scalar containing the predicted reduction in the objective if pseudoRank from previous step is used.
Prepare(CeresSolver.ResidualBlock, int, CeresSolver.SparseMatrix, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ScratchEvaluatePreparer
Prepare(CeresSolver.ResidualBlock, int, CeresSolver.SparseMatrix, double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
prepare_for_output_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
prepare_for_output_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
PREPARE_FOR_OUTPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg
prepare_new_evaluation_point - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
prepare_num_calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
prepare_parameter_hash - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
prepare_range_limit_table8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
prepare_range_limit_table9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
prepare_requested_jacobians - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback
PrepareForEvaluation(boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluationCallback
PrepareForEvaluation(boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.NoOpEvaluationCallback
PrepareForEvaluation(boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback.InnerClass
prepareForNextLevel() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
PrepareNextRun(CVODES.CVodeMemRec, int, int, CVODES.NVector, double[][], int, int, CVODES.SUNLinearSolver) - Method in class gov.nih.mipav.model.algorithms.CVODES
preParserHandler - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
prepConstC(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
prepConstD(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
prepopulateField(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: prepopulates fields
prepPulse - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 644 Prepartory pulse option.
Preprocess(CeresSolver.SolverOptions, CeresSolver.ProblemImpl, CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchPreprocessor
Preprocess(CeresSolver.SolverOptions, CeresSolver.ProblemImpl, CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preprocessor
Preprocess(CeresSolver.SolverOptions, CeresSolver.ProblemImpl, CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
PreprocessedProblem() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
PreprocessForGivenLinearSolverAndVerify(CeresSolver.LinearSolverType, CeresSolver.ProblemImpl, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
preprocessInputImages(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
preprocessInputImages2D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
Preprocessor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Preprocessor
preprocessor_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
preProsLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
preProsText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
PreRender(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: PreRender renders the proxy geometry into the PBuffer texture.
prescan_quantize(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
prescan_quantize(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
PRESCAN_QUANTIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
prescan_r1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 288 PreScan R1-Analog.
prescan_r2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 290 PreScan R2-DIgital.
preScanOpts - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 816 bitmap of prescan options.
prescanReceiveAttenuation1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
prescanReceiveAttenuation1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
prescanReceiveAttenuation2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
prescanReceiveAttenuation2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
presContexts - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: DOCUMENT ME!
presContexts - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: A list of presentation context objects.
prescribedImageNumbers - Variable in class gov.nih.mipav.model.file.FileGESigna4X
prescribedImageNumbers - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
prescribedSeriesNumbers - Variable in class gov.nih.mipav.model.file.FileGESigna4X
prescribedSeriesNumbers - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
present - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: DOCUMENT ME!
presentation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
presentation - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
presentationContextID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: The ID for the presentation context.
presentationContextID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept: Presentation Context ID.
PresentationContexts - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: A list of Presentation contexts.
presentNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
presentNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
presentNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
presentOrientBoxX - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
presentOrientBoxY - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
presentOrientBoxZ - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
presentOrientLabel2 - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
presentViewType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
presentvoiIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
presentvoiIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
PRESERVE_ZERO - Static variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter: Scale type: max > -min: d' = d/max in [min/max,1] max < -min: d' = -d/min in [-1,-max/min]
preserveBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
preserved - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: check whether the mask can be affected by new paint or not.
preserveFOV - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
preserveFOV2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
preserveFOVButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
preserveOutputDimsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
presetHue - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
presetHue - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
presetHue - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
PRESMOOTHING_SIGMA - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
PreSolveSummarize(CeresSolver.SolverOptions, CeresSolver.ProblemImpl, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
pressed - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: If any of the mouse move button pressed.
pressed - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: If any of the mouse move button pressed.
pressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: If any of the mouse move button pressed.
pressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: If any of the mouse move button pressed.
pressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Flag to indicate mouse pressed or not.
pressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: If any of the mouse move button pressed.
pressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
pressed - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
pressedBorder - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
pressedBorder - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
pressedBorder - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
pressedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
pressedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
pressedBorder - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder: A border to use for pressed buttons.
pressedCheckEven - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
pressedCheckOdd - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
pressedOK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM
pressedOK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: DOCUMENT ME!
pressedOK - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
pressedStart - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
presub(double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
presub(DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
prev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
prev - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache.head_t
prev - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
prev - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node
prev - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
prev - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
prev - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache.head_t
Prev(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
PREV_CONV_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
PREV_ERR_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES
prev_error - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
PREV_INDEX(int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
PREV_OFF - Static variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
PREV_ON - Static variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
PreValidate(float, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
PreValidate(OctNode, float, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
prevContourCost - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
prevDeltaWeight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
preventUpdateFlag - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater
prevertex - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
preverticesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
prevEventTime - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Previous mouse press event time stamp.
prevEventTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: current and previous key press time.
prevEventTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Previous mouse press event time stamp.
prevEventTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: current and previous key press time.
prevEventTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: current and previous key press time.
prevHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
PREVIEW - Static variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
previewFilename - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
PreviewImageContainer - Interface in gov.nih.mipav.view: Title: PreviewImageContainer
previewMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
previewMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
previewMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
previewMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
previewPanel - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
previous - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
previous - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: internal objects.
previous - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
previousLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
previousPaintBrush - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: The previous paint brush we were using when the user temporarily changes the paint brush size using keyboard shortcuts (by pressing 1, 2, 3, 4).
previousRecognizedCode - Variable in class gov.nih.mipav.model.file.FileSVS
previousRecognizedCode - Variable in class gov.nih.mipav.model.file.FileTiff
prevPageButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
prevPageMenuItem - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
prevSelectedTransformRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
prevXPoints - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
prevYPoints - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
prFileDir - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: par rec file dir
prFileDir - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: par/rec file directory
prFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: par rec file name
prFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: par/rec file name
prfinl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
prg - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Progression order enum
prg - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: progression order
prg - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t: progression order
prg1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Progression order enum
Prim - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Prim - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
primaryEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo
primaryEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
primaryModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
primaryModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: model associated with primary image information.
primaryModel - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
primaryTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: DOCUMENT ME!
primaryTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: primary image information table.
primaryTable - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
primaryTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo: tpe holds the type of editor to be used; editor holds the editor dialog.
primaryTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: Type holds the type of editor, editor holds the actual editor dialog.
PrimButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
primitiveType() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph
principalAxis(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour: From statics it is known that any planar shape or closed curve possesses two principal axes 90 degrees apart intersecting at the centroid of the area.
principalComponentsOnly - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
print() - Method in class gov.nih.mipav.model.structures.ModelImage: Prints basic image parameters to the System.out.
print() - Static method in class gov.nih.mipav.view.Preferences: Prints mipav.preferences to System.out.
print() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics: Print the statistics information to System.out.
print() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Print out the matrix.
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
print() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Prints the current graph being displayed to the printer.
print(double[]) - Static method in class gov.nih.mipav.util.ArrayUtil: A utility function to print out a double array.
print(double[], String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: The utility function used to print information.
print(float[]) - Static method in class gov.nih.mipav.util.ArrayUtil: A utility function to print out a double array.
print(MatrixListItem, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
print(MatrixListItem, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
print(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Internal support for 'void print (String)' and 'void print (String, ModelTriangleMesh[])'.
print(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord: Support for saving the collapse records to a text file.
print(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Internal support for 'void print (String)' and 'void print (String, ModelTriangleMesh[])'.
print(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Internal support for 'void print (String)' and 'void print (String, ModelTriangleMesh[])'.
print(String) - Method in interface gov.nih.mipav.model.algorithms.LIBSVM.svm_print_interface
print(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Save the triangle mesh to a text file.
print(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Save the quad mesh to a text file.
print(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Print the vertex-edge-triangle table to a text file.
print(String) - Method in interface gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_print_interface
print(String, ModelClodMesh[]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: Save an array of triangle meshes to a text file.
print(String, ModelTriangleMesh[]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh: Save an array of quad meshes to a text file.
print(Vector, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
print(Vector, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
Print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
Print() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
print_double_vec(String, int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
print_ilu_options(SuperLU.superlu_options_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
print_int_vec(String, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
print_options(SuperLU.superlu_options_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
print_panel_seg(int, int, int, int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
printAllWeights() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
printAscii(PrintWriter, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Print the contents of the TriMesh in ascii format.
PrintCtrl(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
printData - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
printDisp - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Modality: The way this modality will be displayed to the user.
printExitStatus(int) - Method in class gov.nih.mipav.model.algorithms.NESolve
printExitStatus(int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
printf(Formatter, String, Object...) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
PrintFinalStats(CVODES.CVodeMemRec) - Method in class gov.nih.mipav.model.algorithms.CVODES
PrintFinalStats(CVODES.CVodeMemRec, boolean) - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
PrintFinalStats(CVODES.CVodeMemRec, boolean) - Method in class gov.nih.mipav.model.algorithms.CVODES
PrintFinalStats(CVODES.CVodeMemRec, int, double) - Method in class gov.nih.mipav.model.algorithms.CVODES
printflags - Variable in class gov.nih.mipav.model.algorithms.Lmmin: Bits ored to show where to output diagnostics
PrintFullHelp() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Print full help info
printHeader() - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
printHeader() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
printHeader() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
PrintHelp() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Print short help info
printhisto(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: a debug tool.
printhisto(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: a debug tool.
printImage() - Method in class gov.nih.mipav.view.ViewJFrameImage: Method to send an image to the printer.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: debuger for file names read.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Debugger for test the image and VOis reading.
printImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Debugger for test the image and VOis reading.
printImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
printImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
printImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
PrintIMDescriptor(MetadataExtractor.PrintIMDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDescriptor
PrintIMDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDirectory
printMap(int[][], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
printMapOnBottom(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
printMapOnLeft(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
printMapOnRight(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
printMapOnTop(int[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
printNIItable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
printNIItable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
printNIItable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
printParamInfo(MsgLogger, String[][]) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Prints the parameters in 'pinfo' to the provided output, 'out', showing the existing defaults.
printParamInfo(MsgLogger, String[][]) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Prints the parameters in 'pinfo' to the provided output, 'out', showing the existing defaults.
printParamInfo(MsgLogger, String[][]) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Prints the parameters in 'pinfo' to the provided output, 'out', showing the existing defaults.
printParamInfo(MsgLogger, String[][]) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Prints the parameters in 'pinfo' to the provided output, 'out', showing the existing defaults.
printProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
printProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
printProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
printProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
printProstateSTLAscii(PrintWriter, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Print the contents of the TriMesh in STL ascii format.
printRange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
printResults() - Method in class gov.nih.mipav.model.algorithms.libdt
printResults(GaussianMixtureModelsIncompleteSamples.GMM, String) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
printSMFAscii(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
printSpaceNavData() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
printStackTrace() - Method in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
printStackTrace(PrintStream) - Method in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
printStackTrace(PrintWriter) - Method in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException
PrintStat - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
PrintStatistics() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Print statistics
PrintStatistics() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: print statistics
PrintStatistics(PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Prints all results and some statistics to either file or screen
PrintStatistics(PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: print statistics to the output file
PrintStatistics(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Prints all results to a file.
PrintStatistics(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: print statistics
printSTLAscii(PrintWriter) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Print the STL file format in ASCII.
printSTLAscii(PrintWriter, int, int[][], Vector3f[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
printSTLAscii(PrintWriter, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Print the contents of the TriMesh in STL ascii format.
printSTLBinary(RandomAccessFile) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Print the STL file format in binary ( little endian ).
printSTLBinary(RandomAccessFile, int, int[][], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
PrintSumm(String, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
printsvHeader() - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
printsvHeader() - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2
printTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
printTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
printTable() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
printTarget(String, Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
printTotals(AlgorithmVOIProps.Calc34D.ContourStats[], VOIStatisticalProperties, String, String, String, float, float, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Sums the statistics for a group of contours, where the statistics are first calculated per-contour.
printTotals(Vector<AlgorithmVOIProps.Calc34D.ContourStats>, VOIStatisticalProperties, String, String, String, float, float, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Sums the statistics for a group of contours, where the statistics are first calculated per-contour.
printTotalsRGB(AlgorithmVOIProps.Calc34D.ContourStats[], VOIStatisticalProperties, String, String, String, float, float, float, float, float, float, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Sums the statistics for a group of contours, where the statistics are first calculated per-contour.
printTotalsRGB(Vector<AlgorithmVOIProps.Calc34D.ContourStats>, VOIStatisticalProperties, String, String, String, float, float, float, float, float, float, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Sums the statistics for a group of contours, where the statistics are first calculated per-contour.
printTree() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
printTree(TreeModel, Object) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
printTree(TreeModel, Object) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
printTree(TreeModel, Object) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
printUsage() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Prints the usage information to stdout.
printUsage() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Prints the usage information to stdout.
printUsage() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Prints the usage information to stdout.
printUsage() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Prints the usage information to stdout.
PrintUsage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Print usage
PrintUsage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: print console mode usage.
printUsageAndExit() - Static method in class gov.nih.mipav.view.ViewUserInterface: Displays command line help information on usage of all commands and then exits.
printUsageAndExit(Argument) - Static method in class gov.nih.mipav.view.ViewUserInterface: Displays command line help information on usage to standard out and then into an informational dialog box then exits the MIPAV application.
printVector(Vector<JDialogFemurTraceSectionsNetherland.TracingPoint>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
printVector(Vector<JDialogFemurTraceSectionsNIH.TracingPoint>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
printVector(Vector<JDialogFemurTraceSectionsSeparateNetherland.TracingPoint>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
printVector(Vector<JDialogPatellaTraceSectionsNetherland.TracingPoint>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
printVector(Vector<JDialogPatellaTraceSectionsNIH.TracingPoint>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
printVersionAndCopyright() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Prints version and copyright information to the logging facility returned by FacilityManager.getMsgLogger()
printVersionAndCopyright() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Prints version and copyright information to the logging facility returned by FacilityManager.getMsgLogger()
printVersionAndCopyright() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Prints version and copyright information to stdout, using the MsgPrinter.
printVersionAndCopyright() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Prints version and copyright information to stdout, using the MsgPrinter.
printVisitedMap(boolean[][], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
printVisitedMapOnBottom(boolean[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
printVisitedMapOnLeft(boolean[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
printVisitedMapOnRight(boolean[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern
printVisitedMapOnTop(boolean[][], int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical
printVolume(ModelImage, VOIVector, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Print out the three VOIs volume in system console out.
printVolume(ModelImage, VOIVector, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Print out the three VOIs volume in system console out.
printWeights(Backpropagation.Neuron) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
priority - Variable in class gov.nih.mipav.model.structures.TableSorter.Arrow: DOCUMENT ME!
PriorityQueue(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
PRIVATE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Indicates tag is a private tag
PRIVATE_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
PrivateDicomDictionary - Class in gov.nih.mipav.model.file: Note does not use hashtable since two Private keys can have same hashcode.
PrivateDicomDictionary() - Constructor for class gov.nih.mipav.model.file.PrivateDicomDictionary
privateDictionaryProcessed - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary
PrivateFileDicomKey - Class in gov.nih.mipav.model.file: Associates a FileDicomKey with a particular publisher to denote the source of the FileDicomKey.
PrivateFileDicomKey(int, int) - Constructor for class gov.nih.mipav.model.file.PrivateFileDicomKey
PrivateFileDicomKey(String) - Constructor for class gov.nih.mipav.model.file.PrivateFileDicomKey
PrivateFileDicomKey(String, int, int) - Constructor for class gov.nih.mipav.model.file.PrivateFileDicomKey
PrivateFileDicomKey(String, String) - Constructor for class gov.nih.mipav.model.file.PrivateFileDicomKey
privateKeySearch(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
privatePublisher - Variable in class gov.nih.mipav.model.file.FileDicom: Private tag for current publisher name
privateTagsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
privateTagsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
prn1lb(int, int, double[], double[], double[], int, RandomAccessFile, double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
prn2lb(int, double[], double, double[], int, RandomAccessFile, int, int, int, double, int, String[], int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
prn3lb(int, double[], double, String, int, int, RandomAccessFile, int, int, int, int, int, double, double, int, String, int, double, double, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
PRNFO(String, SIFT.VlFileMeta) - Method in class gov.nih.mipav.model.algorithms.SIFT
PRNSA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PRNTlevel - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
prob - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
prob - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
prob - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
prob - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
prob - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
prob - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
prob - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
prob_density_marks - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
prob_max - Variable in class gov.nih.mipav.model.algorithms.NL2sol
prob_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PROB_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
probA - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
probA - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
probability - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
probability - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
probability - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
probabilityHistogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
probB - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
probB - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
probDouble - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
probe - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
probe - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
probe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Probe reference.
probe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe's root transform group, which holds the red target sign, guide line, and the actual probe geometry shape.
Probe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: Probe
Probe(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe contructor.
Probe(Vector<double[]>, double, CeresSolver.ProbeResults) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientChecker
PROBE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
probeBehaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe mouse behavior branchgroup root.
probeCursor - Static variable in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
probeList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Probes list.
PROBEMOVE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: cursor probe nevigation mode.
probePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: JPanelProbe reference.
probePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
probePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dialog for loading and displaying probes.
probePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dialog for loading and displaying probes.
probePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
probeResetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Reset probe nevigation mode.
ProbeResults() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
probeRootBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the probe.
probeRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Branch group for all the probes.
probeRootParentTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Transform group for all the probes.
probeRotate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe mouse rotation behavior.
probeShapeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Parent of each light bulb.
probesRootBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Parent of all the light bulbs.
probeTargetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Control the tri-planar probe nevigation mode.
probeTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The current tranform positioning the probe in java3d space.
probeTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe translation behavior.
probeType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Initialize the probe type to default probe type.
probeZoom - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The probe zoom behavior.
probjxOld(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
problem - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
problem - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem
problem - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
problem - Variable in class gov.nih.mipav.model.algorithms.CVODES
Problem - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
Problem() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem
problem_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator
problem_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
problem_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest
problem_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
problem_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest
ProblemAddingParametersAndResidualsResultsInExpectedProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddParameterIgnoresDuplicateCalls() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddParameterWithDifferentSizesOnTheSameVariableDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualAddsDuplicatedParametersOnlyOnce() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualWithDifferentSizesOnTheSameVariableDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualWithDuplicateParametersDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualWithIncorrectNumberOfParameterBlocksDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualWithIncorrectSizesOfParameterBlockDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemAddResidualWithNullCostFunctionDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemCostFunctionsAreDeletedEvenWithRemovals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemGetCostFunctionForResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemGetLossFunctionForResidualBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemGetParameterization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemImpl() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
ProblemImpl(CeresSolver.ProblemOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
ProblemIsParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemIsParameterBlockConstantWithUnknownPtrDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProblemOptions
ProblemParameterBlockQueryTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemRemoveParameterBlockWithUnknownPtrDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemReusedCostFunctionsAreOnlyDeletedOnce() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemSetLocalParameterizationWithUnknownPtrDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemSetParameterBlockConstantWithUnknownPtrDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProblemSetParameterBlockVariableWithUnknownPtrDies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
probOld - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
probX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
probXj(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
probXjOld(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
probXOld - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
process - Variable in class gov.nih.mipav.model.structures.VOI: If true this flag indicates that the VOI should be included (applied) when processing the image.
process - Variable in class gov.nih.mipav.model.structures.VOIBase: If true this flag indicates that the shape should be included (applied) when processing the image.
process - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Process id used by the save AVI.
process - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Process id used by the save AVI.
process(MetadataExtractor.Metadata, InputStream) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
process(MetadataExtractor.Metadata, InputStream, Iterable<MetadataExtractor.JpegSegmentMetadataReader>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
process_APPn - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
process_COM - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
process_data - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
process_data_context_main(libjpeg.jpeg_decompress_struct, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
process_data_context_main(libjpeg.jpeg_decompress_struct, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
PROCESS_DATA_CONTEXT_MAIN - Static variable in class gov.nih.mipav.model.file.libjpeg
process_data_crank_post(libjpeg.jpeg_decompress_struct, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
process_data_crank_post(libjpeg.jpeg_decompress_struct, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
PROCESS_DATA_CRANK_POST - Static variable in class gov.nih.mipav.model.file.libjpeg
process_data_simple_main(libjpeg.jpeg_decompress_struct, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
process_data_simple_main(libjpeg.jpeg_decompress_struct, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg
PROCESS_DATA_SIMPLE_MAIN - Static variable in class gov.nih.mipav.model.file.libjpeg
process_file(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Read the base directory for images and vois png files.
process_frame(double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double[], double[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Procedure to compute the motion increment in one frame
PROCESS_PER_CONTOUR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Algorithm maintains separate statistics per contour
PROCESS_PER_SLICE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Algorithm sums all statistics from each contour on the same slice
PROCESS_PER_SLICE_AND_CONTOUR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Algorithm maintains separate statistics per contour and denotes the slice of each contour
PROCESS_PER_VOI - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Algorithm sums all statistics for the entire VOI
process_restart(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
process_restart_huff(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
processAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
processAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
processAppleRunTime(MetadataExtractor.AppleRunTimeMakernoteDirectory, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader: Process the BPLIST containing the RUN_TIME tag.
processAWTEvents(AWTEvent[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Processes an array of AWT events by calling processMouseEvent; or, if the user pressed ESC, disables certain behaviors.
processAWTEvents(AWTEvent[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Processes an array of AWT events by calling processMouseEvent; or, if the user pressed ESC, disables certain behaviors.
processBinary(MetadataExtractor.Directory, int, MetadataExtractor.RandomAccessReader, int, Boolean, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: intermediate processing buffer, same size with imgBuffer.
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: intermediate processing buffer, same size with imgBuffer.
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: intermediate processing buffer, same size with imgBuffer.
processBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: intermediate processing buffer, same size with imgBuffer.
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.GifReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest
processBytes(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PsdReaderTest
processBytes(String, Class<T>) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest
processCameraSettings(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory
ProcessChoiceListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener
processChunk(MetadataExtractor.Metadata, MetadataExtractor.PngChunk) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader
processCoordinatePoints(int[], int[], float[], float[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Process point info from the in stream line
processDataThreads - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess
processDefaultMouseDrag(MouseEvent, int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: processDefaultMouseDrag performs the mouseDrag operations when in DEFAULT mode.
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Process the dir, read image and corresponding VOI file names.
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Process directory, save the image names and voi names.
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Process the directory.
processDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
processDir(File, Vector<JDialogAAMClassification.ModelString>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Process dir, read AAM model and pivot images.
processDir(File, Vector<JDialogAAMClassificationExt.ModelString>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Process dir, read AAM model and pivot images.
processDir(File, Vector<JDialogAAMplusSVM.ModelString>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Processing the AAM dir with AAM model string and pivot sample image name.
processDir(String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Process directory.
processDir_100(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
processDir_100(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
processDir_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
processDir_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
processDir_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
processDir_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
processDir_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
processDir_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI
processDir_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12
processDir_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Traverse the each fold directory
processDir_folder(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
processDir_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
processDir_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
processDir_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
processDir_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
processDir_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
processDir_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
processDir_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
processDir_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
processDir_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
processDir_folder_5(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
processDir_folder_5(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
processDir_folder_knees(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
processDir_folder_last(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
processDir_folder_last(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
processDir_folder_last(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
processDir_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
processDir_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: HNN generates multi-scaled prediction output.
processDir_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: HNN generates multi-scaled prediction output.
processDir_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
processDir_folder_org_img(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
processDir_orientation(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Under each fold, traverse the orientation directories, i.e. axial, coronal, sagittal directories.
processDirLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
processDirLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
processDirLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
processDirLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
processDirSingleImage(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Process the dir, read image and corresponding VOI file names.
processDirSingleImage(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Process the dir, read image and corresponding VOI file names.
processDirSingleImage(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Process the dir, read image and corresponding VOI file names.
processDirSingleImage(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Process the dir, read image and corresponding VOI file names.
processDirSingleImage(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Process the dir, read image and corresponding VOI file names.
processDTI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Processes the Diffusion Tensor Image.
processDWI() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Calls AlgorithmDWI2DTI to create the diffusion tensor image.
processDWI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Calls AlgorithmDWI2DTI to create the diffusion tensor image.
processed - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
processedIndicies - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
processedIndicies - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
processFile(File) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
processFile(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkReaderTest
processFile(String) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngMetadataReaderTest
processFileMenu(String) - Method in class gov.nih.mipav.view.JFrameHistogram: Called when the FileMenu is activated.
ProcessFixedDepthNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
ProcessFixedDepthNodeAdjacentNodes(int, OctNode, int, OctNode, int, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processIfd(MetadataExtractor.TiffHandler, MetadataExtractor.RandomAccessReader, Set<Integer>, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader: Processes a TIFF IFD.
processImageData(int[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Processes image data from the defined image tag location.
processImageName(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Process image file.
processIndep - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: DOCUMENT ME!
processIndep - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
processIndep - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
processIndepBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
processIndepBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
processingData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Process AAM atlas directory.
processingData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Process AAM atlas directory.
processingData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Process AAM model directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Process the ending slice atlas directory.
processingEndSliceData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Process the ending slice atlas directory.
processJpegSegmentData(MetadataExtractor.Metadata, Iterable<MetadataExtractor.JpegSegmentMetadataReader>, MetadataExtractor.JpegSegmentData) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
processJson(String, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI
processKodakMakernote(MetadataExtractor.KodakMakernoteDirectory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
processLeftMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: Dragging the mouse with the left-mouse button held down changes the positions of the X and Y cross bars, and therefor the ZSlice positions of the associated PlaneRender objects and the TriPlanar Surface.
processLeftMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Dragging the mouse with the left-mouse button held down changes the positions of the X and Y cross bars, and therefore the ZSlice positions of the associated PlaneRenderWM objects and the TriPlanar Surface.
processLeftMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Dragging the mouse with the left-mouse button held down changes the positions of the X and Y cross bars, and therefore the ZSlice positions of the associated PlaneRenderWM objects and the TriPlanar Surface.
processLeftMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
processList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
processList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
processList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
processList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: List of VOI sets that will have statistics calculated
processListIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Current set of VOIs that are being processed
processMainDirectory(File, File) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: opens top-level image directory. anonymizes the images in the top directory, when the class has been set to dig in recursively, anonymizes the top directories and calls openSubDirectory(...) to anonymize the files below.
processMakernote(int, Set<Integer>, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
ProcessMaxDepthNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
ProcessMaxDepthNodeAdjacentNodes(int, OctNode, int, OctNode, int, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram
processMode - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
processMouse(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: handles the toggling function of the grid (on/off)
processMouseDrag(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget
processMouseDrag(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
processMouseDrag(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget
processMouseDrag(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehavior: Processes the mouse event, setting yaw, pitch, roll, and velocity depending on mouse button and position.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.FlyBehaviorRenderer: Processes the mouse event, setting yaw, pitch, roll, and velocity depending on mouse button and position.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseRotateExt: DOCUMENT ME!
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Process the mouse event.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Process the mouse event.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.PointerBehaviorRenderer: Processes mouse event.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: Handles mouse events.
processMouseEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
processMousePress(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Process mouse prese when adding annotation point
processMouseReleased(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called when the left mouse button is released, indicating that the sculpt outline is complete, or when the outline is being drawn and the mouse is fragged outside the canvas area.
processMouseReleased(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Called when the left mouse button is released, indicating that the sculpt outline is complete, or when the outline is being drawn and the mouse is dragged outside the canvas area.
processMouseReleased(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: When a mouse button is released, the application is finishing a drag operation to rotate the virtual track ball.
processNextPatch(libdt.PatchExtractor) - Method in class gov.nih.mipav.model.algorithms.libdt
processNextTag(FileDicomTagTable, FileDicomKey, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileDicom
ProcessNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
ProcessNodeAdjacentNodes(int, OctNode, int, OctNode, int, NodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processNodeCorners(OctNode, NodeAdjacencyFunction, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processNodeEdges(OctNode, NodeAdjacencyFunction, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processNodeFaces(OctNode, NodeAdjacencyFunction, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processNodeNodes(OctNode, NodeAdjacencyFunction, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processor - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker: Video processor reference.
processorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
processors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
processors - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
processPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
ProcessPointAdjacentNodes(int, int[], OctNode, int, PointAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
ProcessPointAdjacentNodes(int, int, int, OctNode, int, int, PointAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processPrintIM(MetadataExtractor.PrintIMDirectory, int, MetadataExtractor.RandomAccessReader, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler: Process PrintIM IFD Converted from Exiftool version 10.33 created by Phil Harvey http://www.sno.phy.queensu.ca/~phil/exiftool/ lib\Image\ExifTool\PrintIM.pm
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRRBresenham: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityMIP: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityMIP: Process a ray that has intersected the oriented bounding box of the 3D image.
processRay(Point3f, Point3f, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Process a ray that has intersected the oriented bounding box of the 3D image.
processRaySlower(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityMIP: Process a ray that has intersected the oriented bounding box of the 3D image.
processReconyxHyperFire2Makernote(MetadataExtractor.ReconyxHyperFire2MakernoteDirectory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
processReconyxHyperFireMakernote(MetadataExtractor.ReconyxHyperFireMakernoteDirectory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
processReconyxUltraFireMakernote(MetadataExtractor.ReconyxUltraFireMakernoteDirectory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler
processRegionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
processRegionIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
processRegionIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
processRestart(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Check for a restart marker & resynchronize decoder.
processRightMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender: If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
processRightMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
processRightMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
processRightMouseDrag(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
processSequence(FileDicomTagTable, FileDicomKey, String, boolean) - Method in class gov.nih.mipav.model.file.FileDicom
processSlice(File) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
processSpaceNavEvent() - Method in interface gov.nih.mipav.view.input.spacenav.SpaceNavigatorListener: Processes a polled event from the space navigator
processSpaceNavEvent() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
processSpaceNavEvent(SpaceNavigatorEvent) - Method in interface gov.nih.mipav.view.input.spacenav.SpaceNavigatorListener
processSpaceNavEvent(SpaceNavigatorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
processStatus - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Implementation of the Behavior abstract method.
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Required to be a ViewPlatformBehavior.
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Required to be a ViewPlatformBehavior.
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: All mouse manipulators must implement this.
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: DOCUMENT ME!
processStimulus(Enumeration) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: DOCUMENT ME!
processSubDirectory(File, File) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: traverses the directory, anonymizing as it goes. the child directories are named after the source child-directory, and attempted to traverse (by calling processSubDirectory(File dest, File src)).
processTables(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG: Process the header markers.
processTag(MetadataExtractor.SequentialReader, MetadataExtractor.Directory, int, int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader
processTag(MetadataExtractor.TiffHandler, int, int, int, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader
ProcessTerminatingNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, TerminatingNodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
ProcessTerminatingNodeAdjacentNodes(int, OctNode, int, OctNode, int, TerminatingNodeAdjacencyFunction, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
processTiff(MetadataExtractor.RandomAccessReader, MetadataExtractor.TiffHandler, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader: Processes a TIFF data sequence.
processTransferSyntax(String) - Method in class gov.nih.mipav.model.file.FileDicom
processType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: How the VOI calculations should be performed (entire, contour, slice).
processType - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: DOCUMENT ME!
processUnknownVR(FileDicomTagTable, String, FileDicomKey, int, String) - Method in class gov.nih.mipav.model.file.FileDicom
processUtilitiesMenu(ActionEvent, String) - Method in class gov.nih.mipav.view.JFrameHistogram: Called when the Utilities Menu is activated.
processVideoTesting(libdt.Dytex, libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
processVideoTraining(libdt.Dytex, libdt.Mat, libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
procPixel(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: process pixel at pixel pix using data from the srcBuffer. builds a list of monochromatic image values of the neighboring pixels image values (using a map generated by the kernelMask), builds the histogram of those values, clamps when necessary, then scales the cumulative histogram, getting the brightness back out.
procs_recv_from_list - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
procs_to_send_list - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
prod2(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet
produceProbaImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
product - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
PRODUCT - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
ProductParameterization(CeresSolver.LocalParameterization, CeresSolver.LocalParameterization) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
ProductParameterization(CeresSolver.LocalParameterization, CeresSolver.LocalParameterization, CeresSolver.LocalParameterization) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
ProductParameterization(CeresSolver.LocalParameterization, CeresSolver.LocalParameterization, CeresSolver.LocalParameterization, CeresSolver.LocalParameterization) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
ProductParameterizationTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestComputeJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestComputeJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProductParameterizationTestLocalAndGlobalSize2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestLocalAndGlobalSize2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProductParameterizationTestLocalAndGlobalSize3() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestLocalAndGlobalSize3() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProductParameterizationTestLocalAndGlobalSize4() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestLocalAndGlobalSize4() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProductParameterizationTestPlus() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest
ProductParameterizationTestPlus() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
profile - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
PROFILE_EMBEDDED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType: "MBED" = Embedded Profile
PROFILE_LINKED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType: "LINK" = Linked Profile
profiles - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: List of existing default profiles for this dialog
progorder - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Progression order string - 5 characters
program - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
program() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
Program() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Program
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseJacobianWriter
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DynamicCompressedRowJacobianWriter
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
program_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.StateUpdatingCallback
programAuthor - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
ProgramCreateJacobianBlockSparsityTranspose() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
programDate - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
ProgramEvaluator(JacobianWriter, CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
ProgramInfeasibleConstantParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramInfeasibleParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
programName - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
ProgramProblemHasNanParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramReallocationInCreateJacobianBlockSparsityTranspose() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksAllParameterBlocksConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksFixedCost() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksNoResidualBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksNothingConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksNumEliminateBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ProgramRemoveFixedBlocksOneParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
programVersion - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
progress - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Store the progress being made.
progress - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
progress - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
progress - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
progress - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
PROGRESS - Static variable in class gov.nih.mipav.view.DICOMDisplayer: A progress type message is the image number that is saved.
progress_monitor - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
progress_monitor(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
PROGRESS_VALUE_UNCHANGED - Static variable in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
PROGRESS_WINDOW_CLOSING - Static variable in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
progressBar - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.file.FileDicomBase: Progress bar to show when reading in image file.
progressBar - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.file.FileJP2
progressBar - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Progress bar that will listen to a dialog's algorithm (and reflect current progress)
progressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Progress bar.
progressBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Progress bar object.
progressBar - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Progress bar that will listen to a dialog's algorithm (and reflect current progress)
progressBar - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
progressBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: currently running.
progressBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: currently running.
progressBar - Variable in class gov.nih.mipav.view.ViewJFrameBase: Reference to progress bar.
ProgressBarInterface - Interface in gov.nih.mipav.view: Title: ProgressBarInterface
progressBarLocation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Progress bar default location.
progressBarPrefix - Variable in class gov.nih.mipav.view.ViewUserInterface: The current progress bar prefix to use.
progressBegin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Where progress is when sent in.
progressBegin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Where progress is when sent in.
ProgressChangeEvent - Class in gov.nih.mipav.view: ProgressChangeEvent is used to notify interested parties that progress state has changed in the event source
ProgressChangeEvent(Object, int, String, String) - Constructor for class gov.nih.mipav.view.ProgressChangeEvent: The only constructor to create an instance of this ProgressChangeEvent
ProgressChangeListener - Interface in gov.nih.mipav.view: Defines an object which listens for the ProgressChangeEvent.
progressive_mode - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
progressMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The max the progress can go to.
progressMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The max the progress can go to.
progressMode - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Progress mode - either standard, no cancel, or no progress bar.
progressModulus - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase
progressStateChanged(ProgressChangeEvent) - Method in interface gov.nih.mipav.view.ProgressChangeListener: Invoked when the target of the listener has changed its state
progressStateChanged(ProgressChangeEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar: Implementation of the ProgressChangeListener interface.
progressStateChanged(ProgressChangeEvent) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Handle any progress changes by updating the correct progress bar attached to the throwing algorithm
progressStep - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase
progressValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
proj - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
proj_alg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 596 Projection Algorithm.
proj_name - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 598 13 characters Projection Algorithm Name.
proj_sparse_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PROJ_SPARSE_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
project() - Method in class gov.nih.mipav.model.algorithms.LSCM
Project(String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Project: Creates a new Project object.
Project(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Projects an observation into the PCA space.
projectAngle - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 498 Projection Angle.
projected_gradient_step_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
projectID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Project
projectID - Variable in class gov.nih.mipav.model.file.FileInfoOME.ProjectRef
projection - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: When true output the X,Y,Z projections.
projection_mnls(Matrix, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
projection_precon_mnls(Matrix, Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
projectionAngle - Variable in class gov.nih.mipav.model.file.FileGESigna4X
projectionAngle - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
projectionDataAlreadyOnCBR - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
projectionDirection - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Default Projection is along the z-Axis.
projectionNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
projectionTime - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
projectionUSize - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
projectionVSize - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
projective_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
PROJECTIVE_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ProjectRef(Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.ProjectRef: Creates a new ProjectRef object.
projectRefs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset: DOCUMENT ME!
projects - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
ProjectTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
projfunc(int[], double[], double, double, boolean) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
projgr(int, double[], double[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
projnorm - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
projnorm - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt
ProjPointOnLine(double, double, double, double, double, double, double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Find the projection dProj of the point dP on the line through dL1 and dL2.
promenance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate the cluster promenance Sum over i,j of ((i + j - x mean - y mean)**4) * Probability(i,j) For the symmetrical glcm x mean = y mean = glcm mean Sum over i,j of ((i + j - 2 * glcm mean)**4) * Probability(i,j)
promenance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate the cluster promenance Sum over i,j of ((i + j - x mean - y mean)**4) * Probability(i,j) For the symmetrical glcm x mean = y mean = glcm mean Sum over i,j of ((i + j - 2 * glcm mean)**4) * Probability(i,j)
promenance - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
promenance - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
promenanceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
promenanceCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
PROMOTE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
PROMOTE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
PROMOTE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
promoteType(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
promoteType(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
promoteType(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
PROP_ALL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Propagate the source VOI to slices above and below its current slice.
PROP_ALL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Propagate the source VOI to slices above and below its current slice.
PROP_NEXT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Propagate the source VOI to slices above its current slice in the volume.
PROP_NEXT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Propagate the source VOI to slices above its current slice in the volume.
PROP_PREV - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Propagate the source VOI to slices below its current slice in the volume.
PROP_PREV - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Propagate the source VOI to slices below its current slice in the volume.
PROP_SINGLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Do not propagate the source VOI to any slices (2D).
PROP_SINGLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Do not propagate the VOI to any slices (2D).
PROP_THRESHOLD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: The maximum ratio of change in the energy under the VOI after propagation.
PROP_THRESHOLD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: The maximum ratio of change in the energy under the VOI after propagation.
propagate - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
propagate - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
propagate - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
propagate - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
propagate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
propagate(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
propagateAll() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: propagate to all slices.
propagateDown() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: propagate to the next slice.
propagatePaintToAllSlices() - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
propagatePaintToNextSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
propagatePaintToPreviousSlice() - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
propagateUp() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: propagate to the next slice.
propagateVOI(VOIBase, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from VOIManagerInterface.
propagation() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
propagationFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: If true propagate the contour to an adjacent slice.
propagationFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: If true propagate the contour to an adjacent slice.
propagationFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
propagationFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
propagationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: The VOI propagation mode to use.
propagationType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: The VOI propagation mode to use.
propagationType - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
propagationType - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
propDown(VOIContour, VOI, float, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake
propDown(VOIContour, VOI, float, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
PropDown(int) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
PropDown(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
PropDown(int) - Method in class gov.nih.mipav.view.ViewJFrameImage
PropDown(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
PropDown(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
PropDown(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
properties - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Properties per track
PROPERTIES - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback: DOCUMENT ME!
propertiesDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
PropertiesDialog(JDialogHyperGraph, MipavGraphPanel, boolean) - Constructor for class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
propertyChange(PropertyChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: This method gets called when a bound property is changed.
propertyChange(PropertyChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
propertyChange(PropertyChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
propertyChangeInSelectA() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Here to allow subclasses to select the action to occur when a property change occurs in the select A panel.
propertyChangeInSelectB() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Here to allow subclasses to select the action to occur when a property change occurs in the select B panel.
propertyChangeInSelectB() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Here to allow subclasses to select the action to occur when a property change occurs in the select B panel.
propertyLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: When a tag value exists, this label displays the text "Tag value:"
propertyList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Vector to hold all properties calculated within the algorithm for later access.
PropertyListResults(List<Object>, MetadataExtractor.BplistReader.Trailer) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults
propertyName - Variable in class gov.nih.mipav.view.JPanelEdit: A changable property name for firing PropertyChangeEvents.
PropertyUpdate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
propertyValue - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
propertyValueSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Name and property labels that describe a DICOM tag for a particular file
propNames - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Scalar names and property names
proposedAbstractSyntaxs - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: A hash table of proposed abstract syntaxes where: value = AbstractSyntaxes; key = UID.
propPane - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: When a tag value exists, this panel displays the value
propSubMenu - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
propSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
propSubMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
propUp(VOIContour, VOI, float, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake
propUp(VOIContour, VOI, float, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
PropUp(int) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
PropUp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
PropUp(int) - Method in class gov.nih.mipav.view.ViewJFrameImage
PropUp(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
PropUp(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
PropUp(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
propVOI(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
propVOI(int, boolean) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Deprecated.
propVOIAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
propVOIAll() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Deprecated.
prostateAAMClassification - Variable in class gov.nih.mipav.view.ViewJFrameImage
prostateML - Variable in class gov.nih.mipav.view.ViewJFrameImage
prostateSemiAutoBSpline() - Method in class gov.nih.mipav.view.ViewJFrameImage
prostateSemiAutoBSplineFuzzyC() - Method in class gov.nih.mipav.view.ViewJFrameImage
protocol - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta: < File name pattern
protocol - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
protocolField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
protocolFlag - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 332 Non-zero indicates protocol exam.
protocolName - Variable in class gov.nih.mipav.model.file.FileInfoPARREC: par/rec protocolName
protocolName - Variable in class gov.nih.mipav.model.file.FilePARREC: protocol name
protocolVersion - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Protocol version identifier.
PROTOCOLVERSION - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants: DICOM Protocol Version - Default = 1.
PROTRACTOR - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type PROTRACTOR used to measure angles.
PROTRACTOR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
PROTRACTOR - Static variable in class gov.nih.mipav.view.ViewJComponentBase: This mode is an active VOI mode used by the VOI Handler
protractorAnnotations(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI: Creates the protractor annotations.
protractorCommonVertexButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
ProvenanceChangeEvent - Class in gov.nih.mipav.model.provenance: Provenance Change event for listeners to update (jtable provenance viewing)
ProvenanceChangeEvent(Object, ProvenanceEntry) - Constructor for class gov.nih.mipav.model.provenance.ProvenanceChangeEvent: default constructor
ProvenanceChangeListener - Interface in gov.nih.mipav.model.provenance: Used by JDialogDataProvenance to display changes in the provenanceholder (when entries are added)
provenanceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
ProvenanceEntry - Class in gov.nih.mipav.model.provenance
ProvenanceEntry() - Constructor for class gov.nih.mipav.model.provenance.ProvenanceEntry
ProvenanceEntry(String) - Constructor for class gov.nih.mipav.model.provenance.ProvenanceEntry: Constructor created when an action happens
provenanceFileButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
provenanceFilename - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
provenanceHolder - Variable in class gov.nih.mipav.model.structures.ModelImage: Holds the data provenance (image history) The transient keyword is used to indicate that the provenanceHolder should not be cloned when the image is cloned.
ProvenanceHolder - Class in gov.nih.mipav.model.provenance: Class that stores matrices (owned by ModelImage) with accessor functions to the matrix map/adding and changing matrices.
ProvenanceHolder() - Constructor for class gov.nih.mipav.model.provenance.ProvenanceHolder: Default constructor.
provenanceImageCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
ProvenanceRecorder - Class in gov.nih.mipav.model.provenance: Singleton class modelled after ScriptRecorder that is turned on when Mipav starts if DATA_PROVENANCE boolean is set to true in preferences (set through Mipav-Options) Records data provenance line by line (after running algorithms or doing other important actions (Change name) etc images are placed in registers (similar to the script recorder) but there are also Vectors of input and output images so that the data provenance is placed into the correct place(s)
ProvenanceRecorder() - Constructor for class gov.nih.mipav.model.provenance.ProvenanceRecorder: Creates a new ProvenanceRecorder object.
provenanceStateChanged(ProvenanceChangeEvent) - Method in interface gov.nih.mipav.model.provenance.ProvenanceChangeListener
provenanceStateChanged(ProvenanceChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Update the dialog with the new provenance entry
ProvenanceXMLHandler(ProvenanceHolder) - Constructor for class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: Default constructor
providedOutputDir - Static variable in class gov.nih.mipav.view.ViewUserInterface: This boolean tells if the user has provided an ouputDir parameter as a command line argument when running a script
providedUserDefaultDir - Static variable in class gov.nih.mipav.view.ViewUserInterface: This boolean tells if the user has provided an inputDir parameter as a command line argument when running a script
proxy - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
prprel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
prSysID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 50 - 9 bytes - Primary Receiver Suite and Host.
prune() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
prune(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
prune(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: This method is to be applied on skeletonized images: it removes all branches which are iter or less pixels in length.
prune(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: This method is to be applied on skeletonized images: it removes all branches which are iter or less pixels in length.
prune(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: This method is to be applied on skeletonized images: it removes all branches which are iter or less pixels in length.
pruneAuto(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: This method is to be applied on skeletonized images: it skeletonized each branches into a point.
prunedmodes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
prunedModesImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
prunedModesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
PruneGraph(METIS.ctrl_t, int, int[], int[], int[], int[], float) - Method in class gov.nih.mipav.model.structures.jama.METIS
pruneModes(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
pruneSeeds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Vector that hold the prune seeding pixels.
pry - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
pS - Variable in class gov.nih.mipav.view.ColorWheel: sat vs theta
pS - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: saturation vs theta *
pS - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: saturation vs theta *
pS - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: sat vs theta *
ps_flag - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 580 Auto/Manual Prescan flag.
ps_status - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 582 Bitmap of changed values.
Psd - gov.nih.mipav.model.file.MetadataExtractor.FileType
PSD - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .psd.
psd_dateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 342 PSD Creation Date and Time.
psd_iname - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 346 13 characters.
psdDay - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdDay - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psdFileName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdFileName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
PsdHeaderDescriptor(MetadataExtractor.PsdHeaderDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDescriptor
PsdHeaderDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory
psdHour - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdHour - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psdMinute - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdMinute - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psdMonth - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdMonth - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psdName - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
PsdReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.PsdReader
PsdReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.PsdReaderTest
psdSeconds - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdSeconds - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psdYear - Variable in class gov.nih.mipav.model.file.FileGESigna4X
psdYear - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
pSeq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 304 Pulse sequence.
pseries(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
pSeries2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pSeries2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
psetDesc - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
PSetDisplay(String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Creates a parameter set display with the given description that will be used as the key.
pSetsHashMap - Variable in class gov.nih.mipav.model.file.FileWriteOptions
PseudoInv(CDMatrix, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Calculates the pseudo inverse of a matrix.
PseudoPolarFourierTransform - Class in gov.nih.mipav.model.algorithms.filters
PseudoPolarFourierTransform() - Constructor for class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
PseudoPolarFourierTransform.indexValueComparator - Class in gov.nih.mipav.model.algorithms.filters
PseudoPolarFourierTransform.indexValueItem - Class in gov.nih.mipav.model.algorithms.filters
psfFFT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfIFFT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfImageSpectrum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfSpectrumImags - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psfSpectrumReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
psi - Variable in class gov.nih.mipav.model.algorithms.ODE
psi - Variable in class gov.nih.mipav.model.algorithms.ODEEP
psi(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
psi(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
Psi - Class in gov.nih.mipav.model.algorithms: This code calculates the psi function of an input argument x.
Psi() - Constructor for class gov.nih.mipav.model.algorithms.Psi
Psi(double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Psi
Psi(double, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Psi
PSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
psi_data(double[], double[], double[], double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the coefficients of the robust functional (data term)
psi_data(double[], double[], double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the coefficients of the robust functional (data term)
psi_divergence(double[], double[], double[], double[], double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the coefficients of the divergence term
psi_divergence(double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the coefficients of the divergence term
psi_gradient(double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the coefficients of the robust functional (gradient term)
psi_gradient(double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the coefficients of the robust functional (gradient term)
psi_smooth(double[], double[], double[], double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the coefficients of the robust functional (smoothness term)
psi_smooth(double[], double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the coefficients of the robust functional (smoothness term)
Psij - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
psiLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
psiLattice - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
psnr() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
psnr_b - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
psnrb() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
pSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
pstdnorm(double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
pt - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity: Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.
pt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
pt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry
pt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
pt - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian: temp point storage.
pt - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian: temp point storage.
pt - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
pt - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
pt - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.poly
pt() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.pt
Pt - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Shift by this when putting into int buffer.
PT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PT1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
pTable - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
ptArray - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
ptCoord - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
ptCoord - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Temporary buffer used when extracting points from a VOI.
pText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
PTFUN1(int, double[][], double[], int, String[], int, String, String, String, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PTFUN2(int, double[][], double[], int, String[], int, String[], int, String, String, String, boolean, String, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ptHessian2D() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
ptHessian3D() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
ptIDText - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
ptNameText - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
PToIP(Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
PtP(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
PtP3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
PtP3_ref(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ptPopup - Variable in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
ptr - Variable in class gov.nih.mipav.model.structures.HQueue: DOCUMENT ME!
ptr - Variable in class gov.nih.mipav.model.structures.IntVector: The index of the last valid data element in the vector.
ptr - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mop_t
ptr - Variable in class gov.nih.mipav.model.structures.PointStack: DOCUMENT ME!
PTR_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Pointer viewing mode.
ptrButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Point behavior button.
ptrCmprsnHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 72 - pointer to.
ptrDBHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 104 - pointer to.
ptrExamHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 132 - pointer to.
ptrGraphics - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 96 - pointer to.
ptrHistoHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 80 - pointer to.
ptrImage - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 4 - byte displacement to pixel data.
ptrImageHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 148 - pointer to.
ptrSeriesHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 140 - pointer to.
ptrSuiteHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 124 - pointer to.
ptrTextPlane - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 88 - pointer to.
ptrUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 56 - pointer to unique image identifier (UID).
ptrUnpackHdr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 64 - pointer to.
ptrUsrDefData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 116 - pointer to.
pts - Variable in class gov.nih.mipav.model.algorithms.Integration2: Integration limits and the break points of the interval in ascending sequence.
pts - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Integration limits and the break points of the interval in ascending sequence.
pts - Variable in class gov.nih.mipav.model.structures.TransferFunction: The array of 2D points that define the line.
Pts - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo
pttemp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
pttemp - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
PTX - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
pub - Variable in class gov.nih.mipav.model.file.libjpeg.d_derived_tbl
PUBLIC_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
publicTagsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
publicTagsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
publisher - Variable in class gov.nih.mipav.model.file.PrivateFileDicomKey: The publisher for this tag.
PUBLISHER - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary
pulse - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser
pulseRepTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 194 pulse repetition time (usec).
pulseSeqMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 306.
pulseSeqName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 308 33 characters.
pulseSequence - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pulseSequence - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pulseSequenceMode - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pulseSequenceMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pulseSequenceSubtype - Variable in class gov.nih.mipav.model.file.FileGESigna4X
pulseSequenceSubtype - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
pump - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser: elements.
Pump(Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser.Pump: Creates a new Pump object.
PURE_1D - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
PURE_1D - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
purity - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
purple - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
purpleColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
Purpose() - Constructor for enum gov.nih.mipav.view.GetPath.Purpose
push(int) - Method in class gov.nih.mipav.model.structures.IntVector: Pushes a new value onto the array.
push(DICOM_VR) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object: Adds DICOM_VR to this list (object).
push_back(AlgorithmMeanShiftClustering.famsPoint) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont
pushAppleMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushCanonMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushCasioType1MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushCasioType2MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushDirectory(Class<? extends MetadataExtractor.Directory>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushErrorDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushExifIFD0Directory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushExifImageDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushExifInteropDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushExifThumbnailDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushFujifilmMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushGpsDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushKyoceraMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushLeicaMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushLeicaType5MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushNikonType1MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushNikonType2MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusCameraSettingsMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusEquipmentMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusFocusInfoMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusImageProcessingMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusRawDevelopment2MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusRawDevelopmentMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushOlympusRawInfoMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushPanasonicMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushPanasonicRawIFD0Directory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushPentaxMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushRicohMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSamsungType2MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSanyoMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSigmaMakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSonyType1MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSonyType6MakernoteDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
pushSubExifIFDDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler
put(FileDicomTag) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Adds a tag to the tag table, overwriting if a value is already in the table under this tag's key.
put(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Add a parameter to a table.
put(String, Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Add a parameter to the table.
Put(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue
PutColumn(double[], int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
putdata(int, int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
putInFrame - Variable in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
putInQuicklist - Variable in class gov.nih.mipav.model.file.FileWriteOptions: Tells FileIO whether or not to insert the saved image into the Quicklist (recently used image list) after successful saving
putPrivateTagInfo(FileDicomTagTable, FileDicomKey, boolean) - Method in class gov.nih.mipav.model.file.FileDicom
putPrivateTagValue(FileDicomTagInfo) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Adds a private tag to the tag table using some dicom info.
PutRow(double[], int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
PutVertical(double[], int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
pvalue - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
pValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
PValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
PValue - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: statistic giving the portion of images generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
pvec1 - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
pvec2 - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
pVertex - Variable in class gov.nih.mipav.model.algorithms.LSCM.Mesh
pw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_resolution_t
pw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
PW_qis2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
PW_qis2 - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
pwAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: DOCUMENT ME!
pwgts - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
pwt(float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
PWT - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
PWT - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgIterator
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
px - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
Px - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Joint probability table
PXM_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
pxmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
pxmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
pymax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
pymin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
pyramid - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
Pyramid() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid
pyramid_filter() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
pyramidLevels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: pyramidLevels is only used with gain correction.
pyramidLevels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: pyramidLevels is only used with gain correction.
pyramidLevels - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: pyramidLevels is only used with gain correction.
PyramidToolbox - Class in gov.nih.mipav.model.algorithms
PyramidToolbox() - Constructor for class gov.nih.mipav.model.algorithms.PyramidToolbox
PYTHAG(double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
PyWavelets - Class in gov.nih.mipav.model.algorithms.filters: Copyright (c) 2006-2012 Filip Wasilewski Copyright (c) 2012-2017 The PyWavelets Developers Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
PyWavelets() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets
PyWavelets(ModelImage, double[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets
PyWavelets(ModelImage, ModelImage, int, PyWavelets.WAVELET_NAME[], int[], PyWavelets.MODE[], int[], int[], double[], double[], boolean, boolean, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets
PyWavelets.ArrayInfo - Class in gov.nih.mipav.model.algorithms.filters
PyWavelets.BaseWavelet - Class in gov.nih.mipav.model.algorithms.filters
PyWavelets.Coefficient - Enum in gov.nih.mipav.model.algorithms.filters
PyWavelets.ContinuousWavelet - Class in gov.nih.mipav.model.algorithms.filters
PyWavelets.DiscreteTransformType - Enum in gov.nih.mipav.model.algorithms.filters
PyWavelets.DiscreteWavelet - Class in gov.nih.mipav.model.algorithms.filters
PyWavelets.MODE - Enum in gov.nih.mipav.model.algorithms.filters
PyWavelets.SYMMETRY - Enum in gov.nih.mipav.model.algorithms.filters
PyWavelets.WAVELET_NAME - Enum in gov.nih.mipav.model.algorithms.filters
PZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes

Q

q - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
q - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
q - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
q - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
q - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
Q - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Q - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson: preference-decreasing ordered set of nice increments
Q - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < observation noise covariance
Q - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
Q - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
Q - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
Q - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
Q - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
Q() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
Q_8x8 - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
q_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
Q_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
q_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverPerSolveOptions
Q0 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Q01_POS - Variable in class gov.nih.mipav.model.file.libjpeg
Q02_POS - Variable in class gov.nih.mipav.model.file.libjpeg
Q1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Q10_POS - Variable in class gov.nih.mipav.model.file.libjpeg
Q11_POS - Variable in class gov.nih.mipav.model.file.libjpeg
Q2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
Q20_POS - Variable in class gov.nih.mipav.model.file.libjpeg
q2dcm(double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qapply(int, int, int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.NL2sol
qaws(double, double, int, double, double, int, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.SymmsIntegralMapping.qaws
qbdd_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
QCOMW - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
QCOMX - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
qcond_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
qconj(double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qcvq(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
QD - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
QD - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
QD - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
QD - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
QD - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
QD - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
QD - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
QD - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
qdat - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
qdata - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
qdecomp(double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qdum1_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
qdum2_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
QELLPE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
QELLPK - Static variable in class gov.nih.mipav.model.algorithms.Cephes
qeval - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_state_t: the probability of the Least Probable Symbol (0.75->0x8000, 1.5->0xffff)
qf - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
qfac - Variable in class gov.nih.mipav.model.file.FileNIFTI: The scaling factor qfac is either 1 or -1.
QFORM(int, int, double[][], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
qform_code - Variable in class gov.nih.mipav.model.file.FileNIFTI: When qform_code > 0 the (x,y,z) coordinates are given by: [ x ] [ R11 R12 R13 ] [ pixdim[1] * i ] [ qoffset_x ] [ y ] = [ R21 R22 R23 ] [ pixdim[2] * j ] + [ qoffset_y ] [ z ] [ R31 R32 R33 ] [ qfac * pixdim[3] * k ] [ qoffset_z ] where the R rotation parameters are calculated from the quaternion parameters.
Qg() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The texture part of the combined PCA eigenvectors.
QGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
qgraph - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
qincr_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
QINIT(int, int, double[], double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
QKSort2(float[]) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
QLag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
qledge - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
qlgraph() - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
qlim_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
qlvert - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
QMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
QMatrix() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.QMatrix
QMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.QMatrix
qMesh - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Quad mesh.
qmfbid - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: discrete wavelet transform identifier
qmfbid - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: discrete wavelet transform identifier
qMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
qMinrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
qmult(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qnorm(double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qntsty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: quantisation style
qntsty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: quantisation style
qoffset_x - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion x shift
qoffset_y - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion y shift
qoffset_z - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion z shift
Qopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
qr_a - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
qr_b - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
qr_enable - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
qr_r - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
QRFAC(int, int, double[][], int, boolean, int[], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
qrfact(int, int, int, double[][], double[], int[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
QRHSFUNC_RECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES
qrzero_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
Qs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: The shape part of the combined PCA eigenvectors.
qsort(int[], int, int, Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil
qsort(Covdet.VlCovDetFeatureOrientation[], int) - Method in class gov.nih.mipav.model.algorithms.Covdet
qsort(Object[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort: This is a generic version of C.A.R Hoare's Quick Sort algorithm.
qsort(Object[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort: This is a generic version of C.A.R Hoare's Quick Sort algorithm.
qsort(Object[], int, int, Comparator) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort
qsort(Object[], int, int, Comparator) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort
qsort(Object[], int, int, Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: Quick sorts the supplied array using the specified comparator.
qsort(Object[], Comparator) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil: Quick sorts the supplied array using the specified comparator.
qsort_recursive(Covdet.VlCovDetFeatureOrientation[], int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet
QSORT_STACK_SIZE - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream
qsort_swap(Covdet.VlCovDetFeatureOrientation[], int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet
qSort3(int, int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
QSRHSFUNC_RECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES
qt - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
qt - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
qt - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
qt - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
QT - Static variable in class gov.nih.mipav.model.file.FileUtility: Quicktime file type. extension: .mov, .qt
qtf - Variable in class gov.nih.mipav.model.algorithms.Lmmin: qtf is an OUTPUT array of length n which contains the first n elements of the vector (q transpose)*fvec.
qts - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
qts - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
QUAD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: DOCUMENT ME!
quad_roots(double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
quadImagePanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
quadImagePanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
quadrant - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
QUADRATIC - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
QuadraticCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticCostFunction
QuadraticFirstOrderFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFirstOrderFunction
QuadraticFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticFunction
QuadraticTestFunction(boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.QuadraticTestFunction
Quadric() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
Quadric(double, double, double, double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
Quadric(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
Quadric(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
quality - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
quality - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: DOCUMENT ME!
qualityField - Variable in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Text Field for M-JPEG quality.
qualityField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
qualityField - Variable in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Text Field for M-JPEG quality.
qualityLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
qualityLayers - Variable in class gov.nih.mipav.model.file.FileJPEG2000
quamin(double, double, double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
quamin(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
quant_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
quant_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
quant_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
quantificationUnits - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
quantityDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
quantize(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
quantize_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
quantize_fs_dither(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
quantize_fs_dither(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
QUANTIZE_FS_DITHER - Static variable in class gov.nih.mipav.model.file.libjpeg
quantize_ord_dither(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
quantize_ord_dither(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
QUANTIZE_ORD_DITHER - Static variable in class gov.nih.mipav.model.file.libjpeg
quantize3_ord_dither(libjpeg.jpeg_decompress_struct, byte[][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
quantize3_ord_dither(libjpeg.jpeg_decompress_struct, short[][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
QUANTIZE3_ORD_DITHER - Static variable in class gov.nih.mipav.model.file.libjpeg
quantizer_1pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
quantizer_2pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master
quantval - Variable in class gov.nih.mipav.model.file.libjpeg.JQUANT_TBL
QuarticEquation - Class in gov.nih.mipav.model.algorithms: Copyright Yair Chuchem 2011.
QuarticEquation() - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquation
QuarticEquation(int, double, double, double, double, double, double, double, double, double, double, int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquation
QuarticEquation(int, double, double, double, double, double, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquation
QuarticEquation.complex_t - Class in gov.nih.mipav.model.algorithms
QuarticEquationEP - Class in gov.nih.mipav.model.algorithms: Copyright Yair Chuchem 2011.
QuarticEquationEP() - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquationEP
QuarticEquationEP(int, double, double, double, double, double, double, double, double, double, double, int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquationEP
QuarticEquationEP(int, double, double, double, double, double, int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.QuarticEquationEP
QuarticEquationEP.complex_t - Class in gov.nih.mipav.model.algorithms
quatern_a - Variable in class gov.nih.mipav.model.file.FileNIFTI: The orientation of the (x,y,z) axes relative to the (i,j,k) axes in 3D space is specified using a unit quaternion [a,b,c,d], where a*a+b*b+c*c+d*d=1.
quatern_b - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion b parameter
quatern_c - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion c parameter
quatern_d - Variable in class gov.nih.mipav.model.file.FileNIFTI: Quaternion d parameter
QuaternionMultiplicationIsAssociative() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.QuaternionParameterization
QuaternionParameterizationAwayFromZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionParameterizationNearZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionParameterizationTestHelper(double[], double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionParameterizationZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionProduct(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
QuaternionRotatePointGivesSameAnswerAsRotationByMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
QuaternionRotatePointGivesSameAnswerAsRotationByMatrixCanned() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Quaternions - Class in gov.nih.mipav.model.algorithms: Copyright (c) 2000-2009, Jay St.
Quaternions() - Constructor for class gov.nih.mipav.model.algorithms.Quaternions
QuaternionToAngleAxis(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
QuaternionToRotation(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
QuaternionToScaledRotation(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
QuatToEuler(Quat4d, Vector3d) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform a quaternion to euler.
queryBooleanProperty(String) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Query the boolean state of the specified property in a Canvas3D.
queryForDicomAutostart() - Method in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener: Ask user whether the dicom receiver should be enabled on startup.
queryForDicomAutostart() - Method in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener: Ask user whether the dicom receiver should be enabled on startup.
queryFrame - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: The GUI frame to starting queries.
queryIdx - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch
queryIntegerProperty(String) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Query the integer state of the specified property in a Canvas3D.
queryLev - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryLevel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryMsgID - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryPDU - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryResultTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryTableModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
queryType - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: Indicates the type of query (i.e.
queues - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
QUICK_LUT - Static variable in class gov.nih.mipav.view.ViewJComponentBase: This mode is used by the VOI Handler to determine whether VOIs will be drawn.
quick_select(double[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
quickList - Variable in class gov.nih.mipav.view.ViewMenuBuilder: List that holds the last X number of recently opened images.
QuickList(ActionListener) - Constructor for class gov.nih.mipav.view.ViewMenuBuilder.QuickList: Creates a new QuickList object.
quicklistIndex - Variable in class gov.nih.mipav.view.ViewMenuBuilder: Index for rebuilding quicklist.
quickListItems - Variable in class gov.nih.mipav.view.ViewMenuBuilder.QuickList: DOCUMENT ME!
quickListLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
quickLUT(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Called from the VOIManager class when a user has drawn the QuickLUT rectangle.
quickLUT(Vector3f[], ModelImage, ModelLUT) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: method that performs the quick LUT operation
quickLUTcursor - Static variable in class gov.nih.mipav.view.MipavUtil: Custom cursor: quick LUT.
quickPaintBrushIndex - Variable in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
quickPaintBrushIndex - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: int used for quick-key painting for speedier paint brush access.
quickRGB(Vector3f[], ModelImage, ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: DOCUMENT ME!
quickSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: After the first time the dialog is invoked, when user select the AAM segmentation from the menu item, the quick segmentation function is called to do the AAM classification.
quickSegmentation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: After the first time the dialog is invoked, when user select the AAM segmentation from the menu item, the quick segmentation function is called to do the AAM classification.
QuickSort - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the local implementation of quicksort for delaunay triangulation.
QuickSort - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
QuickSort(Comparator) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort
QuickSort(Comparator) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort
quickSwitchBrush() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Backups up ( and swaps if not null) the current and previously used paintBrush.
QuickTime - gov.nih.mipav.model.file.MetadataExtractor.FileType
quickTimeButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Apple quick time player button to play quick time movie.
quiet - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
quiet - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
quiet - Variable in class gov.nih.mipav.model.file.FileDicom: If the file is quiet no user-interaction is performed.
quiet - Variable in class gov.nih.mipav.model.file.FileIO: Refers to whether or not the FileIO reports progress or errors.
quiet - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
QUIET - gov.nih.mipav.model.algorithms.libdt.Verbose_mode
QUINTIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Quintic lagrangian interpolation.
QUINTIC_LAGRANGIAN - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Quintic lagrangian interpolation.
quinticLagrangian2D(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: 2D quintic Lagrangian function.
quinticLagrangian2DC(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: 2D quintic Lagrangian function for color.
quinticLagrangian3D(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: 3D quintic Lagrangian function.
quinticLagrangian3DC(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: 3D quintic Lagrangian function for color (3 channel images).
qup_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
QUPTC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
QUPTS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
QUWTC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
QUWTS - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
qVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
Qval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions: < Regularization method for S.
qValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
qValue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
qvqc(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qvrot(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
qvxform(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Quaternions
QWORK2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
qxmon(double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
Qxp - gov.nih.mipav.model.file.MetadataExtractor.FileType
QZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes

R

r - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
r - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
r - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
r - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
r - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
r - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
r - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute
r - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
r - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo
r - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
r - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.doublecomplex
r - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
r - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
r - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
r - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
r - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
r - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo
r() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
r(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
r(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
r(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
r(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
R - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
R - Static variable in class gov.nih.mipav.model.algorithms.Cephes
R - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < initial state mean
R - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info
R - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
R - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint
R - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
R - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
R - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
R - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
R - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
R() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
r_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
r_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the red value of this pixel at its current position.
r_data - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint
r_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
r_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
R_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
r_tolerance - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverPerSolveOptions
R_Y_OFF - Variable in class gov.nih.mipav.model.file.libjpeg
r00 - Variable in class gov.nih.mipav.model.file.FileNIFTI: The (proper) 3x3 rotation matrix that corresponds to quaternion [a,b,c,d] is [ a*a+b*b-c*c-d*d 2*b*c-2*a*d 2*b*d+2*a*c ] R = [ 2*b*c+2*a*d a*a+c*c-b*b-d*d 2*c*d-2*a*b ] [ 2*b*d-2*a*c 2*c*d+2*a*b a*a+d*d-c*c-b*b ]
r01 - Variable in class gov.nih.mipav.model.file.FileNIFTI: The (proper) 3x3 rotation matrix that corresponds to quaternion [a,b,c,d] is [ a*a+b*b-c*c-d*d 2*b*c-2*a*d 2*b*d+2*a*c ] R = [ 2*b*c+2*a*d a*a+c*c-b*b-d*d 2*c*d-2*a*b ] [ 2*b*d-2*a*c 2*c*d+2*a*b a*a+d*d-c*c-b*b ]
r02 - Variable in class gov.nih.mipav.model.file.FileNIFTI: The (proper) 3x3 rotation matrix that corresponds to quaternion [a,b,c,d] is [ a*a+b*b-c*c-d*d 2*b*c-2*a*d 2*b*d+2*a*c ] R = [ 2*b*c+2*a*d a*a+c*c-b*b-d*d 2*c*d-2*a*b ] [ 2*b*d-2*a*c 2*c*d+2*a*b a*a+d*d-c*c-b*b ]
r1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: Contrast relaxivity rate in 1/(mMol*sec) (0.0 - 1000.0)
r1 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
r1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
r1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
r1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
R1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
R1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
r10 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r11 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r12 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r1i - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: non-uniform tissue intrinsic relaxivity map from input 3d + t = 4D image
r1i - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
r1m5 - Variable in class gov.nih.mipav.model.algorithms.Bessel: D1MACH(5) = log10(2).
r1m5 - Variable in class gov.nih.mipav.model.algorithms.BesselEP: D1MACH(5) = log10(2). = log10(e) * loge(2.0)
r1Max - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
r1Min - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
R1MPYQ(int, int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
r1pt0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
r1ptj - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC
r1ptj - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
r1ptj - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task
r1ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
r1ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
r1ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
r1t0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
r1tj - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
R1UPDT(int, int, double[], int, double[], double[], double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
r2 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
r2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
r2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
R2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X
R2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
r20 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r21 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r22 - Variable in class gov.nih.mipav.model.file.FileNIFTI
r2ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
r2ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
r2strip(double[][], double[][], double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
r3 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
r4 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
r5 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
R5 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Ripple 5
r6 - Variable in class gov.nih.mipav.view.ColorWheel: radii of all the circles...r6 is the outermost radius
R7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Ripple 7
r8_acos(double) - Method in class gov.nih.mipav.model.structures.Triangulation
rabs - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
rabs - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
race - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
raceBox - Variable in class gov.nih.mipav.view.JPanelEditRace: DOCUMENT ME!
rad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle
rad - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
Rad2Deg(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Convert from radians to degrees.
radArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice
radCTZ - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for CTZ sequence
radCZT - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for CZT sequence
radi() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
radi() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
radi() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
RADIANS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: used for setting rotation
RADIANS - Static variable in class gov.nih.mipav.model.structures.TransMatrix: used for setting rotation
RADIANS - Static variable in class gov.nih.mipav.model.structures.TransMatrixd: used for setting rotation
radicalRatio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane expanding ratio.
RADIO_FLUOROSCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radio fluoroscopy.
RADIO_FLUOROSCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radio fluoroscopy.
radio3D - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
radio4D - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
radioAbdomen - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset radio buttons.
radioAbdomen - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset radio buttons.
radioAbdomen - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset radio buttons.
radioARGB - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
radioARGB - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioARGB - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioARGB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
radioARGB_FLOAT - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: DOCUMENT ME!
radioARGB_FLOAT - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioARGB_FLOAT - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO
radioARGB_FLOAT - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
radioARGB_UINTEGER - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
radioARGB_UINTEGER - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType
radioARGB_UINTEGER - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO
radioARGB_UINTEGER - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
radioARGB_USHORT - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: DOCUMENT ME!
radioARGB_USHORT - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioARGB_USHORT - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioARGB_USHORT - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
radioBackground2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioBackground3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioBackgrounds2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioBackgrounds3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioBinary - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
radioBool - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioBool - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioBool - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioBrainSurfaceFlattenerR - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the brainsurface flattener render mode in the right panel.
radioBSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
radioBSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
radioButtonGroupFlyMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: radio check button for fly-thru mode.
radioButtonGroupProjections - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Button group for projections.
radioButtonGroupProjections - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Button group for projections.
radioButtonGroupProjections - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Button group for projections.
radioButtonGroupProjections - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Button group for projections.
radioButtonGroupProjections - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Button group for projections.
radioButtonOrthographic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Radio Button for Orthographic rendering.
radioButtonOrthographic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Radio Button for Orthographic rendering.
radioButtonOrthographic - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Radio Button for Orthographic rendering.
radioButtonOrthographic - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Radio Button for Orthographic rendering.
radioButtonOrthographic - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Radio Button for Orthographic rendering.
radioButtonPerspective - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Radio Button for Perspective rendering.
radioButtonPerspective - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Radio Button for Perspective rendering.
radioButtonPerspective - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Radio Button for Perspective rendering.
radioButtonPerspective - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Radio Button for Perspective rendering.
radioButtonPerspective - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Radio Button for Perspective rendering.
radioButtonSVMBinary - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
radioButtonSVMBinary - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
radioButtonSVMBinary - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: SVM option button.
radioButtonSVMMulticlass - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
radioButtonSVMMulticlass - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
radioButtonSVMMulticlass - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
radioByte - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioByte - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioByte - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioClip - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: clip or promote radio button options
radioClip - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
radioClip - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
radioClip - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
radioColumn - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
radioColumn - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
radioCommon - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
radioCommon - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
radioComplex - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType
radioCOMPOSITE - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the COMPOSITE mode option.
radioCOMPOSITE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the COMPOSITE mode option.
radioCOMPOSITEShear - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the COMPOSITE mode option.
radioCustom - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the Custom blend mode option.
radioDComplex - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType
radioDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioEntireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
radioEntireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount
radioEntireImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
radioFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
radioFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioFlythruL - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the fly througth mode in the left panel.
radioGaussian - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
radioGradient - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Gradient magnitude and direction
radioGradientAll - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Gradient, Medialness and Intensity
radioGradientInt - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Gradient and Intensity
radioGradientMed - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Gradient and Medialness
RADIOGRAPHIC_IMAGING - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiographic imaging.
RADIOGRAPHIC_IMAGING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiographic imaging.
radioGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: button group for radio buttons
radioGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
radioGrowRegion2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioGrowRegion3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioHead - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
radioHead - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
radioHead - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
radioImageA - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
radioImageA - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Radio button for selecting image A as active.
radioImageB - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
radioImageB - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Radio button for selecting image B as active.
radioImageBoth - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Radio button for selecting both images as active.
radioInt - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioInt - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioInt - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Intensity
Radiological - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
radiologicalView - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
radioLong - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioLong - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioLong - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioLung - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
radioLung - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
radioLung - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
radioMean - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
radioMedial - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire: Radio button for Laplacian medialness
radioMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
radioMediastinum - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
radioMediastinum - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
radioMediastinum - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
radioMIP - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the MIP mode option.
radioMIP - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the MIP mode option.
radioMIPShear - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the MIP mode option.
radioMULTIHISTO - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Checkbox for the Multi-histo mode option.
radioNew - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
radioNoneR - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the none mode in the right panel.
radioOAR - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
radioOAR - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
radioObject2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioObject3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioObjects2D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radioObjects3D - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
radiopharmaceutical - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
radioPoisson - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
radioPreset - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
radioPromote - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: clip or promote radio button options
radioPromote - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
radioPromote - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
radioPromote - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
radioRange - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
radioRaycastR - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the raycast render mode in the right panel.
radioRayleigh - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
radioReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
radioRician - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise
radioRow - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
radioRow - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
radioSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
radioSeparate - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
radioSeparate - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
radioShearwarpR - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the shearwarp render mode in the right panel.
radioShort - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioShort - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioShort - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioSpine - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
radioSpine - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
radioSpine - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
radioSURFACE - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the SURFACE mode option.
radioSURFACE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the SURFACE mode option.
radioSURFACEFAST - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the SURFACE mode option.
radioSURFACEFAST - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the SURFACE mode option.
radioSurfaceL - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the surface render mode int the left panel.
radioSurfaceR - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the surface render mode in the right panel.
radioSURFACEShear - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the SURFACE mode option.
radioSurfaceView - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Radio button of the surface view mode in the left panel.
radioSurrenderCOMPOSITE - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the surface render composite mode.
radioSurrenderCOMPOSITE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the surface render composite mode.
radioSurrenderLIGHT - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the surface render lighting mode.
RADIOTHERAPY_DOSE - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiotherapy dose.
RADIOTHERAPY_DOSE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiotherapy dose.
RADIOTHERAPY_IMAGE - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiotherapy image.
RADIOTHERAPY_IMAGE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiotherapy image.
RADIOTHERAPY_PLAN - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiotherapy plan.
RADIOTHERAPY_PLAN - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiotherapy plan.
RADIOTHERAPY_RECORD - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiotherapy record.
RADIOTHERAPY_RECORD - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiotherapy record.
RADIOTHERAPY_STRUCTURE_SET - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality radiotherapy structure set.
RADIOTHERAPY_STRUCTURE_SET - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality radiotherapy structure set.
radioThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
radioTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogBlankImage: The Radio buttons for selecting the new data type of the image
radioUByte - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioUByte - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioUByte - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioUInt - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioUInt - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioUInt - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioUniform - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
radioUShort - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
radioUShort - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
radioUShort - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
radioVertebrae - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: DOCUMENT ME!
radioVertebrae - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: DOCUMENT ME!
radioVertebrae - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: DOCUMENT ME!
radioVOIRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
radioVOIRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount
radioVOIRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
radioX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Radio button of the X_AXIS mode option.
radioXRAY - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the XRAY mode option.
radioXRAY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Radio button of the XRAY mode option.
radioXRAYShear - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Radio button of the XRAY mode option.
radioY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Radio button of the Y_AXIS mode option.
radioZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Radio button of the Z_AXIS mode option.
radius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
radius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Radius of bleach spot in um.
radius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
radius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
radius - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
radius - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
radius - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector
radius - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Radius of zoom circle
radius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn diameter.
radius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: image space burning point radius.
radius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
radius - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
radius - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
radius - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
radius - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
Radius - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Transfer function radius:
Radius() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
Radius() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
Radius() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy
radius_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
radius_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
radiusButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Button for setting radius value.
radiusConstraint - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: Default cell radius (pixels).
radiusDistribution - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
radiusDistribution - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
radiusGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
radiusLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
radiusLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point diameter label.
radiusList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
radiusList - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
radiusPt - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning sphere radius, semiX, Y, Z in point format.
radiusText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
radiusText - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Text fields for zoom circle.
radiusText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: DOCUMENT ME!
Radon(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
Radon3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
RADS - gov.nih.mipav.model.file.FileInfoBase.Unit: Radians per second.
RADS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Radians per second.
RADS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - radians per second.
radSeparateVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
radTCZ - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for TCZ sequence
radText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
radTotalVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
radTZC - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for TZC sequence
radWholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
radZCT - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for ZCT sequence
radZTC - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: Radio button for ZTC sequence
Raf - gov.nih.mipav.model.file.MetadataExtractor.FileType: FujiFilm camera raw.
raFile - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
raFile - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
raFile - Variable in class gov.nih.mipav.model.algorithms.libdt
raFile - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
raFile - Variable in class gov.nih.mipav.model.file.FileBase: Pointer to file to read or write from.
raFile - Variable in class gov.nih.mipav.model.file.FileDicomBase: Pointer to file to read or write from.
raFileW - Variable in class gov.nih.mipav.model.file.FileAvi
raImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
RAImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
Rainbow - Static variable in class gov.nih.mipav.model.structures.ModelLUT
Rainbow2 - Static variable in class gov.nih.mipav.model.structures.ModelLUT
Rainbow3 - Static variable in class gov.nih.mipav.model.structures.ModelLUT
raisedbevel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Panel Border view.
raisedbevel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
raisedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
raisedBorder - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
rAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: DOCUMENT ME!
raList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
RAList() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RAList
Ram - gov.nih.mipav.model.file.MetadataExtractor.FileType
ramp1Max - Variable in class gov.nih.mipav.model.file.FileBioRad
ramp1Min - Variable in class gov.nih.mipav.model.file.FileBioRad
ramp2Max - Variable in class gov.nih.mipav.model.file.FileBioRad: LUT2 ramp max.
ramp2Min - Variable in class gov.nih.mipav.model.file.FileBioRad: LUT2 ramp min.
ran - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
ran - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
rand - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
rand - Variable in class gov.nih.mipav.model.algorithms.LIBSVM
rand - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: To generate wierd, unrecoverable names for anon images.
rand - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
rand(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WishartVariateGenerator
Rand() - Method in class gov.nih.mipav.model.algorithms.Fastfit
Rand() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Uniformly distributed random numbers.
Rand() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Uniformly distributed random numbers.
Rand(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Uniformly distributed integer random numbers.
RAND_MAX - Static variable in class gov.nih.mipav.model.algorithms.StochasticForests
RAND_MAX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
RAND_MAX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
RAND_MAX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
RAND_MAX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
RAND_PART_A_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
RAND_PART_B_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
RAND_PART_C_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream
randcantor2D(double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
randcantor3D(double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
randChildButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
RandDouble() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
RandDouble(long) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
RandN() - Method in class gov.nih.mipav.model.algorithms.Fastfit
RandN_previous - Static variable in class gov.nih.mipav.model.algorithms.Fastfit
RandN_usePrevious - Static variable in class gov.nih.mipav.model.algorithms.Fastfit
RandNormal() - Method in class gov.nih.mipav.model.algorithms.CeresSolver
random - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
random - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
random - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
random - Variable in class gov.nih.mipav.model.algorithms.WishartVariateGenerator
random - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
random() - Method in class gov.nih.mipav.model.structures.jama.LUSOL
random() - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
Random() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
RANDOM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
RANDOM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
RANDOM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
RANDOM(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
RANDOM_DIRECTORY_NAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
random_generator(long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
RANDOM_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
RANDOM_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
random_seed_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
RANDOM_SUBDIRECTORY_NAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
RandomAccessFileReader(RandomAccessFile) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
RandomAccessFileReader(RandomAccessFile, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader
RandomAccessFileReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest
RandomAccessReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader
RandomAccessStreamReader(InputStream) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
RandomAccessStreamReader(InputStream, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
RandomAccessStreamReader(InputStream, int, long) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader
RandomAccessStreamReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessStreamReaderTest
RandomAccessTestBase() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase
randomAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
RandomBallPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
randomButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
randomButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
randomButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
randomData - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
randomGen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
randomGen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
randomGen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
randomGen - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Reference to the random number generator.
randomInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
randomiseBlock() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
randomize(int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT
randomize(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Randomizes voxel cubes with similar average intensities.
RANDOMIZED_COST_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
RANDOMIZED_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
RandomizedCostFunction(double, long) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedCostFunction
RandomizedFunctor(double, long) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.RandomizedFunctor
randomizeTopLevelDir - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
RandomMatrix(Matrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
randomMatrixOptions - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
randomMatrixOptions - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
RandomNumberGen - Class in gov.nih.mipav.model.algorithms: Algorithm that produces a random number (Gaussian or uniform) in a specific user/programmer defined range.
RandomNumberGen() - Constructor for class gov.nih.mipav.model.algorithms.RandomNumberGen: RandomNumberGen - constructor.
randomOrder - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: DOCUMENT ME!
RandomSeed() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: flag for random seed in random walk.
RandomSpherePoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry
RandomVector(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RandomWalker(int[][], int, int[], int[], int, int[], float[][], int, int, float[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RandOrthMat(int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
randTopButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
randwishart(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit
range - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
range - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
range - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
range - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
range - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
Range() - Constructor for class gov.nih.mipav.model.algorithms.libdt.Range
Range(int, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.Range
Range(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.Range
Range(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Returns a sub range of a vector.
RANGE_BITS - Variable in class gov.nih.mipav.model.file.libjpeg
RANGE_CENTER - Variable in class gov.nih.mipav.model.file.libjpeg
RANGE_MASK - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
RANGE_SUBSET - Variable in class gov.nih.mipav.model.file.libjpeg_IDCT
rangeB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
rangeBandwidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
rangeBandwidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeField - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
rangeField - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
rangeFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Specifies how a range of pixels is excluded from VOI calculations.
rangeFlag - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The range type that this pixel exclusion selector covers.
rangeG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
rangeGaussianButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeKernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
rangeKernelType - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeMaximum - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: DOCUMENT ME!
rangeMaximum - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
rangeMaximumB - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMaximumB - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangeMaximumG - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMaximumG - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangeMaximumR - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMaximumR - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangeMinimum - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: DOCUMENT ME!
rangeMinimum - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
rangeMinimumB - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMinimumB - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangeMinimumG - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMinimumG - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangeMinimumR - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
rangeMinimumR - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
rangePanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
rangeR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
RANGES - Static variable in class gov.nih.mipav.model.file.FileSVS
RANGES - Static variable in class gov.nih.mipav.model.file.FileTiff
rangeString - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
rangesVector - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
rangeText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeText - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: X range text field in the imageA, B histogram dialog.
rangeText - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeText - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeText - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeTextB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: X range text field in the imageA, B histogram dialog.
rangeTextB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeTextB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeTextB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

X range text field in the imageA, B histogram dialog.
rangeTextGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: X range text field in the Gradient Magnitude imageA, B histogram dialog.
rangeTextGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

X range text field in the Gradient Magnitude imageA, B histogram dialog.
rangeTextGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: X range text field in the Gradient Magnitude imageA, B histogram dialog.
rangeTextGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

X range text field in the Gradient Magnitude imageA, B histogram dialog.
RangeType() - Constructor for enum gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType
rangeUniformButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
rangeX - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
rangeX - Variable in class gov.nih.mipav.view.JPanelHistogram: X range value of the imageA, B and GM imageA, B.
rangeX - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

X range value of the imageA, B and GM imageA, B.
rangeX - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

X range value of the imageA, B and GM imageA, B.
rangeXB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

X range value of the imageA, B and GM imageA, B.
rangeXB - Variable in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

X range value of the imageA, B and GM imageA, B.
rangeY - Variable in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
rank - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.uni_elt
rank - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
rank() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition: Effective numerical matrix rank
rank(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Sample ranks starting from 1.
RANK_H - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
RANK_H - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
RANK_L - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
RANK_L - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
RANK_NMX - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
RANK_NMX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
rank2nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
RANK2NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
RankDeficientCovarianceTestAutomaticTruncation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rankTr_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
ransac(SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Ransac, SIFT3D.Affine, int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
Ransac() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Ransac
raPool - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
rase() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
rase_mean - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
raster - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
raster - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
Rat42CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat42CostFunction
Rat42Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Rat42Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Rat43CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Rat43CostFunction
Rat43Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Rat43Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
rate - Variable in class gov.nih.mipav.model.file.FileAvi
rate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Frame rate per second.
rate - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Frame rate.
rateBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Text field for the frame rate per second.
rateBox - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Frame rate textbox.
rateGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
rates - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t: rates of layers
rating - Variable in class gov.nih.mipav.model.file.FileInfoCZI
ratio - Variable in class gov.nih.mipav.model.file.FileInfoCZI
Ratio - Static variable in class gov.nih.mipav.model.structures.ModelLUT
ratioLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
Rational(long, long) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Rational: Creates a new instance of Rational.
RATIONAL - gov.nih.mipav.model.file.FileSVS.Type: 2 longs 1st numerator
RATIONAL - gov.nih.mipav.model.file.FileTiff.Type: 2 longs 1st numerator
RATIONAL - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RATIONAL - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
RationalTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest
ratioText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
rAvg - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
rAvg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
rAvg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
raw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t: RAW component
RAW - Static variable in class gov.nih.mipav.model.file.FileUtility: RAW image data, no header. extension: .raw
raw_data_out - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
RAW_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
RAW_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: RAW MULTIFLE image data, no header.
rawDataStudyNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
rawDataStudyNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
rawDataSystemID - Variable in class gov.nih.mipav.model.file.FileGESigna4X
rawDataSystemID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
rawExtension - Variable in class gov.nih.mipav.model.file.FileImageXML: The extension to give to the RAW file associated with the XML header.
rawFile - Variable in class gov.nih.mipav.model.file.FileDicom: DOCUMENT ME!
RawImage - gov.nih.mipav.view.Argument.InstanceArgument
rawImageFormatString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: raw image format...hardcoded to float since we will be outputting par/rec slices in float format
RawImageInfo - Class in gov.nih.mipav.model.file: Class designed to hold pre-loaded information for opening RAW images.
RawImageInfo(int, int[], float[], int[], int, boolean) - Constructor for class gov.nih.mipav.model.file.RawImageInfo: Constructor used when running scripts from the GUI
RawImageInfo(String) - Constructor for class gov.nih.mipav.model.file.RawImageInfo: Constructor used when running from command line.
rawInfo - Variable in class gov.nih.mipav.model.file.FileIO: DOCUMENT ME!
rawInfo - Variable in class gov.nih.mipav.view.dialogs.ScriptImage
rawInfo - Variable in class gov.nih.mipav.view.ViewOpenFileUI
rawInfo - Variable in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo: Instructions for opening raw images.
RAWJP2Header - Class in gov.nih.mipav.model.file.rawjp2: 3D JP2 image header reader/writer.
RAWJP2Header() - Constructor for class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
RAWL_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
rawRunNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 384 RawData Run Number.
Ray - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Ray2f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Ray2f
rayBasedRender - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Raycast based renderer reference, raycast renderer or shear warp renderer.
rayBasedRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Raycast based renderer reference, raycast renderer or shear warp renderer.
rayBasedRenderWM - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Raycast based renderer reference, raycast renderer or shear warp renderer.
RAYCAST - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
raycastCameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
RayCastColor - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D color images.
RayCastColor(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor: The constructor for the ray tracer.
RayCastColorComposite - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Ray traced rendering of the volume using composition of colors and alpha values at each voxel.
RayCastColorComposite(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite: The constructor for the ray tracer.
RayCastColorDRR - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D images.
RayCastColorDRR(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR: The constructor for the ray tracer.
RayCastColorLighting - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Ray traced rendering of the level surface within the voxel for the fixed level value of 0.0.
RayCastColorLighting(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting: The constructor for the ray tracer.
RayCastColorMIP - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Maximum intensity projection volume rendering for color-based volumes.
RayCastColorMIP(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP: The constructor for the ray tracer.
RayCastColorReflection - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Ray traced rendering of the level surface within the voxel for the fixed level value of 0.0.
RayCastColorReflection(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection: The constructor for the ray tracer.
RayCastIntensity - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D intensity images.
RayCastIntensity(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity: The constructor for the ray tracer.
RayCastIntensityDRR - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D images.
RayCastIntensityDRR(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR: The constructor for the ray tracer.
RayCastIntensityDRRBresenham - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A sample ray tracer that extends RayTrace.
RayCastIntensityDRRBresenham(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRRBresenham: The constructor for the ray tracer.
RayCastIntensityMIP - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A sample ray tracer that extends RayTrace.
RayCastIntensityMIP(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityMIP: The constructor for the ray tracer.
raycastOptionsPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Control panels for the raycast render.
raycastRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
RayCastRenderer - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D images.
RayCastRenderer(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: The constructor for the ray tracer.
raycastRenderWM - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Volume/Slice/Surface renderer.
raycastTabVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
rayCastToolBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Raycast toolbar.
RAYLEIGH - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
RAYLEIGH - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise
RAYLEIGH_FIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
RAYLEIGH_FIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
rayleighFit - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
rayleighmode(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
raySpaceSize - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Default ray tracing space size.
rayStepSize - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Default ray tracing step size.
rayTracerA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
rayTracerB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
rb - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: The number of bits that determine the nominal dynamic range
rb - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: The number of bits that determine the nominal dynamic range
rbceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
rbf - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
RBF - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
RBF - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
RBF(float) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
RBF3D(int, int, int, int, int, int, float) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
RBIO - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
rbpm - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 832 respiratory rate, breaths per minute.
Rbt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
RBT_Black - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RBT_Red - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtCopy(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtDelete(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtDeleteAux(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtDeleteFixup(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtElt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
RbtInsert(AlgorithmPowerWatershed.Rbt, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtInsertAux(AlgorithmPowerWatershed.Rbt, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtInsertSimple(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
rbtInteractiveTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtMaximum(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtMinimum(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtPopMin(AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtPrint(AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtPrintRec(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
rbtRandomTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtReAlloc(AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtSearch(AlgorithmPowerWatershed.Rbt, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtSuccessor(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtTermine(AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtTransRec(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
RbtVide(AlgorithmPowerWatershed.Rbt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
Rc() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Texture parameter update prediction matrix.
rCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
rCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
rcGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
rChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: If true filter the red channel.
rChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: if T, filter the red channel.
rChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
rChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: when true, indicates whether to process the colour channel.
rChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
rChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: // if T, filter the red channel.
rcIndex(int, int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.WishartVariateGenerator
RCOND - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
RCOPY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rcorners(double[][], double[], double[][], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
RCr - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RCr - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
rcText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
rcvGain1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 250 Actual receive gain analog (.1db).
rcvGain2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 252 Actual receive gain digital (.1db).
rcvType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 836 type of receiver used.
rd(Random) - Method in class gov.nih.mipav.model.algorithms.KDTree
rderiv(double[][], double[][], double[], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rdi - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
RDIV - Variable in class gov.nih.mipav.model.algorithms.CVODES
rdr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
re - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
read() - Method in class gov.nih.mipav.model.algorithms.LSCM.EdgeTrait
read() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.ModREADInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
read() - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.ModREADInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
read() - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
read() - Static method in class gov.nih.mipav.view.Preferences: Reads the "mipav.preferences" file from the user's 'home' directory.
read(byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Simple method that take a byte array and call read with two parameters: byte array and array length.
read(byte[]) - Method in interface gov.nih.mipav.model.file.DicomType
read(byte[]) - Method in class gov.nih.mipav.model.file.FileDicomBase: Reads into the supplied buffer data from the DICOM tag buffer.
read(byte[]) - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType
read(byte[]) - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType
read(byte[]) - Method in class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
read(byte[]) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
read(byte[]) - Method in class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
read(byte[]) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
read(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory
read(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Reads a specified number of bytes into the byte data buffer.
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
read(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
read(byte[], int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
read(byte[], int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
read(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.IntFilterInputStream
read(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.IntFilterInputStream
read(int[][], int, int[][], int) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
read(int[][], int, int[][], int) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.IntFilterInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.IntFilterInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
read(int[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
read(int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
read(int[], int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
read(libdt.CovMatrix) - Method in class gov.nih.mipav.model.algorithms.libdt
read(libdt.Dytex) - Method in class gov.nih.mipav.model.algorithms.libdt
read(libdt.DytexMix) - Method in class gov.nih.mipav.model.algorithms.libdt
read(libdt.DytexOptions) - Method in class gov.nih.mipav.model.algorithms.libdt
read(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: Reads the header and body of the PDU message from the connection.
read(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: A simplified read if no info is necessary.
read(DICOM_Object, DICOM_PDUService, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CResponse: Reads a DIMSE-C message.
read(DICOM_PDUService, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Reads the verification request and responds with (write) a ECHO_SUCESS.
read(DICOM_PDUService, DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Reads a DIMSE-C message.
read(DICOM_PDUService, DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdStorage: Does not have functionality yet.
read(DICOM_PDUService, DICOM_Object, DICOM_PDUService) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve: Read a C-MOVE request - this is used when acting like server and responding to a move request.
read(File, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemMetadataReader
read(String[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLinePoint3D
read(String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.libdt
read(String, byte[]) - Method in class gov.nih.mipav.model.algorithms.libdt
read(String, double[]) - Method in class gov.nih.mipav.model.algorithms.libdt
read(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineFloat
read(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineInt
read(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineReadable
read(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineString
read(String, int[]) - Method in class gov.nih.mipav.model.algorithms.libdt
read(String, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
read(String, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt
read(Buffer) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream: This is called from the Processor to read a frame worth of video data.
read(Buffer) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: This is called from the Processor to read a frame worth of video data.
read(Buffer) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream: This is called from the Processor to read a frame worth of video data.
read(Point3i) - Method in class gov.nih.mipav.model.algorithms.libdt
READ - Static variable in class gov.nih.mipav.model.file.FileBase: Read only access.
READ - Static variable in class gov.nih.mipav.model.file.FileDicomBase: Read only access.
read_backing_store_byte(libjpeg.jpeg_decompress_struct, libjpeg.backing_store_info, byte[][], long, int) - Method in class gov.nih.mipav.model.file.libjpeg
read_backing_store_short(libjpeg.jpeg_decompress_struct, libjpeg.backing_store_info, short[][], long, int) - Method in class gov.nih.mipav.model.file.libjpeg
read_framesarg - Variable in class gov.nih.mipav.model.algorithms.SIFT
read_framesarg - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
read_gt_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Grab the test image in mipav .xml file format.
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Grab the test image in mipav .xml file format.
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Read image full path for SKI10 dataset.
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Read image full path for SKI10 dataset.
read_image_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
read_JPEG_buffer(byte[], String, String) - Method in class gov.nih.mipav.model.file.libjpeg
read_JPEG_buffer(String) - Method in class gov.nih.mipav.model.file.libjpeg
read_markers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
read_model_header(BufferedReader, LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
read_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
read_name(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
read_name_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
read_name_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
read_name_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
read_name_patella(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
read_obj(String) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh
read_poly(poly) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
read_problem() - Method in class gov.nih.mipav.model.algorithms.LIBSVM
read_problem() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
read_restart_marker(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
READ_SIZE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
READ_WRITE - Static variable in class gov.nih.mipav.model.file.FileBase: Read-write access.
READ_WRITE - Static variable in class gov.nih.mipav.model.file.FileDicomBase: Read-write access.
read_XY(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
read1D() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
read1D() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
read2D() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
read2D() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
ReadACF(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Reads and parses an ACF file.
readACPC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
readacqp() - Method in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
readAfni(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an AFNI file by calling the read method of the file.
readAfniMatrix(RandomAccessFile) - Static method in class gov.nih.mipav.model.structures.TransMatrix: Reads AFNI-style matrix and does processing to generate TransMatrix result
readAgain - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
readAllBytes(InputStream) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamUtil
readAnalyze(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an analyze file by calling the read method of the file.
readAnalyzeMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi Analyze file.
readAnnotationsCSV(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Read a list of annotations from a CSV file: name,x,y,z,radius (optional)
readAnnotationXML(VOIVector) - Method in class gov.nih.mipav.model.file.FileVOI: Reads in an annotation xml (.lbl) file and puts all VOITexts into a VOIVector (to be added to the image)
readApplicationExtensionBlock(MetadataExtractor.SequentialReader, int, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readArray() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readArrayTypes() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readAscii(File) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read a TriMesh from an ascii file.
readAsciiDouble(RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT
readAsciiInt(RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SIFT
ReadASF(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Reads an ver. 0.90 .asf into relative coordinates.
ReadASF0_90(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Reads an ver. 0.90 .asf into relative coordinates.
ReadASFfromVOI(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Generate ASF shape from given VOI
ReadASFfromVOI_init(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
readAvi(String, String, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an AVI file by calling the read method of the file.
ReadBandedFile(String) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Temporary function to handle AAM image file IO for AAM own testing cases.
readBBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
readBFLOAT(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a BFLOAT file by calling the read method of the file.
readBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Dummy method and should be overloaded by DICOMPDUService.
readBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink: Copies data from the port buffer into the a new buffer used typically in pDataTF.
readBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO: Read file stream data into buffer.
readBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Actual binary data from the port.
readBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Low level socket read.
readBioRad(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a BioRad PIC file by calling the read method of the file.
readBit() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
readBit() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
readBit() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
readBit() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
readBitmapHeader(MetadataExtractor.SequentialReader, MetadataExtractor.BmpHeaderDirectory, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
readBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
readBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
readBits(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
readBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
readBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
readBits(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
readBits(int, int) - Method in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
readBits(int, int) - Method in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
readBlock(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: This is the method that actually reads in the data from the socket or IO stream.
readBMatrixFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Loads the BMatrix file.
readBMP(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a BMP file by calling the read method of the file.
readBMPMulti(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: Reads the connection.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Reads the body of an association accept.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ: Reads the body of an association rejection.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Reads the body of an association request.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRQ: Reads the body of an association release request.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRSP: Reads the body of an association release response.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem: Reads the body of the sub item.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength: Reads the maximum sublength out the connection (port).
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Reads the connection.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType: Reads the body (i.e.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Reads the body of the presentation context.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept: Reads the body of an accepted presentation context.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect: Reads the body of the SCP/SCU.
readBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: Reads the body of the user information packet.
readBRUKER(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a BRUKER file by first reading in the d3proc header file, second the reco header file, third the acqp file, and finally the 2dseq binary file.
readBuffer(float[]) - Method in class gov.nih.mipav.model.file.FileGESigna4X: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(float[]) - Method in class gov.nih.mipav.model.file.FileGESigna5X: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileBFLOAT: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileBioRad: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileBRUKER: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileDM3: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileICS: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileInterfile: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileLSM: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileMRC: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileSTK: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileSVS: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileTiff: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileTMG: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[], float, float) - Method in class gov.nih.mipav.model.file.FileFits: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(int, float[], float, int) - Method in class gov.nih.mipav.model.file.FileAfni: Reads a slice of data at a time and stores the results in the buffer.
readBuffer(FloatBuffer, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
readBuffer(FloatBuffer, ModelImage, int) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
readBValGradientFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: reads the bval/gradient file...both dti studio format and fsl format are accepted
readBVector1D(Vector<Boolean>, BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Read a 1d vector written by saveVector1D() from filestream.
readBVGradBMatfile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: reads the bval/gradient file...dti studio format, BRUKER method, and fsl format are accepted
readByte() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Reads a single byte from the data stream.
readByte() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readByte() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: Read byte.
readBytes(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Allocates and.
readBytes(File) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.FileUtil: Reads the contents of a File into a byte[].
readBytes(String) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.FileUtil: Reads the contents of a File into a byte[].
readChar(String, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: reads char
readCheshire(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Cheshire file by calling the read method of the file.
readColorMapA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readColorMapB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readColorMapRGBA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readColorMapRGBB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readCommentBlock(MetadataExtractor.SequentialReader, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readComplexBuffer(int, float[], float[]) - Method in class gov.nih.mipav.model.file.FileDM3: Reads a slice of data at a time and stores the results in the buffer.
readComplexBuffer(int, float[], float[]) - Method in class gov.nih.mipav.model.file.FileICS: Reads a slice of data at a time and stores the results in the buffer.
readComplexBuffer(int, float[], float[]) - Method in class gov.nih.mipav.model.file.FileMRC: Reads a slice of data at a time and stores the results in the buffer.
readCompressed() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
readCompressed() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
readConfigFile(File) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
readContours(ModelImage, String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
readContourVOI() - Method in class gov.nih.mipav.model.file.FileVOI: This method read a VOI file that has been saved in the MIPAV VOI format.
readControlBlock(MetadataExtractor.SequentialReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readCoordXML(VOI, boolean) - Method in class gov.nih.mipav.model.file.FileVOI: Reads in a VOI from a file using the new VOI schema based on Scanner coordinates rather than pixel space
readCOR(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a COR file by first reading the header file then reading in each separate slice file.
readCResponseAlias(DICOM_PDUService, DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest: Reads a DIMSE-C message.
readCString() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
readCString() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
readCString() - Method in class gov.nih.mipav.model.file.FileBMP
readCString() - Method in class gov.nih.mipav.model.file.FileCZI
readCString() - Method in class gov.nih.mipav.model.file.FileLIFF
readCString() - Method in class gov.nih.mipav.model.file.FileMATLAB
readCSV(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
readCZI(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Zeiss ZISRAW (CZI) file by calling the read method of the file.
readCZPrivateTag() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readd3proc() - Method in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
readData(int, int, int, DICOM_Comms) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR: Reads a VR from a Buffer (network socket).
readDBuffer(int, double[]) - Method in class gov.nih.mipav.model.file.FileDM3: Reads a slice of data at a time and stores the results in the buffer.
readDBuffer(int, double[]) - Method in class gov.nih.mipav.model.file.FileICS: Reads a slice of data at a time and stores the results in the buffer.
readDBuffer(int, double[]) - Method in class gov.nih.mipav.model.file.FileInterfile: Reads a slice of data at a time and stores the results in the buffer.
readDBuffer(int, double[], double, double) - Method in class gov.nih.mipav.model.file.FileFits: Reads a slice of data at a time and stores the results in the buffer.
readDComplexBuffer(int, double[], double[]) - Method in class gov.nih.mipav.model.file.FileDM3: Reads a slice of data at a time and stores the results in the buffer.
readDComplexBuffer(int, double[], double[]) - Method in class gov.nih.mipav.model.file.FileICS: Reads a slice of data at a time and stores the results in the buffer.
readDelimitedBytes() - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile: Reads a string from the file up to the current delimiter.
readDelimitedBytes(char) - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile: This method retrieves a String consisting of all characters from the current pointer location in the random access file and the temporary delimiter.
readDicom(String, String[], boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a list of DICOM files.
readDICOMDataObjectFromFile(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Loads a DICOM image from a file.
readDicomImage(String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
readDicomWeight(int, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Get the slice data for the image with the given slice and weight.
readDM3(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Dm3 file by calling the read method of the file.
readDouble() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readDouble(boolean) - Method in class gov.nih.mipav.model.file.FileBase: reads double value
readDoubleBuffer(int, double[]) - Method in class gov.nih.mipav.model.file.FileSVS: Reads a slice of data at a time and stores the results in the buffer.
readDoubleBuffer(int, double[]) - Method in class gov.nih.mipav.model.file.FileTiff: Reads a slice of data at a time and stores the results in the buffer.
readDrawingElement() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readDVector1D(Vector<Double>, BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Read a 1d vector written by saveVector1D() from filestream.
readDVector2D(Vector<Vector<Double>>, BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Read a 2d vector written by saveVector2D() from filestream.
readEndingSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: update the ending slices.
readEndingSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: update the ending slices.
readEndingSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read the end slices and update the segmentation processing range.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Read the ending slice index to guide the segmentation towards apex and base.
readEndingSlicesDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read the ending slice index to guide the segmentation towards apex and base.
readEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
readEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
readEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModREADInputStream
readEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
readEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
readEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModREADInputStream
reader - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
reader - Variable in class gov.nih.mipav.view.graphVisualization.MipavSAXReader
reader - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: File reader
reader - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ReadExample(ModelImage, ModelSimpleImage, CAAMShape, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Read example from target image, scale down if necessary.
ReadExample(String, ModelSimpleImage, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Wrapper to read image and VOIs
ReadExample(String, ModelSimpleImage, CAAMShape, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
ReadExample_init(ModelImage, ModelSimpleImage, CAAMShape, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Read example from target image, scale down if necessary.
readf - Variable in class gov.nih.mipav.model.file.FileMATLAB
readFacetB(ByteBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Method that reads a face in binary files All binary versions of the methods end by 'B' As in binary files we can read the number of faces, we don't need to use coordArray and normArray (reading binary files should be faster)
readFATCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: File chooser to select target image directory.
readFATCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: File chooser to select target image directory.
readFATCEDImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: read target image.
readFATCEDImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: read target image.
readFATImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: File chooser to select target image directory.
readFATImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: File chooser to select target image directory.
readFATImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: File chooser to select target image directory.
readFATImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: File chooser to select target image directory.
readFATImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: File chooser to select target image directory.
readFATImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: read target image.
readFATImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: read target image.
readFATImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: read target image.
readFATImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: read target image.
readFATImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: read target image.
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Read testing images and the HNN predcited probability maps.
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Read testing images and the HNN predcited probability maps.
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Read the SKI10 dataset ( .MHD image and .MHD ground truth labels ).
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Read the SKI10 dataset ( .MHD image and .MHD ground truth labels ).
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
readFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
readFile(double[][][][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
ReadFile(String) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Temporary function to handle AAM image file IO for AAM own testing cases.
readFileContents(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
readFileHeader(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
readFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: The read filename.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: read 2D slices directory.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Read image and VOIs file names.
readFiles() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Read image and VOIs file names.
readFileType(boolean, boolean, String, String) - Method in class gov.nih.mipav.model.file.FileIO
readFill(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Reads in a nBytes and puts them in a ByteBuffer and puts the byte buffer in the vector of incomingBuffers.
readFill(DICOM_Comms, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink: Sets linkToComms to connection and fills(read) the connection buffer via readBinary.
readFinalLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
readFinalLattice(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
readFinalLattice(String, boolean, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
readFits(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a FITS file by calling the read method of the file.
readFloat() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readFloat() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: Read float.
readFloat(boolean) - Method in class gov.nih.mipav.model.file.FileBase: reads float value
readFloat(byte[], int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Translates the byte[] into float values at the given indes iIndex.
readFloatImage(ModelImage, int, float[], float[], long) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a raw image file (1D - 5D).
readFloatWeight(int, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Get the slice data for the image with the given slice and weight.
readFrames - Variable in class gov.nih.mipav.model.algorithms.SIFT
readFrames - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
readFramesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
readFreesurferBinaryPatch(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
ReadFromDisk(String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Reads an image from disk.
readFromFile(File, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem: see Train.readProblem(File, double)
readFromFile(String) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Reads transform info file
readFully(byte[], int, int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readFunctions() - Method in class gov.nih.mipav.model.file.FileHistoLUT: This method reads the transfer and RGB functions associated with a LUT.
readFunctions(ModelLUT) - Method in class gov.nih.mipav.model.file.FileHistoLUT: This method reads the transfer for a grayscale image and the RGB functions that define the LUT.
readFunctions(ModelRGB) - Method in class gov.nih.mipav.model.file.FileHistoLUT: This method reads the transfers for a RGB image.
readGEGenesis5X(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads in a single GE Genesis type file.
readGEGenesis5XMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads in multiple GE Genesis 5x type files.
readGESigna4X(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads in a single GE Signa 4x type file.
readGESigna4XMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads in multiple GE Signa 4x type files.
readGifExtensionBlock(MetadataExtractor.SequentialReader, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readGifHeader(MetadataExtractor.SequentialReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readGradientFileDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This method reads in the gradient file gradient file can be in 2 differetn ways....for eDTI, there will be a number on first line followed by correct number of gradients if it is DTI, there will be no number and just 7 linies of gradients....this needs to be duplicated as many times as there are series.
readGradientFileParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this method reads the gradient file
readGREImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: File chooser to select target image directory.
readGREImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: File chooser to select target image directory.
readGREImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: read target image.
readGREImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: read target image.
readGTFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
readGTFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
readGtruthFile(String, Vector<String>, Vector<Vector<String>>, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.libdt
readHeader() - Method in class gov.nih.mipav.model.file.FileAfni: Reads AFNI header (.HEAD file)
readHeader() - Method in class gov.nih.mipav.model.file.FileAvi: Reads the image header.
readHeader() - Method in class gov.nih.mipav.model.file.FileICS: Reads the image header.
readHeader() - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Reads the Magnetom file header and data.
readHeader() - Method in class gov.nih.mipav.model.file.FileMicroCat: DOCUMENT ME!
readHeader() - Method in class gov.nih.mipav.model.file.FileMinc: Reads in all the tags available in the file and stores them in FileInfoMinc.
readHeader() - Method in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
readHeader() - Method in class gov.nih.mipav.model.file.FileTrackVis: Reads TrackVis header, first 1000 bytes of TRK file.
readHeader() - Method in class gov.nih.mipav.model.file.FileZVI
readHeader(boolean) - Method in class gov.nih.mipav.model.file.FileDicom: Reads in all the tags available in the file and stores them in the Hashtable in FileInfoDicom.
readHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType: Reads the PDU item header.
readHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUType: Reads the PDU type header.
readHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
readHeader(String) - Method in class gov.nih.mipav.model.algorithms.libdt
readHeader(String) - Method in class gov.nih.mipav.model.file.FileIO: Reads generic file from an absolute filename.
readHeader(String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads generic file from an absolute filename.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileAnalyze: Reads the analyze header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileCheshire: Reads the header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileMGH: Reads the MGH header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileNRRD: Reads the NRRD header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileOME: Read the image XML header.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FilePARREC: Reads the analyze header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileSiemensText: Reads the SiemensText header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileSpar: Reads the spar header and stores the information in fileInfo.
readHeader(String, String) - Method in class gov.nih.mipav.model.file.FileVista: reads the header
readHeader(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readHeader(String, String, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI: Reads the NIFTI header and stores the information in fileInfo.
readHeader(String, String, TalairachTransformInfo) - Method in class gov.nih.mipav.model.file.FileImageXML: Reads and parses an XML header.
readHeader(String, String, String) - Method in class gov.nih.mipav.model.file.FileXML: readHeader parses the input XML file based on the input XSD file, kFileXSD:
readHeader(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileMincHDF
readHeaderInt() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: Returns an int read from the header of the PGM file.
readHeapMax(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
readHorizontalMode1() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
readHorizontalMode1() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
readHorizontalMode2() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
readHorizontalMode2() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
readICS(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads an ICS file by calling the read method of the file.
readImage() - Method in class gov.nih.mipav.model.file.FileAfni: readImage.
readImage() - Method in class gov.nih.mipav.model.file.FileCheshire: Reads an Cheshire image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage() - Method in class gov.nih.mipav.model.file.FileICS: readImage.
readImage() - Method in class gov.nih.mipav.model.file.FileJSON: reads the JSON file header and data.
readImage() - Method in class gov.nih.mipav.model.file.FileMedVision: readImage - reads a MedVision file in MAC format (i.e., decodes resource info).
readImage() - Method in class gov.nih.mipav.model.file.FileMRC: reads the MRC file header and data.
readImage() - Method in class gov.nih.mipav.model.file.FileOME: Reads an XML image file by reading the XML header then making a FileRaw to read the image for all filenames in the file list.
readImage() - Method in class gov.nih.mipav.model.file.FilePGM
readImage() - Method in class gov.nih.mipav.model.file.FilePPM
readImage() - Method in class gov.nih.mipav.model.file.FileTMG: reads the TMG file header and data.
readImage() - Method in class gov.nih.mipav.model.file.FileTrackVis: Reads TrackVis series of tracks and creates masks from them, based on stored fileInfo.
readImage() - Method in class gov.nih.mipav.model.file.FileVista: reads the image
readImage() - Method in interface gov.nih.mipav.plugins.PlugInFile: Read an image of the type handled by this plugin.
readImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileAnalyze: Reads an analyze image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileAvi: Reads the AVI file header and data.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileBFLOAT: Reads the image.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileBioRad: reads the BioRad pic file header and data.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileBRUKER: This method reads one slice from the file into byteBuffer and then transfers into the float array imgBuffer.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileDM3: reads the DM3 file header and data.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileFits: reads the FITS file header and data.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileImageXML: Reads an XML image file by reading the XML header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileMetaImage: reads the MetaImatge file header and data.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileMGH: Reads a MGH image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileMicroCat: Reads the image as a full 3D dataset.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileMincHDF: Reads a MINC 2.0 HDF-5 file
readImage(boolean) - Method in class gov.nih.mipav.model.file.FilePARREC: Reads an PAR/REC image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileSiemensText: Reads an SiemensText image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileSpar: Constructs a SPAR image mask based on the parameters defined in FileInfoSPAR
readImage(boolean) - Method in class gov.nih.mipav.model.file.FileSPM: Reads an SPM image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB: Reads the MATLAB header.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileBMP: Reads the BMP header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileCZI: Reads the CZI header.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileInterfile: Reads the image.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileJP2: Reads the JP2 header which indicates the number of slices and each slice's size.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileLIFF: Reads the LIFF header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileLSM: Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileMATLAB: Reads the MATLAB header.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileMinc: Reads a MINC image file and stores the data in file info.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileNRRD: Reads a NRRD image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileSTK: Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileSVS: Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileTiff: Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean) - Method in class gov.nih.mipav.model.file.FileZVI: Reads the LIFF header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
readImage(boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI: Reads a NIFTI image file by reading the header then making a FileRaw to read the image for all filenames in the file list.
readImage(boolean, boolean, String) - Method in class gov.nih.mipav.model.file.FileMicroCat: Reads the image.
readImage(double[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a DICOM image file and stores the data into the given double buffer.
readImage(double[], long) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a file and puts the data in the buffer.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileAnalyze: Reads an analyze image file by reading the header then making a FileRaw to read the file.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileGESigna4X: reads the Signa 4X file header and data.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileGESigna5X: reads the Signa 5X file header and data.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileImageXML: Reads an XML image file by reading the header then making a FileRaw to read the file.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileMGH: Reads a MGH image file by reading the header then making a FileRaw to read the file.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileNIFTI: Reads a NIFTI image file by reading the header then making a FileRaw to read the file.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FilePARREC: Reads in a PAR/REC image (first the header file, then the raw file)
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileSiemensText: Reads an SiemensText image file by reading the header then making a FileRaw to read the file.
readImage(float[]) - Method in class gov.nih.mipav.model.file.FileSPM: Reads an SPM image file by reading the header then making a FileRaw to read the file.
readImage(float[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a DICOM image file and stores the data into the given float buffer.
readImage(float[], long) - Method in class gov.nih.mipav.model.file.FileNIFTI: Reads a NIFTI image file by reading the header then making a FileRaw to read the file.
readImage(float[], long, int) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a file and puts the data in the buffer.
readImage(int) - Method in class gov.nih.mipav.model.file.FileCOR: This method reads one slice from the file into byteBuffer and then transfers into the float array imgBuffer.
readImage(int[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a DICOM image file and stores the data into the given short buffer.
readImage(int[], long, int) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a file and puts the data in the buffer.
readImage(int, long, int) - Method in class gov.nih.mipav.model.file.FileRawChunk: This method reads a raw chunk from a file.
readImage(short[]) - Method in class gov.nih.mipav.model.file.FileMagnetomVision: Reads a slice of data at a time and stores the results in the buffer.
readImage(short[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a DICOM image file and stores the data into the given short buffer.
readImage(short[], long, int) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a file and puts the data in the buffer.
readImage(ModelImage, int) - Method in class gov.nih.mipav.model.file.FileMap: readImage - This method reads a raw chunk from a file.
readImage(ModelImage, long) - Method in class gov.nih.mipav.model.file.FileRaw: This method reads a raw image file (1D - 5D).
readImage(String) - Method in class gov.nih.mipav.model.file.FileIO: Reads generic file from an absolute filename.
readImage(String) - Method in class gov.nih.mipav.view.ViewSplashScreen: Read the splash screen image from disk.
readImage(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readImage(String, String, boolean, FileInfoBase) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readImage(String, String, boolean, FileInfoBase, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readImage(String, String, boolean, FileInfoBase, int) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readImage(String, String, boolean, FileInfoBase, int, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readImage2() - Method in class gov.nih.mipav.model.file.FileAfni: Reads AFNI image (.BRIK file)
readImageA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readImageB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readImageBlock(MetadataExtractor.SequentialReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
readImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
readImageColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readImageColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
readImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
readImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
readImageFileData() - Method in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
readImageFileData() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
readImageJ(String, String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
readImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
readImages(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
readImages(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
ReadImages(Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Wrapper to read shape from given image and VOIs vector
ReadImages(Vector<ModelImage>, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Reads a set of shapes in the order given in the vector of strings.
readImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: read target image.
readImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: read target image.
readImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read target image
readImagesAndVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Read image and corresponding VOI.
readImagesAndVOIsFromMid() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Read image and VOIs start from the mid slice.
readImagesAndVOIsInReverse() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Read image and VOI in reverse order.
readImagesExra() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
readImagesExra() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
readImagesExra() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
readIn() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
readIn() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
readIn(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
readIn(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
readInfoImage() - Method in class gov.nih.mipav.model.file.FileCOR: DOCUMENT ME!
readInObject(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: The main method for reading incoming DICOM messages. true: complete PData unit received, socket still open false: release request received, then close the socket
readInt() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readInt() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: Read int.
readInt(boolean) - Method in class gov.nih.mipav.model.file.FileBase: Reads int value
readInt32() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Reads a 4 byte integer (otherwise known as an int).
readInteger(byte[], int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Translates the byte[] into integer values at the given indes iIndex.
readIntegerWeight(int, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Get the slice data for the image with the given slice and weight.
readInterfile(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an Interfile file by calling the read method of the file.
readInterfileMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi Interfile file.
readJimi(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a JIMI file by calling the read method of the file.
readJpeg2000(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a JPEG2000 file by calling the read method of the file.
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DuckyReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IptcReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfifReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JfxxReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDhtReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegDnlReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegReader
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentMetadataReader: Extracts metadata from all instances of a particular JPEG segment type.
readJpegSegments(Iterable<byte[]>, MetadataExtractor.Metadata, MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopReader
readKernelFile(String) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase: Helper function which reads the file with the given name and returns the contents of this file as a String.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Read 3D images directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Parsing 3D images directory and the HNN generated probablity maps directory
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Parsing 3D images directory and the HNN generated probablity maps directory
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Read 3D images directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Read 3D images directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Read the 10-fold cross-validataion training folds
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Read the AAM atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Read the AAM atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read AAM model atlas.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Read 2D slices.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Read the key image director and generate image name and voi name vectors.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Read 3D images atlas directory.
readKeyImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
readKsData() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readLabelsFromFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Reads the 'labels' file from disk.
readLatticeCSV(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
readLatticeCSV(String, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
readLaxFileHeapMax(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Reads the InstallAnywhere startup file and returns the start up heap memory string.
readLBuffer(int, long[]) - Method in class gov.nih.mipav.model.file.FileDM3: Reads a slice of data at a time and stores the results in the buffer.
readLBuffer(int, long[]) - Method in class gov.nih.mipav.model.file.FileICS: Reads a slice of data at a time and stores the results in the buffer.
readLBuffer(int, long[]) - Method in class gov.nih.mipav.model.file.FileInterfile: Reads a slice of data at a time and stores the results in the buffer.
readLegacyFileParameters(RandomAccessFile, int[], float[], float[], float[], int[], int[], int[], boolean[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.TransMatrix
readLegacyLattice(String, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
readLeicaSeries(JDialogLoadLeica.LeicaSeries) - Method in class gov.nih.mipav.model.file.FileSVS: Passed in a LeicaSeries object, this function builds a 2d or 3d reconstruction using the Vector of filenames within the series The vector has been presorted so that all files (whether red - green and then blue, or just grayscale) are read in sequentially to build the ModelImage.
readLeicaSeries(JDialogLoadLeica.LeicaSeries) - Method in class gov.nih.mipav.model.file.FileTiff: Passed in a LeicaSeries object, this function builds a 2d or 3d reconstruction using the Vector of filenames within the series The vector has been presorted so that all files (whether red - green and then blue, or just grayscale) are read in sequentially to build the ModelImage.
readLIFF(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Improvision OpenLab LIFF file by calling the read method of the file.
readline(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
readline(BufferedReader) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
readLine() - Method in class gov.nih.mipav.model.file.FileAfni: readLine() - reads a line of the file and strips comments indicated by the # symbol.
readLine() - Method in class gov.nih.mipav.model.file.FileBFLOAT: Reads lines of the file and strips comments indicated by the ; symbol until a nonnull String results or the end of the file is reached.
readLine() - Method in class gov.nih.mipav.model.file.FileBRUKER: Reads lines of the file until a nonnull String results or the end of the file is reached.
readLine() - Method in class gov.nih.mipav.model.file.FileCOR: Reads lines of the file until a nonnull String results or the end of the file is reached.
readLine() - Method in class gov.nih.mipav.model.file.FileICS: readLine() - reads a line of the file header separate into category, subcategory, and values.
readLine() - Method in class gov.nih.mipav.model.file.FileInterfile: Reads lines of the file and strips comments indicated by the ; symbol until a nonnull String results or the end of the file is reached.
readLine() - Method in class gov.nih.mipav.model.file.FileJSON: readLine() - reads a line of the file and strips comments indicated by the # symbol.
readLine() - Method in class gov.nih.mipav.model.file.FileMetaImage: readLine() - reads a line of the file header separate into category, subcategory, and values.
readLine() - Method in class gov.nih.mipav.model.file.FileMicroCat: Reads lines of the file and strips comments indicated by the : symbol until a nonnull String results or the end of the file is reached.
readLine() - Method in class gov.nih.mipav.model.file.FileNRRD: Reads lines of the file and strips comments indicated by the # symbol until a nonnull String results or the end of the file is reached or a blank line containing end of header with zero characters is reached.
readLine() - Method in class gov.nih.mipav.model.file.FilePGM: readLine() - reads a line of the file and strips comments indicated by the # symbol.
readLine() - Method in class gov.nih.mipav.model.file.FilePPM: readLine() - reads a line of the file and strips comments indicated by the # symbol.
readLine() - Method in class gov.nih.mipav.model.file.FileVOI: Reads a line of the file and strips comments indicated by the # symbol.
readLine(InputStream) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyReader: Read a line of ASCII text from the input stream.
readLine(InputStream) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read a line of ASCII text from the input stream.
readLine(InputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
readLine(InputStream) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Read a line of ASCII text from the input stream.
readLine(RandomAccessFile) - Static method in class gov.nih.mipav.model.file.FileHistoLUT: Reads a line of the file and strips comments indicated by the # symbol.
readLine(RandomAccessFile, boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: Reads lines of the file until a nonnull String results or the end of the file is reached.
ReadLines(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Reads a file into an array of lines.
readLinkedImage() - Method in class gov.nih.mipav.view.ViewOpenFileUI: DOCUMENT ME!
readListFile() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: read list file
readLong() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readLong(boolean) - Method in class gov.nih.mipav.model.file.FileBase: reads long value
readLSM(String, String, int, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a LSM file by calling the read method of the file.
readLSMMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi LSM file by first reading the headers then reading in each separate file.
readLut() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readLUTandTFunctFrom(String, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: This method reads a LUT and Transfer function from a file diretory specified.
readLUTandTransferFunction(boolean) - Method in class gov.nih.mipav.model.file.FileHistoLUT: This method reads a LUT file and its associated transfer function.
readLUTandTransferFunction(ModelLUT, boolean) - Method in class gov.nih.mipav.model.file.FileHistoLUT: This method reads a LUT file and its associated transfer function.
readMagnetomVision(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Magnetom Vision file by calling the read method of the file.
readMagnetomVisionMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads multiple Magnetom Vision files by calling the read method of the file.
readMap(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Map file by calling the read method of the file.
readMarkedSegment() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
readMarkedSegment() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
readMarkerHandler(int, FileJPEG2000.opj_j2k_t, byte[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
readMaskfile(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
readMATLAB(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a NATLAB file by calling the read method of the file.
readMatrix(RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: Reads: 1.)
readMatrix(RandomAccessFile, boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix: Reads transformation matrix to a text file.
readMatrix(RandomAccessFile, boolean) - Method in class gov.nih.mipav.model.structures.TransMatrixd: Reads transformation matrix to a text file.
readMatrix(RandomAccessFile, int[], float[], float[], float[], float[], float[], float[], int[], int[], int[], int[], int[], int[], boolean[], boolean[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix: Reads transformation matrix to a text file.
readMatrix(RandomAccessFile, int[], float[], float[], float[], int[], int[], int[], boolean[], boolean[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix: Deprecated.
readMedVision(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a MedVision file by calling the read method of the file.
readMeshContoursCSV() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
readMessageStatus - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF: Flag used to identify read message status.
readMetadata(File) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpMetadataReader
readMetadata(File) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
readMetadata(File) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader
readMetadata(File, Iterable<MetadataExtractor.JpegSegmentMetadataReader>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
readMetadata(InputStream) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpMetadataReader
readMetadata(InputStream) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
readMetadata(InputStream) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader
readMetadata(InputStream, Iterable<MetadataExtractor.JpegSegmentMetadataReader>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
readMetaImage(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a MetaImage file by calling the read method of the file. if so, calls that method instead.
readMethod() - Method in class gov.nih.mipav.model.file.FileBRUKER: Reads the optional method file that may be part of the Bruker scan.
readMGH(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a MGH file by calling the read method of the file. if so, calls that method instead.
readMH(byte[], int, InputStream, int) - Method in class gov.nih.mipav.model.file.FileSVS
readMH(byte[], int, InputStream, int) - Method in class gov.nih.mipav.model.file.FileTiff
readMicroCat(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an Micro Cat file by calling the read method of the file.
readMinc(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a MINC file by calling the read method of the file.
readMincHDF(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO
readMincMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi Minc file.
ReadModel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Reads the complete AAMModel from disk.
ReadModel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Reads the complete AAMModel from disk.
readModels() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read SVM model atlas.
ReadModels(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Reads the complete AAMModel from disk.
readMRC(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a MRC file by calling the read method of the file.
readMultiMatrix(RandomAccessFile) - Static method in class gov.nih.mipav.model.structures.TransMatrix: Reads a file containing a list of multiple TransMatrix values.
readMultiTransformMatrix(JTextField) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Reads the multiple-matrix file from disk.
readMultlmodalImages() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: File chooser to select target image directory.
readMultlmodalImages() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: File chooser to select target image directory.
readNaugeVOI(String) - Method in class gov.nih.mipav.model.file.FileVOI: This method read a VOI file that has been saved in the Nauge VOI format.
readNewXML() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
readNIFTI(String, String, boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a NIFTI file by calling the read method of the file. if so, calls that method instead.
readNIFTIMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi NIFTI file.
readNRRD(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a NRRD file by calling the read method of the file. if so, calls that method instead.
readNRRDMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi NRRD file.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Called by some native invokeMethod.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Called by some native invokeMethod.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget: Read a new CircleClassificationWidget from the input stream.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Read this object from disk:
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Read this object from disk.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget: Read this object from disk:
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Read this object from disk.
readObject(ObjectInputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
readOffsetAcquisitionParameters() - Method in class gov.nih.mipav.model.file.FileLSM
readOffsetChannelFactors() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readOffsetCharacteristics() - Method in class gov.nih.mipav.model.file.FileLSM
readOffsetPalette() - Method in class gov.nih.mipav.model.file.FileLSM
readOffsetPositions() - Method in class gov.nih.mipav.model.file.FileLSM
readOffsetTilePositions() - Method in class gov.nih.mipav.model.file.FileLSM
readOffsetUnmixParameters() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readone() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
readOneImage(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads file, determines file type, and calls a read function specific to the file.
readOrderedARGB(File[], int, int[], boolean, Dimension, boolean) - Method in class gov.nih.mipav.model.file.FileIO: This method examines parameter fileList and loads TIFF files according to the order in the list.
readOrderedGrayscale(File[], boolean, Dimension, boolean) - Method in class gov.nih.mipav.model.file.FileIO: This method will load a group of files in the order of fileList.
readOrderedGrayscale(File[], boolean, Dimension, boolean, int, int) - Method in class gov.nih.mipav.model.file.FileIO: This method will load a group of files in the order of fileList.
readOrderedGrayscale2(File[], boolean, Dimension, boolean, int, int) - Method in class gov.nih.mipav.model.file.FileIO
readOtherOrientationVOI() - Method in class gov.nih.mipav.model.file.FileVOI: This method read a VOI file that has been saved in the MIPAV VOI format (MIPAV *.voi, Nuages, and MIPAV *.xml).
readPaintBitmap() - Method in class gov.nih.mipav.model.file.FilePaintBitmap
readPARREC(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a PARREC file by calling the read method of the file.
readPARRECMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi PARREC file.
readPassMode() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
readPassMode() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
readPathFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: Loads the .path file.
readPGM(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a PGM file by calling the read method of the file.
readPlainTextBlock(MetadataExtractor.SequentialReader, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader
readPlistFileHeapMax(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Reads the InstallAnywhere startup file and returns the start up heap memory string.
readPlyAscii(FileInputStream, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
readPlyAsciiMesh(TriMesh, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyReader
readPoint(StreamTokenizer, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Find the given label in the tokenizer stream and then return the next three numbers as a point.
readPointVOI() - Method in class gov.nih.mipav.model.file.FileVOI: This method read a VOI.POINT file that has been saved in the MIPAV PTS format.
readPPM(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a PPM file by calling the read method of the file.
readProblem(File, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train: reads a problem from LibSVM format
readProblem(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
readQT - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
readQT(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a QT file by calling the read method of the file.
readRaw(String, String, FileInfoBase) - Method in class gov.nih.mipav.model.file.FileIO: Reads a RAW file by calling the read method of the file.
readRawJP2Header(String) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
readRawMulti(String, String, FileInfoBase) - Method in class gov.nih.mipav.model.file.FileIO: Reads a RAW file by calling the read method of the file.
readreco() - Method in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
readSampleImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: When read the AAM model atlas, read corresponding pivot images from atlas direction.
readSampleImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: When read the AAM model atlas, read corresponding pivot images from atlas direction.
readSampleImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read the AAM model.
readScanInformation() - Method in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
readSegFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
readSegFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
readSegments(MetadataExtractor.SequentialReader, Iterable<MetadataExtractor.JpegSegmentType>) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader: Processes the provided JPEG data, and extracts the specified JPEG segments into a MetadataExtractor.JpegSegmentData object.
readSegments(File, Iterable<MetadataExtractor.JpegSegmentType>) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader: Processes the provided JPEG data, and extracts the specified JPEG segments into a MetadataExtractor.JpegSegmentData object.
ReadShapes(Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Wrapper to read shapes from asf files
ReadShapes(Vector<String>, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Reads a set of shapes in the order given in the vector of strings.
readShort() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readShort() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: Read short.
readShort(boolean) - Method in class gov.nih.mipav.model.file.FileBase: reads short value
readShort16() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Reads a 2 byte integer (otherwise known as a short).
readShortToFloatImage(float[], int, int) - Method in class gov.nih.mipav.model.file.FileDicom: Reads a DICOM image file and stores the data into the given short buffer.
readSiemensText(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an siemenstext file by calling the read method of the file.
readSimpleData(int, int) - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readsites() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
readSites(double[], double[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
readSliceWeight(int, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Get the slice data for the image with the given slice and weight.
readSpar(FileInfoBase, String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Spar file by calling the read method of the file.
readSPM(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an SPM file by calling the read method of the file.
readSTK(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a STK file by calling the read method of the file.
readSTLAscii(StreamTokenizer, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Read the STL ASCII file as a single stream tokenizer.
readSTLBinary(FileInputStream, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Method for reading binary files Execution is completly different It uses ByteBuffer for reading data and ByteOrder for retrieving the machine's endian (Needs JDK 1.4) TO-DO: 1.
readSTLBinary(FileInputStream, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
readSTLBinary(FileInputStream, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
readSTLBinary(FileInputStream, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
readSTLBinary(FileInputStream, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: This method read the STL surface file, convert the 3D surface into VOI contours.
readSTLBinary(FileInputStream, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
readSTLBinary(FileInputStream, ModelImage, int, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
readStr() - Method in class gov.nih.mipav.model.file.FileTMG: DOCUMENT ME!
readStraightLattice(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
readString() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readString(int) - Method in class gov.nih.mipav.model.file.FileBase: Reads the length of the characters from the file.
readStruct() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readStructTypes() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readSurface(ModelImage, File, Color4f) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D: Load a triangle mesh from the specified file and assign to it the specified color.
readSurface(ModelImage, File, MaterialState) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load a triangle mesh from the specified file and assign to it the MaterialState.
readSurface(ModelImage, File, MaterialState, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: Load a triangle mesh from the specified file and assign to it the MaterialState.
readSurface(String, File, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adding the surface with specific directory, file name, and surfaceOpacity.
readSurfaceXML(String, String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D: Reads and parses a SurfaceRef.XML header.
readSurfaceXML(String, String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D: Reads and parses a Surface.XML header.
readSurfaceXML(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM: Reads and parses a Gifti XML file.
readSurfaceXML(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM: Reads and parses a SurfaceRef.XML header.
readSVMModelDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read SVM model atlas.
readSVS(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a SVS file by calling the read method of the file.
readTableData(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
readTableData(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
readTagEntry(int) - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readTagGroup() - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readTagType(int) - Method in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
readTar(InputStream, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: DOCUMENT ME!
readTar(InputStream, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: DOCUMENT ME!
readTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: File chooser to select target image directory.
readTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: File chooser to select target image directory.
readTargetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Read target image.
readTargetImageFeature() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: We pre-processing target image with coherence enhance diffusion (CED) filter, then extract SVM features from it and save it to the corresponding target image directory.
readTestImage - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
readTiff(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a TIFF file by calling the read method of the file.
readTiffMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi TIFF file by first reading the headers then reading in each separate file.
readTileBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileLSM: Reads a slice of data at a time and stores the results in the buffer.
readTileBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileSTK: Reads a slice of data at a time and stores the results in the buffer.
readTileBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileSVS: Reads a slice of data at a time and stores the results in the buffer.
readTileBuffer(int, float[]) - Method in class gov.nih.mipav.model.file.FileTiff: Reads a slice of data at a time and stores the results in the buffer.
readTLRC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
readTMG(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a TMG file by calling the read method of the file.
readTrackVis(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads in a single TrackVis file.
readTrailer(byte[]) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader: Given a full byte array containing the BPLIST, read the trailer object from the end of the array. 5 unused bytes and 1 sort version are skipped.
readTransferFunction(RandomAccessFile, TransferFunction, String) - Method in class gov.nih.mipav.model.file.FileHistoLUT: Reads in a transfer function from a file.
readTransformMatrix(boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Read matrix from a file.
readTransformMatrix(JTextField) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Reads a single matrix file from disk.
readTransformMatrixFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Reads a matrix from a file.
readTransformMatrixFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Reads a matrix from a file.
readTransformMatrixFile(String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Reads a matrix from a file.
readTrialInfo(String, Vector<Vector<Integer>>, Vector<Vector<Integer>>) - Method in class gov.nih.mipav.model.algorithms.libdt
readUnknownData() - Method in class gov.nih.mipav.model.file.FileDicom: Gets private tags or other tags where the type is unknown; does not change the data, so it may be written out correctly.
readUnsignedByte() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readUnsignedInt() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readUnsignedShort() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
readUnsignedShort(boolean) - Method in class gov.nih.mipav.model.file.FileBase: reads unsigned short value
readv - Variable in class gov.nih.mipav.model.file.FileMATLAB
readVecDouble(String, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.libdt
ReadVector(RandomAccessFile, int, int[], int, int) - Static method in class gov.nih.mipav.model.structures.jama.SuperLU
readVector1D(Vector<Integer>, BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Read a 1d vector written by saveVector1D() from filestream.
readVector2D(Vector<Vector<Integer>>, BufferedReader) - Method in class gov.nih.mipav.model.algorithms.StochasticForests: Read a 2d vector written by saveVector2D() from filestream.
readVectorString(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.libdt
readVecVecDouble(String, Vector<Vector<Double>>) - Method in class gov.nih.mipav.model.algorithms.libdt
readVerticalMode() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
readVerticalMode() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
readVista(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO
readvisu_pars() - Method in class gov.nih.mipav.model.file.FileBRUKER: DOCUMENT ME!
readVMOptionsFileHeapMax(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
readVOI() - Method in class gov.nih.mipav.model.file.FileCheshireVOI: readVOI - reads an Cheshire overlay file by reading the overlay information for each different VOI into a different bitmap.
readVOI(boolean) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML: This method read a VOI file that has been saved in the MIPAV VOI format.
readVOI(boolean) - Method in class gov.nih.mipav.model.file.FileVOI: This method read a VOI file that has been saved in the MIPAV VOI format (MIPAV *.voi, Nuages, and MIPAV *.xml).
readWriteImage() - Method in class gov.nih.mipav.model.file.FileAvi
readXML() - Method in class gov.nih.mipav.view.dialogs.InstanceVOI: Reads in the older VOI XML schema (using pixel coordinates)
readXML() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI: Reads in the older VOI XML schema (using pixel coordinates)
readXML(VOI) - Method in class gov.nih.mipav.model.file.FileVOI: Reads in the older VOI XML schema (using pixel coordinates)
readXML(File) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
readXML(String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
readXML(String, String, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads an XML file by calling the read method of the file.
readXML(Vector<Vector3f>) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML
readXMLMulti(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a multi XML file.
readXMLPolylines_WM(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceVTKXML_WM
readXMLSurface(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceVTKXML_J3D: Parses vtk xml
readXMLSurface_WM(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceVTKXML_WM: Parses vtk xml
readXMLThumbnail(String, String) - Method in class gov.nih.mipav.model.file.FileIO: Reads a thumbnail image from an XML file. if thumbnail is empty, will returned FileImageXML will be null.
readXYZBuffer(int, float[], float[], float) - Method in class gov.nih.mipav.model.file.FileAfni: Reads a slice of data at a time and stores the results in the buffer.
readyToDispose - Variable in class gov.nih.mipav.view.ViewJProgressBar: For users wanting to override the automatic closing option when progress reaches 100.
readZVI(String, String, boolean) - Method in class gov.nih.mipav.model.file.FileIO: Reads a Zeiss ZVI file by calling the read method of the file.
real - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryItem: DOCUMENT ME!
real - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation.complex_t
real - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP.complex_t
real_num_passes - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_seg_t
real_num_segs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t
REAL_VERSION - Static variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
REAL_VERSION - Static variable in class gov.nih.mipav.model.algorithms.Hypergeometric
REAL_VERSION - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic
REAL_VERSION - Static variable in class gov.nih.mipav.model.algorithms.Psi
realA - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
realArgument() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric: This is a port of subroutine HYGFX from Computation of Special Functions by Shanjie Zhang and Jianming Jin, pp. 376-379.
realArgument() - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic: This is a port of subroutine JELP from Computation of Special Functions by Shanjie Zhang and Jianming Jin, pp. 671-672.
realB - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
realData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Real data.
realData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Real data.
realData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
realData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
realData - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Real data.
realImaginaryComparator() - Constructor for class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryComparator
realImaginaryItem(double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets.realImaginaryItem: Creates a new realImaginaryItem object.
realize_virt_arrays(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
realKernelData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
realKernelData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
reallocate(int) - Method in class gov.nih.mipav.model.structures.ModelImage: Reallocates ModelImage with new type and all image data lost.
reallocate(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Disposes of old data and constructs a new buffer of the user specific type if the image in NOT locked.
reallocate(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Disposes of old data and constructs a new buffer of the user specific type if the image in NOT locked.
reallocate(int, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Reallocates ModelImage with new type and all image data lost.
reallocate(int, int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Disposes of old data and constructs a new buffer of the user specific type if the image in NOT locked.
reallocate(ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Reallocate destImage so that fileInfo and buffer equal required length
realmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
REALPARAM_COMPLEXARG_VERSION - Static variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
RealPolynomial - Class in gov.nih.mipav.model.structures
RealPolynomial(double) - Constructor for class gov.nih.mipav.model.structures.RealPolynomial
RealPolynomial(double[]) - Constructor for class gov.nih.mipav.model.structures.RealPolynomial
RealPolynomial(RealPolynomial) - Constructor for class gov.nih.mipav.model.structures.RealPolynomial
realPsi() - Method in class gov.nih.mipav.model.algorithms.Psi: This code is a port of the FORTRAN routine PSI from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 58-59.
realResult - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: outputted result
realResult - Variable in class gov.nih.mipav.model.algorithms.Gamma: Real part of outputted result
realResult - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: outputted result
realResult - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: outputted result
realResult - Variable in class gov.nih.mipav.model.algorithms.Psi: Real part of output result
reals() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
reals() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
REALS - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
REALS - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
realt() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
realt() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
REALT - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
REALT - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
realTestFirstKind() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
realTestSecondKind() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
realValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
realValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: DOCUMENT ME!
realX - Variable in class gov.nih.mipav.model.algorithms.Gamma: Real part of input argument
realX - Variable in class gov.nih.mipav.model.algorithms.Psi: Real part of input argument
realZ - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input argument
realZ - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input argument
realZ - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic: Input argument
reason - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: DOCUMENT ME!
reason - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ: DOCUMENT ME!
reavuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
reavuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
rebuild() - Method in class gov.nih.mipav.view.ViewMenuBuilder.QuickList: Rebuilds the QuickList by calling Preferences.getLastXImages().
rec_a(double[], int, PyWavelets.DiscreteWavelet, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
rec_d(double[], int, PyWavelets.DiscreteWavelet, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
rec_hi - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
rec_len - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
rec_lo - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
rec_outbuf_height - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
RecalcMeanTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Recalculates the mean texture vector 'm_vMeanTexture'.
recalculateInstanceNumber - Variable in class gov.nih.mipav.model.file.FileWriteOptions: recalculate the Instance Number (0020,0013).
reCalculateJunctionNeighbours() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
recalculateSlopes() - Method in class gov.nih.mipav.model.structures.TransferFunction: DOCUMENT ME!
recall - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
receiveAttenuatorSetting - Variable in class gov.nih.mipav.model.file.FileGESigna4X
receiveAttenuatorSetting - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
receiverClient(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Routine to Process a DICOM Store Request.
receiverMaximumLikelihood(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: For an input signal value this routine returns the log of the maximimum likelihood function.
ReceivingCoil - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
recenter_kernel - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
recentSamples - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
reciprocal() - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is 1 / this.
recoInpSize - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
recommendedReceiveAttenuation - Variable in class gov.nih.mipav.model.file.FileGESigna4X
recommendedReceiveAttenuation - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
recommendedReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
recommendedReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
recommendedTransmitAttenuation - Variable in class gov.nih.mipav.model.file.FileGESigna4X
recommendedTransmitAttenuation - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
recommendedTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
recommendedTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
recomputeDataSize() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Recomputes the datasize based on the type of buffer.
RECON(int, boolean, int, int, int[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
reconAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
reconAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
reconAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
reConfigureVolumeFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Constructs main frame structures for 3 image planes.
reConfigureVolumeFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Constructs main frame structures for 3 image planes.
reconstruct() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
Reconstruct(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
reconstruct_gradient() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
reconstruct_gradient() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
reconstruct_laplacian_pyramid(Vector<double[][]>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
reconstruct_wh(Matrix, Matrix, double[][][], Matrix, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
reconstructedImage - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
reconstructedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
reconstruction_buffer_length(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
reconstructionByDilationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
reconstructionByErosionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
reconstructionMethod - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
reconstructSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
reconstructSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
reconstructSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
reconstructSurfaceFromVOIs() - Method in class gov.nih.mipav.view.ViewJFrameImage: Reconstruct the prostate surface from the coarse VOIs cloudy points.
reconstructTracts() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Constructs the Fiber Bundle Tracts from the DTI and the EigenVectorImage parameters.
ReconyxHyperFire2MakernoteDescriptor(MetadataExtractor.ReconyxHyperFire2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDescriptor
ReconyxHyperFire2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory
ReconyxHyperFireMakernoteDescriptor(MetadataExtractor.ReconyxHyperFireMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDescriptor
ReconyxHyperFireMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory
ReconyxUltraFireMakernoteDescriptor(MetadataExtractor.ReconyxUltraFireMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDescriptor
ReconyxUltraFireMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory
record(boolean) - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface: Turn recording frames on/off.
record(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
record(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
Record() - Constructor for class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record: Creates a new heap record.
RECORD_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Recorder/Player is recording.
RECORD_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Recorder/Player is recording.
RECORD_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Recorder/Player is recording.
recordButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Recorder button.
recordButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Recorder button.
recordButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Recorder button.
recordButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
recordButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
recorderStatus - Variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: The current status of the recorder, either PAUSED, RECORDING, or STOPPED.
recorderStatus - Variable in class gov.nih.mipav.model.scripting.ScriptRecorder: The current status of the recorder, either PAUSED, RECORDING, or STOPPED.
recorderToAVI - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Reference to RecordMouse object class.
recorderToAVI - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Reference to RecordMouse object class.
recordEventName - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Flag indicates whether to record the clip event name.
RECORDING - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Status indicating that the script recorder is currently recording.
RECORDING - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder: Status indicating that the script recorder is currently recording.
RECORDING_ENTRY_CAMERA_BINNING - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_CAMERA_FRAME_HEIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_CAMERA_FRAME_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_CAMERA_OFFSETX - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_CAMERA_OFFSETY - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_CAMERA_SUPERSAMPLING - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_IMAGES_HEIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_IMAGES_NUMBER_CHANNELS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_IMAGES_NUMBER_PLANES - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_IMAGES_NUMBER_STACKS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_IMAGES_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_INTERPOLATIONY - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_LINE_SPACING - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_LINES_PER_PLANE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_LINSCAN_XY_SIZE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_NOTES - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_NUMBER_OF_STACKS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_NUTATION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_OBJECTIVE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_ORIGINAL_SCAN_DATA - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PLANE_HEIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PLANE_SPACING - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PLANE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PLANES_PER_VOLUME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_POSITION_BCCORRECTION1 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_POSITION_BCCORRECTION2 - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PRECESSION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_PRESCAN - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_PROCESSING_SUMMARY - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_ROTATION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_RT_BINNING - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_FRAME_HEIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_FRAME_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_LINEPERIOD - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_OFFSETX - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_OFFSETY - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_REGION_HEIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_REGION_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_RT_ZOOM - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_SAMPLE_0TIME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SAMPLE_0X - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SAMPLE_0Y - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SAMPLE_0Z - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SAMPLE_SPACING - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SAMPLES_PER_LINE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SCAN_DIRECTION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SCAN_DIRECTIONZ - Static variable in class gov.nih.mipav.model.file.FileLSM
RECORDING_ENTRY_SCAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_SPECIAL_SCAN_MODE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_START_SCAN_EVENT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_START_SCAN_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_START_SCAN_TRIGGER_IN - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_START_SCAN_TRIGGER_OUT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_STOP_SCAN_EVENT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_STOP_SCAN_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_STOP_SCAN_TRIGGER_IN - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_STOP_SCAN_TRIGGER_OUT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_TIME_SERIES - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_USE_BCCORRECTION - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_USE_REDUCED_MEMORY_ROIS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_USE_ROIS - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_USER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_VOLUME_DEPTH - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_ZOOM_X - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_ZOOM_Y - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RECORDING_ENTRY_ZOOM_Z - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
recordingInputImage - Variable in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: The image whose processing should be recorded in the script.
recordingListeners - Variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder: A list of listeners who want to know about lines added to the script.
recordingListeners - Variable in class gov.nih.mipav.model.scripting.ScriptRecorder: A list of listeners who want to know about lines added to the script.
recordingMaskType - Variable in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: The type of mask extracted from the paint (which should now be recorded).
recordingMaskType - Variable in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: The type of mask extracted from the VOIs (which should now be recorded).
recordingNewImageName - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The new name given to the image.
recordingOldImageName - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeName: The old image name.
recordingOptions - Variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: The file saving options used to save the image, which should be recording in the script.
recordingResultImage - Variable in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: The image generated by processing the input image, if any.
recordingTabName - Variable in class gov.nih.mipav.model.scripting.actions.ActionSaveTab: The name of the tab to record the saving of.
recordingTargetDir - Variable in class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: The directory where the VOIs were saved to, which should be recorded in the script.
recordingTargetDir - Variable in class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: The directory where the VOI intensities were saved to, which should be recorded in the script.
recordLineMeasure() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
recordMouse(String, JPanelMouse, int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Unchanged.
RecordMouse(int, double, FileAvi) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: Constructor that sets up the variables needed for the screen capture and allocates the buffers appropriately.
RecordMouse(int, double, FileAvi) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: Constructor that sets up the variables needed for the screen capture and allocates the buffers appropriately.
recordPanning() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
recordRate - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
Records - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker: Picking records along the mouse click point.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Let user specify the saved 2D slices, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Let user specify the saved 2D slices, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Let user specify the saved 2D slices, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Record the save 2D slice features directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Let user specify the saved 2D slices atlas, record the save directory.
recordSaveImageDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Let user specify the saved 2D slices atlas, record the save directory.
recordScriptButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder.JScriptToolBar: The recording button.
recordZoom(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
recoSize - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER: The size of the reconstruction
recover(double[][], double[][], int, int, double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
reCreateBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
reCreateBox(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
reCreateClipPlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
reCreateLabels() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
reCreateScene(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
reCreateScene(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
reCreateScene(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called by the init() function.
reCreateScene(VolumeImage, VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
reCreateScene(VolumeImage, VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
reCreateScene(VolumeImage, Vector3f, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
reCreateScene(VolumeImage, Vector3f, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
recreateShaderEffect(Renderer, Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
recSocket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Socket manager.
rect - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdtree
RECT - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
RECT() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.RECT
RECT(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.RECT
rectAccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rectaffine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
rectangle(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
RECTANGLE - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: Bleached ROI shapes.
RECTANGLE - Static variable in class gov.nih.mipav.model.file.FileLSM: Bleached ROI shapes.
RECTANGLE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: Bleached ROI shapes.
RECTANGLE - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: DOCUMENT ME!
RECTANGLE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: rectangle sculpt
RECTANGLE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
RECTANGLE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in slice rectangle VOI mode
RECTANGLE3D - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
RECTANGLE3D - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in volume rectangle VOI mode
rectangular_conformal_map(double[][], int[][], int[]) - Method in class gov.nih.mipav.model.algorithms.RectangularConformalMap
RectangularConformalMap - Class in gov.nih.mipav.model.algorithms
RectangularConformalMap() - Constructor for class gov.nih.mipav.model.algorithms.RectangularConformalMap
RectangularConformalMap(String, String, int[]) - Constructor for class gov.nih.mipav.model.algorithms.RectangularConformalMap
rectButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Rectangle shape button.
rectButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Rectangle shape button.
rectCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
rectevalinv(SchwarzChristoffelMapping.scmap, double[][], double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rectIntersectsOrIsContainedInTri(Rectangle2D, double, double, double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: tests intersection or containment of rectangle and triangle.
rectmap(double[][], int[], double, double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rectplot(SchwarzChristoffelMapping.scmap, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rectpolygon - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
rectproject(double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rectqdata - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
RECURSION_SIZE_LIMIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
recursive_nmu() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
RECURSIVE_NMU - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
recursiveCalc(int, int) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Starts the Gaussian calculation.
recursiveCalc(int, int) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Starts the Gaussian calculation.
recursiveCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: private JButton srcBrowse;.
recv_count_list - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
recvDecodingTables() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
red - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
red - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
red - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Flags to indicate which color channels to process.
red - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Flags indicate which color channel to process.
red - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Flags indicate which color channel to process.
red - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Flags indicate which color channel to process.
red - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Flags indicate which color channel to process.
red - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
red - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Define colors.
red - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Basic color scheme.
red - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe colors.
red - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Border color, red, green, and blue components:
red - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
red - Variable in class gov.nih.mipav.view.ViewJFrameBase: Red channel value of the paint color.
RED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
RED - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be monochrome-red.
RED - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Red channel.
RED - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
RED - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
RED - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The red channel transfer function.
RED - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The red channel transfer function.
RED_CHANNEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: RED CHANNEL String
RED_FREE - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality Red Free.
RED_FREE - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality Red Free.
RED_OFFSET - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Red channel.
RED_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Red channel.
red_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: enables writing of RED, in case of activated JPWL
RED_WEIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
red1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
red1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
red1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
red2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
red2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
red2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
RedA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
redArray - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
redArray - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RedB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
redBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
redBorder - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Panel Border view.
redBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
redBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
redBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
redBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
redBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
redBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
redBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
redButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
redChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
redChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
redChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: either RGB channels or Grey Channel... for RGB:
redCheckbox - Variable in class gov.nih.mipav.view.components.JPanelColorChannels: DOCUMENT ME!
redCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
redCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
redCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to select Red image.
redCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: checkbox for turning on / off the red component of the color look-up table.
redCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Red channel histogram check box A, B.
redCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
redCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Red channel histogram check box A, B.
redCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
redGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
redirectSystemOut - Static variable in class gov.nih.mipav.view.LogStdStreams: True if System.Out is being redirected.
redistributePoints(ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
redLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
redLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Function that maps the red function of the LUT.
redLine - Variable in class gov.nih.mipav.model.structures.ModelRGB: Function that maps the red function of the LUT.
redMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
redMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
redMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
redMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
redMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
redMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
redMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
redMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
redNorm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
redo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
redo() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: VOI operation redo
redOffset - Variable in class gov.nih.mipav.model.file.FileLSM: Default ordering is red, green, blue.
redoImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
RedOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
RedOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
redoVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
redoVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
redoVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
redrawFrames() - Method in class gov.nih.mipav.view.JFrameHistogram: Redraws the histogram interface for the currently selected image.
redrawGraph(Rectangle) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Redraws the graph based on the new bounds.
redrawSurfaceTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Causes the texture representation of all the surface meshes to be recalculated.
redRequested - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
redRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
redRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
redShiftColors - Variable in class gov.nih.mipav.view.ColorWheel: array of r,g,b values after red shifting
redShiftColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: array of r,g,b values after red shifting *
redText - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
reduc(double[], double[], double, double, double, double, double[], double[], int[], double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
reduc(DoubleDouble[], DoubleDouble[], DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], int[], DoubleDouble[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
reduce(libdt.Mat[], libdt.Mat, int) - Method in class gov.nih.mipav.model.algorithms.libdt
reduce(libdt.Mat, libdt.Mat, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt
Reduce(float) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
reduce_order(AlgorithmGaussianMixtureModelEM.ClassSig, int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
reduce_order_first - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
reduce_order_S - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
reduce_order_Sig3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
reduce_order_SubSig3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
reduceB0Field(double[][], double, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
reduced_linear_system_solution_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver
reduced_parameters - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
reduced_program - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
ReducedLinearSystemAndSolution(double[], Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
ReduceDualA(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
reduceFactor - Variable in class gov.nih.mipav.model.file.FileJPEG2000
reduceStringLengthTo16(String) - Method in class gov.nih.mipav.model.file.FileDicom
reduceStringLengthTo16(String) - Method in class gov.nih.mipav.model.file.FileIO
reduceWithSplitting(libdt.DytexMix, libdt.HEMOptions) - Method in class gov.nih.mipav.model.algorithms.libdt
ReductionFactor() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the reduction factor of the training set that this model was
reductionKernel - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: OpenCL reduction kernel, calculates the max of and OpenCL buffer.
reductionKernel(CLContext, CLCommandQueue, int, int, CLBuffer<FloatBuffer>) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
redundant - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
redundant - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
redundantButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
redValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Weighting values for the red, green, and blue channels.
redValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Weighting values for the red, green, and blue channels.
redValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
redValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: set the values to the defaults -- based on a default of equal values.
redVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
redWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
reestimate(AlgorithmGaussianMixtureModelEM.ClassSig, int, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ref(delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
ref_cgau(double, double, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_cmor(double, double, int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_fbsp(double, double, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_gaus(double, double, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_mexh(double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_morl(double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_shan(double, double, int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
ref_units - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
refcnt - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Site
refcount - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
reference - Variable in class gov.nih.mipav.model.file.FileInfoZVI
REFERENCE_BLACK_WHITE - Static variable in class gov.nih.mipav.model.file.FileSVS
REFERENCE_BLACK_WHITE - Static variable in class gov.nih.mipav.model.file.FileTiff
reference_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
referenceBlueBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
referenceBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
ReferenceFrame() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the reference frame of the model.
referenceFrameNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
referenceGreenBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
referenceImage - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
referenceRedBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
ReferenceShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the reference shape where all texture sampling and comparison should be done.
ReferenceShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Calcs the mean shape of all aligned shapes and size it to mean size.
referenceSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
referenceSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch
referenceTagTable - Variable in class gov.nih.mipav.model.file.FileDicomTagTable: The reference table to check when a tag is not found in this table.
referenceYBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
referringPhys - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
referringPhysician - Variable in class gov.nih.mipav.model.file.FileGESigna4X
referringPhysician - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
refImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
refImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
refImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: model images
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.model.algorithms.SIFT3D: The inputImage will be registered to this reference image.
refImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
refImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
refImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
refImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
RefImageHeight() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the height of the reference image.
refImageNo - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Indicates the first slice used as a reference slice, if regToAdjImage is true.
refImageNo - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Indicates the first volume used as a reference volume, if mode == ADJACENT.
refImageNo - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Indicates the first slice used as a reference slice, if regToAdjImage is true.
refImageNo - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Indicates the first volume used as a reference volume, if mode == ADJACENT.
refImageNum - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
refImageNum - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
refImageNum - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
refImageNum - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
refImageNumText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
refImageNumText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
refImageNumText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: user-input for the B0 sub-volume number in the 4D DWI image
refImageNumText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Text fields for entering the input images:
refImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
refImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
RefImageWidth() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the width of the reference image.
refImg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 650 Reference image field.
REFINE - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
refine_clusters(AlgorithmGaussianMixtureModelEM.ClassSig, int, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
refine_Hist(SIFT3D.Hist) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
refine1D(double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
refine1D_1(double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
refine1D_2(double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
refine3D(int, int, int, double[], double[], double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
refineCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
refineControlPointLattice() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
refineControlPointLattice(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
refinedLatticeCoefficients - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
refinedLatticeCoefficients - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
RefineFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
RefineFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RefineFunction
RefineInitialized - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
RefineSteps - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t
refLabel1 - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
refLabel1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
refLabel2 - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
refLabel2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
refLabel3 - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: labels *
refLabel3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
ReflectCornerIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
ReflectEdgeIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square
reflectedLightHalogenLampMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectedLightHalogenLampVoltage - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectedLightShutter - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
reflection - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
reflector - Variable in class gov.nih.mipav.model.file.FileInfoCZI
reflector - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorID - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPosition0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPosition3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPositionChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPositionChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPositionChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
reflectorPositionChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
refline - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
refline - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
REFLN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
refMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: number of VOIs for reference slice
refMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
refMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
REFMARK - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
REFMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
REFMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: reference marker type.
refMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
refMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
refMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
refMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
RefMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the reference mesh.
refocusingPulseType - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
refPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
refPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
refparams_vecgsm(double[][][], double[][], Vector<double[][]>) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
refPhy - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 212 - 33 bytes Referring Physician.
refPtsLocation - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
refractiveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: The index of refraction of the sample:
refresh() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
refresh() - Method in class gov.nih.mipav.plugins.ManifestFile: Rereads the manifest to load any changes, whether or not any changes have been made.
refresh() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator
refreshButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
refreshCc() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
refreshControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Refresh the light control panel.
refreshControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Refresh the light control panel.
refreshImagePaint(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Refreshes the displayed paint mask.
refreshImagePaint(ModelImage, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: Refreshes the displayed paint mask.
refreshImagePaint(ModelImage, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Refreshes the displayed paint mask.
refreshImagePaint(ModelImage, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: refresh the displayed mask.
refreshLabelDisplay() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Reinstantiates the labels for redisplay.
refreshLighting() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Repaints the parent frame with the correct lighting.
refreshLighting() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Repaints the parent frame with the correct lighting.
refreshLighting() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
refreshPaintBox(boolean, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
refreshText() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Refreshes the text display.
refreshVOIList(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Refreshes the list of available and selected VOIs.
refrInxLensMedium - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
refrInxLensMedium - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
refrInxMedium - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
refrInxMedium - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
RefShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the reference shape.
RefShapeHeight() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the height of the reference shape.
RefShapeWidth() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Returns the width of the reference shape.
refSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
refSliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
RefTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
refVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeight - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: This gives weights for the reference image - higher weights mean a greater impact in that area on the registration.
refWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
refWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
refWeightImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
refWgtImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
refWgtImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
reg - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
reg - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
Reg_SIFT3D() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D
reg2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
reg25 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
reg25E - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
reg2E - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
reg3 - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: handle to AlgorithmRegOAR3D
reg3 - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
reg3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
reg3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
reg35 - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: handle to AlgorithmRegOAR35D
reg35 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
reg35 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: DOCUMENT ME!
reg35E - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
reg3D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Algorithm to run from this dialog.
reg3E - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
reg3E - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
regButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
regButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to enable the showing of a small portion of image b near the mouse cursor.
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
regCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
regComponent - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

false = apply algorithm only to VOI regions.
regComponent - Variable in class gov.nih.mipav.view.JFrameHistogram: false = apply algorithm only to VOI regions.
regComponent - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Not used now.
regComponent - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
regComponent - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
reGenerateEllipsoidMesh(int, float, boolean, Point3f, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Tessellate a unit sphere centered at the origin.
reGenerateSphereMesh(int, Point3f, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Tessellate a unit sphere centered at the origin.
regFrame(Frame) - Method in class gov.nih.mipav.view.ViewUserInterface: Method that registers an image frame by putting it in the image frame vector and does NOT loads controls.
regImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
regint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
region - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
region - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.REGION
REGION - gov.nih.mipav.view.dialogs.JDialogCaptureScreen.WindowProperties: Selected region of the window
REGION() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.REGION
regionadjacency(int[][], int) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
regionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: DOCUMENT ME!
regionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Button for selecting region mode.
regionCount - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: or if the source image is to be replaced.
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: or if the source image is to be replaced.
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: true means apply algorithm to whole image, false means to just the VOI.
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: or if the source image is to be replaced.
regionFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: or if the source image is to be replaced.
regionFlag - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
regionGrow(short, short, short, float, float, float, ModelImage, String, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
regionGrow(short, short, short, float, float, float, String, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
regionGrow(short, short, short, float, ModelImage, String, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
regionGrow(short, short, short, float, String, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
regionGrow(ModelImage, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: Grows a region based on a starting point supplied.
regionGrow(ModelImage, Vector3f, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: Grows a region based on a starting point supplied.
regionGrow(String) - Method in interface gov.nih.mipav.view.PaintGrowListener: Grows a region based on a starting supplied.
regionGrow(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
regionGrow2D(BitSet, Point, float, boolean, boolean, RegionGrowDialog, float, float, float, float, float, float, int, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: 2D flood fill for color images that forms a bitset(boolean) mask.
regionGrow2D(BitSet, Point, float, boolean, boolean, RegionGrowDialog, float, float, int, float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: 2D flood fill that forms a bitset(boolean) mask.
regionGrow3D(BitSet, Point3D, float, boolean, boolean, RegionGrowDialog, float, float, float, float, float, float, int, float, int, CubeBounds) - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: 3D flood fill for color images that forms a bitset(boolean) mask.
regionGrow3D(BitSet, Point3D, float, boolean, boolean, RegionGrowDialog, float, float, int, float, boolean, int, CubeBounds) - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: 3D flood fill that forms a bitset(boolean) mask.
regionGrowAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
regionGrowColor(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Grows a region based on a starting supplied.
RegionGrowDialog - Interface in gov.nih.mipav.view.dialogs: Interface for dialogs which gather region grow information and then update a list of listeners who want to know about the region grow.
regionGrowDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: parameters.
regionIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
regionLinesDisplay - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
regionLinesDisplay - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
regionLinesDisplayButton - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
regionList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
regionList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
RegionList(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
regionPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
regionPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
regionPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
regionPattern - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
RegionPattern - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
RegionPattern() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
regionPointStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The stack of voxels in the image that we should try to grow to.
regionPointStackRatio - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Used to initialize the stack size when finding the largest segmented region (i.e. the brain).
regionQueryM(DBSCANClusteringSegment.SP, DBSCANClusteringSegment.AmAl, int, double) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
regionsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: DOCUMENT ME!
regIsoDiffusionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
regisotropicDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
regisotropicDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
regisotropicDiffusionAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Anisotropic Diffusion filter.
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
regisotropicDiffusionFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
regisotropicDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
regisotropicDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
regisotropicDiffusionImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: DOCUMENT ME!
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
register - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
register - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
register() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning: Adds this ContourPlot.CoordSysPanning as MouseListener and MouseMotionListener to the associated canvas.
register() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom: Adds this ContourPlot.CoordSysScrollZoom as MouseWheelListener to the associated canvas.
register_SIFT3D(SIFT3D.Reg_SIFT3D, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
register25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
register2Dor3D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: DOCUMENT ME!
registerAndSaveVolumes(File) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
registerAtCurrentLevel(int[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
registerChanges() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Connects the file selection of each file selection panel to the appropriate list and ensures that it has the correct property name. if a list doesn't exist (if a subclass calls this method, when it didn't get created), the action will be ignored.
registeredB0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: B0 volume extracted from the DWI series.
registeredBaseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
registeredDicomB0VolumePathParentFolder - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registered B0 parent folder
registeredDWI - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: DWI image series that has been registered within series to the B0 volume.
RegisteredDWIPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
registeredDWIText - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
registeredNames - Variable in class gov.nih.mipav.view.ImageRegistryMonitor: DOCUMENT ME!
registeredResults - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm
registeredSourceImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: registered atlas image
registeredSrcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
registeredStudyName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: study name for registered data set
registerFrame(Frame) - Method in class gov.nih.mipav.model.structures.ModelHistogram: Registers the image Frame.
registerFrame(Frame) - Method in class gov.nih.mipav.view.ViewUserInterface: Method that registers an image frame by adding it to the vector and loads controls.
registerImage(ModelImage) - Method in class gov.nih.mipav.view.ViewUserInterface: Register image model by adding it to the image hashtable.
registerImage(String, ModelImage) - Method in class gov.nih.mipav.view.ViewUserInterface: Register image model by adding it to the image hashtable.
registerImages() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
registerImages() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: registerImages - Registers the reference and tile images based on the how the user positions the images with the mouse.
registerImages(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Registers the atlas image to the input target image:
registerImageToTarget(int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: compute the image position given the target for a given level l performs only one iteration
registerImageToTarget2D(int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: compute the image position given the target for a given level l performs only one iteration
registerListener(SpaceNavigatorListener) - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
registerSlice(int, int, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
registerTo - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
registerTo - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
registerTo - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
registerTo - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
registerTrueTypeFont(URL) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider: Loads a true type font (ttf) from the specified source and registers it with the local GraphicsEnvironment.
registerVOI(VOI) - Method in class gov.nih.mipav.model.structures.ModelImage: Method that register an VOI to this image.
RegistrationDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RegistrationDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RegistrationDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RegistrationMeasure - Class in gov.nih.mipav.model.algorithms.registration: This is an abstract class used to compute the measure of registration between the specified target image and a registered source image.
RegistrationMeasure() - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure: Constructor.
RegistrationMeasureCorrelationRatio - Class in gov.nih.mipav.model.algorithms.registration: Concrete implementation of the RegistrationMeasure class based on the correlation ratio computed as follows:
RegistrationMeasureCorrelationRatio() - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Constructor which sets up for a default number of bins.
RegistrationMeasureCorrelationRatio(int) - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio: Constructor.
RegistrationMeasureLeastSquares - Class in gov.nih.mipav.model.algorithms.registration: Concrete implementation of the RegistrationMeasure class based on sum of the squared differences between the target image and the registered source image.
RegistrationMeasureLeastSquares() - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares: Constructor.
RegistrationMeasureNormalizedMutualInformation - Class in gov.nih.mipav.model.algorithms.registration: Concrete implementation of the RegistrationMeasure class based on the normalized mutual information computed as follows:
RegistrationMeasureNormalizedMutualInformation() - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Constructor which sets up for a default number of bins.
RegistrationMeasureNormalizedMutualInformation(int) - Constructor for class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation: Constructor.
RegistrationMovie(String, String, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Writes a movie file containing all shapes from a directory warped to their mean shape.
RegistrationMovie(String, String, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Writes a movie file containing all shapes from a directory warped to their mean shape.
RegistrationMovie(String, Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Generates a movie of the registered training set.
RegistrationMovie(String, Vector<CDVector>, CAAMReferenceFrame) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Writes a movie file containing a set of textures warped to their mean shape.
registrationSettingsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: button to launch the registration settings
RegistrationTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RegistrationTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RegistrationTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
registrationToolBar - Variable in class gov.nih.mipav.view.ViewControlsImage: Registration toolbar.
RegistrationUtilities - Class in gov.nih.mipav.model.algorithms.registration.vabra
RegistrationUtilities() - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
RegistrationUtilities.IndexedFloat - Class in gov.nih.mipav.model.algorithms.registration.vabra
RegistrationUtilities.InterpolationType - Class in gov.nih.mipav.model.algorithms.registration.vabra
regopt - Variable in class gov.nih.mipav.model.algorithms.libdt.CovMatrix: < type of covariance matrix
regopt - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions
regopt - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions
regOptions - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: handle to JDialogDTICreateListFileRegOAR35DOptions
RegPatPos - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
regroup(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
regSampled2Classic - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
regToAdjImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: If true use adjacent image for registration.
regToAdjImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: If true use adjacent image for registration.
regToAdjImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: If true use adjacent image for registration.
regToAdjImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: If true use adjacent image for registration.
regType - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
regType - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
regType - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
regTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
regular - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: I think it means data has uniform spacing (resolutions).
regular - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: I think it means data has uniform spacing (resolutions).
regular - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
REGULAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
REGULAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
REGULAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
REGULAR_PROBE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The regular type probe, which is in gray color.
regularBurn - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Regular burning point reference that represents the regular probe ablation type.
REGULARBURN - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Define the regular burn type value.
regularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
regularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
regularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
RegularEdgePattern - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
RegularEdgePattern() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePattern
RegularEdgePatternTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees
RegularEdgePatternTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePatternTest
regularization - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
regularization - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
RegularizationCheckingLinearSolver(int, double[], String, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver
regularize(libdt.CovMatrix) - Method in class gov.nih.mipav.model.algorithms.libdt
regularize(libdt.Dytex, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
regularizedGammaP - Variable in class gov.nih.mipav.model.algorithms.Gamma
regularizer - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics: < Objective function value.
REGULARLY_SAMPLED_SECOND_ORDER_CLASSIC - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
regularProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Reference to the regular probe geometry structures.
regularProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: The root transform group the the regular probe.
RegularProbe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: RegualorProbe
RegularProbe() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Constructor to build the regular probe geometry shape.
regularProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Regular probe branch group.
regV - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
regval - Variable in class gov.nih.mipav.model.algorithms.libdt.CovMatrix: < type of regularization to be used
reinit_interval(TURN_REP, TURN_REP) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
reinit_vals(TURN_REP, TURN_REP, int, int, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
reinitialization(double[], double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
reInitialize(VolumeImage, VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
reIntialize() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Reinitialize when secondStageErosion has been performed so that the mask will match the eroded image.
REITHETA - gov.nih.mipav.view.Preferences.ComplexDisplay: Displays complex images in r*e^(i*theta) format
REJECT - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
Rel2Abs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Convert shape from relative coordinates to abs coordinates
Rel2Abs(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Converts all shapes with relative coordinates to absolute.
Rel2Abs(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from relative to absolute.
Rel2Abs(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
RELATIVE_AVERAGE_SPECTRAL_ERROR - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
relative_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary
relative_precision_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
relative_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
relativeConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: relative convergence constant Used to test for convergence by reduction in objective function being less than relativeConvergence squared.
relativeConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: relative convergence constant Used to test for convergence by reduction in objective function being less than relativeConvergence squared.
relativeImageSlicesDirPath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: relative path for slices dir for outputting to path file
relativeWindowLevelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
RELAX - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
relax_snode(int, int[], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
relaxEdges(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: This function determines the shortest path from the start vertex through the input vertex to the vertices that neighbor the input vertex.
relaxEdges(TriMesh, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: This function determines the shortest path from the start vertex through the input vertex to the vertices that neighbor the input vertex.
reldst(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
release() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan: Release system resources.
release() - Method in class gov.nih.mipav.model.algorithms.libdt.Mat
Release() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
ReleasedSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
releaseLock() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Releases the lock so that other proceses can read or write the data.
releaseRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Release request.
releaseRSP - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Release response.
releaseShaderEffect(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
releaseShared() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
ReleaseVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Release the Textures containing the volume data.
releps() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
releps() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
relEps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
relEps - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: relative accuracy requested.
relerr - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
relerr - Variable in class gov.nih.mipav.model.algorithms.ODE
relerr - Variable in class gov.nih.mipav.model.algorithms.ODEEP
relFocusPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
relFocusPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
rell - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
Reload(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Reload the current shader programs from disk, compile and parse and send to the GPU.
reloadComplexImages(String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Evaluates whether the user preferences which control complex image loading have changed in a way that requires reloading of all complex images
reloadInputData() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: Accessor that returns whether or not to reload the volume data.
reloadInputData(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: set the m_bReloadInput member variable. this is used to force the renderer to use new volume data.
reloadPoints() - Method in class gov.nih.mipav.model.structures.VOIBase: Reloads points in this array for speed purposes.
reloadPoints(float[], float[]) - Method in class gov.nih.mipav.model.structures.VOIContour: Reloads points in this array for speed purposes.
reloadRows() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: reloadRows.
reloadRows(String, String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: The purpose of this method is to re-parse the DICOM files to refresh the table data.
reloadShaders() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Called by the ApplicationGUI.
ReloadVolumeShader(Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Reloads the VolumeShaderEffect current shader program.
relstp - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
reltol - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
remains - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
remains - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
reMap - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Flag indicating whether of not to remap the data.
reMap - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Flag indicating whether of not to remap the data.
remapCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: re-map checkbox
remapConstA - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
remapGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
remapGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
remapHighestValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat
remapHighestValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
remapHighestValue - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
remapHighestValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
remapMode - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: boolean for remap *
remapMode - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: boolean for remap
remapMode - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
remapMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: boolean for remap *
remappedLUT - Variable in class gov.nih.mipav.model.structures.ModelLUT: DOCUMENT ME!
reMappedSrc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: When true the source image was remapped
reMappedTargetAtlas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: When true the target image was remapped (used for the target image when an atlas image is present)
REMEMBER - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
RememberingCallback(double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback
rememberPaintBrushSize() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Remembers the current paint brush size so that it can be reset later.
ReminderThread - Class in gov.nih.mipav.model.structures: DOCUMENT ME!
ReminderThread(long) - Constructor for class gov.nih.mipav.model.structures.ReminderThread: Creates a new ReminderThread object.
remoteAETitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: The remote Application Entity Title.
remoteAETitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: The remote servers AE title.
remove - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem: DOCUMENT ME!
remove - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: when true, remove the output
remove - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: List of slices to remove from source image.
remove - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: List of slices to remove from source image.
remove - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
remove() - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap: Remove the root of the heap.
remove() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: The only remove operation from a heap occurs at the root of the heap.
remove(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Remove the specified element from the set.
remove(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Remove the specified element from the set.
remove(int) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
remove(int) - Method in class gov.nih.mipav.model.structures.VOIVector: Overides Vector.remove().
remove(int) - Method in class gov.nih.mipav.view.JScrollMenu
remove(int) - Method in class gov.nih.mipav.view.JScrollPopupMenu
remove(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Remove the specified element from the set.
remove(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Remove the specified element from the set.
remove(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Removes node of given position and cost.
remove(int, float) - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Removes node of given position and cost.
remove(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
remove(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
remove(Component) - Method in class gov.nih.mipav.view.JScrollMenu
remove(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
remove(String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
remove(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable: Remove a parameter from the table.
remove(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
remove(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
remove(JMenuItem) - Method in class gov.nih.mipav.view.JScrollMenu
Remove(LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
Remove(LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
Remove(Vector<T>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
Remove(T) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
REMOVE - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
REMOVE - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
remove_blanks(RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT: ------------------------------------------------------------------
remove_line(RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SIFT: ------------------------------------------------------------------
REMOVE_T - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Remove t dimension.
REMOVE_X - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Remove x dimension.
REMOVE_Y - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Remove y dimension.
REMOVE_Z - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Remove z dimension.
remove3DVOI(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
removeActionListener(ContourPlot.CoordinateViewListener) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Removes the specified ContourPlot.CoordinateViewListener from this renderer.
removeActionListener(ActionListener) - Method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
removeActiveImageControl() - Method in class gov.nih.mipav.view.ViewControlsImage: Removes the controls to the display of which image is "active" in the frame when imageB is not available.
removeActivePt() - Method in class gov.nih.mipav.model.structures.VOIContour: Forget about the last clicked (active) point in the contour.
removeAlgorithm(Runnable) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Method for removing the algorithm from the frame displayed as well as removing the listener attached to it
removeAll() - Method in class gov.nih.mipav.model.structures.TransferFunction: Removes all points from the funcitons.
removeAll() - Method in class gov.nih.mipav.view.JScrollMenu
removeAll(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
REMOVEALL - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
removeAllBurn() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Remove all the burning point geometry shapes in the volume.
removeAllBurnCenters() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Remove all the burning point centers.
removeAllBurns() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Remove all the burns in the treatment list.
removeAllButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Remove all items in the item list.
removeAllButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Remove all items in the item list.
removeAllElements() - Method in class gov.nih.mipav.model.structures.IntVector: Removes all elements of the array.
removeAllElements() - Method in class gov.nih.mipav.model.structures.VOIVector: DOCUMENT ME!
removeAllFromList() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Removes all of the parameters from the list.
removeAllGeodesic(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Removes all geodesic curves for the given surface.
removeAllGeodesic(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Removes all geodesic curves for the given surface.
removeAllGeodesic(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Removes all geodesic components from the given surface.
RemoveAllGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Removes all geodesic components from the given surface.
removeAllItems() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Removes all the items on the recording list.
removeAllItems() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Removes all the items on the recording list.
removeAllObjects(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: object removal algorithm.
removeAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
removeAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
removeAllRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for removing the face / skull.
removeAllRows() - Method in class gov.nih.mipav.model.structures.SortingTableModel: DOCUMENT ME!
removeAllSegments() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Removes all segments of this object.
removeAllSurfaces() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
removeAllTriangles() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles: Removes all TriangleDetails from this collection.
removeAllVectorListeners() - Method in class gov.nih.mipav.model.structures.VOIVector
removeAllVOIListeners() - Method in class gov.nih.mipav.model.structures.VOI
removeAloneMenu(JMenuBar) - Method in class gov.nih.mipav.view.ViewUserInterface: Removes the stand-alone menu from the user interface.
removeAt(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Remove the element from the set in the specified location.
removeAt(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Remove the element from the set in the specified location.
removeAt(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Remove the element from the set in the specified location.
removeAt(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Remove the element from the set in the specified location.
removeBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
removeBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
removeBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Detaches the slice frame on the slice for the given orientation.
removeBranch(BranchGroup, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Removes a BranchGroup to the display.
removeBranch(BranchGroup, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender -- removes a BranchGroup to the main Display.
removeBurn() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: The action taken when the Remove button is clicked in the list box.
removeBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Remove a burn from the treatment list.
removeBurn(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Remove a burn from the treatment list.
removeBurnCenter(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Remove the burning center element.
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
removeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
removeButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Remove the selected item in the item list.
removeButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Remove the selected item in the item list.
removeButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
removeButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
removeButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
removeCellEditorListener(CellEditorListener) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
removeChars(String) - Static method in class gov.nih.mipav.model.file.FileInterfile: Removes white space and exclamation marks.
removeClickedFunctionPoint() - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Remove the point of the LUT transfer function which the mouse is hovering over (determined by mouseMotion).
removeClickedFunctionPoint() - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
removeClickedFunctionPoint() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Remove the point of the LUT transfer function which the mouse is hovering over (determined by mouseMotion).
removeClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Removes the clip slices.
removeClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on arbitrary clipping plane slice.
removeClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: remove the static clipping plane box frame.
removeClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: remove the static inverse clipping plane box frame.
removeClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice x.
removeClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice -x.
removeClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice y.
removeClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice -y.
removeClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice z.
removeClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Detaches the slice frame on clipping plane slice -z.
removeClipVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
removeClipVOICheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
removeComment(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile
removeComponent(int, int[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Extract a connected component from the mesh and remove all the triangles of the component from the mesh.
removeComponentListener() - Method in class gov.nih.mipav.view.ViewJFrameGraph
removeComponentListener() - Method in class gov.nih.mipav.view.ViewJFrameImage
removeContourFromOtherOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: User central gland contours projection to remove the extra interpolated VOIs contours at the apex and base.
removeContourFromOtherOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: User central gland contours projection to remove the extra interpolated VOIs contours at the apex and base.
removeControls() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: remove controls
removeControls() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
removeControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Required by the parent super class, do nothing.
removeControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: remove controls
removeControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Does nothing.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Does nothing.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameBase: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Does nothing.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Does nothing.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.Abstract and must be extended.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.Abstract and must be extended.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameImage: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Placeholder.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeControls() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
removeCoordinateChangeListener(CoordinateChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Remove a coordinate change listener from this frame's list.
removeCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Detach cubic control branch group.
removeCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Detach cubic control branch group.
removeCurrentTab - Variable in class gov.nih.mipav.view.ViewJFrameMessage: DOCUMENT ME!
removeCurve(VOIBase) - Method in class gov.nih.mipav.model.structures.VOI: Clears VOI of all curves at a slice.
removeCurves() - Method in class gov.nih.mipav.model.structures.VOI: Clears VOI of all curves.
removeCurves(int) - Method in class gov.nih.mipav.model.structures.VOI: Deprecated.
REMOVED_INTENSITY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Eventually won't be necessary.
removed_parameter_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem
removedCurve(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener: handles to the VOI being removed from the Vector.
removedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter: We are not interested in removing Curves, so this method is empty.
removedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter: We are not interested in removing Curves, so this method is empty.
removedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter: We are not interested in removing Curves, so this method is empty.
removedCurve(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
RemoveDiagonal() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
removeDim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Dimension to be removed.
removeDim - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
removedSlices - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: every false value in the array corresponds to a slice within the movie passed in. true values represent removed slices
removeDuplicateKeypoints(Vector<SIFTImageSimilarity.KeyPoint>) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
removedVOI(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener: handles to the VOI being removed from the Vector.
removedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: resets the volumes list to the current VOIVector. removes the highlighter from the removed VOI.
removedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: resets the volumes list to the current VOIVector. removes the highlighter from the removed VOI.
removedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: resets the volumes list to the current VOIVector. removes the highlighter from the removed VOI.
removedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
removeElement(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
removeElementAt(int) - Method in class gov.nih.mipav.model.structures.IntVector: Removes element at index.
removeElementAt(int) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
removeElementAt(int) - Method in class gov.nih.mipav.model.structures.VOIVector: Overides Vector.remove().
removeEmptyDirs() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
removeEnhancedDicomInfo(FileInfoDicom, FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileIO
removeEntry(Class) - Method in class gov.nih.mipav.plugins.ManifestFile: Removes class c and its dependents from the manifest, does in fact write to the file.
RemoveExt(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Removes the extension of a file name.
removeFaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for removing just the face.
removeFiles(ArrayList<File>) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
RemoveFixedBlocks(Vector<double[]>, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
removeFromBeginning() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
removeFromFile(Class) - Method in class gov.nih.mipav.plugins.ManifestFile: Helper method for removing c from the manifest file on the file system.
removeFromImageList(String, String[]) - Method in class gov.nih.mipav.model.file.FileIO
removeFromModelClip(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Remove the branch group passed in.
removeFromPane() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Removes the components from this given container from the frame
removeGeodesic(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Remove the specific geodesic curves from the given surface.
removeGeodesic(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Remove the specific geodesic curves from the given surface.
removeGeodesic(TriMesh, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Removes the specific geodesic component from the given surface.
RemoveGeodesic(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Removes the specific geodesic component from the given surface.
removeGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Add the gradient magnitude hitogram to the opacity control panel.
removeGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Add the gradient magnitude hitogram to the opacity control panel.
removeGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
removeGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Add the gradient magnitude hitogram to the opacity control panel.
RemoveGPU() - Static method in class gov.nih.mipav.util.MipavInitGPU
removeHistoLUTb() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Removes the tabbed pane for the histogram of image B.
removeHistoLUTb() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Removes the tabbed pane for the histogram of image B.
removeHistoLUTb() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Removes the tabbed pane for the histogram of image B.
removeHistoRGBb() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Removes the tabbed pane for the histogram of image B.
removeHistoRGBb() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Removes the tabbed pane for the histogram of image B.
removeImageDisplayListener(ViewImageUpdateInterface) - Method in class gov.nih.mipav.model.structures.ModelImage: Remove a listener from the class.
removeImageRegistryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: removes the change listener.
removeImageVariable(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Removes an image variable and its image name from the table.
removeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
removeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
removeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
removeIndicator() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Detach all the detection sphere branches.
removeIntensityLock(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Removes an intensity value from the intensityLockVector.
removeItem(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Remove the specified annotation item from the list.
removeItem(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Remove the specified annotation item from the list.
removeItemToRender(T) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer: Removes an item from this renderer's ContourPlot.GenericRenderer.itemsToRender list.
removeJarContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
removeKeyListener() - Method in class gov.nih.mipav.view.ViewJFrameImage
removeLastElement() - Method in class gov.nih.mipav.model.structures.IntVector: Removes last element is array.
removeLayoutComponent(Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
RemoveLeadingZeros(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
removeLineArray(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called from the JDialogDTIInput.
removeLines(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
removeList - Variable in class gov.nih.mipav.view.JPanelChecklist: notice that for the next two lists, ith entry on one corresponds to the ith entry on the other. the entire list of choices possible.
removeListener(AlgorithmInterface) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Remove a listener from the class.
removeListeners() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
removeListeners() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
removeMatrix(Object) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Safe method for removing matrices from the image
removeMemoryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: removes the change listener.
removeModelDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
removeMouseListener() - Method in class gov.nih.mipav.view.ViewJFrameImage
removeMouseMotionListener() - Method in class gov.nih.mipav.view.ViewJFrameImage
RemoveNeighbor(LODMesh.Triangle, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
removeNode(int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
removeNode(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
RemoveNode(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
removeObject(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: object removal algorithm.
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
removeOriginal - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
removeOriginalCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
removePadding(ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Remove the padding slices from the beginning and end of an image.
removeParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for removing parameters.
removeParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Removes the parameter with the given name from the hashtable.
RemoveParameterBlock(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
removePoint(int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Removes a point in the function at the specified index.
RemovePoint(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Removes the i-th point from the shape.
removePointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
removePoints() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Remove all points drawn on the mesh, sphere, and plane:
removePoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Remove all points drawn on the mesh, sphere, and plane:
removePolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Removes the fiber bundle from the GPUVolumeRender and JPanelSurface.
removePolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Remove polyline from the render
removePolyline(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Removes the specified polyline tract group.
removePolyline(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Remove the polyline from the volume DTI display.
removePolyline(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Removes the specified polyline tract group.
removePrivateSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize private tags that may appear in sequence tags.
removePrivateSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize private tags that may appear in sequence tags.
removePrivateSequenceTagsWhite(FileDicomKey[], Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.model.file.FileInfoDicom
removePrivateSequenceTagsWhite(FileDicomKey[], Vector<FileDicomSQItem>) - Method in class gov.nih.mipav.model.structures.ModelImage
removePrivateTags(FileDicomKey[]) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to remove private tags from the file.
removePrivateTags(FileDicomKey[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to remove private tags from the file.
removePrivateTagsWhite(FileDicomKey[]) - Method in class gov.nih.mipav.model.file.FileInfoDicom
removePrivateTagsWhite(FileDicomKey[]) - Method in class gov.nih.mipav.model.structures.ModelImage
removeProbeLine() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Remove the red line showing where the probe will pass through.
removeProbingPath() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: During mouse release, remove the probing path and clear the probe color mask.
removeProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Removes the ChangeListener from the FileBase object.
removeProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.file.FileBase: Removes the ChangeListener from the FileBase object.
removeProperty(String) - Static method in class gov.nih.mipav.view.Preferences: Removes the property key from the MIPAV property list.
removePSet(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Removes a specific Parameter Set using it's description.
removeRange(int, int) - Method in class gov.nih.mipav.model.structures.VOIVector: Overides Vector.removeRange().
removeReference(String) - Method in class gov.nih.mipav.view.ViewJComponentTriImage: Remove a talairach / ACPC reference point.
removeRepeatedElements(JList) - Method in class gov.nih.mipav.view.JPanelListController: Removes all repeated elements in the given list.
RemoveResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
RemoveResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
removeScriptRecordingListener(ScriptRecordingListener) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Removes a listener from the recorder.
removeSegment(byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Removes all segments from the collection having the specified type.
removeSegment(MetadataExtractor.JpegSegmentType) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Removes all segments from the collection having the specified type.
removeSegmentOccurrence(byte, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Removes a specified instance of a segment's data from the collection.
removeSegmentOccurrence(MetadataExtractor.JpegSegmentType, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Removes a specified instance of a segment's data from the collection.
removeSelected() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Method removed selected items from the file list.
removeSelectedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: remove button
removeSelectedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: remove button
removeSelectedImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: label for removing selected images
removeSelectedImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: label for removing selected images
removeSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
removeShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: button for removing shortcuts.
removeShortcut(String) - Static method in class gov.nih.mipav.view.Preferences: Removes a shortcut from the table.
removeSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
removeSmallRegions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
removeSmallRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
removeSmallRegionsCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
removeStampSecondaryCapture() - Method in class gov.nih.mipav.model.file.FileInfoDicom: In anonymization cases it may be necessary to hide the fact that MIPAV has processed this image (to remove any NIH affiliation).
removeSubjectVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
removeSubjectVOICheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
removeSubscriber(Object) - Method in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
removeSubscriber(Object) - Method in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
removeSurface - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for removing surfaces.
removeSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Remove the surface from the volume render.
removeSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Remove the selected surfaces.
removeSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Removes a surface from the image's surface list.
removeSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
removeSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Remove the given surface from the render display list.
removeSurface(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Sets blending between imageA and imageB.
removeSurface(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Remove the specified surface subtree from the scene graph.
removeSurfaceMask(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Removes the surface mask from this image.
removeSurfaceMask(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Delete the surface mask, using the name of the mask as reference.
removeSurfaceMasks() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Returns the array of BitSet masks for backup.
removeSurfaces(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The action taken when the Remove button is clicked in the list box.
removeTab(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Removes the Tab associated with the given title (will not allow the removal of DEBUG or DATA tabs.
removeTag(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Remove a tag from this tag table (does not affect reference table, if this is a non-reference table).
removeTag(String) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Remove a tag from this tag table (does not affect reference table, if this is a non-reference table).
removeTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Remove triangle from the mesh.
removeTriangle(ModelSurfaceTopology.Triangle) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: An override of the ModelSurfaceTopology member function.
removeTriangle(ModelSurfaceTopology.Triangle) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology: Convenience function for removing triangles from the mesh.
removeTSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
removeUnusedVertices(TriMesh) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
removeUnusedVertices(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
removeUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener
removeUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
removeUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
removeVariable(String) - Method in class gov.nih.mipav.model.scripting.VariableTable: Removes a variable and its value from the variable table.
removeVectorListener(VOIVectorListener) - Method in class gov.nih.mipav.model.structures.VOIVector: removes the update listener.
RemoveVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
RemoveVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
removeVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Removes a voi from the image's VOI list.
removeVOIListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI: removes the update listener.
removeVOIManager(VOIManager) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
removeVOIsInDicomSpace(int, float, ModelImage, Vector<Vector3f>, Vector<Vector3f>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Remove the extra VOIs contours in Dicom space.
removeVOIsInDicomSpace(int, float, ModelImage, Vector<Vector3f>, Vector<Vector3f>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Remove the extra VOIs contours in Dicom space.
removeVOIUpdateListener() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
removeVOIUpdateListener(UpdateVOISelectionListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
removeVOIUpdateListener(UpdateVOISelectionListener) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Removes the UpdateVOISelectionListener from the list.
removeWall(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
RemoveWalls(AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
removeWhiteSpace(String) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
removeWindowListener() - Method in class gov.nih.mipav.view.ViewJFrameImage
renameLattice(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
renameLatticeOnLoad(ModelImage, VOIVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
renBufferA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Buffer used to store ARGB images of the image presently being displayed.
renBufferB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: DOCUMENT ME!
render() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
render(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
Render() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Render the scene.
Render() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Render the scene-graph.
Render(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Render the display list objects without the raycast volume.
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Render the object.
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Render the object.
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Render the object.
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Render the object.
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
Render(Renderer, Culler, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
Render(Renderer, Culler, SurfaceClipEffect[], int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Render the object.
renderAnnotationToTexture(VOIText) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
renderBase - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D: Render base.
renderCheckBox(JCheckBox, GridBagLayout, GridBagConstraints, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This method renders the checkbox
renderer - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
renderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
Renderer - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A ray tracer for 3D images.
Renderer(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: The constructor for the renderer.
rendererConfigured(VolumeTriPlanarRenderBase) - Method in interface gov.nih.mipav.view.renderer.WildMagic.RendererListener
rendererGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Renderer mode user-interface panel
RendererImageData - Class in gov.nih.mipav.view.renderer.J3D.volumeview: Storage of values for a 3D volume used by the volume renderers.
RendererImageData(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData: Constructor to setup renderer image data associated with specified 3D volume.
RendererInterfaceColor - Interface in gov.nih.mipav.view.renderer.J3D.volumeview: An interface to be used to color-based Renderer implementations.
RendererInterfaceIntensity - Interface in gov.nih.mipav.view.renderer.J3D.volumeview: An interface to be used to intensity-based Renderer implementations.
RendererListener - Interface in gov.nih.mipav.view.renderer.WildMagic
rendererLUT - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
RendererMapColor - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A helper class to map RGB color image values to an intensity value.
RendererMapColor() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor: Constructor.
RendererMapIntensity - Class in gov.nih.mipav.view.renderer.J3D.volumeview: A helper class to map image values to RBB colors.
RendererMapIntensity(ModelLUT) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapIntensity: Constructor.
rendererProgressBar - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

A reference to the volume renderer frame's progress bar.
rendererProgressBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: A local reference to the volume renderer frame's progress bar.
rendererProgressBar - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The small bar on the top right corner the volume view frame.
rendererProgressBar - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

A reference to the volume renderer frame's progress bar.
rendererProgressBar - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The small bar on the top right corner the volume view frame.
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
renderFallback(Graphics2D, Graphics2D, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Renderer: Renders this ContourPlot.Renderer's 'scene'.
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TextRenderer
renderFallback(Graphics2D, Graphics2D, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TrianglesRenderer
renderFallbackLinesCT(Graphics2D, Graphics2D, ContourPlot.Lines, double, double, double, double, Rectangle2D, float) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
renderFallbackLinesVT(Graphics2D, Graphics2D, ContourPlot.Lines, double, double, double, double, Rectangle2D, float[][]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer
RenderFrameRate(GLAutoDrawable) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Renders the frame rate to the screen.
RenderingHalftoningAlgorithm(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm
renderingHint - Variable in enum gov.nih.mipav.view.Preferences.InterpolateDisplay: The rendering hint provided to Graphics2D in creating this interpolation.
RenderingIntent(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent
renderingMode - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage: Default rending mode, MIP mode.
RenderMode - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
renderOrder - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
renderPDF(PDDocument, PDPage, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
renderPDF(PDDocument, PDPage, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
renderPDF(PDDocument, PDPage, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
renderPDF(PDDocument, PDPage, int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PDFRenderer: Renders this PDFRenderers contents, that is creating pdf elements and appending them to the specified page within the corresponding document.
RenderSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Render the sculpt image.
RenderViewBase - Class in gov.nih.mipav.view.renderer.J3D: This is an abstract class.
RenderViewBase(ModelImage, ModelImage, GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Calls the constructor for ViewJFrameBase with the same parameters.
RenderViewBase.Matrix - Class in gov.nih.mipav.view.renderer.J3D: This matrix class is used for 3D object rotate along a specifid axis.
RenderWithTransparency(boolean, Vector2d[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Rendering multiple translucent surfaces is accomplished with the following steps: 1.
reNew(int, int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh
renormalize_convNMF(double[][][], Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Renum() - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.Renum
renumberregions(int[][]) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
reorder - Variable in class gov.nih.mipav.model.file.FileNRRD: The orientation information in some NRRD files cannot be applied to MIPAV without dimension reordering.
reorder() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: After edge collapses are finished, the actual vertex locations, the triangle connectivity array, and the collapse record information must be reordered to support fast dynamic change in level of detail.
reorderAfni(ModelImage, int[], int[]) - Method in class gov.nih.mipav.view.ViewJFrameBase: Reorders the AFNI image based on the axis orientations.
reorderedList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
ReorderProgram(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
ReorderProgramForSchurTypeLinearSolver(CeresSolver.LinearSolverType, CeresSolver.SparseLinearAlgebraLibraryType, HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
reOrgInfo(ModelImage, FileInfoAnalyze) - Method in class gov.nih.mipav.model.file.FileAnalyze: Takes the image and sets it to analyze defaults, using the specified info.
reOrgInfo(ModelImage, FileInfoSPM) - Method in class gov.nih.mipav.model.file.FileSPM: Takes the image and sets it to SPM defaults, using the specified info.
reOrient() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Reorient ImageB so that directions will coincide with ImageA.
reorientCoordSystem(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Re-orient the matrix to world and left-hand coordinate systems if required.
reorientCoordSystem(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Re-orient the matrix to world and left-hand coordinate systems if required.
reorientCoordSystem(TransMatrix, ModelImage, ModelImage, boolean, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Re-orient the matrix to world and left-hand coordinate systems if required.
rep_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
rep_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
repaint() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
repaint() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Deprecated.
repaintButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
repaintButtons() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic
repaintFrame() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Updating image for each componentImage vector element.
repaintImageIntensityLabelFast(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Repaints the image intensity label.
repaintIsSheduled - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
repaintPaintBrushCursorFast(Graphics2D) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Repaints the paint brush cursor without repainting the entire image.
repArray - Variable in class gov.nih.mipav.model.file.FilePackBit: Temporary buffer.
repeat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
repeat(libdt.Mat, int) - Method in class gov.nih.mipav.model.algorithms.libdt
repeat(libdt.Mat, int, int, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt
repeat_inneriter - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
repetition_timeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
repetitionTime - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
repetitionTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
repetitionTime - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
RepetitionTime - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
REPLACE - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: REPLACE indicates the current image is replaced after algorithm is run.
REPLACE - Static variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: REPLACE indicates the current image is replaced after algorithm is run.
replaceBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
replaceEscapedSpecialCharacters(String) - Static method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Removes backslashes escaping any special list characters.
replaceFunction(float[], float[]) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Replaces the function used with a line image.
replaceFunction(float[], float[], int[][], VOI, int) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Replaces the function used with a line image.
replaceGeodesic(TriMesh, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
replaceGeodesic(TriMesh, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
ReplaceGeodesic(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects: use later.
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: Select replacing the current image
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Radio buttons for alg output options.
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
replaceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
replaceImageRadio - Variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions: DOCUMENT ME!
replaceMatrices(Vector<TransMatrix>) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Helper function for XML type images which may have several associated matrices.
replaceMatrix(String, TransMatrix) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Replaces the matrix at the given key (or inserts if that key is not present, which should not happen).
replaceMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: ReplaceMesh is used by the Geodesic when a mesh is cut.
replaceMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
replaceMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: ReplaceMesh is used by the Geodesic when a mesh is cut along either an open or closed geodesic curve, the original mesh is changed, but not deleted and no new mesh is added.
replaceMesh(TriMesh, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
replacePatternMultiline(String, String, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
replacePoint(float, float, int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Replaces the point at param index with point of params x and y.
replacePoint(Vector2f, int) - Method in class gov.nih.mipav.model.structures.TransferFunction: Replaces the point at param index with point of pt.
ReplacePoints(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Replaces the points in the mesh with the one given by a shape.
replaceSlicesAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
replaceTag(RandomAccessFile, FileDicomKey, FileDicomTag, int) - Method in class gov.nih.mipav.model.file.FileDicom: newTag is written to raFile to replace old tag of tagElementLength
ReplaceTinyPivot - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
replicateBorder3d(double[][][], int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
repnField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
rePopulateLists() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
ReportBugBuilder - Class in gov.nih.mipav.view.dialogs.reportbug
ReportBugBuilder() - Constructor for class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Initializes the GUI and then deletes the created files once the program has finished running
ReportBugBuilder.BugType - Enum in gov.nih.mipav.view.dialogs.reportbug
reportResult(String, boolean, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
reportResult(String, int, boolean, double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
reposMarker(int) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
repTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 242 Cardiac repertition time.
reqnum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 195 - 13 bytes Requisition Number.
request_virt_barray(libjpeg.jpeg_decompress_struct, int, boolean, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
request_virt_sarray(libjpeg.jpeg_decompress_struct, int, boolean, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
requestedLinearSolverType - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
requestedNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
requestedNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
requestStop() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse: Ask for this thread to stop playback of the events.
requireAreaInImageBounds(int, int, int, int, ContourPlot.ImgBase<?>) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Throws an IllegalArgumentException when the specified area is not within the bounds of the specified image, or if the area is not positive.
requiredPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
requiredPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: panels
rer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
RERR - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
res - Variable in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
res - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Original resolutioin arrray.
res - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
res - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
res - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Original resolutioin arrray.
res - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
res - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Reordered resolutions according to orientation.
res_node() - Constructor for class gov.nih.mipav.model.algorithms.KDTree.res_node
res_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Temporary values for Tile parts, initialised in pi_create_encode
res2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
res2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction
res2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction
res3 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
res3la - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
res4 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
resabs - Variable in class gov.nih.mipav.model.algorithms.Integration2
resabs - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
resample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: true if resolutions unequal, false if resolutions equal.
resample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: true if resolutions unequal, false if resolutions equal.
resample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: true if resolutions unequal, false if resolutions equal.
resample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: true if resolutions unequal, false if resolutions equal.
resample(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Resamples and creates a new quad mesh, detaching the parent branch group and readding the surface.
resample(int, double, double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ColorMap: Returns a uniformly sampled version of this map with the specified number of samples within the specified interval.
resample(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution
resample(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Call by the plotter render frame to resample.
resample_lanczos2(SIFT3D.Image, double, double, double, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resample_linear(SIFT3D.Image, double, double, double, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
RESAMPLE_STATUS_DEFAULT_TEXT - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resample255(float[], float, float) - Static method in class gov.nih.mipav.model.file.FileIO: The purpose of this method is to take a buffer of float and resample the values to proper UBYTE values.
resampleAll(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor: Resample all the slices for the current permuted volume data.
resampleAll(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: Resample all the slices for the current permuted volume data.
resampleAll(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: Resample all the slices for the current permuted volume data.
resampleAll(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity: Resample all the slices for the current permuted volume data.
resampleAll(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Resample all the slices for the current permuted volume data.
resampleDialog - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reference to resample dialog, use to null out the resample dialog in this frame.
resampledImage - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Temp Model image.
resampledImageFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: DOCUMENT ME!
resampledT2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Structural T2 image, resampled to match the DWI image series.
resampledT2Text - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
resampleGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampleImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
resampleImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampleImage() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture: Ressample images to Power of 2.
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
resampleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
resampleMatrixSourceButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resampleMatrixTargetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resamplePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
resampleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP: Resample a single slice of the permuted volume data.
resampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Resample a single slice of the permuted volume data.
resampleSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampleStatusTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resampleT2(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Resamples the input ModelImage to match the extents and resolutions of the second ModelImage.
resampletoImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampletoMatrixFile - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampletoUser - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resampleW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: true if weight image must be resampled.
resampleW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: true if weight image is resampled.
resampleW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: true if weight image must be resampled.
resampleW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: true if weight image is resampled.
resamplingConstraint - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: default sampling constraint contribution:.
resasc - Variable in class gov.nih.mipav.model.algorithms.Integration2
resasc - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
resB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: private double dimA[], resA[];.
RESCAL(int, int, int[], int[], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ReScale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
rescale_wavelet_filterbank(PyWavelets.DiscreteWavelet, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
rescaleIntercept - Variable in class gov.nih.mipav.model.file.FileInfoBase: DICOM images have a rescale y-intercept value that we have also kept in the base.
rescaleIntercept - Variable in class gov.nih.mipav.model.file.FilePARREC: floating point value = raw value/scaleSlope + rescaleIntercept/(rescaleSlope*scaleSlope)
rescaleSlope - Variable in class gov.nih.mipav.model.file.FileInfoBase: DICOM images have a rescale slope value that we have also kept in the base.
rescaleSlope - Variable in class gov.nih.mipav.model.file.FilePARREC
rescaleToBins() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
rescaleToComplex(ModelImage, ModelImage, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
resCount - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
resDimGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: End value, initialised in pi_initialise_encode
researchMode - Variable in class gov.nih.mipav.model.file.FileGESigna4X
researchMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
Reserve(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
reserved - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: DOCUMENT ME!
reserved - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis: Reserved for future TrackVis use
reserved - Variable in class gov.nih.mipav.model.file.FileLSM
RESERVED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
reserved1 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
reserved2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Reserved by array.
reserved2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRQ: DOCUMENT ME!
reserved2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRSP: DOCUMENT ME!
reserved2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
reserved3 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Reserved by array.
reserved3 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
reserved4 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: DOCUMENT ME!
reservedBytes() - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR: Returns whether tags with the VR use two reserved bytes in its encoding
reserveMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
reserveMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataChar
reserveMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble
reserveMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat
reserveMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse
reset - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
reset() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Reset the unordered set to its initial state.
reset() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Reset the unordered set to its initial state.
reset() - Method in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
reset() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator
reset() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator
reset() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator
reset() - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Remove all of the tags from this table (does not affect reference table, if this is a non-reference table).
reset() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
reset() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
reset() - Method in class gov.nih.mipav.model.structures.PointStack: Removes all elements in array by setting data pointer to zero.
reset() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Reset the unordered set to its initial state.
reset() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Identity matrix setup.
reset() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Reset the unordered set to its initial state.
reset() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator: This method is the allocators destructor.
reset() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Sets root to null.
reset() - Method in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Sets root to null.
reset(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
reset(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Reset the unordered set to the specified state.
reset(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Reset the unordered set to the specified state.
reset(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Reset the unordered set to the specified state.
reset(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Reset the unordered set to the specified state.
Reset(CeresSolver.LossFunction, CeresSolver.Ownership) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
reset_error_mgr(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
reset_input_controller - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller
reset_input_controller(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
RESET_INPUT_CONTROLLER - Static variable in class gov.nih.mipav.model.file.libjpeg
reset_it(GenericPolygonClipper.it_node[]) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
reset_lmt(GenericPolygonClipper.lmt_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
reset_marker_reader(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
resetAdditionalPluginDirectories() - Static method in class gov.nih.mipav.plugins.PluginUtil
resetAdjustableVOIs(double[][], double[][]) - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration: Resets all of the VOIPoint's by moving them from pointSet A to point set B.
resetAlphaLine() - Method in class gov.nih.mipav.model.structures.ModelLUT: Resets the alpha function to be linear.
resetAxis() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Reset the z-axis.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reset the image volume to the original position.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent resetImage method.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent resetImage method.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reset image volume orieint along X axis.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent resetImage method to update image volume in the MIP volume renderer.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Reset x-axis.
resetAxisX() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Reset image volume orientation along X axis.
resetAxisXInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
resetAxisXInv() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Reset image volume orientation along X axis.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reset the image volume to the original position.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent resetImage method.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent resetImage method.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reset image volume orieint along Y axis.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent resetImage method to update image volume in the MIP volume renderer.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Reset y-axis.
resetAxisY() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Reset image volume orientation along Y axis.
resetBounds(Rectangle) - Method in class gov.nih.mipav.view.ViewJComponentGraph: Sets the bounds of the component.
resetBspline() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: Resets parameters used by the Bsplines.
resetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Reset button to reset the default preset values.
resetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Reset button to reset the default preset values.
resetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Reset button to reset the default preset values.
resetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
resetButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Button used to reset all preferences to default state.
resetButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Reset button.
ResetClip() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect: Reset the axis-aligned clip planes, eye, inverse-eye and arbitrary clip planes to neutral.
resetColorChange() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Reset the color changes for the Before sphere and the original surface, based on the original surface material properties, also update the user-interface buttons to the original values.
resetColorChange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Reset the color changes for the Before sphere and the original surface, based on the original surface material properties, also update the user-interface buttons to the original values.
resetCounter() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
resetCurrentHistograms() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
resetData() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
resetDialogs() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Sets the reference to this dialog for all of the images listening to it to null.
resetDialogs() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Sets the reference to this dialog for all of the images listening to it to null.
resetDialogs() - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog: Sets the reference to this dialog for all of the images listening to it to null.
resetDomainButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph
resetDrawGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Remove all the geodesic lines and reset to draw the new geodesic lines.
resetDrawGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Remove all the geodesic lines and reset to draw the new geodesic lines.
resetFrame() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
resetHistoLUT() - Method in class gov.nih.mipav.view.JPanelHistogram: Resets the histogram and histogram panel.
resetImage() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Reset the image volume to the original position.
resetImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent resetImage method.
resetImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent resetImage method.
resetImage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Reset image volume orieint along Z axis.
resetImage() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent resetImage method to update image volume in the MIP volume renderer.
resetImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Reset image volume orientation along Z axis.
resetIndex() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
ResetIteNumber(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: reset every n iterations
resetIterator() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
resetIterator() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
resetLabelList(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Used to reset the button labels to their default setting.
resetLivewire() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
resetLivewire() - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Resets the current livewire VOI.
resetLUT(ModelLUT, ModelImage) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
resetLUTMinMax(ModelImage, ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Calculate the LUT from the resampled image.
resetLUTs() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Resets the LUTs.
resetMouseDialog() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Reset mouseDialog box.
resetNeighbourLink(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode
resetPaintBrushSize() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Resets the paint brush size to the remembered value.
resetParser() - Method in class gov.nih.mipav.model.scripting.ParserEngine: Resets the parser to the beginning of the script.
resetPicked() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Resets the colors of the picked nodes to the original colors.
resetPort(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Resets the port and changes where the receiver is listening.
resetPresentationContext() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Removes all presentation contextes from the list (vector).
resetProbeTransform() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Resets the probe navigation (rotation, translation, zoom) to the origin.
resetRandom() - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear: resets the PRNG this is i.a. needed for regression testing (eg. the Weka wrapper)
resetRangeButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
resetRecorder() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Erases the current script.
resetRenderAnnotateList() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
resetRenderBranchConnect() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Called any time a change has been made to a new branch so that the connection between the branch and its parent can be rendered.
resetRenderBranchConnect() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Called any time a change has been made to a new branch so that the connection between the branch and its parent can be rendered.
resetRenderBranchPath() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Called any time the position along the current curve changes and the color of the curve needs to change to show what has been visited.
resetRenderBranchPath() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Called any time the position along the current curve changes and the color of the curve needs to change to show what has been visited.
resetRenderScene() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Called any time the scene needs to be regenerated.
resetRenderSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Called whenever any of the rendering properties of the surface are modified.
resetRenderSurfaceColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: If the color LUT defined for mean curvature pseudocolor mapping is defined, then use it to reset the colors.
resetRenderSurfaceConnectivity() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: Resets the portion of the surface to be rendered based on the current triangle connectivity information.
resetrep_col(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
resetRGB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
resetScript() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Erases the current script.
ResetSeed() - Method in class gov.nih.mipav.model.algorithms.Fastfit
resetSize(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Resizes the text field so that all characters are displayed.
resetSliceToZero(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
resetStart - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
resetStart() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Resets all retrace variables and allows it to start anewA
resetThresholdChannels() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

resets boolean for threshold channels.
ResetTime() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D: Resets time
ResetTime() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Resets time
ResetTimeStatistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction
Resetting() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: resetting function
resetToDefaults() - Static method in class gov.nih.mipav.view.Preferences: Resets the current MIPAV properties to the defaults and saves the preferences file.
resetToStartCodeWord() - Method in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
resetToStartCodeWord() - Method in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
resetTransferLine(float, float) - Method in class gov.nih.mipav.model.structures.ModelLUT: Resets the transfer function to be linear.
resetTransferLine(float, float, float, float) - Method in class gov.nih.mipav.model.structures.ModelLUT: Resets the transfer function to be linear.
resetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Current transform3D object.
resetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Current transform3D object.
resetValues() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: Resets the values to match the current lightbox.
resetView() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
resetVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage: Resets VOI vector for new VOIs.
resetVolumeData(ModelImage, int, GraphicsImage, Texture, String, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Part of the GLEventListener interface.
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer
reshape(GLAutoDrawable, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
residu(int, boolean, double[], double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
residual_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.Fixture
residual_block_evaluate_scratch - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
residual_block_residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateScratch
residual_block_set() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
residual_block_set_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
residual_blocks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
residual_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program
residual_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer
residual_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
residual_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Program
residual_evaluation_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
residual_J_params_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
residual_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProgramEvaluator
residual_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverSummary
residual_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategySummary
residual_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
residual_reset_period - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
residual_scaling_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
ResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, Vector<CeresSolver.ParameterBlock>, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock
ResidualBlockUtilsCheckAllCombinationsOfBadness() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
residuals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
residuals - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ExpectedEvaluation
residuals - Variable in class gov.nih.mipav.model.algorithms.LsqFit
residuals - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D array of doubles of dimension nPts containing the value of the residuals at the termination point a;.
residuals - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D array of doubles of dimension nPts containing the value of the residuals at the termination point a;.
residuals - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
residuals_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
residuals_ellipse(double[], double[][], Vector<Vector3f>, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.VOIContour: This is a port of the MATLAB file Reisduals_ellipse written by Hui Ma on May 24, 2010.
residuals_offset_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
residueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
resIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
resInfoCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: The voxel resolutions of the image to be registered to the reference image.
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: The voxel resolutions of the image to be registered to the reference image.
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The voxel resolutions of the image to be registered to the reference image.
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: The voxel resolutions of the image to be registered to the reference image.
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The voxel resolutions of the image to be registered to the reference image.
resInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: The voxel resolutions of the image to be registered to the reference image.
resize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Method that resizes the frame and adjusts the rows, columns as needed.
resize(Vector<libdt.Mat>, int) - Method in class gov.nih.mipav.model.algorithms.libdt
Resize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
Resize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Resize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Resize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Resize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
Resize(int, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Change number of shape points in the shape.
Resize(int, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
Resize(int, double[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
Resize(int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
Resize(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
Resize(int, int, double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
resize_Keypoint_store(SIFT3D.Keypoint_store, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resize_Mat_rm(SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resize_Pyramid(SIFT3D.Image, int, int, int, int, int, SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resize_SIFT3D(SIFT3D.SIFT3DC, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resize_SIFT3D_Descriptor_store(SIFT3D.SIFT3D_Descriptor_store, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
resizeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: resize button.
resizeCursor - Static variable in class gov.nih.mipav.view.MipavUtil: A resizing cursor.
resizeCursor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Component resize mouse cursor.
resizeDouble(Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.libdt
resizeImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
resizeOnClose - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
resizePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Method that resizes the frame and adjusts the rows, columns as needed.
resizePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI: Method that resizes the frame and adjusts the rows, columns as needed.
resizePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Method that resizes the frame and adjusts the rows, columns as needed.
resizePanel(int, int) - Method in class gov.nih.mipav.view.JFrameHistogram: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Resize the control panel when mouse drag expanding or minimizing the frame.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Resize the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Resize the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Resizie the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Resize the control panel when mouse drag expanding or minimizing the frame.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Resizing the control panel.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Resize the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Resizig the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizePanel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D: Resizing the control panel with ViewJFrameVolumeView's frame width and height.
resizeSlider() - Method in class gov.nih.mipav.view.ViewJSlider: Resize slider The max number of major ticks and max number of minor ticks are determined using width/height of dialog.
resliceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogReslice: Reslice algorithm.
resno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t: resolution that identify the packet
resno_decoded - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: number of decoded resolution
resno0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Resolution num start, Component num start, given by POC
resno1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Layer num end,Resolution num end, Component num end, given by POC
resol3 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: resolution of the 3rd dimension.
resol4 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: resolution of the 4rd dimension.
resols - Variable in class gov.nih.mipav.model.file.FileNRRD: DOCUMENT ME!
resols - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Storage of the image voxel resolutions.
resols - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
resols - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Resolutions of image A.
resols - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Resolutions of image A.
resols - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Resolutions of image A.
resols - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Storage of the image voxel resolutions.
resols - Variable in class gov.nih.mipav.view.ViewJFrameImage: Storage of the image voxel resolutions.
resols - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature: Storage of the image voxel resolutions.
resols - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Resolutions of image.
resolUnit3 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: units of measure for the 3rd dimension.
resolUnit4 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: units of measure for the 4th dimension.
RESOLUTION - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar: This is the actual resolution of progress bar which we will be using regardless of the actual range specified.
RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
resolutionBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
resolutionCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: difference between x,y resolutions (in plane) and z resolution (between planes).
resolutionCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet: DOCUMENT ME!
resolutionCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: DOCUMENT ME!
resolutionCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
resolutionCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: difference between x,y resolutions (in plane) and z resolution (between planes).
resolutionIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
resolutions - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
resolutions - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
resolutions - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
resolutions - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_comp_t
resolutions - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
resolutions - Variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.model.file.FileMetaImage
resolutions - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.model.file.FileNIFTI: NIFTI pixdim information is converted into MIPAV resolutions information Only those pixdim[i] for which the niftiExtents[i] > 1 are passed into a resolutions[j] value.
resolutions - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage: Voxel resolutions (typically x,y,z(slice spacing),t).
resolutions - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
resolutions - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
RESOLUTIONS_ALL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: The label to use for the parameter indicating whether to change all slices.
resolutions_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t
resolutions3D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
resolutions4D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
resolutionsCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
resolutionSwitches - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration
resolutionSwitchPoints - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
resolutionTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
resolutionX - Variable in class gov.nih.mipav.view.ViewJComponentBase: resolutionX and Y are used to correct difference in intra and inter plane voxel resolution These represent the aspect ratio of the image These are NOT to be confused with the pixel resolutions.
resolutionX - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
resolutionY - Variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
resolutionY - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
resolve(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
resolveFileList(File[]) - Method in class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
resp_params - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
respfn - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
respfn_canon - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
respfn_default - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
respfn_linear - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
response - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
response - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
RESPONSE - gov.nih.mipav.model.algorithms.StochasticForests.PredictionType
response_classIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
response_classIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
response_classIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
response_classIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
response_timepointIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
response_timepointIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: The voxel resolutions of the reference image.
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: The voxel resolutions of the reference image.
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: The voxel resolutions of the reference image.
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: The voxel resolutions of the reference image.
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: The voxel resolutions of the reference image.
resRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: The voxel resolutions of the reference image.
resS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t: Start value, initialised in pi_initialise_encode
restart - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
restart - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
restart - Variable in class gov.nih.mipav.model.file.FileSVS
restart - Variable in class gov.nih.mipav.model.file.FileTiff
restart() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
restart() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
restart() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCInputStream
restart() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGDCTInputStream
restart() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
restart() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
restart() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
restart() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCInputStream
restart() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGDCTInputStream
restart() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
restart_interval - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
restartCheckerboardAnimateThread() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
restartInRows - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Numbers needed for restart.
restartInterval - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Restart interval.
restartIntervalTermination(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
restartIntervalTermination(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
restartRowsToGo - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Numbers needed for restart.
restarts_to_go - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
restarts_to_go - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
RESTORE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
RESTORE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
RESTORE_TO_BACKGROUND_COLOR - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
RESTORE_TO_PREVIOUS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod
restoreBackFromColMajorRef(Matrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
restoreDefaults() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: restore default parameters
restoreDefaults() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: restore default parameters
restoreDefaultsButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: buttons *
restoreDefaultsButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
restoreDefaultsPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
restoreDefaultsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
restoreFinalData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
restoreFinalData(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
RestoreGlobalState(int, Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
restorePerVertexColor(Material, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Restores the per-vertex colors for the surface at the index parameter.
restorePerVertexColors(Material) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Restores the ModelTriangleMesh per-vertex colors to the saved per-vertex colors.
restorePreferredColumnConfiguration() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
restoreSavedExecuter(Node) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Called when a script is loaded from disk.
RestoreState(VolumeRenderState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
restoreSurfaceMasks(BitSet[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Restores the mask list from the array.
RestoreTabs(VolumeRenderState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
restoreTriColor() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Resets the previously picked triangle to it's orginal color:
restoreTriColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Resets the previously picked triangle to it's original color:
restoreVertexColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Restores the vertex colors for the surfaces.
restoreVertexColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Restores the ModelTriangleMesh per-vertex colors to the surface color.
restoreVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage: Sets VOI vector for with new VOIs.
resTransformGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
RestrictedLaplacianMatrixFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
RestrictedLaplacianMatrixFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
restrictNoFutureDates() - Method in class gov.nih.mipav.view.JPanelEditDate: accessor to find out whether the panel is set to restrict the panel-display from displaying dates in the future.
restrictNoFutureDates(boolean) - Method in class gov.nih.mipav.view.JPanelEditDate: sets the panel use the restriction that it is to allow no dates after today.
restrictPastDates() - Method in class gov.nih.mipav.view.JPanelEditDate: accessor to find out whether the panel is set to restrict the panel-display from displaying dates in the past.
restrictPastDates(boolean) - Method in class gov.nih.mipav.view.JPanelEditDate: sets the panel use the restriction that it is to allow no dates prior to today.
result - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
result - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
result - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
result - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: DOCUMENT ME!
result - Variable in class gov.nih.mipav.model.algorithms.Cephes
result - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Outputted result
result - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
result - Variable in class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest: output result
result - Variable in class gov.nih.mipav.model.algorithms.Gamma: output result
result - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Outputted result
result - Variable in class gov.nih.mipav.model.algorithms.Integration2: Approximation to the integral.
result - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Approximation to the integral.
result - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: The routine tries to satisfy the least stringent of both accuracy requirements.
result - Variable in class gov.nih.mipav.model.algorithms.Psi: output result
result - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ: DOCUMENT ME!
result - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ: DOCUMENT ME!
result - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept: Result default to 2.
result - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
result - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
result - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
result - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler
result_image - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
RESULT_IMAGE - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Label used in ActionDiscovery system for main result image of an algorithm.
RESULT_MASK_CONNECTED - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
RESULT_MASK_FLAGGED - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
RESULT_MASK_INSIDE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: These are bit masks used in the result volume which identifies how samples were classified at different steps during the processing.
RESULT_MASK_NONUNIFORM_GRADIENT - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
RESULT_MASK_SKELETON - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
RESULT_MASK_SKELETON_NEIGHBOR - Static variable in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D: DOCUMENT ME!
result35RegImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
resultCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to display the log of result image.
resultExtents - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Extents the resultImage should have.
resultImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The result image.
resultImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle
resultImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: src image, result image
resultImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: result image *
resultImage - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: model images
resultImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
resultImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
resultImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Result Image.
resultImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
resultImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: result image *
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: The result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogClose: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Temp Model image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogErode: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Image where the result is stored.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath: result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: image create if new image button is selected.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: a cloned version of importImage that will be inserted into the source images's B slot.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMask: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Result image - image returned from registration algorithm.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Result image - image returned from registration algorithm.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReslice: resliced image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRotate: Result image after algorithm has completed.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: src image, result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSwap34: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Result image.
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThinning2D: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: result image
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
resultImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: result image *
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: result image *
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
resultImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
resultImageA - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
resultImageA - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: DOCUMENT ME!
resultImageB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: DOCUMENT ME!
resultImageG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
resultImageG - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
resultImageG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: DOCUMENT ME!
resultImageH - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: DOCUMENT ME!
resultImageName - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI
resultImagePanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
resultImagePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
resultImageR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
resultImageR - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
resultImageR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: DOCUMENT ME!
resultImages - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Array of Result Images
resultImageS - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: DOCUMENT ME!
resultImageSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
resultImageSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
resultImageSliderPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
resultImageSliderPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
resultImg - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
resultLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: result label to show the bone, vasculature detection information message.
resultMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: DOCUMENT ME!
resultMesh - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
resultNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
resultNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
resultNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
resultNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
resultNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
resultNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
resultPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
resultPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
resultPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
results - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
results_root - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
resultScrollPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: scroll pane for result image *
resultScrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: scroll pane for result image *
resultsFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
resultsFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
resultsFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
resultsFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
resultsFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
resultsFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
resultsFileNameLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
resultsFileNameLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
resultsFileNameLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
resultsFileNameText - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
resultsFileNameText - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
resultsFileNameText - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
resultString - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset: DOCUMENT ME!
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: The resultant polygon and the evolution has completed.
resultVOI - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: result VOI
resX - Variable in class gov.nih.mipav.model.file.FileGESigna4X
resX - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
resX - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
resX - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
resX - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
resXUnit - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
resXUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
resXUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
resXUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
resY - Variable in class gov.nih.mipav.model.file.FileGESigna4X
resY - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
resY - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
resY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
resY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
resYUnit - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
resYUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
resYUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
resYUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
resZUnit - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
resZUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
resZUnit - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
RETRACE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
RETRACE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
retraceContour(VOIBase, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
retriangulate(Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Generates the new VertexBuffer and IndexBuffer for the retriangulated faces of the cube based on how the cube intersects with the clipping plane.
retrieveImage(String) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Returns an image with a particular parameter name.
retrieveInputImage() - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Returns the first input image for the algorithm.
retrieveInputImage(int) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters: Returns one of the algorithm's input images.
retrieveValues(String) - Method in class gov.nih.mipav.model.file.FilePGM: DOCUMENT ME!
retrieveValues(String) - Method in class gov.nih.mipav.model.file.FilePPM: DOCUMENT ME!
retrieveValues(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
return_value - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProbeResults
return_value_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
returnDeformedCopy(float[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
returnImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Returns the dicom-ordered image.
returnImage() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Returns the rotated image.
returnKey(String) - Static method in class gov.nih.mipav.model.file.FileInterfile: Returns the key found in the string.
returnTag() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: returns the value of the edited tag.
returnTag() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: returns the value of the edited tag.
returnTag() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: returns the value of the edited tag.
returnValue(String) - Method in class gov.nih.mipav.model.file.FileInterfile: Returns the value found in the string.
retwist - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
retwist() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
retwist(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation
retwistAnnotation(VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
retwistAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
retwistAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
retwistLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
retwistLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
reuse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
reuse_diagonal_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy
rev_angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
REV_MIN(GenericPolygonClipper.edge_node[], int, int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
revbin_permute(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
Reverse() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.Reverse: Creates a new Reverse object.
Reverse() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.Reverse: Creates a new Reverse object.
Reverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
Reverse() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Reverses the vector.
reverseButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
reverseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
reverseButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
reversedMergesort(double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter: Sorts the specified array of doubles into descending order.
reversedMergesort(double[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter
reverseIdxGrid - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
ReversePointOrder() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Reverses the point point ordering.
revertImage() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: revert to previous mask.
rewind(BufferedReader, String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
rewind(BufferedReader, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
rex - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: DOCUMENT ME!
rexp(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
rfaButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Button for RFA.
RFARC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RFARG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rfaSeparator - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: RFA separator.
rfastFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The main RFAST frame.
RfBCb - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfBCb - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
RfBCr - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfBCr - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
RfBY - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfBY - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
rfft(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
rfi - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
rfr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
rfrac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
rfrd(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Ported from Tohru Morita article.
rfrdb(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Ported from Tohru Morita article.
rftbsub(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
rftfsub(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
RfWCb - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfWCb - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
RfWCr - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfWCr - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
RfWY - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
RfWY - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
rfx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rfy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rfz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
RGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
rgamma(double) - Method in class gov.nih.mipav.model.algorithms.Cephes
RGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
rgb - Variable in class gov.nih.mipav.model.file.FileHistoLUT: The color image histogram data to save.
rgb(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit RGB color components into a single 32bit ARGB integer value with alpha=255 (opaque).
RGB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
RGB - Static variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
RGB - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorEncoding
RGB_BETWEEN_SPACEANDTIME - Static variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
RGB_BLUE - Static variable in class gov.nih.mipav.model.file.libjpeg
rgb_bounded(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit RGB color components into a single 32bit ARGB integer value with alpha=255 (opaque).
rgb_bounded(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit RGB color components into a single 32bit ARGB integer value with alpha=255 (opaque).
rgb_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
rgb_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
RGB_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
rgb_fast(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit RGB color components into a single 32bit ARGB integer value with alpha=255 (opaque).
rgb_fast(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit RGB color components into a single 32bit ARGB integer value with alpha=255 (opaque).
RGB_FIRST - Static variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
rgb_fromNormalized(double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value with alpha=255 (opaque).
rgb_fromNormalized(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value with alpha=255 (opaque).
rgb_gray_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
rgb_gray_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
RGB_GRAY_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
RGB_GREEN - Static variable in class gov.nih.mipav.model.file.libjpeg
RGB_LAST - Static variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
RGB_LUT - Static variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: Indicates a RGB LUT.
RGB_PIXELSIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
RGB_RED - Static variable in class gov.nih.mipav.model.file.libjpeg
rgb_y_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
rgb1_gray_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
rgb1_gray_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
RGB1_GRAY_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
rgb1_rgb_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
rgb1_rgb_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg
RGB1_RGB_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg
RGB2Lab(double[][][], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
rgbA - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
RGBa - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
RGBa - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
RGBa - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
RGBAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
RGBAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: DOCUMENT ME!
RGBAOrder - Variable in class gov.nih.mipav.model.file.FileNRRD: If true, data is a specialized form of 4-color with red, green, blue, and alpha, in that order.
RGBAOrder - Variable in class gov.nih.mipav.model.file.FileRaw: Allow reading from 4 color files with RGBA order
RGBAOrder - Variable in class gov.nih.mipav.model.file.FileRawChunk
rgbAverageIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
rgbAverageIntensities - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
rgbB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
RGBb - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

DOCUMENT ME!
RGBb - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
RGBb - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
RGBButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
RGBButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
RGBExtents - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

RGB extents.
RGBExtents - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
rgbImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
RGBImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Flag for color or noncolor image.
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Indicates which channel of the RGB image the histogram should be calculated. 1=Red 2=Green 3=Blue
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Indicates which channel of the RGB image the histogram should be calculated. 1 = Red channel 2 = Green channel 3 = Blue channel
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
RGBOffset - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
RGBOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
RGBOffset - Variable in class gov.nih.mipav.view.ViewJFrameGraph
rgbPos - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
RGBSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
rgbString - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: String representing RGB components used in applied paint
RGBT - Variable in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
RGBT - Variable in class gov.nih.mipav.view.ViewJPanelHistoLUT: The RGB lookup table.
RGBTa - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
RGBTa - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: RGB tables for imageA and imageB
RGBTA - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
RGBTA - Variable in class gov.nih.mipav.view.PatientSlice: ModelRGB lookup table for color ModelImages: imageA rgb table.
RGBTA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: RGB table for image A.
RGBTA - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Lookup table of the color imageA, B.
RGBTA - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Lookup table of the color imageA, B.
RGBTA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Model RGB table A reference.
RGBTA - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Tagged for deletion - Matt, Ruida, Lee, ModelRGB table for imageA, B.
RGBTA - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: true if selected red, green, blue components present in RGB image.
RGBTA - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: true if selected red, green, blue components present in RGB image.
RGBTA - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
RGBTA - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
RGBTA - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
RGBTA - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: set to give 6 digits to the right of the decimal.
RGBTA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
RGBTA_GM - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Tagged for deletion - Matt, Ruida, Lee, RGB table reference of the image A, B.
RGBTb - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
RGBTb - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: RGB tables for imageA and imageB
RGBTB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.PatientSlice: ModelRGB lookup table for color ModelImages: imageB rgb table.
RGBTB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: RGB table for image B.
RGBTB - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Lookup table of the color imageA, B.
RGBTB - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Lookup table of the color imageA, B.
RGBTB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Model RGB table B reference.
RGBTB - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
RGBTB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
RGBTB_GM - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

DOCUMENT ME!
RGBtoLUV(float[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
RGBValue - Variable in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: int vlaue indicating RGB channel.
RGEOM - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RGM - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
rh - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
rho - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
rho - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
rho - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo
rho - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model
rho - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
rho - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
rho - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo
rho - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model
rho - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
RHO - Variable in class gov.nih.mipav.model.algorithms.NelderMead
rho_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LossFunctionWrapper
rho_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
rhoArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
RHOFN(int[], double[][], double[], double[], double, double, double[], int, double, double, double, boolean, double, int, int, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rhoOld - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
rhs() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
rhs() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
rhs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver
rhs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
rhs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver
rhs_expected - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
rhs_locks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
RHSFUNC_RECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES
Ri - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
Ri - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
rib - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: blood intrinsic relaxivity rate in 1/(mMol * sec) input as reciprocal, in seconds (0.001 - 10000.0)
rib - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
ribMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
ribMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
RICIAN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
RICIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise
RicohMakernoteDescriptor(MetadataExtractor.RicohMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDescriptor
RicohMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory
RIDDERS - gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
ridders_epsilon - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
ridders_relative_initial_step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
ridders_step_shrink_factor - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffOptions
Riff - gov.nih.mipav.model.file.MetadataExtractor.FileType
right - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
right - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdnode
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
right - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
right - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
right - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
right - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode: Node to the right in the tree.
right - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
right - Variable in class gov.nih.mipav.view.RubberbandLivewire.TreeNode: Node to the right in the tree.
Right() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
RIGHT - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
RIGHT - Static variable in class gov.nih.mipav.model.structures.VOIBase: The right arrow key.
RIGHT - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
RIGHT_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Right bounding edge of the canvas in world coordinates.
RIGHT_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
RIGHT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
RIGHT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
RIGHT_LEG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
RIGHT_MIDDLE - Static variable in class gov.nih.mipav.model.structures.VOIBase
right_of(delaunay.Halfedge, delaunay.Point) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
RIGHT_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Right reference point.
rightButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
rightButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
RightButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.RightButton: Creates new button with correct icon and given tool tip.
RightButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.RightButton: Creates new button with correct icon and given tool tip.
RightButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.RightButton: Creates new button with correct icon and given tool tip.
rightContour - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
rightDown - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
rightDownButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
rightDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Right panel down button.
rightDownButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
rightFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
rightLeftButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
rightLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Right panel left button.
rightLeftButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
rightLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
rightLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
rightLegRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
rightLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
RightLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Transfer function right line:
rightMarker - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
RightMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: Creates new thread and sets up mouse event variables appropriately.
RightMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: Creates new thread and sets up mouse event variables appropriately.
RightMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: Creates new thread and sets up mouse event variables appropriately.
RightMouseDragged(MouseEvent, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: Creates new thread and sets up mouse event variables appropriately.
RightMouseDragged(MouseEvent, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: Creates new thread and sets up mouse event variables appropriately.
rightMousePressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrixPreconditionerWrapper
RightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
RightMultiply(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
RightMultiply(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
RightMultiplyE(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
RightMultiplyF(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView
rightPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
rightPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
rightPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
rightPane - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The view pane that contains the image view and tri-planar view panels.
rightPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The view pane that contains the image view and tri-planar view panels.
rightPane - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
rightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Left panel and right panels corresponding to original and expected extents.
rightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
rightPanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
rightPanelRenderMode - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The right panel renderer mode.
rightPanelRenderMode - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample: The right panel renderer mode.
rightParButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
rightPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
rightPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
rightPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
rightPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
rightPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
rightPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
rightreg(delaunay.Halfedge) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
rightRightButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
rightRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Right panel right button.
rightRightButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
RightRotate(AlgorithmPowerWatershed.Rbt, AlgorithmPowerWatershed.RbtElt) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
rightRotateButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
RightRotateButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.RightRotateButton: Creates new button with correct icon and given tool tip.
rightSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
rightSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
rightSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
rightSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
rightSideInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
rightTable - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
rightTable - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
rightTableModel - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
rightTableSorter - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
rightUp - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
rightUpButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: JButton group.
rightUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Right panel up button.
rightUpButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: DOCUMENT ME!
rightVectors - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
rigid - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Flag indicating this is a rigid transformation.
rigid - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Flag indicating this is a rigid transformation.
rigidFlag - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Flag used to indicate if the registration is ridgid (rotation and translation - DOF = 3.
rigidFlag - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Flag used to indicate if the registration is rigid (rotation and translation only; DOF = 3.
rigidFlag - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Flag used to indicate if the registration is ridgid (rotation and translation - DOF = 3.
rigidFlag - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Flag used to indicate if the registration is rigid (rotation and translation only; DOF = 3.
RIGLL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rint() - Method in class gov.nih.mipav.util.DoubleDouble: Rounds this value to the nearest integer.
Rinv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig
rinvmap(double[][], double[][], double[], double[][], double[], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: tissue intrinsic relaxivity rate in 1/(mMol * sec) specified as reciprocal, in seconds (0.001 - 10000.0)
rit - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
riter - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdres
ritMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
ritMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
rix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
rix - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
riy - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
riy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
riz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
riz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rktol_qrfact - Variable in class gov.nih.mipav.model.algorithms.NL2sol
rl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
rl - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
rl - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
rl - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
rlCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
rlCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
RLE - Variable in class gov.nih.mipav.model.file.FileDicom
RLEBitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
RLEBitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
RLEData - Variable in class gov.nih.mipav.model.file.FileDicom
RLEImageData(int) - Method in class gov.nih.mipav.model.file.FileDicom
rlen - Variable in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
rlen - Variable in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
rlenb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
rlenb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
RLETAMARencapsulatedOffset - Variable in class gov.nih.mipav.model.file.FileInfoDicom
rlInvert - Variable in class gov.nih.mipav.model.file.FileNRRD: True for RAS.
rlist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The integral approximations of the subintervals.
rlist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The integral approximations of the subintervals.
rlist - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdres
rlist_insert(KDTree.res_node, KDTree.kdnode, double) - Method in class gov.nih.mipav.model.algorithms.KDTree
rlog1(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
rmap(double[][], double[][], double[][], double[], double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rmax - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Number of digits required to represent the numbers with the required accuracy
rmax - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
rmer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
rmin - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
rmin - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
rmin - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
rmObjDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
rmObjsDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
rms - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
rms(double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
rms(DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
rmse() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_blue_map - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_green_map - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_map - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_red_map - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_sw() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
RMSE_SW - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rmse_sw_mean - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
RmSmRg(int[][], int[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
rmx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rmy - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rmz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rn - Variable in class gov.nih.mipav.model.structures.jama.LUSOL
rn - Variable in class gov.nih.mipav.model.structures.jama.LUSOLEP
RN2J02 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
rnd - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
RND() - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
rNearest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge
rNearest - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge
rNearest - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge
rngkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
rngkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: The suffices km2 and km1 in the names of the variables represent time step k-2 and k-1 respectively.
rNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X
rNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
rNToGo - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
rNums - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
robot - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
robust - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
robust - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
robust_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ROBUST_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
robust_online_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ROBUST_ONLINE_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
robustMaximum(float[], float, int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs: Robust maximum estimation
RobustMaxThresh - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
robustMinimum(float[], float, int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs: Robust maximum estimation
RobustMinThresh - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
ROI - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ROI - Static variable in class gov.nih.mipav.model.file.FileSVS
ROI - Static variable in class gov.nih.mipav.model.file.FileTiff
ROI(Integer, Integer, Integer, Integer, Integer, Integer, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI: Creates a new ROI object.
RoiPredicate(double, double, double, double, AlgorithmBRISK.KeyPoint) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
rois - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: DOCUMENT ME!
roishift - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: Region Of Interest shift
roishift - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: Region Of Interest shift
rollBack() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator: This method rolls back the allocator so that it makes all of the memory previously allocated available for re-allocation.
rollBack(AllocatorState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator: This method rolls back the allocator to the previous memory state and makes all of the memory previously allocated available for re-allocation.
rollbackToCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Roll back the image back to center, reset the camera view close to original view.
rollbackToImageCenter() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: When the mouse tranlation moves the object out of the Viewing bounding box, click the home button to bring the image back to center.
rollIcon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
rom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
ROn - Variable in class gov.nih.mipav.model.structures.ModelRGB: Flag indicating whether the red channel should be displayed.
root - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt
root - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdtree
root - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
root - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: A reference in the voiTree to the currently selected image
root - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Pointer to root of tree.
root - Variable in class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Pointer to root of tree.
root() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Root - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
ROOT_MEAN_SQUARED_ERROR - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
ROOT_TWO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions
root3(double) - Method in class gov.nih.mipav.model.algorithms.Poly
rootfile - Variable in class gov.nih.mipav.view.ViewFileTreeNode: DOCUMENT ME!
RootInfo - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
RootInfo() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RootInfo
rootMeanSquareError - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
rootMSELabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
rootNameCache - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel.JFileTreeCellRenderer: cache for speeding up loading of files, cleared when select occurs*
ROOTNODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: Root node type.
rootQueryPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
roots(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
rootsDegree3(float[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: afRoot should have length 3 which is used to return the real roots found; returns 0 if no root can be found, otherwise returns the number of real roots found (1 or 3);
rootsp - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
rootsp - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Ropt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexOptions: < dimension of the observation space, y_t.
Ropt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
Rosenbrock() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock
ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.Lmmin
ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.LsqFit
ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NESolve
ROSENBROCK - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
Rosenbrock2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Rosenbrock2
Roszman1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Roszman1CostFunction
Roszman1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Roszman1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
rot - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails
rot - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Arrays used for producing graphs for DOF == 3 and register to reference image.
rot - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Arrays used for producing graphs for DOF == 6 and register to average or reference image.
rot - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Arrays used for producing graphs for DOF == 3 and register to reference image.
rot - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Arrays used for producing graphs for DOF == 6 and register to average or reference image.
rot180(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
rotate(double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
rotate(double, LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
rotate(Vector3f, Vector3f, int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: rotate along a given axis, point and rotation angle.
Rotate(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: rotate shape with given theta angle
Rotate(double, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Rotates the shape.
ROTATE - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback: DOCUMENT ME!
ROTATE - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the VOI cursor is in translate mode
ROTATE_LEFTBUTTON - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback: Added so that Probe Rotation with the left and right mouse buttons could be distinguised.
rotate_turn_rep(TURN_REP, int, TURN_REP) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
rotate180 - Variable in class gov.nih.mipav.model.file.FileSVS
rotate180 - Variable in class gov.nih.mipav.model.file.FileTiff
rotateAboutXAxis() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
rotateAboutYAxis() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
rotateAboutZAxis() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
rotateAlgo - Variable in class gov.nih.mipav.model.file.FileSVS
rotateAlgo - Variable in class gov.nih.mipav.model.file.FileTiff
rotateAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogRotate: DOCUMENT ME!
rotateAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogRotate: Rotation axis.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Coarse and fine sampling parameters.
rotateBegin - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBegin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
rotateBegin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
rotateBegin - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
rotateBeginText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
rotateBeginText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
rotateBeginText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
rotateBeginTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateBeginTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateBeginTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateBeginTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateBeginX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Coarse and fine sampling parameters.
rotateBeginX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Coarse and fine sampling parameters.
rotateBeginX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Coarse and fine sampling parameters.
rotateBeginX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Coarse and fine sampling parameters.
rotateBeginX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
rotateBeginX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateBeginY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateBeginY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateBeginZ - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateBeginZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateBeginZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
rotateButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
rotateBy(AxisAngle4f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Rotate the oriented bounding box of the 3D image about the specified axis with the specified angle.
rotateBy(AxisAngle4f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
rotateBy(AxisAngle4f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Rotate the oriented bounding box of the 3D image about the specified axis with the specified angle.
rotatedPoints - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Coarse and fine sampling parameters.
rotateEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
rotateEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
rotateEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
rotateEndText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
rotateEndText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
rotateEndText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
rotateEndTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateEndTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndTextX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateEndTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndTextY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateEndTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndTextZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndX - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateEndX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Coarse and fine sampling parameters.
rotateEndX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Coarse and fine sampling parameters.
rotateEndX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
rotateEndX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndX - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateEndY - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateEndY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
rotateEndY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
rotateEndY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateEndY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndY - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateEndZ - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: registration option parameters
rotateEndZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
rotateEndZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
rotateEndZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateEndZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateEndZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateEndZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
rotateFrameBy(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Rotate the oriented bounding box of the 3D image about the specified axis with the specified angle.
rotateFrameBy(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer: DOCUMENT ME!
rotateFrameBy(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: Rotate the oriented bounding box of the 3D image about the specified axis with the specified angle.
rotateImage() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Rotates the image volume when the camera manually takes snapshot.
rotateImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Override the parent rotateImage method to rotate the MIP image volume.
rotateImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the rotateImage to rotate the surface volume.
rotateImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the rotateImage to rotate the surface volume.
rotateImage() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent rotateImage method to rotate the MIP image volume.
rotateMinus90 - Variable in class gov.nih.mipav.model.file.FileSVS
rotateMinus90 - Variable in class gov.nih.mipav.model.file.FileTiff
rotatePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Variables for Rotation and Translation bounds.
rotatePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
rotatePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotatePlus90 - Variable in class gov.nih.mipav.model.file.FileSVS
rotatePlus90 - Variable in class gov.nih.mipav.model.file.FileTiff
rotateRangePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateRangePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateRangePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateRangePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateRangePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateRangePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateRangePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateRangePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
rotateRangePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
rotateRangeX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Coarse and fine sampling parameters.
rotateRangeX - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Coarse and fine sampling parameters.
rotateRangeX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
rotateRangeY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
rotateRangeY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
rotateRangeY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateRangeZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
rotateRangeZ - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
rotateRangeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
rotateToStartingPoint_leftMost(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Re-oriented the starting and ending VOIs.
rotateToStartingPoint_yMid(float[], float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Re-oriented the starting and ending VOIs.
rotatex(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: rotate along x axis with given sin, cos value of the rotatino angle.
rotatex(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: rotate along x axis with given rotation angle in degree.
rotatey(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Rotate along the y axis with given sin, cos value of the rotation angle.
rotatey(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: rotate along y axis with given rotation angle in degree.
rotatez(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: Rotate along the z axis with given sin, cos value of the rotation angle.
rotatez(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix: rotate along z axis with given rotation angle in degree.
rotationAlpha - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
rotationalSymm(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: rotationsl symmetry
rotationAngle - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Rotation angle when the camera takes snapshot.
RotationAngleAxisToQuaterionAndBack() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationAngleAxisToRotationMatrixAndBack() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationAngleAxisToRotationMatrixAndBackNearZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationAtPiAngleAxisRoundTrip() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rotationAxis - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Rotation axis to sync up the action for both ModelClip arbitrary clipping plane and the clipSliceA frame box transformGroup.
rotationAxis - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Rotation axis when the camera takes snapshot.
rotationAxisGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
rotationBF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
ROTATIONCENTER - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration: The 3 types of markers - rotation center, reference slice, and adjusted slice.
ROTATIONCENTER - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration: The 3 types of markers - rotation center, reference slice, and adjusted slice.
ROTATIONCENTER - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: The 3 types of markers - rotation center, reference slice, and adjusted slice.
rotationCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
rotationControlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Camera control dialog box.
rotationCount - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Counters show the event number in the mouse recorder.
rotationCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: fix one bug from threading.
rotationCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: fix one bug from threading.
rotationCutoff - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used as cutoffs for making space navigator mouse less sensitive to the low range values that may not be intentional user input
rotationCutoffTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM: Text fields that display the sensitivity number next to the sliders.
rotationDirection - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
rotationEvent - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: mouse rotation event vector for the arbitrary clipping plane.
rotationExtent - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
rotationInvariant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
rotationInvariant - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
RotationMatrixToAngleAxis(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
RotationMatrixToAngleAxisExhaustiveRoundTrip() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationMatrixToAngleAxisNearPiExampleOneFromTobiasStrauss() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationMatrixToQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
RotationNearPiAngleAxisRoundTrip() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationNearZeroAngleAxisToRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationQuaterionToAngleAxisAndBack() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationQuaternionToAngleAxisAngleIsLessThanPi() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rotationRedlineBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Entry point rotation redline branch group.
rotationRedLineshape - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: roation red guide line shape.
RotationSamples - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
rotationScaleFactor - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: used for slowing down the rate that the 3D mouse moves the image
RotationSmallAngleAxisToQuaternion() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationSmallQuaternionToAngleAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rotationText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Brute-force registration parameters:.
rotationTimes - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Number of rotation during the camera auto snapshotting.
RotationTinyAngleAxisToQuaternion() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationTinyQuaternionToAngleAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rotationTotal - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The total rotation degree, fixing one bug.
RotationUnitQuaternionToAngleAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationXRotationToQuaternion() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationXRotationToRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationYRotationQuaternionToAngleAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationYRotationToRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationZeroAngleAxisToQuaternion() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationZeroAngleAxisToRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationZRotationQuaternionToAngleAxis() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RotationZRotationToRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
rotCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
rotCenterMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: number of VOIs for rotation center
rotOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
rotPower - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
rotScalar - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
round - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.tImage
round - Variable in class gov.nih.mipav.model.file.FileGESigna4X
round - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
round(double) - Static method in class gov.nih.mipav.util.MipavMath: Round the value of type double to the closest integer.
round(float) - Static method in class gov.nih.mipav.util.MipavMath: Round the value of type float to the closest integer.
round(Double, int) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
Round() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes round() of each element.
ROUND_EPS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
roundness - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
roundToNextMultiple(int, int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
roundUp(int, int) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
roundUp(long, long) - Static method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
routine - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
routine - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3: DOCUMENT ME!
routine - Variable in class gov.nih.mipav.model.algorithms.Integration2: DOCUMENT ME!
routine - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: DOCUMENT ME!
routine - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
routineTagEntry - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
routineTagGroup - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
row - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexRowColItem
row - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexRowItem
row - Variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
row - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
row - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
row - Static variable in class gov.nih.mipav.view.DICOMDisplayer: DOCUMENT ME!
Row(int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Row: Creates a new Row object.
Row(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
Row(int, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Return the i-th row of the matrix.
ROW - gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
row_begin - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
row_begin_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions
row_block_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions
row_blocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
row_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
row_counts_int - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
row_dependent - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
row_dependent - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: indicates which--row or column--should be dependent on the other.
row_dependent - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Indicates which--row or column--should be dependent on the other.
row_disp - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
row_end_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid2D
row_index - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer
row_sum(double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
rowBFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: each z slice in 4D images.
rowBFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: values obtained from settings.
rowButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
RowColLessThanComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.RowColLessThanComparator
rowComparator() - Constructor for class gov.nih.mipav.model.algorithms.NoiseLevel.rowComparator
rowCopy(boolean[], int, boolean[], int, int, int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a row in x, y or z direction to an array.
rowCopy(double[], int, double[], int, int, int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a row in x, y or z direction to an array.
RowData(boolean, String, String, String) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
RowData(boolean, String, String, String, Collection<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
rowDerivativeMask5By5(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
rowDerivativeMask7By7(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
rowElements - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction
rowElements - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction
rowgroup_ctr - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
rowgroup_height - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
rowgroups_avail - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
rowind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCformat
rowind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NCPformat
rowind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
rowind - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
rowind_colbeg - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
rowind_colend - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat
rowind_colptr - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat
rowLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
rowNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
rowNumber - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.PatternDetection
rowPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
RowPerm - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t
ROWPERM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType
rowperm_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t
rowptr - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc
rowptr - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat
rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowBlockStructure
rows - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix
rows - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
rows - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
rows - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: Slice Header data structure format.
rows - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
rows - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
rows() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
Rows() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
rows_in_array - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
rows_in_array - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
rows_in_mem - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
rows_in_mem - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
ROWS_PER_STRIP - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ROWS_PER_STRIP - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
ROWS_PER_STRIP - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
ROWS_PER_STRIP - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
rows_to_go - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
rows_to_go - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample
rowSizes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
rowsperchunk - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
rowsperchunk - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
rowsPerStrip - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
rowsPerStrip - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
rowsPerStrip - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
rowSpliterator() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase: Creates a Spliterator that guarantees that each split will at least cover an entire row of the Img.
RowSpliterator(int, int, int, int, Supplier) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator: Creates a new RowSpliterator for iterating the pixels in the specified area.
rowText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
RowVectorX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RowVectorY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
RowVectorZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
rp - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
rparam(double[][], double[], double[], double[][], double[][], double[], int[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
RPCPortNum - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
rpfun(double[], int, double[], double[][], int[], int[], boolean[], double[][], int[]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
rplot(double[][], double[], double[][], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
rpn - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
rptmul(int, int[], double[][], int, int, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
rptrnsfm(double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
RQUPH - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
rr - Variable in class gov.nih.mipav.model.file.FileInfoAfni: rr is the dicom ordered original image Talairach center location.
rR2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
rrArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
RRCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
RRCyclesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
RRHistogram - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
RRHistogramIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
RRRGGGBBB - Static variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
rRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: currently running.
rRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: currently running.
rs - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
rs - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
rs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
rs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
rs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
rs - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
rs - Variable in class gov.nih.mipav.model.algorithms.NL2sol
rs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
rs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
rs - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
rs - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
rs - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
rsiz - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t: Rsiz
rSliceAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: DOCUMENT ME!
rslst - Variable in class gov.nih.mipav.model.algorithms.Integration2: In dqawfe vector of dimension at least limlst. rslst[k-1] contains the integral contribution over the interval (a+(k-1)c, a+kc), where c = (2*int(abs(omega))+1)*pi/abs(omega), k = 1, 2, ..., lst.
rslst - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: In dqawfe vector of dimension at least limlst. rslst[k-1] contains the integral contribution over the interval (a+(k-1)c, a+kc), where c = (2*int(abs(omega))+1)*pi/abs(omega), k = 1, 2, ..., lst.
RSLT71(int[], double, double[], int, int[], int[], double[], int, int[], int[], int, boolean, double, double, double[], int[], int[], int, double[], int[], double[], double, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RSLT72(int[], double, double, int, int[], int[], int[], int, boolean, double, double, int[], int[], int, int[], double[], double, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RSLT80(double, double, double, boolean, int, int, int, boolean, int, int, double, double[], double[], boolean[], int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RSLT83(double[], int, double, double[], int, int[], int[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RSLT84(double[], int, double, double[], int, int[], int[], int[], int[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
RSNCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
rSquared - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: R squared
RST0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
RST7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
RST7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
rstatus - Variable in enum gov.nih.mipav.model.structures.jama.METIS.rstatus_et
rstatus_et(int) - Constructor for enum gov.nih.mipav.model.structures.jama.METIS.rstatus_et
rStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.rStop: Creates a new rStop object.
rStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.rStop: Creates a new rStop object.
Rt() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Pose parameter update prediction matrix.
RT2INV - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
RTABLE - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: R-table (*.rtb)
RTCEntry - Class in gov.nih.mipav.model.dicomcomm: DOCUMENT ME!
RTCEntry(int, int, int, String, int) - Constructor for class gov.nih.mipav.model.dicomcomm.RTCEntry: Loads the inputted variabels straight into the class.
rtcList - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: array of RTC Entries:.
Rtf - gov.nih.mipav.model.file.MetadataExtractor.FileType
RTF_FORMAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogText: Specifies the output display of the text-box to be formatted using the RTF rules.
RTFOUND - Variable in class gov.nih.mipav.model.algorithms.CVODES
rThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: fitted line to secondBuffer = a*buffer + b;.
rThreshold - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
rThreshold - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: The linear correlation coefficients for all pixels with values either below color1 for buffer or below a*color1 + b for secondBuffer.
rtPoint - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 834 repiratory trigger point as percent of max.
rTPos - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
rtrw1(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
rtrw1(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
rtx - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
rtx - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rty - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
rty - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
rtype - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
rtz - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
rtz - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
Rubberband - Class in gov.nih.mipav.view: An abstract base class for rubberbands.
Rubberband() - Constructor for class gov.nih.mipav.view.Rubberband: Default constructor, does nothing.
Rubberband(Component) - Constructor for class gov.nih.mipav.view.Rubberband: Sets the parent component that the rubberband is for.
RubberbandEllipse - Class in gov.nih.mipav.view: A Rubberband that does ellipses.
RubberbandEllipse(Component) - Constructor for class gov.nih.mipav.view.RubberbandEllipse: Constructs rubberbandEllipse.
RubberbandLine - Class in gov.nih.mipav.view: A Rubberband that does lines.
RubberbandLine(Component) - Constructor for class gov.nih.mipav.view.RubberbandLine: Constructs a rubberbanded line and dds mouse listeners.
RubberbandLivewire - Class in gov.nih.mipav.view: A Livewire rubberband.
RubberbandLivewire(Component, float[], float[], float, float, boolean) - Constructor for class gov.nih.mipav.view.RubberbandLivewire: Sets up local costs graph by calling AlgorithmGradientMagnitudeSep and AlgorithmEdgeLaplacianSep.
RubberbandLivewire(Component, int) - Constructor for class gov.nih.mipav.view.RubberbandLivewire: Sets up local costs graph by calling AlgorithmGradientMagnitude and AlgorithmEdgeLaplacianSep.
RubberbandLivewire.ActiveTree - Class in gov.nih.mipav.view: Binary search tree, modified so it will work with elements that have the same cost.
RubberbandLivewire.TreeNode - Class in gov.nih.mipav.view: Tree node.
RubberbandPolyline - Class in gov.nih.mipav.view: A Rubberband that does polylines and polygons.
RubberbandPolyline(Component) - Constructor for class gov.nih.mipav.view.RubberbandPolyline: Constructs the object and adds mouse listeners.
RubberbandProtractor - Class in gov.nih.mipav.view: A Rubberband that does protractors.
RubberbandProtractor(Component) - Constructor for class gov.nih.mipav.view.RubberbandProtractor: Creates a new RubberbandProtractor object.
rubberbandRect - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
RubberbandRectangle - Class in gov.nih.mipav.view: A Rubberband that does rectangles.
RubberbandRectangle() - Constructor for class gov.nih.mipav.view.RubberbandRectangle: Constructor.
RubberbandRectangle(Component) - Constructor for class gov.nih.mipav.view.RubberbandRectangle: Creates a new RubberbandRectangle object.
RubberbandRectangleVOI - Class in gov.nih.mipav.view: A Rubberband that does rectangles.
RubberbandRectangleVOI(Component) - Constructor for class gov.nih.mipav.view.RubberbandRectangleVOI: Creates a new RubberbandRectangleVOI object.
rule_t(int) - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.rule_t
ruleNum - Variable in enum gov.nih.mipav.model.structures.jama.SuperLU.rule_t
ruleNum() - Method in enum gov.nih.mipav.model.structures.jama.SuperLU.rule_t
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Performs start-up and tear-down operations that should be done by all algorithms (timing, history log).
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner
run() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
run() - Method in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
run() - Method in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
run() - Method in class gov.nih.mipav.model.algorithms.Cephes
run() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
run() - Method in class gov.nih.mipav.model.algorithms.ConjugateGradient
run() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
run() - Method in class gov.nih.mipav.model.algorithms.CubicEquation
run() - Method in class gov.nih.mipav.model.algorithms.curev
run() - Method in class gov.nih.mipav.model.algorithms.curfit
run() - Method in class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest
run() - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec1_th
run() - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec2_th
run() - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
run() - Method in class gov.nih.mipav.model.algorithms.Gamma
run() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric
run() - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic
run() - Method in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
run() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
run() - Method in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
run() - Method in class gov.nih.mipav.model.algorithms.Psi
run() - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
run() - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
run() - Method in class gov.nih.mipav.model.algorithms.splev
run() - Method in class gov.nih.mipav.model.algorithms.sproot
run() - Method in class gov.nih.mipav.model.algorithms.Statistics
run() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.computeTreePermutationImportanceInThread
run() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.growTreesInThread
run() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictInternalInThread
run() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictTreesInThread
run() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.showProgress
run() - Method in class gov.nih.mipav.model.algorithms.WishartVariateGenerator
run() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move: Runs this move request in a separate thread.
run() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query: Runs this query in a separate thread.
run() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Run method so that this receiver can execute in its own thread.
run() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Runs this move request in a separate thread.
run() - Method in class gov.nih.mipav.model.file.FileDeleter: Run method: if the file exists, try deleting it. if the delete fails, then sleep for 2 seconds and start again.
run() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW: Runs the decoder.
run() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor: Runs the decoder.
run() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Runs the encoder.
run() - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Runs the encoder.
run() - Method in class gov.nih.mipav.model.scripting.ScriptRunner.ScriptThread: Start execution of the script.
run() - Method in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
run() - Method in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
run() - Method in interface gov.nih.mipav.plugins.PlugInGeneric: The main method used to start the generic plugin.
run() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: Specified by Thread. processes each directory selected directory, pausing after processing each selected directory to allow other threads run.
run() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
run() - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids
run() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
run() - Method in class gov.nih.mipav.view.dialogs.MultiPaintAutoSave: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.dialogs.PaintAutoSave: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ImageRegistryMonitor: when the thread wakes up, it collects information from the runtime on current memory status.
run() - Method in class gov.nih.mipav.view.LineMeter: when the thread wakes up, if the panel is showing, it will repaint panel, scrolling the graph.
run() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.PlayMouse: Runs the thread and plays according to the established parameters.
run() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.PlayMouse: Runs the thread and plays according to the established parameters.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: Runs the mouse recorder.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse: Runs the thread and plays according to the established parameters.
run() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: Runs the mouse recorder.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Item
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning: Runs the thread.
run() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse: Runs the thread.
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.CBackForward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.cbfStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.CForward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.cfStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.CReverse: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.crStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.Forward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.fStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.Reverse: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimate.rStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.CBackForward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.cbfStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.CForward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.cfStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.CReverse: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.crStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.Forward: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.fStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.Reverse: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip.rStop: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameFastMarching2: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameFastMarching3: DOCUMENT ME!
run() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: when the thread wakes up, it collects information from the runtime on current memory status.
run(boolean) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
run(int) - Method in class gov.nih.mipav.plugins.PlugInBundle: Runs the plugin whose name is given by the location in the vector returned by getBundledPlugIns().
run(int, double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
run(Features[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
run(Frame, ModelImage) - Method in interface gov.nih.mipav.plugins.PlugInAlgorithm: Run the plugin algorithm.
run(Frame, ModelImage) - Method in interface gov.nih.mipav.plugins.PlugInView: run.
run(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Predict
run(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
run(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale
run(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
run(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
run(String, String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
run(List<Double>, List<svm_node[]>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
run(List<Integer>, List<FeatureNode[]>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
run_svm_predict(String[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
run_svm_scale(String[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
run_svm_toy(String[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
run_svm_train(double[][], double[], String[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
run_svm_train(String[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
run1Slice(ImgReaderRAWColorSlice) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Runs the encoder.
run1Slice(ImgReaderRAWSlice) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Runs the encoder.
run1Slice(RandomAccessIO) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW
run1Slice(RandomAccessIO) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor
run2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
run2D - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Begins the execution of the 2D convolver.
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Begins the execution of the 2D convolver.
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
run2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
run2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
run2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
run2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
run2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Starts the algorithm for 2D images.
run2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Iterates the Regularized Isotropic Nonlinear Diffusion algorithm for 2D and 2.5D images.
run2Da2m2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run2DC(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Starts the algorithm for 2D images.
run2DC(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Iterates the Regularized Isotropic Nonlinear Diffusion algorithm for 2D and 2.5D color images.
run2Dm2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run2Dm3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run2DRician() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
run2DSelfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Begins the execution of the 3D convolver.
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Begins the execution of the 3D convolver.
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
run3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
run3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Starts the algorithm for 3D images.
run3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
run3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
run3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Iterates the Regularized Isotropic Nonlinear Diffusion algorithm for 3D images.
run3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
run3Da2m2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run3DC() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Starts the algorithm for 3D color images.
run3DC() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Iterates the Regularized Isotropic Nonlinear Diffusion algorithm for 3D color images.
run3Dm2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run3Dm3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
run3DRician() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
run3DSelfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
run4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
run4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
RUNA - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: starts the snake algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Actually runs the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Starts the smooth algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Starts the snake algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: Default method that is not really appropriate for this class but must be defined because this class extends AlgorithmBase.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Runs ELSUNC along one dimension at a time as long as the costFunction improves during one cycle of runs along every dimension.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Runs Powell's method.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvergenceField
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Begins execution of the convolver.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Begins execution of the convolver.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Starts the smooth algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Run the de-facing algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Starts the snake algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Runs the algorithm; calls either calcQuadSurface or calcTriangleSurface, depending on the mesh parameter set in the constructor.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: run - default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHessian: Should not be used for this algorithm -- just a placeholder.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Calculates the histogram.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLLE: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: algorithm's run function....
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Starts the smooth algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Runs Powell's method.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuantify: Starts the program
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: run - default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Starts the convolution of the source image with the provided kernel.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSFTA
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Run the de-facing algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: run - starts the snake algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThinning2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: run - starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: Begins execution of the software.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Run the algorithm on a polygon already specified through the constructor.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: Default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.Backpropagation
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.ContourPlot
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.Covdet
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Run the DTI -> EigenVector Functional Anisotropy algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: run algorithm *
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Run the DTI -> EigenVector Functional Anisotropy algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Calculate the DTI image.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Start the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: Standard algorithm run method.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature: starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Starts the nonlocal means filter algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Standard algorithm run method.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Starts the nonlocal means filter algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.HaarTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.HornSchunk
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.libdt: #include #include #include #include #include #include #include #include "opencv/cv.h" #include "opencv/cxcore.h" #include "opencv/highgui.h" #include "options.h" #include "utils/libutils.h" #include "stats/libstats.h" #include "video/libvideo.h" #include "dytex/libdytex.h" #include "platInd/platInd.hpp" #include "bufferer/Bufferer.hpp" using namespace cv; using namespace std;
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.LIBSVM
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.LightboxGenerator: Accessor that returns the number of image slices saved.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.LSCM
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.LSQR
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.MotionDetection
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.NLMeans_filt2D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.NoiseLevel
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.Quaternions
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.RectangularConformalMap
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: AlgorithmBase abstract method implementation which performs the registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: AlgorithmBase abstract method implementation which performs the registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: AlgorithmBase abstract method implementation which performs the registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Runs the image registration.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SIFT
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SIFT3D
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SlantTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.StochasticForests
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SVM
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: Run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Runs the add image margins algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Start algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: run algorithm
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Runs algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Starts the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Calculates the final output.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Calculates the final output.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Runs the flip algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Runs algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Runs algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Runs the Intensity Projection algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Starts algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates the final output.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: Where algorithm calculates the final output.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages: Actually runs the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Function called by thread to run the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice: Actually runs the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Actually runs the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Runs the rotation algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Subsample the image.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: Runs the algorithm.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Starts the program.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Calculates the final output.
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2
runAlgorithm() - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
runAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage.AlgorithmLoadB: DOCUMENT ME!
runAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: run algorithm *
runAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans: Runs algorithm.
runAlgorithm25D() - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
runAlgorithm2D() - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
runAlgorithm3D() - Method in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
runAlgorithmDICOM() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: run algorithm for dicom
runAlgorithmPARREC() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: run algorithm for par/rec
runAlgorithmPrevious() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: Starts the program.
runAlgorithmTest() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
runAllSlices() - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW
runAllSlices(int, int, boolean, ViewJProgressBar, FileWriteOptions, int) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW: Now see what happens.
runAllSlices(int, int, boolean, ViewJProgressBar, FileWriteOptions, int) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor: Now see what happens.
runAnonymization() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
runAutoDiffCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RUNB - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
RunBallPivoting - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
RunBallPivoting() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.RunBallPivoting
runBardFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBatch2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Algorithm is given a scale range and scale increment and computed the 1) hessian, 2) eigenvalues, 3) eigenvectors of the hessian.
runBatch3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
runBatchButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
runBealeFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBennett5CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runBIGGS_EXP6Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBox3DFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBoxBODCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runBrownAndDennisFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBrownBadlyScaledFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runBW() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
RunCallbacks(CeresSolver.MinimizerOptions, CeresSolver.IterationSummary, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Minimizer
RunCallbacks(CeresSolver.MinimizerOptions, CeresSolver.IterationSummary, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Run Coherance Enhanced Diffusion (CED) filter on all the MRI axial, sagittal and coronal images.
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
runCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
runCED(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
runCED(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
runCED(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
runCED(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
runCED(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
runCED_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
runCED_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
runCED_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
runCED_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runCED_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runcel12 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
runChiwrut1CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runChiwrut2CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runCmdLine(String, Vector<ViewUserInterface.OpenFileInfo>, Vector<Vector<String>>) - Method in class gov.nih.mipav.view.ViewUserInterface: This method is used when running MIPAV from the command line.
runColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
runColorImage() - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
runcomelp - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
runComplex() - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
runComplex() - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
runConversion(String) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Opens a dicom image, checks to see if it is 3d, adds margins if the image dimensions are not multiples of 4, and saves the image as an AVI with MP42 compression**note - the directory structure is intact with the only difference being that the name of the top level directory now has "_AVI" appended.
runCostFunctions(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: calls the various cost functions
runCrop() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
runCrop() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
runCrop_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
runCrop_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
runCrop_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
runCrop_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runCrop_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runCrossRatioPolygonToCircle() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
runCrossRatioPolygonToRectangle() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
runCubicAlgorithm() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
runCurrentScript() - Method in class gov.nih.mipav.view.ViewControlsImage: Invokes the toolbar builder to run the currently selected script.
runCurrentScript() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Method to run the script currently selected in the scripting toolbar.
runCurveFittingNumericDiffCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runCurveFittingSizedCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runcvsAdvDiff_FSA_non() - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
runcvsDirectDemo_Problem_1() - Method in class gov.nih.mipav.model.algorithms.CVODES
runcvsRoberts_ASAi_dns() - Method in class gov.nih.mipav.model.algorithms.CVODES_ASA
runcvsRoberts_dns() - Method in class gov.nih.mipav.model.algorithms.CVODES
runcvsRoberts_dns_uw() - Method in class gov.nih.mipav.model.algorithms.CVODES
runcvsRoberts_dnsL() - Method in class gov.nih.mipav.model.algorithms.CVODES
runcvsRoberts_FSA_dns() - Method in class gov.nih.mipav.model.algorithms.CVODES
runDanwoodCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runData(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Calculates the histogram and outputs the number of counts per bin and area/volume information.
runDeconvolution(ModelImage, ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Runs the deconvolution algorithm.
runEckerle4CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runelit - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
runEllipticFourierDescriptors(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
runEllipticFourierDescriptorsOpenCurve(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
runELSUNC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Runs ELSUNC along one dimension at a time as long as the costFunction improves during one cycle of runs along every dimension.
runELSUNC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Runs ELSUNC along one dimension at a time as long as the costFunction improves during one cycle of runs along every dimension.
runEM(libdt.DytexMix, Vector<libdt.Mat[]>, libdt.EMOptions) - Method in class gov.nih.mipav.model.algorithms.libdt
runENSOCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runFORTRAN - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
runFORTRAN() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter: Starts the program.
runFreudensteinAndRothFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runFreudensteinAndRothJacobianFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runFromLUTFrame(ModelImage, float[], float[], float[], float[], boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Function to run the threshold algorithm from the ViewJFrameHistoRGB.
runFromLUTFrame(ModelImage, float, float, float, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Function for setting up/running the threshold algorithm from the ViewJFrameHistoLUT.
runFullModelTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runGauss1CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runGauss2CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runGauss3CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runGaussianFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runGaussianPyramid() - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite: runs the gaussian pyramid algorithm
runGeodesicDilationTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
runGeodesicErosionTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
runGrayImage() - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter
runGulfResearchAndDevelopmentFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runHahn1CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runHelicalValleyFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runHEM(libdt.DytexMix, libdt.DytexMix, libdt.HEMOptions, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt
runiFFTonKCenter(ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
runInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
runInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
runInSeparateThread - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Flag indicating if the algorithm should run in a separate thread.
runInSeparateThread - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Flag indicating if the algorithm should run in a separate thread.
runIntegrationTest2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: private void runIntegrationTest2() { IntModel2 imod; double lower = 0.0; double upper = 1.0; int routine = Integration2.DQAGPE; double breakPoints[] = new double[4]; breakPoints[0] = 1.0/7.0; breakPoints[1] = 2.0/3.0; double epsabs = 0.0; double epsrel = 1.0E-4; int limit = 100; double numInt; int errorStatus; double absError; int neval; double eps = 5.0e-7; int steps; imod = new IntModel2(lower, upper, routine, breakPoints, epsabs, epsrel, limit); imod.driver(); numInt = imod.getIntegral(); errorStatus = imod.getErrorStatus(); absError = imod.getAbserr(); neval = imod.getNeval(); Preferences.debug("Numerical Integral = " + numInt + " after " + neval +" integrand evaluations used\n", Preferences.DEBUG_ALGORITHM); Preferences.debug("Error status = " + errorStatus +" with absolute error = " + absError + "\n", Preferences.DEBUG_ALGORITHM);
runItAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
runItButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
runJama() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
runJennrichAndSampsonFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runJTEM() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
runKirby2CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runKowalikAndOsborneFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runLanczos1CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runLanczos2CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runLanczos3CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runLapack() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
runLapTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runLapTest2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runLapTestqd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runLength - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
runLevelSet(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
runLevelSet(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
runLevelSet(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
runLevelSet(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
runLevelSet(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
runLM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Runs Levneberg-Marqaurdt along one dimension at a time as long as the costFunction improves during one cycle of runs along every dimension.
runLM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Runs Levneberg-Marqaurdt along one dimension at a time as long as the costFunction improves during one cycle of runs along every dimension.
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Generated the prostate boundary binary mask images.
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
runMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
runMask_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
runMask_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
runMask_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
runMask_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runMask_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runMATLABVersion() - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
runMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian: DOCUMENT ME!
runMeyerFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runMisralaCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runMisralbCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runMisralcCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runMisraldCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runMorphologicalReconstructionByDilationTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
runNelsonCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runner - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Thread object manager for running receiver.
RunnerThread(Runnable) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Receiver.RunnerThread: Creates a new RunnerThread object.
runningInSeparateThread - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase: Should be set to true if NOT in a single thread - will NOT force a graphics update of the progress bar.
runningInSeparateThread - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
runningScriptFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Whether we are using this dialog as part of a script.
runNL2sol() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
runNL2sol() - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
runNonLinear() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
runNumericDiffCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runOneIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: If true run one iteration so that one can observe initial surface location.
runOsborne1Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runOsborne2Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runPass(ModelSimpleImage, ModelSimpleImage, AlgorithmRegBSpline.Options, BSplineRegistration2Df) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Perform a "pass" of BSpline based registration.
runPass(ModelSimpleImage, ModelSimpleImage, AlgorithmRegBSpline.Options, BSplineRegistration2Df, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: Perform a "pass" of BSpline based registration.
runPass(ModelSimpleImage, ModelSimpleImage, AlgorithmRegBSpline.Options, BSplineRegistration3Df, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: Perform a "pass" of BSpline based registration.
runPolygonExteriorToCircle() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
runPolygonToCircle() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
runPolygonToRectangle() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
RunPolynomialInterpolationTest(int, double, double, double, double, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RunPolynomialInterpolationTest(int, Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
RunPolynomialTestRealRoots(double[], boolean, boolean, double, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runPowellBadlyScaledFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runPowellSingularFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runPowellSingularJacobianFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runPythonVersion() - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
runQuiet - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Whether algorithm is running in quiet mode (such as part of a script, in headless environment, within other algorithm )
runRat42CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runRat43CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runReal() - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
runReal() - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
runRosenbrockExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runRoszman1CostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
runScaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
runScaleIntensity_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
runScaleIntensity_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
runScaleIntensity_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
runScaleIntensity_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runScaleIntensity_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runScript() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: DOCUMENT ME!
runScript(String) - Static method in class gov.nih.mipav.model.scripting.Parser: Parses and runs the commands contained within a given script file.
runScript(String, Vector<String>, Vector<String>) - Method in class gov.nih.mipav.model.scripting.ScriptRunner: Execute a script, using a set of images.
runSizedCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
runSmooth(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Actual function that smooths the voi with bsplines.
runSmooth2(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Actual function that smooths the voi with bsplines.
runSnake(float[], float[], float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Actual function that evolves the boundary.
runSnake(float[], float[], float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Actual function that evolves the boundary.
runSnake(float[], float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Actual function that evolves the boundary.
runSnake(float[], float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
runSnake(float[], float[], float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Actual function that evolves the boundary.
runSnake(float[], float[], float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Actual function that evolves the boundary.
runSnake(float[], float[], float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Actual function that evolves the boundary.
runSnake(float[], float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Actual function that evolves the boundary.
runSnake(float[], float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Actual function that evolves the boundary by moving normal to the boundary.
runTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runTest() - Method in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
runTest() - Method in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
runTest() - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
runTest() - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
runTest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
runTest() - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Test
runTest(double[][][][], double, int, double[][][], String, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
runTest(double[][][], double[][][], double, int, double[][], String, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
runTest(int, double[][][][][], double, int, double[][][][], boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
runTest24D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
runThurberCostFunctionExample() - Method in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
runTraditionalAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: Starts the program.
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
runTransform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
runTransform_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
runTransform_ext() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
runVabra() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Run the VABRA registration.
runWoodFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Rval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions: < Regularization method for S.
rvalue - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
RW_LOCKED - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the buffer is locked from reading.
Rw2 - gov.nih.mipav.model.file.MetadataExtractor.FileType: Panasonic camera raw.
rX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
rX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience
rxAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Actual button indices
rY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
rY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience
ryAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Actual button indices
rZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
rZ - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience
rzAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController: Actual button indices
RZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes

S

s - Variable in class gov.nih.mipav.model.algorithms.curfit

s - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

s - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

s - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint

< y coordinate.

s - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

s - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint

s - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr

s - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition

Array for internal storage of singular values.

s - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.LEG

S - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.LandData

S - Static variable in class gov.nih.mipav.model.algorithms.Cephes

S - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

S - Variable in class gov.nih.mipav.model.algorithms.SIFT

S - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< number of octaves.

S - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

S - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach

DOCUMENT ME!

s_adIntLog - Static variable in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation

Table with precalculated logarithms.

S_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an s clip slice.

S_CLIPSLICE_NEG - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an s clip slice.

S_COPPER - gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap

s_derivatives(double[], double[], double[], double[], double[], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

s_derivatives_c(double[], double[], double[], double[], double[], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

s_fVerboseOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

s_kBlack - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

A black sphere is off.

s_max - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< minimum level index.

S_METRIC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

S_METRIC - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

s_min - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< minimum octave index.

s_offset0 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset0 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset1 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset1 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset10 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset11 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset12 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset13 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset14 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset15 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset2 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset2 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset3 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset3 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset4 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset4 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset5 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset5 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset6 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset6 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset7 - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

s_offset7 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset8 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

s_offset9 - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

S_STAR_METRIC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

S0 - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex

< state noise covariance

S0_nSamplesMax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

S0_nSamplesMin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

S0_thresh - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

S0map - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

S16BIT - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

S1SHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

s2pi - Static variable in class gov.nih.mipav.model.algorithms.Cephes

S2SHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

S3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Spot 3

S5 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Spot 5

S7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Spot 7

S8BIT - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

SA - Variable in class gov.nih.mipav.model.algorithms.WishartVariateGenerator

safeThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

safetyFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

safmin - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

DOCUMENT ME!

safmin - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

DOCUMENT ME!

safmn2 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

DOCUMENT ME!

safmn2 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

DOCUMENT ME!

safmx2 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

DOCUMENT ME!

safmx2 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

DOCUMENT ME!

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Saggital - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Sagittal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Sagittal image type

Sagittal - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Sagittal image type

SAGITTAL - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

SAGITTAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Sagittal orientation.

SAGITTAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

SAGITTAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

SAGITTAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

SAGITTAL_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

SAGITTAL_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

sagittal_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

SAGITTAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient

SAGITTAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

SAGITTAL_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

SAGITTAL_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

sagittalList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

sagittalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

sagittalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

sagittalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

sagittalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

sagittalMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

sagittalSinusButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

sagittalSinusIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

sagittalSinusIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

SagittalVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Sagittal VOI instance

sagmu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SAGMU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

sakTypeName - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Light constant types array.

sAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

DOCUMENT ME!

sAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

sAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

DOCUMENT ME!

sAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

sAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

DOCUMENT ME!

saliency - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems

saliencyText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

sam() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

sam_mean - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

SAME_INPUT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

DOCUMENT ME!

sameAxis(int, int) - Static method in class gov.nih.mipav.model.file.FileInfoBase

Helper method to determine if axis A and axis B are the same axis: that is, if both are the patient x-axis, they will be either R2L or L2R.

sameButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

sameflag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

sameImage - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

SamePattern - gov.nih.mipav.model.structures.jama.SuperLU.fact_t

SamePattern_SameRowPerm - gov.nih.mipav.model.structures.jama.SuperLU.fact_t

sameSliceScalings - Variable in class gov.nih.mipav.model.file.FilePARREC

True if the 3 values are the same for all slices

sameZPosition - Variable in class gov.nih.mipav.model.file.FileInfoSTK

DOCUMENT ME!

SAMP_AND_ACC(SIFT3D.Image, SIFT3D.Image, double, double[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SAMPLE_FORMAT - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SAMPLE_FORMAT - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

SAMPLE_FORMAT - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

SAMPLE_FORMAT - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

sample_fraction - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

sample_fraction - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

sample_fraction - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

sample_hist(double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

sample_range_limit8 - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

sample_range_limit9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

sample_with_replacement - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

sample_with_replacement - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

sample_with_replacement - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

sampleCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

sampleCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

sampleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

sampleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

sampleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

sampleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

sampleExternRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

elements.

sampleIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

sampleIDs_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

sampleIDs_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

sampleIDs_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification

sampleIDs_per_class - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability

sampleImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

sampleImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

sampleImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

SampleLimit - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

sampleNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct

sampleNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

sampleRate - Variable in class gov.nih.mipav.view.LineMeter

DOCUMENT ME!

sampleRate - Variable in class gov.nih.mipav.view.ViewJFrameMemory

DOCUMENT ME!

sampleRate - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages

The rate at which to update imageList

SAMPLES_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SAMPLES_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

SAMPLES_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

SAMPLES_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

SampleShape(ModelSimpleImage, CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Wrapper to build a texture vector from an image and a shape.

SampleShape(ModelSimpleImage, CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Wrapper to build a texture vector from an image and a shape.

SampleShape(ModelSimpleImage, CAAMShape, CDVector, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Wrapper to build a texture vector from an image and a shape.

SampleShape(ModelSimpleImage, CAAMShape, CDVector, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Builds a texture vector from an image and a shape.

sampleSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction

DOCUMENT ME!

sampleSize - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Sample size.

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileLSM

private short nDirEntries;.

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

samplesPerPixel - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

samplesPerPixel - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder

DOCUMENT ME!

samplesperrow - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control

samplesPerUpdate - Variable in class gov.nih.mipav.view.LineMeter

DOCUMENT ME!

SamplesToCoefficients(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

SamplesToCoefficients2D(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

SampleTextures(CAAMShapeCollection, Vector<CDVector>, CAAMReferenceFrame, int, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Samples a set of texture vectors given a set of shape in absolute (i.e. image) coordinates.

SampleTextures(CAAMShapeCollection, Vector<CDVector>, CAAMReferenceFrame, int, boolean, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Samples a set of texture vectors given a set of shape in absolute (i.e. image) coordinates.

samplingPlanes - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

SamsungType2MakernoteDescriptor(MetadataExtractor.SamsungType2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDescriptor

SamsungType2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

SanyoMakernoteDescriptor(MetadataExtractor.SanyoMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDescriptor

SanyoMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

SAR - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

sarAvg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

230 Average SAR.

sarAvgHead - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

854 Avg head SAR.

SARMonitored - Variable in class gov.nih.mipav.model.file.FileGESigna4X

SARMonitored - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sarPeak - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

234 Peak SAR.

sat - Variable in class gov.nih.mipav.model.file.FileZVI

SAT_COR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Indicates that the image is in Sagittal or Coronal orientation.

sat_thresh - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

satbits - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

552 Bitmap of SAT selections.

satBluePanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

satBluePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

satBlueSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

various sliders in dialog *

satBlueSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

various sliders in dialog *

satBlueTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

textfields *

satBlueTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

textfields *

satSelections - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satSelections - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satSelectionsString - Variable in class gov.nih.mipav.model.file.FileGESigna4X

saturation - Variable in class gov.nih.mipav.model.file.FileSVS

saturation - Variable in class gov.nih.mipav.model.file.FileTiff

satVsThetaPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

satVsThetaPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

satVsThetaSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

various sliders in dialog *

satVsThetaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

various sliders in dialog *

satVsThetaTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

textfields *

satVsThetaTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

textfields *

satxloc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

556 R-side pulse rel to lndmrk.

satXLoc1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satXLoc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satxloc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

558 L-side pulse rel to lndmrk.

satXLoc2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satXLoc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satxthick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

568 Thickness of X-axis SAT pulse.

satXThick - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satXThick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satyloc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

560 A-side SAT pulse rel to lndmrk.

satYLoc1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satYLoc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satyloc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

562 P-side SAT pulse rel to lndmrk.

satYLoc2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satYLoc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satythick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

570 Thickness of Y-axis SAT pulse.

satYThick - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satYThick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satzloc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

564 S-side SAT pulse rel to lndmrk.

satZLoc1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satZLoc1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satzloc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

566 I-side SAT pulse rel to lndmrk.

satZLoc2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satZLoc2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

satzthick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

572 Thickness of Z-axis SAT pulse.

satZThick - Variable in class gov.nih.mipav.model.file.FileGESigna4X

satZThick - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

savable_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.savable_state

save - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

save - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Flag that indicates whether to save capture as file.

save - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

DOCUMENT ME!

save - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

save() - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance

save() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Saves the script as a text file; calls the appropriate save dialogs to do so.

save() - Static method in class gov.nih.mipav.view.Preferences

Saves preference file to the user's 'home' directory.

save() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Saves the mouse actions as an object file.

save() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Saves the mouse actions as an object file.

save() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Calls a file chooser then writes the quad mesh to that file.

save() - Method in class gov.nih.mipav.view.ViewJFrameGraph

Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file.

save(FileWriteOptions, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(FileWriteOptions, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(FileWriteOptions, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(FileWriteOptions, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Save the sculpted volume.

save(FileWriteOptions, int) - Method in class gov.nih.mipav.view.ViewJFrameBase

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(ModelImage, FileWriteOptions, int) - Method in class gov.nih.mipav.view.ViewJFrameBase

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(ModelImage, FileWriteOptions, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

Creates save dialog so that the image can be saved // This should be moved to imageModel.save();

save(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

see Linear.saveModel(java.io.File, Model)

save(RandomAccessFile) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelCollapseRecord

Support for saving the collapse records to a binary file.

save(RandomAccessFile, boolean, int[], float[], float[], TransMatrix) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh

Internal support for 'void save (String)' and 'void save (String, ModelTriangleMesh[])'.

save(RandomAccessFile, boolean, int[], float[], float[], TransMatrix, Color4f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Internal support for 'void save (String)' and 'void save (String, ModelTriangleMesh[])'.

save(RandomAccessFile, ViewJProgressBar, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

Internal support for 'void save (String)' and 'void save (String, ModelQuadMesh[])'.

save(Writer) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

see Linear.saveModel(Writer, Model)

save(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

save(String) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file.

save(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Saves the tab's text to a file "Tabname_currenttimems.txt"

save(String, boolean, int[], float[], float[], TransMatrix) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Save the triangle mesh to a binary file.

save(String, ModelClodMesh[], boolean, int[], float[], float[], TransMatrix) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh

Save an array of triangle meshes to a binary file.

save(String, ModelQuadMesh[], ViewJProgressBar) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

Save an array of quad meshes to a binary file.

save(String, ModelTriangleMesh[], boolean, int[], float[], float[], TransMatrix, Color4f[][]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Save an array of triangle meshes to a binary file.

save(String, ViewJProgressBar, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

Save the quad mesh to a binary file.

save(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Saves the tab's text to a file "Tabname_currenttimems.txt"

save(String, TriMesh, int, VertexBuffer, boolean, int[], float[], float[], TransMatrix) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save a TriMesh to disk

save(String, TriMesh, ModelImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

SAVE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

save_ClassSig(AlgorithmGaussianMixtureModelEM.ClassSig, AlgorithmGaussianMixtureModelEM.SigSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

SAVE_DEFAULT - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase

Saves default for this dialog

SAVE_DICOM_TAGS - Static variable in class gov.nih.mipav.view.Preferences

Dicom tags to be saved

SAVE_FILE_NAME - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the file name parameter (overrides the file_type parameter).

SAVE_FILE_TYPE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the file type (extension, generally) parameter.

save_gss(SIFT.VlSiftFilt, SIFT.VlFileMeta, String, boolean) - Method in class gov.nih.mipav.model.algorithms.SIFT

save_intermediate_images - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

save_intermediate_pyramids - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

save_mat - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

save_MRI_CED_2Dslice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

save_MRI_CED_2Dslice_test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

SAVE_PREFIX - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the file name prefix parameter.

SAVE_PROFILE - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase

Saves profile for this dialog

SAVE_SUFFIX - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the file name suffix parameter.

SAVE_VOI_INTENSITIES_TO_DIR - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities

The label to use for the VOI Intensities save destination directory parameter (leave empty for the default directory).

SAVE_VOIS_TO_DIR - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs

The label to use for the VOI-save destination directory parameter (leave empty for the default directory).

saveAllCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

saveAllVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

This method saves all VOIs for the active image to the default VOI directory for that image.

saveAllVOIs() - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves all VOIs for the active image to the default VOI directory for that image.

saveAllVOIsTo(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

This method saves all VOIs for the active image to a given directory.

saveAllVOIsTo(String) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves all VOIs for the active image to a given directory.

saveAllVOIsTo(String, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Saves all VOIs to the specified file.

saveAnnotationsAsCSV(String, String, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveAnnotationsAsCSV(String, String, VOI, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Saves the input annotations to the CSV file in the following format: name,x,y,z

saveAnnotationStatistics(String, ModelImage, ModelImage, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Saves the annotation statistics to a file.

saveAs - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

saveAs - Variable in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

saveAs3DMaskRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

radio buttons for commmiting masks as 3d or 4d if image is 4d

saveAs4DMaskRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

radio buttons for commmiting masks as 3d or 4d if image is 4d

saveAsEncapJP2 - Variable in class gov.nih.mipav.model.file.FileIO

saveAsEncapJP2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

Whether DICOM files should be saved as an encapsulated JPEG2000

saveAsGiftiXML(String, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save the TriMesh in Gifti format.

saveAsPlyFile(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

saveAsPortableVRML(PrintWriter, boolean, int[], float[], float[], Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format.

saveAsPortableVRML(PrintWriter, boolean, int, int[], float[], float[], Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format (text format).

saveAsPortableVRML(PrintWriter, ModelTriangleMesh[], boolean, int[], float[], float[], Color3f) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format (text format).

saveAsSMFAsciiFile(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sate the SMF ACII file format.

saveAsSTLAsciiFile(int, int[][], Vector3f[], ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

Sate the STIL ACII file format.

saveAsSTLAsciiFile(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sate the STIL ACII file format.

saveAsSTLBinaryFile(int, int[][], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

saveAsSTLBinaryFile(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sate the STIL Binary file format.

saveAsTextFile(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Save the triangle mesh to a text file.

saveAsTextFile(String, ModelTriangleMesh[]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Save an array of triangle meshes to a text file.

saveAsTextFile(String, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save the TriMesh as an ascii text file.

saveAsVRML(PrintWriter, boolean, int[], float[], float[], Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format.

saveAsVRML(PrintWriter, TriMesh, VertexBuffer, boolean, int[], float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves the triangle mesh in VRML97 (VRML 2.0) format.

saveAsVRML(String, boolean, int, int[], float[], float[], Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format (text format).

saveAsVRML(String, ModelTriangleMesh[], boolean, int[], float[], float[], Color3f) - Static method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh in VRML97 (VRML 2.0) format (text format).

saveAsVRML(String, TriMesh, VertexBuffer, boolean, int[], float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves the triangle mesh in VRML97 (VRML 2.0) format (text format).

saveAsVTKLegacy(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Saves the triangle mesh to VTK Legacy format

saveAsVTKLegacy(String, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save the TriMesh in VTK legacy format.

saveAsVTKXML(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

saves thr triangle mesh to VTK XML format

saveAsVTKXML(String, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save the TriMesh in VTK format.

saveAsXML(String, int[], float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Internal support for 'void save (String)' and 'void save (String, ModelTriangleMesh[])'.

saveAVI() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Saves the mouse actions as an AVI file.

saveAVI() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Saves screen graps to the animation frame and uses the animation frame to save the images to AVI format.

saveAVIMovie() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Save quick time movie.

saveAVIMovie() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Save quick time movie.

saveBandwidths(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

saveBasisVectorsAsCSV(ModelImage, String, String, VOIContour, Vector<Vector3f>, Vector<Vector3f>, Vector<Vector3f>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveBrainMesh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

If true, the surface representing the brain (mesh) is saved.

saveBrush() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint

saves the drawn paintbrush to a .png

saveButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

buttons *

saveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

saveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

saveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

DOCUMENT ME!

saveButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

buttons *

saveButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Save the current multi-histogram widgets to file.

saveBvalGradButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

saveBVector1D(Vector<Boolean>, BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Write a 1d vector to filestream.

saveBytes(File, byte[]) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.FileUtil

Saves the contents of a byte[] to the specified File.

saveCache() - Method in class gov.nih.mipav.model.algorithms.libdt.Estats

saveCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Button for selecting save to computer.

saveCheckedAppendButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

buttons for toolbar *

saveCheckedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

buttons for toolbar *

saveClodMesh(String, ClodMesh[], boolean, int[], float[], float[], TransMatrix) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save ClodMesh to disk

saveCollapseRecord(RandomAccessFile, CollapseRecord) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Support for saving the collapse records to a binary file.

saveComponents(Component, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

saveContourAsCSV(ModelImage, String, String, VOIContour) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveContours(ModelImage, Box3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveCounter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

DOCUMENT ME!

saveCropImage() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Save the cropped image.

saveCroppedImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Copies the volume data from the texture representation into the ModelImage and writes it to disk.

saveCropVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Save crop region with the clipped volume.

saveCropVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Save crop region with the clipped volume.

saved - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

saved - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder

SAVED_COEFS - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller

SAVED_COEFS - Variable in class gov.nih.mipav.model.file.libjpeg

savedbLength - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

saveDefaults() - Method in interface gov.nih.mipav.view.DialogDefaultsInterface

Method for loading dialog defaults.

saveDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Saves the defaults of profile 0.

saveDefaults(String) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Saves the defaults of the dialog base to the mipav preferences file, assigning it to the given profile name.

saveDefaultsCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

savedFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

savedFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

savedFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

savedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

savedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

savedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

savedFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

savedFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

savedFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

saveDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

DOCUMENT ME!

saveDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

saveDiameters(Vector<Float>, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

savedImageDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

savedImageDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

SavedImageName - gov.nih.mipav.view.Argument.InstanceArgument

saveDimensions() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample

DOCUMENT ME!

savedJ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec

savedStartPoint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

The different searches change the number of variables in the transformation matrix that change.

saveDVector1D(Vector<Double>, BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Write a 1d vector to filestream.

saveDVector2D(Vector<Vector<Double>>, BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Write a 2d vector to filestream.

saveEnhancedDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

Whether 3D or higher dimensionality dicom images should be saved as a single file

saveExit - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

saveFeatureSpaceValue(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

saveFeatureSpaceValue(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

saveFeatureSpaceValue(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

saveFeatureSpaceValue(ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Save CE features to user specified directory.

saveFieldDefaults() - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Saves the last-entered bug report field text for loading the next time the dialog is used.

saveFile() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

saveFileActionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

Handles the action event generated by the "Save label file" dialog.

saveFileActionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

saveFileFormat - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

saveFileSize - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

saveGradchooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

chooser for save gradBval text dialog

saveGraphButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

saveGroundTruth() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

saveGroundTruth() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

saveGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Restores the current VOI after QuickLUT.

saveGVF - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

saveGVF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

saveGVFCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

saveHED2DsliceCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

saveHED2DsliceMRI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImage(float[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

saveImage(float[], int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

saveImage(ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelImage

saveImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Ask the user for a name to save an image as and then write it out to disk.

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveImage(ModelImage, ModelImage, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

saveImage(ModelImage, ModelImage, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

Save 3D image into 2D slice png files.

saveImage(ModelImage, ModelImage, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImage(ModelImage, ModelImage, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

saveImage(ModelImage, ModelImage, String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveImage(ModelImage, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

saveImage(ModelImage, String, ModelImage, String, String, String, String, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

saveImage(ModelImage, String, ModelImage, String, String, String, String, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

saveImage(ModelImage, String, String) - Static method in class gov.nih.mipav.model.structures.ModelImage

Save the gradient magnitude image into the MIPAV default dir.

saveImage(ModelImage, String, String, boolean) - Static method in class gov.nih.mipav.model.structures.ModelImage

saveImage(Image, File) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver

Saves Image using ContourPlot.ImageSaver.saveImage(Image, File, String).

saveImage(Image, File, String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver

Saves image using ContourPlot.ImageSaver.saveImage(Image, OutputStream, String).

saveImage(Image, OutputStream, String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver

Saves specified Image to file of specified img file format.

saveImage(Image, String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver

Saves Image using ContourPlot.ImageSaver.saveImage(Image, File).

saveImage(Image, String, String) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver

Saves image using ContourPlot.ImageSaver.saveImage(Image, File, String).

saveImage(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Save the dicom matrix header info.

saveImage(String, ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveImage(String, String, int, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage

Save the image to a file.

saveImage(String, String, int, boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage

Save the image to a file.

saveImage(String, String, int, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage

Save the image to a file.

saveImage(FloatBuffer) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

saveImage(FloatBuffer, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

SaveImage(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Saved features directory.

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

saveImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

saveImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

saveImageDirectory_test - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveImageDirectory_test - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImageDirectory_train - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveImageDirectory_train - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImageFFT(FloatBuffer) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

saveImageFFT(FloatBuffer, int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

saveImageFile(ModelImage, String, String, int) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

saveImageFile(ModelImage, String, String, int, boolean) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

saveImageInfo() - Method in class gov.nih.mipav.view.ViewJFrameImage

Saves the image info; need to do before saving image.

saveImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Save the 2D slices and VOIs to user specified dir.

saveImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveImages(int, int[], String, Hashtable<Integer, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

saveImages(int, int[], String, Hashtable<Integer, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveImages(ModelImage, int[], String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

saveImages(ModelImage, int[], String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

saveImages(ModelImage, int[], String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

saveImages(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

saveImages(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveImages(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

saveImages(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveImages_ext(int, int[], String, Hashtable<Integer, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

saveImages_ext(int, int[], String, Hashtable<Integer, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

saveImages_ext(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

saveImages_ext(String, int[], String, Hashtable<String, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

saveImagesCED(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveImageSlice_test(ModelImage, String, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveImageSlice_test(ModelImage, String, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

saveImagesTest() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

saveImagesTest(int, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

saveImagesTest(int, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveImagesTest(int, int[], String, Hashtable<Integer, ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

saveImagesTest(ModelImage, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

saveImagesTest(ModelImage, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

saveImagesTest(String, int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

Save the 2D slices and VOIs to user specified dir.

saveImagesTrain() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

Save the 2D slices and VOIs to user specified dir.

saveImageToFile(DICOM_Comms.ByteBuffer, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Saves the DDO to the file name supplied as a method parameter.

saveInSubdirectory - Variable in class gov.nih.mipav.model.file.FileWriteOptions

To save the image file in a subdirectory of image-name (without extension) when true.

saveIntegratedMarkerAnnotations(String, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

saveIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

saveIntermResults - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

saveLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

Label before comboBoxSaveMethod

saveLabels(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

saveLabels(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

DOCUMENT ME!

saveLabelsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

save labels button.

saveLattice() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Enables the user to save the lattice to a user-selected file.

saveLattice(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

saveLattice(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Saves the lattice to the specified file and directory.

saveLattice(String, String, VOIVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveLattice(String, String, String, VOIVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveLatticeStatistics() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveLatticeStatistics(String, float, VOI, VOI, float[], float[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Saves the lattice statistics to a file.

saveLIST2Size - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

saveListB() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

Method to save the items in List B.

saveListB() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

Method to save the items in List B.

saveLoadPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

saveLoadPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

saveLUT(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves the LUT for the active image.

saveLUTandTransferFunction(boolean, String, String) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This method saves the LUT for the active image.

saveLUTandTransferFunction(ModelImage, ModelLUT, String, String) - Static method in class gov.nih.mipav.view.ViewJFrameBase

Saves the ModelLUT and transfer function.

saveLUTandTransferFunction(String, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

This method saves the LUT for the active image.

saveLUTandTransferFunction(String, String) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves the LUT for the active image.

saveLUTAs(boolean, String, String) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This method saves the LUT for the active image.

saveLUTAs(boolean, String, String) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

This method saves the LUT for the active image.

saveLUTAs(boolean, String, String) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves the LUT for the active image.

saveLUTAs(ModelImage, ModelStorageBase, boolean) - Static method in class gov.nih.mipav.view.ViewJFrameBase

Saves the LUT associated with the input image (either a ModelLUT or ModelRGB).

saveMaskButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

save mask button.

saveMasksAs4D - Variable in class gov.nih.mipav.view.dialogs.JDialogMask3D4D

saveMasksAs4D - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

this boolean is needed for commiting masks for a 4d image

saveMatrix(RandomAccessFile) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format.

saveMatrix(RandomAccessFile) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Saves transformation matrix to a text file MIPAV format

saveMatrix(RandomAccessFile, int, float, float, float, float, float, float, int, int, int, int, int, int, boolean, boolean, boolean, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format.

saveMatrix(RandomAccessFile, int, float, float, float, int, int, int, boolean, boolean, boolean, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format

saveMatrix(RandomAccessFile, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format.

saveMatrix(RandomAccessFile, String) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Saves transformation matrix to a text file MIPAV format

saveMatrix(String) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format

saveMatrix(String) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Saves transformation matrix to a text file MIPAV format

saveMatrix(String, int, float, float, float, float, float, float, int, int, int, int, int, int, boolean, boolean, boolean, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

saveMatrix(String, int, float, float, float, int, int, int, boolean, boolean, boolean, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

saveMatrix(String, String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

Saves: 1.)

saveMatrix(String, String) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to a text file MIPAV format

saveMatrix(String, String) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Saves transformation matrix to a text file MIPAV format

saveMergedVOIs() - Method in class gov.nih.mipav.view.ViewJFrameImage

This method merges the 3 axial, sagittal, coronal VOIs and save them into one cloudy points file.

saveMesh(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Internal support to write vertices, normals, and connectivity indices to the file.

saveMesh(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Internal support to write vertices, normals, and connectivity indices to the file.

saveMesh(Vector<Vector3f>, int[], boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes

saveMeshContoursCSV() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveModel(File, Model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

Writes the model to the file with ISO-8859-1 charset.

saveModel(Writer, Model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

Writes the model to the modelOutput.

saveModes(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

saveMosaic() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

saveMosaic -- Opens a save dialog and saves the mosaic image in the selected file format.

savemovi - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

saveMovie() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Save the movie into both AVI and QuickTime files.

saveMRI2Dslice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveMRI2Dslice_test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

saveMultiHistograms(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

saveMultiMesh(ModelImage, SurfaceAttributes[]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Writes multiple surfaces to one file.

savename - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

saveNeuriteCurves() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

saveNeuriteCurves() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveNewFunction(float[][], float[][], int) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Replaces the first three functions (used with RGB images).

saveNewFunction(float[], float[], int) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Saves the current function and adds a blank new function.

saveNiiImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

saveOrthogonalCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

saveOrthogonalCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

To save memory, save intermediated axial, sagittal, coronal original MRI image, generated CED image and the gruond truth label to MIPAV readable .xml image format.

saveOrthogonalCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

saveOrthogonalCEDImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

savePaint() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

savePaintAs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

This method allows the user to choose how to save the paint bitmap.

saveParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Save camera and object viewing parameters.

saveParams() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

save heuristic parameters

saveParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

save heuristic parameters

savepath - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

savePLYSurfaceButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Save .PLY surface button.

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

savePNGfile(String, String, ModelImage, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

savePNGfile(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

savePNGfile_test(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

savePNGfile_test(String, String, ModelImage, float, float, int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

savePolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

savePortableMesh(ModelImage, ModelTriangleMesh[], PrintWriter, Color3f) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Saves a single level of detail to a mesh file.

savePositions(VOIContour, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveppftfilter(int, double[][][][], String) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

savePreferences() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Saves the global graph properties (background color, text sizes) to the default mipav graph preferences file in the Preferences.getPreferencesDir directory.

savePreferences() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

Saves the global graph properties (background color, text sizes) to the default mipav graph preferences file in the Preferences.getPreferencesDir directory.

saveProfile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

Saves off a profile into the preferences.

saveProfile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

Saves off a profile into the preferences.

savePromptOverwriteBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

saveProstateBoundaryFeature() - Method in class gov.nih.mipav.view.ViewJFrameImage

saveProstateFeatures() - Method in class gov.nih.mipav.view.ViewJFrameImage

saveProstateFeatures2D() - Method in class gov.nih.mipav.view.ViewJFrameImage

saveProstatePlyMesh(String, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a STL mesh file.

saveProstateSTLMesh(String, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a STL ascii mesh file.

saveProstateSurface(String, TriMesh, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Save a TriMesh to disk

saveProstateSurfaces(int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Save the selected surfaces.

savePrunedModes(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

saveQuickTimeMovie() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Save AVI movie.

saveQuickTimeMovie() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Save AVI movie.

saver - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

DOCUMENT ME!

saver - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

sAveraging() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging

Averages image slices together.

sAverAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

DOCUMENT ME!

saveSamplePlanes(VOI, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveSeamAnnotations(String, VOI, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

saveShortcuts() - Static method in class gov.nih.mipav.view.Preferences

Sets the property for shortcuts by building string from ViewUserInterface's Shortcut Hashtable.

saveShortcuts() - Method in class gov.nih.mipav.view.ViewFileChooserBase

Saves the shortcuts list to a file in user's home directory.

saveSingleMesh(ModelImage, boolean, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a mesh file.

saveSingleMesh(ModelImage, ModelTriangleMesh[], boolean, Color4f, SurfaceAttributes) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Saves a single level of detail to a mesh file.

saveSingleMesh(String, ModelImage, boolean, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a mesh file.

saveSingleMesh(String, ModelImage, ModelTriangleMesh[], boolean, Color4f, Color4f[][]) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Saves a single level of detail to a mesh file.

saveSinglePlyMesh(String, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a STL mesh file.

saveSingleSTLMesh(String, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Saves a single level of detail to a STL mesh file.

saveSpline(String, VOI, Vector3f, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveStartEnd() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

In livewire mode the endpoints of each path segment along Dijkstra's curve -- between each of the user-selected points -- are stored so that the smoothed geodesic may be calculated and displayed later.

saveStartEnd() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

In livewire mode the endpoints of each path segment along Dijkstra's curve -- between each of the user-selected points -- are stored so that the smoothed geodesic may be calculated and displayed later.

SaveState() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

saveSTLSurfaceButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Save .STL surface button.

SaveStrings(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

SaveStrings(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect

SaveStrings(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Write this object into a StringTree for the scene-graph visualization.

saveSubsampleDimensions(Dimension) - Static method in class gov.nih.mipav.view.Preferences

Used by ViewOpenImageSequence to save its subsample dimensions for the next time it is opened.

saveSur(String, TriMesh, int, VertexBuffer, boolean, int[], float[], float[], TransMatrix) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Write the TriMesh to disk in the .sur format.

saveSurfaceButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Save surface button.

saveSurfaces(int[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Save the selected surfaces.

saveSurfaces(ModelImage, SurfaceAttributes[], String) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

The action taken when the one of the save surface buttons is pressed in the JPanelSurface class.

saveSurfaces(ModelImage, TriMesh[], String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

The action taken when the one of the save surface buttons is pressed in the JPanelSurface class.

SaveTabs(VolumeRenderState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

saveTags() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Save tags to a file in ASCII format.

saveTensor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

saveTestedImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

saveThumbnailCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

saveToFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

saveToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

saveToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

saveToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

saveToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression

saveToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

saveTransformMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.ModelImage

Saves the transformation matrix to file.

saveTransformMatrix(String, TransMatrix) - Method in class gov.nih.mipav.model.structures.ModelImage

Save the images transformation matrix in the working directory with the supplied fileName.

saveTransformMatrix(String, TransMatrix[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

This method creates the Trans Matrices Array file for DTI Preprocessing

saveTriMesh(ModelImage, String, String, String, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

saveUDLUT() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Save user defined LUT table.

saveValue - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Used with commitMask(int imagesDone), to save the value.

saveValueB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

saveValueG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

saveValueR - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

saveVector1D(Vector<Integer>, BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Write a 1d vector to filestream.

saveVector2D(Vector<Vector<Integer>>, BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Write a 2d vector to filestream.

saveVisualizationButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Save button for the opacity tranform function.

saveVisualizationDataAs(boolean, String, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

This method saves the LUT and opacity function for the active image.

saveVOI(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

This method saves a selected VOI

saveVOI(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method saves a selected VOI - should this be in VOI structure ??!!!

saveVOI(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

saveVOIAs() - Method in class gov.nih.mipav.view.ViewJFrameBase

DOCUMENT ME!

saveVOIAs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

This method allows the user to choose how to save the VOI.

saveVOIAs(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

This method allows the user to choose how to save the VOI.

saveVOIIntensities() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.

saveVOIIntensities() - Method in class gov.nih.mipav.view.ViewJFrameBase

Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.

saveVOIIntensitiesTo(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.

saveVOIIntensitiesTo(String) - Method in class gov.nih.mipav.view.ViewJFrameBase

Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.

saveVOILPSButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

saveVOIs(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Save the current VOIState to the undo/re-do list.

saveVOIVoxelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

saveVolume(String, int, short[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D

Write the specified volume to the file of the specified name.

saveX - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Used with commitMask(int imagesDone), to save positions.

saveXFMMatrix(RandomAccessFile) - Method in class gov.nih.mipav.model.structures.TransMatrix

Saves transformation matrix to McGill XFM format

saveXFMMatrix(RandomAccessFile) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Saves transformation matrix to McGill XFM format

saveXMLHeader(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

saveY - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Used with commitMask(int imagesDone), to save positions.

saveZ - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Used with commitMask(int imagesDone), to save positions.

savgol(double[][], double[][], int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

savgolButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

savingAsEncJP2 - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice

saw_Adobe_marker - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

saw_JFIF_marker - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

saw_SOF - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader

saw_SOI - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader

SB - Variable in class gov.nih.mipav.model.algorithms.WishartVariateGenerator

sb_tree() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.sb_tree

sBIT - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

sBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Buffer for sampled image.

sBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess

Buffer that stores the s value in calcInPlace2DBuffer that contributed to resultBuffer.

sBuffer - Variable in class gov.nih.mipav.model.file.FileTMG

DOCUMENT ME!

SButton - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

SBYTE - gov.nih.mipav.model.file.FileSVS.Type

8 bit signed

SBYTE - gov.nih.mipav.model.file.FileTiff.Type

8 bit signed

SBYTE - Static variable in class gov.nih.mipav.model.file.FileLSM

2nd denom.

SBYTE - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

sc_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SC_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

scad - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

SCAD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

SCAD - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

scaddvtx(double[][], double[], double[][], double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scalarImage - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

ScalarMatrixToBlockMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

scalarNames - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Scalar names and property names

ScalarVector(Vector3f, double, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.erfcModel2

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

scale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

scale - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

scale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureLaplacianScale

scale - Variable in class gov.nih.mipav.model.algorithms.NESolve

scale - Variable in class gov.nih.mipav.model.algorithms.NMSimplex

scale - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite

scale - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF

scale - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel

scale - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel

scale - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel

scale - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel

scale - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel

scale - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

Reference: Statistical Distributions Fourth Edition, Catherine Forbes, Merran Evans, Nicholas Hastings, and Brian Peacock, Chqapter 46, Weibull Distribution, pp. 193-201.

scale - Variable in class gov.nih.mipav.model.file.FileAvi

scale - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

scale - Variable in class gov.nih.mipav.model.file.FileInfoSPM

a floating point scale factor used during memory mapping.

scale - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

scale - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

scale - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

scale - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

scale - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

scale - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect

scale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

scale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

scale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial

scale(float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix

Scale the matrix along the diagonal.

scale(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f

sets this instance to the scalar product with itself.

scale(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

scale(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI

Scales image.

scale(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

scale(VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Scale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Scale the shape

Scale(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection

Wrapper to scale all shape

Scale(double, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Scales the shape.

Scale(double, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection

Scale the shapes.

Scale(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

Scale(float, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceClipEffect

Scale the surface to fit the mask texture.

Scale(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

Scale(Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

SCALE - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SCALE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun

SCALE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test

scale_A - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_component(FileJPEG2000.opj_image_comp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000

scale_component_up(FileJPEG2000.opj_image_comp_t, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000

scale_denom - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

scale_exit_with_help() - Method in class gov.nih.mipav.model.algorithms.LIBSVM

scale_I - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_L - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_M - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_num - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

scale_P - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_R - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale_ratio_i - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

scale_ratio_k - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

scale_S - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

scale1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

scale1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

scale1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

scale1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

bin1 is generated from Math.round(scale1*(buffer[i]-min1)) and bin2 is generated from Math.round(scale2*(secondBuffer[i]-min2)).

scale1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

bin1 is generated from Math.round(scale1*(buffer[i]-min1)) and bin2 is generated from Math.round(scale2*(secondBuffer[i]-min2)).

scale2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

scale2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

scale2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

scale2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

scale2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

scale2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

bin1 is generated from Math.round(scale1*(buffer[i]-min1)) and bin2 is generated from Math.round(scale2*(secondBuffer[i]-min2)).

scale2 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

bin1 is generated from Math.round(scale1*(buffer[i]-min1)) and bin2 is generated from Math.round(scale2*(secondBuffer[i]-min2)).

scale2frequency(PyWavelets.ContinuousWavelet, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

scale2frequency(PyWavelets.DiscreteWavelet, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SCALEBITS - Static variable in class gov.nih.mipav.model.file.libjpeg

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

scaleCedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleCedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

scaleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

scaleCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

scaleCircle(Vector2f, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Scale the circle based on the current center and the difference between the current center and the mouse position.

ScaleCircle(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

scale the circle based on the mouse position.

scaleCircleVOI(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

scaleColorAlpha(int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations

Scales the alpha value of a specified integer packed ARGB color by a specified scaling factor m.

scaleColorAlpha(int, float) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

ScaleColumns(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

ScaleColumns(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

ScaleColumns(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

ScaleColumns(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

ScaleColumns(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

ScaleColumns(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

scaled_direction_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction

SCALED_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Bessel

multiplied by exp(-abs(Real(z))).

SCALED_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.BesselEP

multiplied by exp(-abs(Real(z))).

ScaledLoss(CeresSolver.LossFunction, double, CeresSolver.Ownership) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss

scaleDown(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

scaleDown(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

scaleDown(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

scaleDown(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

scaleDown(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

ScaledTextureEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

ScaledTextureEffect(String, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.ScaledTextureEffect

Creates a new TextureEffect with the texture specified.

ScaledUp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

scaleFactor - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

scaleHeight - Variable in class gov.nih.mipav.model.file.FileInfoZVI

scaleImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

scaleImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

scaleImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleImageTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

scaleIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

scaleIndex - Variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

scaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

scaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

scaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

scaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

scaleIntensity() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

Scale the image intensity between 0 and 1000

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

Normalize the image intensity between 25% and 75% intensity range value, then scale by a factor of 1000.

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

scaleIntensity(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

scaleIntensityTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleIntensityTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleInvariant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

scaleInvariant - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

scaleKernel - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

OpenCL scale kernel, multiplies the image by buffer1[0] / buffer2[0], where all buffers are OpenCL buffers on the GPU / CPU.

scaleList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

scaleMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE

scaleMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

scaleMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

scaleMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter

scaleMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

scaleMax - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

scaleMax - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

scaleMaxCIELab - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

scaleMaxValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

DOCUMENT ME!

scaleMesh(float, HashSet[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

scaleMesh(TriMesh) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

Scales the input mesh based on the offset parameter set in the constructor.

scaleOnImage - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

DOCUMENT ME!

scaleOnLocal - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

DOCUMENT ME!

scaleOnSlice - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

DOCUMENT ME!

scalePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

scalePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

DOCUMENT ME!

scalePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

scalePoint(double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

Scale the point by scale parameter and store it into another vector.

scalePoint(double[], double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Scale the point by scale parameter and store it into another vector.

scalePoint(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

Obtain the transformation vector and make a copy, then scale it by scale parameter.

scalePoint(int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Obtain the transformation vector and make a copy, then scale it by scale parameter.

scalePolygon(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

scaler - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

scaler - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

scaleRange - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

scaleRange - Variable in class gov.nih.mipav.view.JPanelHistogram

scaleRangeA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Scale range value according to the image min and max.

scaleRangeA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Scale range value according to the image min and max.

scaleRangeA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Scale range value according to the image min and max.

scaleRangeA - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Scale range value according to the image min and max.

scaleRangeB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Scale range value according to the image min and max.

scaleRangeB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Scale range value according to the image min and max.

scaleRangeB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Scale range value according to the image min and max.

scaleRangeB - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Scale range value according to the image min and max.

scaleRangeGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Scale range value according to the image min and max.

scaleRangeGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Scale range value according to the image min and max.

scaleRangeGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Scale range value according to the image min and max.

scaleRangeGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Scale range value according to the image min and max.

ScaleRectangle(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

Scale the rectangle, based on the control points

scaleRows(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

scales - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

scales - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet

ScaleShape2Final(int, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq

Scale a shape defined in 'model' coordinates to 'FinalModel' coordinates.

ScaleShape2Model(int, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq

Scale a shape defined in 'FinalModel' coordinates to 'model' coordinates .

scaleSlope - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

scaleSlope - Variable in class gov.nih.mipav.model.file.FilePARREC

scaleSquareVOI(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

scaleStepsBF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

scaleStepsText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Brute-force registration parameters:.

scaleText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate

DOCUMENT ME!

scaleToCube() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh

uniformly scale points to [-1,1]^3, originally in [min,max]^3 returns 2D vector with (min,max) as the elements public Vector2f scaleToCube ().

ScaleTriangle(int, int, int, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

Resizes the triangle using the lower-control point:

ScaleUp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

scaleVariablesToUnitVariance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

scaleVariablesToUnitVariance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

scaleVariablesToUnitVariance - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

scaleVariablesToUnitVariance - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

scaleVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Creates the scene graph for displaying the VOIBase object.

scaleVOI(VOIBase, MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

scaleVoiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

scaleVoiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

scaleWidth - Variable in class gov.nih.mipav.model.file.FileInfoZVI

scaleX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

scaleX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection

x and y standard deviations of Gaussians used to convolve normalized forces.

scaleX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

scaleX - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

scaleY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

scaleY - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

scaleZ - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

scaling - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

SCALING_WITH_SCALE - Variable in class gov.nih.mipav.model.algorithms.NESolve

SCALING_WITHOUT_SCALE - Variable in class gov.nih.mipav.model.algorithms.NESolve

scalingFactor1 - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scalingFactor1 - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

scalingFactor1Index - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scalingFactor2 - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scalingFactor2 - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

scalingFactor2Index - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scalingFactor3 - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

scalingFactor4 - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

scalingFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

scalingOption - Variable in class gov.nih.mipav.model.algorithms.Bessel

UNSCALED_FUNCTION returns cy[j-1] = besselFunction(initialOrder+j-1,z), j = 1,...

scalingOption - Variable in class gov.nih.mipav.model.algorithms.BesselEP

UNSCALED_FUNCTION returns cy[j-1] = besselFunction(initialOrder+j-1,z), j = 1,...

scalingWH(Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

scalv(double[], double, int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

scalv(DoubleDouble[], DoubleDouble, int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

scanAcqNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

728 Scan Acquisition Number.

scanAcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scanAcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scanARRs - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scanARRs - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scanAttributesStr - Static variable in class gov.nih.mipav.model.file.FileImageXML

array of strings representing the tags under in the xml schema.

scanDate - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

scanEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

scangle(double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scanID - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

scanins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

scanins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

ScanlineParts() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Direct access to the scanline parts (not commonly used)

scanMatrixX - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scanMatrixX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scanMatrixY - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scanMatrixY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scanModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

model associated with scan information.

SCANNER_XYZ - Static variable in class gov.nih.mipav.model.file.FileNRRD

A scanner-based right-handed coordinate frame, used in ACR/NEMA 2.0.

SCANNER_XYZ_TIME - Static variable in class gov.nih.mipav.model.file.FileNRRD

Like SCANNER_XYZ, but with time along the fourth axis.

ScannerChoiceListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener

scannerCombo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree

scannerLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Labels for the current scanner position:.

scannerLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Labels for the current scanner position values:.

scannerLPS_APLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner lps goto components*

scannerLPS_APTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerLPS_GoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerLPS_GoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerLPS_ISLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner lps goto components*

scannerLPS_ISTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerLPS_RLLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner lps goto components*

scannerLPS_RLTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerLPSGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Method that goes to the lps coordinate that is entered

scannerLPSLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

Labels for the current scanner position:.

scannerLPSLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase

Labels for the current scanner position values:.

scannerLPSPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase

JPanel containing the scanner position labels:.

scannerPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

JPanel containing the scanner position labels:.

scannerQuantificationFactor - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scannerRAS_APLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner ras goto components*

scannerRAS_APTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerRAS_GoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerRAS_GoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerRAS_ISLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner ras goto components*

scannerRAS_ISTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerRAS_RLLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

scanner ras goto components*

scannerRAS_RLTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

scannerRASGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Method that goes to the ras coordinate that is entered

scannerRASLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

Labels for the current scanner position:.

scannerRASLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase

Labels for the current scanner position values:.

scannerRASPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase

JPanel containing the scanner position labels:.

scannerTabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameBase

The tabbed pane to hold teh LPS, RAS and absolution coordinate panels.

scannerToFile(Vector3f, Vector3f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems

Translates the input point into FileCoordinates, based on the input image, kImage.

scannerToFile(Vector3f, Vector3f, Vector3f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems

Translates the input point into FileCoordinates, based on the input image, kImage.

scannerType - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

ScannerType() - Constructor for enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType

scanningSequence - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

scanningSequence - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

scanningSequence - Variable in class gov.nih.mipav.model.file.FilePARREC

scanningSequenceIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

scanningSequencePos - Variable in class gov.nih.mipav.model.file.FilePARREC

scannum - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Scan ID Length of 10.

scannum - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Scan ID Length of 10.

scannum - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

scanOptions - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

scanPercentage - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

scanPercentage - Variable in class gov.nih.mipav.model.file.FilePARREC

scanPercentageIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

scanPercentagePos - Variable in class gov.nih.mipav.model.file.FilePARREC

scanPos - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

scanProtocolName - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scanProtocolName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scanProtocolName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

92 - 25 bytes - Scan Protocol Name.

ScanSortDir(String, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Scans and sorts a directory for files with a specific extension.

scanSpacing - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

116 Spacing between scans (mm?).

scanTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

scan infomation table.

scanTime - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

scanTime - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

scanType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

74 - Scout or Axial (for CT).

scanType - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

scanTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

scatterCorrected - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scatterCorrectionMethod - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

scaunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

scaunc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

scc() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

sccheck(String, double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

DOCUMENT ME!

sceneCaptureType - Variable in class gov.nih.mipav.model.file.FileSVS

sceneCaptureType - Variable in class gov.nih.mipav.model.file.FileTiff

sceneRootTG - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

A TransformGroup object to which all the scene objects are attached, including 3D images, surface, behavior, and lights.

SceneState - Class in gov.nih.mipav.view.renderer

Collectiing the current virtualization toolbox values for both volume and slices render dialogs.

SceneState(int, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

Creates a new SceneState object.

SceneState(int, int, int, int, int, int, boolean, boolean, boolean, int, int, int, int, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int, TransferFunction, boolean, boolean, boolean, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.view.renderer.SceneState

Construct the SceneState object associate with the current visualization toobox values.

SceneStatePlotter - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview

DOCUMENT ME!

SceneStatePlotter(int, boolean) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

Creates a new SceneStatePlotter object.

sceneType - Variable in class gov.nih.mipav.model.file.FileSVS

sceneType - Variable in class gov.nih.mipav.model.file.FileTiff

sCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X

sCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sCentroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

sCentroids - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

scfix(double[][], double[], int[], int[], String, double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SCformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.SCformat

schdc(int, int[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

schdc(int, int[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

sched - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams

scheduler - Variable in class gov.nih.mipav.view.ViewUserInterface.MemoryUsageUpdater

scheduleRepaint() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback

scheduleRepaint() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas

Schedules a repaint call on the AWT event dispatch thread.

scheme - Variable in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme

schur_complement_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver

SCHUR_JACOBI - gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType

schur_structure_given - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

schur_structure_used - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

SchurComplementSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver

SchurEliminator(int, int, int, CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator

SchurEliminatorBase() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase

SchurEliminatorTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SchurEliminatorTestScalarProblemNoRegularization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SchurEliminatorTestScalarProblemNoRegularization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurEliminatorTestScalarProblemWithRegularization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SchurEliminatorTestScalarProblemWithRegularization() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurEliminatorTestVaryingFBlockSizeWithoutStaticStructure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SchurEliminatorTestVaryingFBlockSizeWithoutStaticStructure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurEliminatorTestVaryingFBlockSizeWithStaticStructure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SchurEliminatorTestVaryingFBlockSizeWithStaticStructure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurJacobiPreconditioner(CeresSolver.CompressedRowBlockStructure, CeresSolver.PreconditionerOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner

SchurOrderingTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

SchurOrderingTestAllFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

SchurOrderingTestAllFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurOrderingTestNoFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

SchurOrderingTestNoFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurOrderingTestOneFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

SchurOrderingTestOneFixed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SchurStructureToString(int, int, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

SchwarzChristoffelMapping - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping() - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SchwarzChristoffelMapping(ModelImage, ModelImage, double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SchwarzChristoffelMapping(ModelImage, ModelImage, double[], double[], int[], int) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SchwarzChristoffelMapping(ModelImage, ModelImage, double[], double[], int, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SchwarzChristoffelMapping.crpfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.depfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.dpfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.indexValueComparator - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.indexValueItem - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.ODEExtModel - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.ODEModel - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.ODERectModel - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.polygon - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.qlgraph - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.rpfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping.scmap - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2 - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2() - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

SchwarzChristoffelMapping2(ModelImage, ModelImage, double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

SchwarzChristoffelMapping2.hppfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.ODEHPModel - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.ODESTModel - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.stpfun - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.stpfun2 - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.stpfun3 - Class in gov.nih.mipav.model.algorithms

SchwarzChristoffelMapping2.stpfunEP - Class in gov.nih.mipav.model.algorithms

SCI_NOT_EXPONENT_CHAR - Static variable in class gov.nih.mipav.util.DoubleDouble

SCI_NOT_ZERO - Static variable in class gov.nih.mipav.util.DoubleDouble

scic - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

554 Surface Coil Intensity Correction Flag.

scilType - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

scilType - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

scIma - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scIma - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scimapz0(double[][], double[][], String, double[][], double[][], double[], double[][], double[], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scl_inter - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

scl_inter - Variable in class gov.nih.mipav.model.file.FileNIFTI

scl_slope - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

If the scl_slope field is nonzero, then each voxel value in the dataset should be scaled as y = scl_slope * x + scl_inter where x = voxel value stored y = "true" voxel value Normally, we would expect this scaling to be used to store "true" floating values in a smaller integer datatype, but that is not required.

scl_slope - Variable in class gov.nih.mipav.model.file.FileNIFTI

If the scl_slope field is nonzero, then each voxel value in the dataset should be scaled as y = scl_slope * x + scl_inter where x = voxel value stored y = "true" voxel value Normally, we would expect this scaling to be used to store "true" floating values in a smaller integer datatype, but that is not required.

sclAdd(float, Vector3f, float, Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni

scale and add two vectors.

sclAdd(float, Vector3f, float, Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Scale and add two vectors.

scm - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

scm - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

scmap() - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap

scomp(delaunay.Point, delaunay.Point) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

ScopedExecutionTimer(String, CeresSolver.ExecutionSummary) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ScopedExecutionTimer

score - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureLaplacianScale

score - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation

score - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map.curvePair

score - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale.curvePair

score(double[], double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson

scores - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer

scores - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm

< Statistcs.

scoresVariation - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics

< Duality gap = objective - dualObjective.

scoutType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

122 Scout Type (AP or lateral).

scpadapt(Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Boolean>, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scpadapt2(Vector<Double>, Vector<Double>, Vector<Double>[], Vector<Double>[], Vector<Boolean>, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SCPformat() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat

SCPRole - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect

Indicates the Serivce Class Provider (SCP) (i.e.

SCPSCURoleVector - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation

public DICOM_SCPSCURoleSelect SCPSCURole = null; //new DICOM_SCPSCURoleSelect();.

scqdata(double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

SCRAMB(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

scratch - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction

scratch - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction

scratch - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.RestrictedLaplacianMatrixFunction

scratch_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblem

scratch_evaluate_preparer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer

scratch0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction

scratch1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction

scratch2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.DivergenceFunction

ScratchEvaluatePreparer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ScratchEvaluatePreparer

Screen(Integer, String, String) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Screen

Creates a new Screen object.

screenCap - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Button to launch the create new image dialog

screenCapture - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Dialog used for taking screen captures

ScreenCoordinateListener - Interface in gov.nih.mipav.view.renderer.WildMagic.VOI

ScreenCoordinateListener This interface defines functions that convert mouse coordinates to image file coordinates.

screenFormat - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

112 - (8ቬ) bits.

screenHeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Screen width, screen height.

screenHeight - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Screen width, screen height.

screenHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Current frame width and height.

screenID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate.ScreenRef

screenID - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Screen

Attributes.

ScreenRef(Integer, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Plate.ScreenRef

Creates a new ScreenRef object.

screenRefs - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate

Elements.

screens - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME

DOCUMENT ME!

screenShotRotateCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

screenShots - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

screenToFile(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFile(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

screenToFile(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

screenToFile(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFile(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

screenToFile(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFile(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

screenToFile(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

screenToFileVOI(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFileVOI(int, int, int, Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Converts local screen coordinates, usually from a MouseEvent, into image file coordinates.

screenToFileVOI(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

screenToFileVOI(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFileVOI(Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Converts local screen coordinates, usually from a MouseEvent, into image file coordinates.

screenToFileVOI(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

screenToFileVOI(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

screenToFileVOI(Vector3f, Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Converts local screen coordinates, usually from a MouseEvent, into image file coordinates.

screenToFileVOI(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

ScreenToLocal(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Calculate the position of the mouse in the Local Coordinates, taking into account zoom and translate:

ScreenToLocal(int, int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Calculate the position of the mouse in the Local Coordinates, taking into account zoom and translate:

ScreenToLocal(int, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Calculate the position of the mouse in the Local Coordinates, taking into account zoom and translate:

ScreenToLocal(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentBase

ScreenToLocal converts a point from screen coordinates to local coordinates.

ScreenToModel(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Translate from normalized plane coordinates to Model coordinates:

ScreenToModel(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Translate from normalized plane coordinates to Model coordinates:

screenWidth - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Screen width, screen height.

screenWidth - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Screen width, screen height.

screenWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Current frame width and height.

script - Variable in class gov.nih.mipav.model.scripting.ScriptRecorder

The contents of the current script being recorded.

Script - gov.nih.mipav.view.Argument.InstanceArgument

SCRIPT - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

Script Files (*.sct).

SCRIPT_ACTION_LOCATIONS - Static variable in class gov.nih.mipav.model.scripting.ScriptableActionLoader

Try MIPAV dialogs, then special script actions, then plugins (which are in the default package).

ScriptableActionInterface - Interface in gov.nih.mipav.model.scripting

An interface for classes which want to allow themselves to be scripted.

ScriptableActionLoader - Class in gov.nih.mipav.model.scripting

Given the name of a script action, this class searches a number of locations for a class to load with that name and returns a new instance of that class.

ScriptableActionLoader() - Constructor for class gov.nih.mipav.model.scripting.ScriptableActionLoader

scriptFail - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

boolean telling if script failed

scriptFile - Variable in class gov.nih.mipav.model.scripting.ParserEngine

The path to the script file to be parsed ('-' if the script is already in memory and has no related file).

scriptFile - Variable in class gov.nih.mipav.model.scripting.ScriptRunner

The path to the script we want to execute.

scriptFile - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

scriptIcon - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer

DOCUMENT ME!

ScriptImage - Class in gov.nih.mipav.view.dialogs

ScriptImage(ModelImage) - Constructor for class gov.nih.mipav.view.dialogs.ScriptImage

ScriptImage(String, String, boolean) - Constructor for class gov.nih.mipav.view.dialogs.ScriptImage

scriptImageActions - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

scriptImageLabels - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

scriptImageVars - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

scriptLineRegex - Static variable in class gov.nih.mipav.model.scripting.ParserEngine

This regular expression pattern breaks apart a line in a script into two groups: the script action and the string containing all the action's parameters.

SCRIPTNODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

Script node type (Script)... only one and is only child of root

scriptNodeChildCount - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

child count for script node

scriptParameters - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Contains parameters used to run or record the dialog action, along with some common helper methods.

scriptRange - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

When running as a script, holds the pixel exclusion range.

scriptRange - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

When running as a script, holds the pixel exclusion range.

scriptReader - Variable in class gov.nih.mipav.model.scripting.ParserEngine

The reader used to read in each line of the script.

scriptRecorder - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

A reference to the global MIPAV script recorder.

ScriptRecorder - Class in gov.nih.mipav.model.scripting

A singleton class used to add lines to the script currently being recorded (if one is being recorded at all).

ScriptRecorder() - Constructor for class gov.nih.mipav.model.scripting.ScriptRecorder

Creates a new ScriptRecorder object.

ScriptRecordingListener - Interface in gov.nih.mipav.model.scripting

An interface for classes which want to be notified of changes to the script currently being recorded by MIPAV.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.provenance.actions.ActionOpenImage

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.provenance.actions.ActionStartMipav

unused

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.provenance.actions.ActionStopMipav

unused

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionBase

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeModality

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeName

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeUnits

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionClone

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionCloseFrame

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionExit

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionExtractImageB

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionOpenVOI

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveImage

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveTab

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs

scriptRun(ParameterTable) - Method in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in interface gov.nih.mipav.model.scripting.ScriptableActionInterface

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in interface gov.nih.mipav.view.dialogs.ActionDiscovery

Starts execution of the action.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.view.dialogs.BlankJistHook

scriptRun(ParameterTable) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Sets up the action dialog state and then executes it.

scriptRun(ParameterTable) - Method in class gov.nih.mipav.view.dialogs.MTryJistHook

ScriptRunner - Class in gov.nih.mipav.model.scripting

Executes a script with a set of images.

ScriptRunner() - Constructor for class gov.nih.mipav.model.scripting.ScriptRunner

Creates a new ScriptRunner object.

ScriptRunner.ScriptThread - Class in gov.nih.mipav.model.scripting

A separate thread used to execute a given script (the image and voi table should already be set up before the thread is started).

scriptStringParams - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

scriptTable - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

DOCUMENT ME!

scriptTextArea - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

DOCUMENT ME!

ScriptThread(String) - Constructor for class gov.nih.mipav.model.scripting.ScriptRunner.ScriptThread

Creates a new ScriptThread object.

scriptToolBar - Variable in class gov.nih.mipav.view.ViewControlsImage

DOCUMENT ME!

ScriptTreeNode - Class in gov.nih.mipav.view.dialogs

Class used as a DefaultMutableTreeNode, except it stores a default name that can be recalled at any time if the users deletes the image/voi.

ScriptTreeNode(Object, int) - Constructor for class gov.nih.mipav.view.dialogs.ScriptTreeNode

ScriptVariable - gov.nih.mipav.view.Argument.InstanceArgument

ScriptVOI - Class in gov.nih.mipav.view.dialogs

ScriptVOI(VOI, String, String) - Constructor for class gov.nih.mipav.view.dialogs.ScriptVOI

ScriptVOI(String, String) - Constructor for class gov.nih.mipav.view.dialogs.ScriptVOI

scriptVOIs - Variable in class gov.nih.mipav.view.dialogs.ScriptImage

SCROLL_PANE_SIZE - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Min/max size of all text boxes contained in scroll panes.

scroll_size - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

scrollButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

The button that indicates whether this triframe is linked with tri-frames of similar dimensionality.

scrollButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

ScrollCorrector - Class in gov.nih.mipav.view

Corrects a strange behaviour with JScrollPane when lines are appended from another thread.

ScrollCorrector() - Constructor for class gov.nih.mipav.view.ScrollCorrector

Does nothing.

scroller - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Scroll pane that control the resizing of the panel.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Scroll pane.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

The scroll pane holding the panel content.

scroller - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D

The scroll pane holding the panel content.

scrollingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

Box to hold table information.

scrollingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor

Box to hold table information.

scrollOriginalCrosshair - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Flag telling the crosshair movement to update slice in original image frame.

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

Scroll Pane for the Text Area

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

This is the scroll pane for the label list panel

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.dialogs.JDialogText

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.JPanelChecklist

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameImage

The scrollPane where the image is displayed.

scrollPane - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

The scrollPane where the image is displayed.

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages

The scroll pane containing the image list

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

scrollPane - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

scrollPaneDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF

DOCUMENT ME!

scrollPanel - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Scroll panel that holding all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Scroll the control panel when the frame changes size.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Scroll panel that holding all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Scroll panel that holding all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Scroll panel that holding all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Scroll the control panel when the frame changes size.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

Scroll panel that holding the all the control components.

scrollPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Scroll panel that holding the all the control components.

scrollPaneSeparateA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

scrollPaneSeparateB - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

scrollPaneSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

ScrollPopupMenuLayout() - Constructor for class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout

ScrollTextArea() - Constructor for class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea

Creates a new ScrollTextArea object.

ScrollTextArea(Color) - Constructor for class gov.nih.mipav.view.components.WidgetFactory.ScrollTextArea

Creates a new ScrollTextArea object.

scselect(double[][], double[], int, String, String[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

scSer - Variable in class gov.nih.mipav.model.file.FileGESigna4X

scSer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

scTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

22 scan duration in seconds.

sculptData(ModelImage, int, int, byte[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Sculpt the ModelImage and Textures at the index.

SculptDrawn - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

sculptGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sculpting user-interface panel:

sculptHeight - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sculpt region height.

sculptImage(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

Called by the TextureSculptor or VolumeSculptor objects.

SculptImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

Sculptor - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Volume Sculpturing allows the user to draw a region on the screen in the volume render view, and to remove the parts of the volume covered by that region.

Sculptor() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

Sculptor_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Volume Sculpturing allows the user to draw a region on the screen in the volume render view, and to remove the parts of the volume covered by that region.

Sculptor_WM(GLCanvas) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Constructor.

sculptorPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sculptor panel.

SculptShape - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

sculptWidth - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sculpt region width.

SCURole - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect

Indicates the Serivce Class User (SCU) (i.e.

scv0v1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

scv0v1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

scv0v2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

scv0v2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

scv1v2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

scv1v2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

sd - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint

sd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor

SD - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic

sd_weighting(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D

sData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

sData - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

SData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.SData

sdChars - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas

SDIAG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SDSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sdviH - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

se - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

se - Variable in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2

Se - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

se_beta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

se_eta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

se2xy - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

se2xz - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

se2yz - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

se3 - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

seActualDT - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

16 - Actual Series Date/Time Stamp.

seAllocKey - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

154 - 13 bytes - Process that allocated this record.

seamCellIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

search() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

Find the best fit for the VOI polygon we have loaded into this algorithm.

search() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

Search.

search(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

Search.

Search(double, double, double, CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearch

search_direction - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

searchAlgorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

searchAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

searchAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

searchAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

searchAlgorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

searchAngle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal

The search angles to use in each dimension (from -searchAngle to searchAngle) when registering the original image against the flipped image.

searchChildDir(File) - Method in class gov.nih.mipav.model.file.FileBRUKER

Utility method for searching for the d3proc file that indicates a BRUKER file has been found, note method is recursive to a maximum level of 3.

searchEdge(int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.GrowingPlatePattern

searchEdge(int[][], int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePattern

searchField - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

searchFieldSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

searchForDicom(File) - Static method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

searchForImageTag(byte[], byte[], int) - Method in class gov.nih.mipav.model.file.FileDicomBase

Performs internal search for the image tag in a dicom file, given an appropriate endianess.

SearchI(int, IDList, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

searchIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

searchOnBottom(int[][], int, int, int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical

searchOnLeft(int[][], int, int, int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern

searchOnRight(int[][], int, int, int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern

searchOnTop(int[][], int, int, int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical

searchOptimalPath() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

searchOptimalPath() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

searchRegion(int[][], int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern

searchSingleIsLandOnLeft(int[][], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal

searchSingleIsLandOnRight(int[][], int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal

searchText() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

searchWindowSide - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter

Side of the learning window of pixels which will be averaged.

searchWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

secCheckBox - Variable in class gov.nih.mipav.view.JPanelEditTime

permits whether or not to set this field.

secComboBox - Variable in class gov.nih.mipav.view.JPanelEditTime

value to add to this time field.

secFraction - Variable in class gov.nih.mipav.view.JPanelEditTime

DOCUMENT ME!

seChecksum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

188 - (internal use) Series Record checksum.

secind - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

secind - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

seComplete - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

192 - (internal use) Series Complete Flag.

second - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair

second - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Pair

second - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet

second - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Pair

second - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

second - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair

second - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair

secondAddress - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

secondAllowed - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

The method of Newton is allowed at the end of the iteration in some situations (large residuals).

secondAllowed - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

The method of Newton is allowed at the end of the iteration in some situations (large residuals).

secondaryEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

secondaryFields - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient

secondaryModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

DOCUMENT ME!

secondaryModel - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

secondarySort(Vector<Vector<String>>) - Static method in class gov.nih.mipav.model.file.FilenameSorter

This method takes a sorted Vector of Vectors as a parameter.

secondaryTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

DOCUMENT ME!

secondaryTable - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

secondaryTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

DOCUMENT ME!

secondBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

secondBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

secondButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

secondColor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

secondEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

integer scalar containing the number of function evaluations caused by using second derivatives in the method of Newton.

secondEval - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

integer scalar containing the number of function evaluations caused by using second derivatives in the method of Newton.

secondGaussianAmplitude - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

secondGaussianMean - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

secondGaussianMeanBin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

secondGaussianStandardDeviation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

secondi - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

secondImage - Variable in class gov.nih.mipav.model.file.FileIO

Address of second image in file.

secondImage - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

secondImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

secondImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

secondImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Second image (Base image).

secondImage - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

The registered image as specified by user through gui

secondImage - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

secondImage - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

secondIndex - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

secondIterationCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

secondKindRealArgument() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric

This code is a port of the FORTRAN routine CHGU from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 403-405.

secondMaxV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

secondMinV - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

secondName - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

secondName - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

secondOrderAttributes(ModelImage, float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.structures.VOIContour

Find the least squares fit of the points in the contour to an ellipsoid.

secondOrderAttributeslsq(float, float, int, int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.VOIContour

Finds the second order attributes.

secondParamGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

secondPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

secondr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

seconds - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

DOCUMENT ME!

SECONDS - gov.nih.mipav.model.file.FileInfoBase.Unit

Unit of measurement seconds.

SECONDS - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Unit of measurement seconds.

SECONDS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase

String version of units of measurement - seconds.

secondStageCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Initially unchecked, determined whether this algorithm performs secondStageErosion

secondStageErosion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Tells whether second stage which erodes edge values exceeding median by a factor >= aboveMedian occurs.

secondStageErosion - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

When true, sets edge values which are greater than the median intensity by a user-defined factor of aboveMedian to zero.

secondVal - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue.Values

DOCUMENT ME!

seContrast - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

118 - greater than zero if image used contrast (L/S).

secs2date(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X

DOCUMENT ME!

Secs2Mins(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Converts seconds to a MM:SS string.

Secs2Mins(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Converts seconds to a MM:SS string.

section1_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section1_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section1_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section1_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section1_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section1_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section1_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section1_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section1_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section1_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section2_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section2_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section2_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section2_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section2_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section2_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section2_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section2_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section2_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section2_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section3_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section3_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section3_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section3_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section3_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section3_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section3_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section3_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section3_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section3_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section4_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section4_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section4_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section4_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section4_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section4_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section4_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section4_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section4_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section4_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section5_degree_lowerHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section5_degree_lowerHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section5_degree_lowerHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section5_degree_lowerHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section5_degree_lowerHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section5_degree_lowerHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section5_degree_lowerHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section5_degree_lowerHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section5_degree_lowerHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section5_degree_lowerHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section5_degree_upperHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section5_degree_upperHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section5_degree_upperHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section5_degree_upperHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section5_degree_upperHalf_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section5_degree_upperHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section5_degree_upperHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section5_degree_upperHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section5_degree_upperHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section5_degree_upperHalf_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section6_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section6_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section6_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section6_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section6_degree_end - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

section6_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

section6_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

section6_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

section6_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

section6_degree_start - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

sectionThickness - Variable in class gov.nih.mipav.model.file.FileInfoCZI

sectorSize - Variable in class gov.nih.mipav.model.file.FileZVI

secuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

secuc() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

seDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

12 - Allocation series Date/Time Stamp.

seDeltaCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

168 - (internal use) number of updates to header.

seDesc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

20 - 30 bytes - Series Description.

seDiskID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

6 - Disk ID for this series - GE internal.

seed - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

seed - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

seed - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

seed - Variable in class gov.nih.mipav.model.structures.jama.LUSOL

seed - Variable in class gov.nih.mipav.model.structures.jama.LUSOLEP

seed - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

seed - Variable in class gov.nih.mipav.model.structures.jama.METIS

seed(int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest

seed(int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront

seed(int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting

seed(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Sets up directed graph from the seed point.

seed(AlgorithmGaussianMixtureModelEM.ClassSig, int, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

seed(Point) - Method in class gov.nih.mipav.view.RubberbandLivewire

Sets up directed graph from the seed point.

Seed(Vector3f, short) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed.Seed

Creates a new Seed object.

seed2DPt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Seed point for 2D datasets.

seed3DPt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Seed point for 3D datasets.

seededCosts - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

seededCosts - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

seedFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront

seedPaintBitmap - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Buffer used to remember the area painted around the last seed point for region growing.

seedPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

seedPoint - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

seedPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

List of points where we have grown a region from.

seedPoints - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

VOI containing the possible seed points.

seedVal - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Seed value to start the region grow.

seedValB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

seedValG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

seedValR - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

seedValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed.Seed

DOCUMENT ME!

seedValue - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

The seed value last entered by the user

seedValueTF - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Watershed seed value

seedVector - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed

DOCUMENT ME!

seek(int) - Method in class gov.nih.mipav.model.file.FileDicomBase

Seeks to a point in the buffer.

seek(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

seek(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

seek(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader

Seek.

seek(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Seek.

seekToEndOfGroupTwoTags() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Strips preamble and group 2 tags from ioBuffer if present.

seExamNo - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

8 - Exam number.

sefAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

DOCUMENT ME!

seg_nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

seg_nameTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

seg_nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

seg_nameVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

segAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

DOCUMENT ME!

segBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

segBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

segBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

segImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

Displays classes to which pixels belong.

segImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

Class segmentation shown.

segKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

segKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

segm_mask(libdt.PatchBatchExtractor, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt

segm_mask(libdt.VidSegm) - Method in class gov.nih.mipav.model.algorithms.libdt

segMaskImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

segMaskImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

segment() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

segment_graph(int, int, ArrayList<AlgorithmGraphBasedSegmentation.edge>, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation

SEGMENT_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader

The 0xFF byte that signals the start of a segment.

SEGMENT_SOS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentReader

Private, because this segment crashes my algorithm, and searching for it doesn't work (yet).

segment2Colors() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation

DOCUMENT ME!

Segment2f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Segment2f

segment3Colors() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

segmentation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

Driver to do the auto segmentation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

Driver to do the auto segmentation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

Driver to do the auto segmentation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

Driver to do the auto segmentation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

Driver to do the auto segmentation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

Driver to do the auto segmenation with AAM model.

segmentationAuto() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

Driver to do the auto segmenation with AAM model.

segmentationBoundaries - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

segmentationContour - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

segmentationCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

segmentationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

segmentationGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

segmentationGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

segmentationImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Image with areas marked with values indicating that they are special tissue types (vessels, etc).

segmentationImage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Image with areas marked with values indicating that they are special tissue types (vessels, etc).

segmentationImage - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

An image with areas designated as special (vessels, etc).

segmentationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

segmentationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

segmentationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

segmentBW() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation

DOCUMENT ME!

segmentCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

segmentCurvesByTangent() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments

segmentCurvesByTangent produces a segmentation of the curves stored in the m_akCurvePosition data member.

SegmentDetails(Point2D, Point2D) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

segmentedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

segmentFromFuzzyC(Vector<Vector<ModelImage>>, int, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Apply the Fuzzy-C means segmentation to CED image stack.

segmentIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

segmentLattice(ModelImage, boolean, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

segmentLattice(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

segmentMesh(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments

DOCUMENT ME!

segmentNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

segmentNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

segmentNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

segments - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

segmentVideo(libdt.VidSegm, libdt.Mat[], int, int, int, int, libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt

segmentVideoSequence(libdt.VidSegm, Vector<String>, int, int, int, int, String) - Method in class gov.nih.mipav.model.algorithms.libdt

segs - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t

seImageCt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

200 - (internal use) Last Image Number Used.

seLandmarkCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

136 - Landmark counter.

seLastMod - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

150 - Date/Time of last change.

SELECT - Static variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

select_colors(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg

select_ncolors(libjpeg.jpeg_decompress_struct, int[]) - Method in class gov.nih.mipav.model.file.libjpeg

SELECT_ON_JUMP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

SELECT_ON_JUMP - Static variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

SELECT_PERCENT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

SELECT_PERCENT - Static variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

select_working_set(int[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU

select_working_set(int[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

select_working_set(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU

select_working_set(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

select3DMarker(Vector3f, Vector3f, Vector3f, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

select3DMarker(Vector3f, Vector3f, Vector3f, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

selectAll() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Method to select all the slices in an image.

selectAll() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Method to select all the slices in an image.

selectAllVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

selectAllVOIs(boolean) - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Deprecated.

selectAnnotation(Vector3f, Vector3f, Vector3f, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

selectAnnotations(Vector3f, Vector3f, Vector3f, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

selected - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel

selected - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

id for the selected paint mask.

selected - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts

selected - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

SELECTED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

SELECTED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice

selectedArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

selectedBorderColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

color for the line border surrounding each selected image in the light-box.

selectedBorderColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

Color for the line border surrounding each selected image in the light-box.

selectedBorderSize - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

spacing for the selected line border surrounding each image in the light-box.

selectedBorderSize - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

Spacing for the selected line border surrounding each image in the light-box.

selectedCardioid - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

selectedCircle - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

selectedDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

SelectedEigenvalue - Class in gov.nih.mipav.model.structures.jama

SelectedEigenvalue() - Constructor for class gov.nih.mipav.model.structures.jama.SelectedEigenvalue

Creates a new SelectedEigenvalue object.

SelectedEigenvalue2 - Class in gov.nih.mipav.model.structures.jama

SelectedEigenvalue2() - Constructor for class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2

Creates a new SelectedEigenvalue object.

selectedEllipse - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

selectedFile - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel

Currently used file

selectedFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

selectedHyperbola - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

selectedImages - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

the selectedImages contains the *real* slice numbers -- not the index of a slice on a page.

selectedImages - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

The selectedImages contains the *real* slice numbers -- not the index of a slice on a page.

selectedLine - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice

selectedList - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

All directory-tree selected directories are listed for user-consumption in this whitespace.

selectedList - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

List of selected VOIs.

selectedList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

List of selected VOIs.

selectedListIndicies - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

selectedMaskToPaint(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

Converts the selected mask to paint.

selectedName - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat

DOCUMENT ME!

selectedNameA - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages

DOCUMENT ME!

selectedNameB - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages

DOCUMENT ME!

selectedNode - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseAdapter

DOCUMENT ME!

selectedNodeName - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseAdapter

DOCUMENT ME!

selectedOrientation - Variable in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage

selected orientation

selectedParabola - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

selectedPrefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

selectedRoot - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

DOCUMENT ME!

selectedRoot - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

DOCUMENT ME!

selectedRow - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D

indices of selcted rows to remove

selectedRow - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D

indices of selcted rows to remove

selectedRow - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D

indices of selcted rows to remove

selectedRowDicom - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

selectedRows - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

indices of selcted rows to remove

selectedRows - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

indices of selcted rows to remove

SelectedSurface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

SelectedTab - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

selectedTimeSlices - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

The selected Time Slices vector contains the real slice number and time slice number in the format (slice #).

selectedToEnd - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.PlayMouse

DOCUMENT ME!

selectedToEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.PlayMouse

DOCUMENT ME!

selectedToEnd - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.PlayMouse

DOCUMENT ME!

selectedVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

selectedVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

selectedVOI - Variable in class gov.nih.mipav.view.ViewJPopupVOI

selectedVOI(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener

handles the VOI being selected. -- a state-change.

selectedVOI(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter

Handles the VOI being selected. -- a state-change.

selectedVOI(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter

Handles the VOI being selected. -- a state-change.

selectedVOI(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter

Handles the VOI being selected. -- a state-change.

selectedVOI(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

selectedVOIModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

The tree of VOIs, composed of an image with children VOIs

selectedVOIModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

The tree of VOIs, composed of an image with children VOIs

selectedVOIset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance

Vector of all VOIs that will have calculations performed.

selectedVOIset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations

Vector of all VOIs that will have calculations performed.

selectedVOIset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Vector of all VOIs that will have calculations performed.

selectedVoiTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

selectedVoiTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

selectFile() - Method in class gov.nih.mipav.view.dialogs.InstanceVOI

Select either VOI file or Ply file.

selectFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI

Select either VOI file or Ply file.

selectFileA - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

Indicates the source file for list A.

selectFileB - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

Indicates the source file for list B.

selectFileInput() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

Select input .ply file.

selectFileInput() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

Select input .ply file.

selectFileName() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT

Open an image based on the suffix of the file.

selectFileOutput() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

Select input .ply file.

selectFileOutput() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

Select input .ply file.

selectGroupDir() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

Let user choose the Group trained model directory to save.

selectIndividualTSlices - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

selection - Variable in class gov.nih.mipav.view.dialogs.JDialogLivewire

DOCUMENT ME!

selection - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

SELECTION - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback

DOCUMENT ME!

selectionChanged(UpdateVOIEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

responds to the volume of interest (VOI) change events.

selectionChanged(UpdateVOIEvent) - Method in interface gov.nih.mipav.model.structures.UpdateVOISelectionListener

handles an UpdateVOIEvent as a selection change.

selectionChanged(UpdateVOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

responds to the volume of interest (VOI) change events.

SelectionListener(JTable, JTextArea) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDataProvenance.SelectionListener

selectionMenu - Variable in class gov.nih.mipav.view.ViewJPopupVOI

DOCUMENT ME!

selectionModel - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer

selectionModel - Variable in class gov.nih.mipav.view.CheckTreeManager

selectionOffset - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

selectLattice(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

selectLattice(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

selectLUTa() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Forces the panel to display the LUTB panel.

selectLUTb() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Forces the panel to display the LUTB panel.

selectMSPoints(double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

selectNone() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Method to select none of the slices in an image.

selectNone() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Method to select none of the slices in an image.

selector - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

selector - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

selector - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

Allows the user to modify listB based on either the file provided in selectFileA or selectFileB.

selectOrientationText(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Selection of text for the table and the editpanel.

selectOrientationText(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

selection of text for the table and the editpanel.

selectorMtf - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

selectorMtf - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

selectorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin

The sub-gui *

selectRangeInput() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Sets the fields' value and accessability based on the state of the drop-down.

selectSlices(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender

Select along which axis and in which direction slicing in the volume is to be performed.

selectVOI(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

selectVOI(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager

selectVOI(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

self_destruct(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

self_test - Variable in class gov.nih.mipav.model.algorithms.NelderMead

SELF_TEST - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility

DOCUMENT ME!

SELF_TEST - Static variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP

DOCUMENT ME!

selfAdd(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial

selfAdd(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble

Adds the argument to the value of this.

selfMultiply(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial

selfMultiply(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble

Multiplies this by the argument, returning this.

selfShadow(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enables/Disables self-shadowing in the Surface mode.

SelfShadow(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Enables/Disables self-shadowing in the Surface mode.

SelfShadow(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Enables/Disables self-shadowing for the Surface mode.

selfTest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

selfTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

selfTest - Variable in class gov.nih.mipav.model.algorithms.Integration2

selfTest - Variable in class gov.nih.mipav.model.algorithms.Integration2EP

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle

selfTest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

selfTest() - Method in class gov.nih.mipav.model.algorithms.CDFLIB

selfTest() - Method in class gov.nih.mipav.model.algorithms.CubicEquation

selfTest() - Method in class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest

selfTest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

selfTest() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility

DOCUMENT ME!

selfTest() - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP

DOCUMENT ME!

selfTest() - Method in class gov.nih.mipav.model.algorithms.MotionDetection

selfTest() - Method in class gov.nih.mipav.model.algorithms.Poly

selfTest() - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

selfTest() - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

selfTest() - Method in class gov.nih.mipav.model.file.FileJPEG2000

selfTest() - Method in class gov.nih.mipav.model.structures.BSplineKernelFunction

selfTest() - Method in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction

selfTest(int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper

selfTest2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

selfTest2() - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper

selfTest3() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

semi_bcd_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SEMI_BCD_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

semi_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SEMI_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration

semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration

semiMajorAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMajorAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

semiMajorAxisLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMajorAxisText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMajorAxisText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

DOCUMENT ME!

semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration

semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration

semiMinorAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMinorAxis - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

semiMinorAxisLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMinorAxisText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

semiMinorAxisText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

semiXLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis X label.

semiXText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis X text field.

semiYLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis Y label.

semiYText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis Y text field.

semiZLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis Z label.

semiZText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point semi axis Z text field.

seNacq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

140 - Number of acquisitions.

send - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

send_count_list - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d

sendActionOnStart(String) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Sets a command that should be sent to the renderer after it is started.

sendAllToListA - Variable in class gov.nih.mipav.view.JPanelListController

DOCUMENT ME!

sendAllToListB - Variable in class gov.nih.mipav.view.JPanelListController

DOCUMENT ME!

sendAllToTreeA - Variable in class gov.nih.mipav.view.JPanelTreeController

DOCUMENT ME!

sendAllToTreeB - Variable in class gov.nih.mipav.view.JPanelTreeController

DOCUMENT ME!

sendBinary(byte[], int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_FileIO

Writes bytes from the data buffer into the file stream.

sendBinary(byte[], int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Dummy method and should be overloaded by DICOMPDUService.

sendBinary(byte[], int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CommsLink

Actual binary data to be sent.

sendBinary(byte[], int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Actual binary data to be sent.

sendButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendCancelRQ(int, DICOM_PDUService) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sends a C-CANCEL-MOVE-RQ to the Service Class Provider; ie.

sendDestCBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendFindCancelRQ(int, DICOM_PDUService) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Send a C-CANCEL-FIND-RQ to the Service Class Provider;ie.

sendImages(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store

Recursily desends the directory tree to send the images.

sendModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendMoveRequest(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sends a move request at the current level, setting up the data objects appropriately.

sendMoveRQ(DICOM_PDUService, DICOM_Object, byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sends a move request.

sendMTFValues() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream

sendPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

sendQuery(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

This method sets up the information for the DICOM query depending on the type, sends the query, and parses the information that the server sends back.

sendQuery(DICOM_PDUService, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sends patient root query to remote DICOM Q/R server.

sendQueryThread - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendReportWeb(String, String, String, String, String, String, String, ReportBugBuilder.BugType, ArrayList<String>, ArrayList<String>) - Static method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

sendSelectionToListA - Variable in class gov.nih.mipav.view.JPanelListController

left arrow or up arrow.

sendSelectionToListB - Variable in class gov.nih.mipav.view.JPanelListController

right arrow or down arrow.

sendSelectionToTreeA - Variable in class gov.nih.mipav.view.JPanelTreeController

left arrow or up arrow.

sendSelectionToTreeB - Variable in class gov.nih.mipav.view.JPanelTreeController

right arrow or down arrow.

sendStatusClearButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendStatusTArea - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sendStoreRQ(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Store

Reads in the DICOM image file from disk, composes a DICOM C-Store request and sends the request.

sendTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sens_addr - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

sensitivity addressing size (0=auto/2/4 bytes)

sens_MH - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

sensitivity method for MH (-1,0-7)

sens_range - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

sensitivity range (0-3)

sens_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

enables writing of ESD, (0/2/4 bytes)

sens_TPH - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

sensitivity methods for TPHs (-1,0-7)

sens_TPH_tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

tile number of sensitivity specification (>=0)

sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES

sensi_meth - Variable in class gov.nih.mipav.model.algorithms.CVODES

sensingMethod - Variable in class gov.nih.mipav.model.file.FileSVS

sensingMethod - Variable in class gov.nih.mipav.model.file.FileTiff

sensitivityArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

sensorModel - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

sensorModel - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

sensorType - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

sensorType - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

sent_table - Variable in class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL

sent_table - Variable in class gov.nih.mipav.model.file.libjpeg.JQUANT_TBL

seNumArch - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

196 - (internal use) Number of Images Archived.

seNumImages - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

204 - (internal use) Number of Images Existing.

senw - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

If true southeast-northwest direction calculated.

senw - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

If true southeast-northwest direction calculated.

senw - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

senw - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

senwCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

senwCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

sep - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Sep_FIR_filter() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Sep_FIR_filter

sep_symm_nmtf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SEP_SYMM_NMTF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

sep_upsample(libjpeg.jpeg_decompress_struct, byte[][][], int[], int, byte[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg

sep_upsample(libjpeg.jpeg_decompress_struct, short[][][], int[], int, short[][], int[], int) - Method in class gov.nih.mipav.model.file.libjpeg

SEP_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg

sePadding - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

432 - 588 bytes.

separable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase

If true convolution kernels are separable.

separable - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

DOCUMENT ME!

separable - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

DOCUMENT ME!

separable - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

DOCUMENT ME!

separable - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

DOCUMENT ME!

separableConvolution(float[], int, int, float[][], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

convolution with a separable kernel (the kernel is 3x{kx,ky,kz})

separableConvolution(float[], int, int, int, float[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

convolution with a separable kernel (the kernel is 3x{kx,ky,kz})

separableGaussianKernel(float, float) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

separableGaussianKernel(float, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

SEPARATE_COMPONENT - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

SEPARATE_COMPONENT - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

SEPARATE_VOIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

SEPARATE_VOIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

SEPARATE_VOLUME_TISSUE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

SEPARATE_VOLUME_TISSUE - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

separateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

separateDimResButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

separatePanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

separateThread - Variable in class gov.nih.mipav.view.ViewJProgressBar

DOCUMENT ME!

separateValues(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo

DOCUMENT ME!

separateValues(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

Divides space separate strings into an array of strings.

separateVectorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

separateVolumeTissueRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

separator - Static variable in class gov.nih.mipav.view.ViewMenuBar

Separator that can be added in between menu items.

sepCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

DOCUMENT ME!

sepCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

DOCUMENT ME!

sepCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

DOCUMENT ME!

sepCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

DOCUMENT ME!

sepcualarColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

DOCUMENT ME!

sepcualarColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

DOCUMENT ME!

sepcualarColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe

DOCUMENT ME!

sepcualarColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

DOCUMENT ME!

sepcualarColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

DOCUMENT ME!

sePdsA - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

176 - Pixel data size - as stored.

sePdsC - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

180 - Pixel data size - Compressed.

sePdsU - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

184 - Pixel data size - Uncompressed.

sepFound - Variable in class gov.nih.mipav.model.file.FileMetaImage

sePlane - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

72 - Most-like Plane (for L/S).

sePseq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

132 - Last Pulse Sequence Used (L/S).

SEQ_ITEM_BEGIN - Static variable in class gov.nih.mipav.model.file.FileDicom

The tag marking the beginning of a dicom sequence.

SEQ_ITEM_END - Static variable in class gov.nih.mipav.model.file.FileDicom

The tag marking the end of a dicom sequence.

SEQ_ITEM_UNDEF_END - Static variable in class gov.nih.mipav.model.file.FileDicom

The tag marking the end of an undefined length dicom sequence.

seqNo - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream

Bug fix from Forums - next one line.

seqNo - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream

Bug fix from Forums - next one line.

seqTags - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

seqToUnseq - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

seqToUnseq - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

sequence - Variable in class gov.nih.mipav.model.file.FileDicomSQ

Sequences are composed of items (DICOM items) and store in a vector object.

sequence - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

DOCUMENT ME!

SEQUENCE - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

A sequence is encoded in the tag's value

SEQUENCE - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Indicates tag value is a sequence tag

SequenceAuthor - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

sequenceField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

sequenceFinish - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

sequenceInformationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Panels used by this dialog box

sequenceName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

SequenceName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel

DOCUMENT ME!

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i

DOCUMENT ME!

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p

DOCUMENT ME!

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s

DOCUMENT ME!

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.Bessel

number of members of the sequence.

sequenceNumber - Variable in class gov.nih.mipav.model.algorithms.BesselEP

number of members of the sequence.

SequencePrgName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

sequenceStart - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

sequenceStart - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

DOCUMENT ME!

sequenceStart - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

Used as part of the image name; represents beginning of sequence for all processed image sets.

sequenceStep - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

sequenceText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

SequenceType - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

sequenceVariant - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

SequenceWkcName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SEQUENCY - Static variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

SEQUENCY - Static variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

Use serialVersionUID for interoperability.

sequencyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

SequentialAccessTestBase() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

SequentialByteArrayReader(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

SequentialByteArrayReader(byte[], int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

SequentialByteArrayReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialByteArrayReaderTest

SequentialReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader

seRadius - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment

seRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

serialArrayListFlavor - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler

DOCUMENT ME!

serialNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector

serialNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource

DOCUMENT ME!

serialNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Microscope

serialNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective

serialVersionUID - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback

serialVersionUID - Static variable in exception gov.nih.mipav.model.algorithms.ContourPlot.ImageSaver.ImageSaverException

serialVersionUID - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor

serialVersionUID - Static variable in class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.algorithms.RandomNumberGen

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in exception gov.nih.mipav.model.dicomcomm.DICOM_Exception

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Object.GroupElements

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_ObjectList

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.DicomDictionary

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileDicomKey

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileDicomSQ

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileDicomTag

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileDicomTagInfo

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileDicomTagTable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoAfni

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoAvi

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoBioRad

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoBRUKER

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoCheshire

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoCOR

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoDicom

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoDM3

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoFits

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoICS

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoImageXML

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoInterfile

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoLattice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoLSM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMedVision

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMicroCat

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMinc

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMincHDF

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoMRC

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoOME

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoRaw

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoSTK

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoSurfaceXML

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoTiff

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoTMG

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileInfoXML

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileMincAttElem

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileMincDimElem

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileMincHDF.HDFNode

serialVersionUID - Static variable in class gov.nih.mipav.model.file.FileMincVarElem

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.ImageProcessingException

serialVersionUID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.JpegProcessingException

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.MetadataException

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.PngProcessingException

serialVersionUID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Rational

serialVersionUID - Static variable in exception gov.nih.mipav.model.file.MetadataExtractor.TiffProcessingException

serialVersionUID - Static variable in class gov.nih.mipav.model.file.XMLParameter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.file.XMLPSet

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.scripting.ImageVariableTable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in exception gov.nih.mipav.model.scripting.ParserException

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.scripting.VariableTable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferBoolean

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferByte

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferDouble

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferFloat

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferInt

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferLong

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferShort

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferUByte

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferUInt

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.BufferUShort

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.CustomHashtable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.event.VOIEvent

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.event.VOIVectorEvent

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.MatrixHolder

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelHistogram

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelRGB

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelSerialCloneable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.Point3D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.SortingTableModel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.TableSorter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in exception gov.nih.mipav.model.structures.TokenizerException

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.TransferFunction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.UneditableTableModel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.UpdateVOIEvent

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIBaseVector

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIContour

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOILine

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIPoint

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIPolyLineSlice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIProtractor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIText

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.model.structures.VOIVector

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.AlternatingTableCellRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.BarMeter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.BorderedButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer

serialVersionUID - Static variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel

serialVersionUID - Static variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.components.JPanelColorChannels

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.components.JPanelSigmas

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.components.WidgetFactory.ScrollTextArea

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAHE

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnimate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogAVIChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase.OKAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBlankImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBrightness

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogClose

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogConcat

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCrop

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDilate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogErode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfo

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFlip

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRET

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogGVF

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHessian

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogInvert

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLivewire

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMask

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMask3D4D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.ComboBoxRenderer2

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions.FontBoxRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNColors

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOpen

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOrder

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPadImages

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogQuantify

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogReslice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRotate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.CustomCellRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJListTarget

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.DropJTreeTarget

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogServer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSnake

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSubset

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSwap34

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogText

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTextGE

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogUltErode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVABRA

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOITreeRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelLogicalOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOITreeRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticFileFormatOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreeRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.DICOMDisplayer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode

serialVersionUID - Static variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

generated serial id

serialVersionUID - Static variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

generated serial id

serialVersionUID - Static variable in class gov.nih.mipav.view.graphVisualization.MipavNodeRenderer

generated serial id

serialVersionUID - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorEvent

this is here because eclipse stated to so I used generate a UID option

serialVersionUID - Static variable in class gov.nih.mipav.view.JFrameHistogram

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelAnonymizeImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelChecklist

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEdit

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditAxisOrientation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditBoolean

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditChar

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditDate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditDefault

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditImageOrientation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditModality

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditOrientation

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditRace

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditSetOrParam

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditSex

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditTime

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelEditValueType

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelFileSelection

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelHistogram

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelListController

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelProgressBar

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelStatisticsList

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.JTreeDICOM

serialVersionUID - Static variable in class gov.nih.mipav.view.LineMeter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.MIPAVTableCellRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.MipavUtil

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.DownButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.EmptyButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.LeftButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.LeftRotateButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.RightButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.RightRotateButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.UpButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.DownButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.EmptyButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.LeftButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.RightButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.UpButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.DownButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.LeftButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.RightButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.UpButton

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.DrawingPane

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JPanelAVIChoice

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT.DrawingPanel

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB.DrawingPanel

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JPanelRendererBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.MouseEventVector

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.SceneState

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogVolumeAnnotation

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.DrawingPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

eclipse generated this

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationPicker

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

serialVersionUID - Static variable in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOIVector

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.PolylineVector

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageReduceEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.OrderIndpTransparencyEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.PolylineVector

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.ScaledTextureEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceClipEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.IntVector

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

serialVersionUID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

serialVersionUID - Static variable in class gov.nih.mipav.view.Rubberband

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandEllipse

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandLine

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandLivewire

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandPolyline

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandProtractor

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandRectangle

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.RubberbandRectangleVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewControlsImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewFileChooserSubsample

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewFileTreeNode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewImageDirectory

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJColorChooser

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentAnimate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentFunct

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentGraph

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentHistoLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentHistoRGB

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentLUTTable

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentPreviewImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameAnimate

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameBase

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameFastMarching2

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameFastMarching3

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameGraph

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameMemory

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameMessage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameMessageGraph

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages.ImageCellRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage.PaintBoxRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJPanelHistoLUT

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJPopupPt

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJPopupVOI

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJProgressBar

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewJProgressBarMulti

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewMenuBuilder.QuickList

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewSplashScreen

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewTableModel

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder.JScriptToolBar

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder.PaintBoxRenderer

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.ViewVOIVector

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VOIContourNode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VOIFrameNode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VOIGroupNode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VOIGroupTree

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VOIOrientationNode

Use serialVersionUID for interoperability.

serialVersionUID - Static variable in class gov.nih.mipav.view.VolumePositionFrame

Use serialVersionUID for interoperability.

series - Variable in class gov.nih.mipav.model.file.FileGESigna4X

series - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

SERIES_LEVEL - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

seriesBody - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesDate - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesDate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesDate - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesDescrip - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesDescription - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesDescription - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesExists(JDialogLoadLeica.LeicaSeries) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

DOCUMENT ME!

seriesFileInfoTreeMap - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

This is an ordered map of series number and seriesFileInfoTreeSet

seriesFileInfoTreeSet - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

This is an ordered list of files per series number

seriesHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesHeaderID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesHeaderID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesInstanceUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UID

String representing the Series Instance UID

seriesInstanceUID - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

seriesLarge - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesList - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

DOCUMENT ME!

seriesMod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesName - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator

DOCUMENT ME!

seriesName - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

seriesNo - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesNum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

10 - series number.

seriesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

seriesNumberCounters - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

This is a hashmasp of series numbers and corresponding counter for the number of images in each series

seriesNumberEqual(String, FileInfoDicom) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

seriesOp - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesOptionBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

seriesPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesPerfPhy - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesPos - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesProcessName - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesProcessName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesProtocol - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesPSDName - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesPSDName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesRawDataSystemID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesRawDataSystemID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesRevisionSubnumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesSmall - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesStepDate - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesStepDescrip - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesStepID - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesStepTime - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesSystemGenerationID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesSystemGenerationID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

seriesTableModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

seriesTableSorter - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

seriesTaskID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesTaskID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

seriesTime - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

seriesType - Variable in class gov.nih.mipav.model.file.FileGESigna4X

seriesType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

seriesUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

336 - 32 bytes.

seriesUID - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

serif12 - Variable in class gov.nih.mipav.view.dialogs.JDialogBase

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

DOCUMENT ME!

serif12 - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12 - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

serif12 - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

serif12 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

serif12 - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

serif12B - Variable in class gov.nih.mipav.view.dialogs.JDialogBase

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

DOCUMENT ME!

serif12B - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

serif12B - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

serif12B - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

serrx - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

108 - series from which prescribed.

server - Variable in class gov.nih.mipav.view.dialogs.JDialogServer

DOCUMENT ME!

serverModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

serverTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

serviceID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

454 - 16 bytes.

seSortOrder - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

134 - (internal use) Image Sort Order (L/S).

seSource - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

70 - Series from which prescribed.

session_error - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

session_error - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

session_error - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

seSuid - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

0 - 4 bytes - Suite ID for this Series.

set - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

set - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

set - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineReadable

set - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Buttons used for the host tab

set(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit

Sets the stored value of this storage unit to i.

set(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator

This method initiallizes the constructor and the blockSize variable specifies the the number of objects that should be pre-allocated at a time.

set(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey

set(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey2

set(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

set(int[], boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is NOT performed.

set(int[], Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

nD set data fuction where bounds checking is performed.

set(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in byte format.

set(int, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

version of set that does NOT perform bounds checking

set(int, byte) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

set(int, byte) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

set(int, byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Version of set that does NOT perform bounds checking.

set(int, double) - Method in class gov.nih.mipav.model.algorithms.Vectornd

set(int, double) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the double data.

set(int, double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

version of set that does NOT perform bounds checking.

set(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

set(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

set(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer

set(int, float) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the data in float format.

set(int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

version of set that does NOT perform bounds checking.

set(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

set(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt

Assign the specified element to array location i.

set(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt

Assign the specified element to array location i.

set(int, int) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the int data in int format.

set(int, int) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the value in unsigned int format.

set(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Version of set that does NOT perform bounds checking.

set(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt

Assign the specified element to array location i.

set(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt

Assign the specified element to array location i.

set(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer

set(int, int, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, double) - Method in class gov.nih.mipav.model.structures.jama.JamaMatrix

Set a single element.

set(int, int, double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

set(int, int, double, boolean[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data

set(int, int, double, boolean[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataChar

set(int, int, double, boolean[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataDouble

set(int, int, double, boolean[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataFloat

set(int, int, double, boolean[]) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.DataSparse

set(int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, int, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D fast version of set that does NOT perform bounds checking.

set(int, int, int, int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

4D get data fuction where bounds checking is performed.

set(int, int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast version of set that does NOT perform bounds checking.

set(int, int, int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D set data fuction where bounds checking is performed.

set(int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

set(int, int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D get data fuction where bounds checking is performed.

set(int, long) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

set(int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

version of set that does NOT perform bounds checking.

set(int, short) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

set(int, short) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the value in unsigned short format.

set(int, PPolynomial, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the Number data in byte format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the data in float format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the Number data in int format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the Number object in long format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the Number object in short format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the Number object in byte format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the value in unsigned int format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the value in unsigned short format.

set(int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Set that does perform bounds checking.

set(int, Vector3f) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice

set(MjPolynomial1f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f

set this polynomial to have the same coefficients as those in the specified polynomial.

set(Box3, Vector<Vertex>) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid

set(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

set(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF

set(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

set(OctNode, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes

set(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

set(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

set(SparseMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

set(StartingPolynomial[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

set(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

set(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

set(Vector<Vertex>, Box3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid

Set(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

Set(Face, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter

set_axial_orientation() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

For prostate and knees projects, setting the axail orientation.

set_axial_orientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

set_bottom_pointers8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

set_bottom_pointers9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

set_coefficients() - Method in class gov.nih.mipav.model.algorithms.LSCM

set_col_blocks(Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

set_corner_thresh_SIFT3D(SIFT3D.SIFT3DC, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_coronal_orientation() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

For prostate and knees projects, setting the coronal orientation.

set_coronal_orientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

set_default_options(SuperLU.superlu_options_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

set_default_parameters(FileJPEG2000.opj_decompress_parameters) - Method in class gov.nih.mipav.model.file.FileJPEG2000

set_delta_offset(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

set_disp_frequency(NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

set_file_name(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train

set_im_Reg_SIFT3D(SIFT3D.Reg_SIFT3D, SIFT3D.Image, double[], SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_im_SIFT3D(SIFT3D.SIFT3DC, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_imgdir - Variable in class gov.nih.mipav.model.file.FileJPEG2000.img_fol_t

Enable option

set_index(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

set_lhs(CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver

set_num_cols(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

set_num_kp_levels_SIFT3D(SIFT3D.SIFT3DC, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_num_nonzeros(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

set_num_residuals(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction

set_num_rows(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

set_out_format - Variable in class gov.nih.mipav.model.file.FileJPEG2000.img_fol_t

Enable Cod Format for output

set_parameter_block_sizes(Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction

set_peak_thresh_SIFT3D(SIFT3D.SIFT3DC, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_ref_Reg_SIFT3D(SIFT3D.Reg_SIFT3D, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_rhs(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver

set_row_blocks(Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

set_sagittal_orientation() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

For prostate and knees projects, setting the sagittal orientation.

set_sagittal_orientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

set_scales_Pyramid(double, double, SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_scales_SIFT3D(SIFT3D.SIFT3DC, double, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_sigma_n_SIFT3D(SIFT3D.SIFT3DC, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_sigma0_SIFT3D(SIFT3D.SIFT3DC, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_src_Reg_SIFT3D(SIFT3D.Reg_SIFT3D, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

set_state_offset(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

set_storage_type(CeresSolver2.StorageType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

set_wraparound_pointers8(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

set_wraparound_pointers9to12(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

set2(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

set3DModelPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the 3DModel position label.

set3DModelPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Sets the 3DModel position label.

set4ByteString(MetadataExtractor.Directory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader

set4DSpecs(int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Specifications that are only relevant to 4D images.

set4DSpecs(int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Specifications that are only relevant to 4D images.

seta(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge

setA(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Accessor that sets a.

setA(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation

Accessor that sets a.

setA(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets alpha channel value of this Pixel.

SetA(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

setA_fromDouble(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

setA_fromDouble(double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the alpha value of this pixel at its current position with 0.0 as fully transparent and 1.0 as fully opaque.

seta1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets parameter a1 for tanh function

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

Sets the blend factor shader parameter between imageA and imageB.

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets blending between imageA and imageB.

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Sets the blend factor shader parameter between imageA and imageB.

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

Sets the blend factor shader parameter between imageA and imageB.

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setABBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets blending between imageA and imageB.

setABCD(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

setAboveMedian(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

sets the aboveMedian ratio for second stage erosion Edge values >= median * aboveMedian are taken to zero.

setAboveMedian(float) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Set the factor above the median at which second stage erosion occurs.

setAbsPositionLabels(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Sets the Absolute position label.

setAbsPositionLabels(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the Absolute position label.

setAbstractSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext

Sets the abstract syntax of this class.

setAcceptorRun(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

setAccessionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setACenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setACF() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder

Reads and parses an ACF file.

setACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

setAcpcMax(Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets acpc max extent.

setAcpcMin(Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets acpc min extent.

setAcpcPC(Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets acpc posterior comissure.

setAcpcRes(float) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets acps resolution.

setAcqGradMat(double[][][]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setAcquiredCardiacCycles(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setAcquiredStudyDuration(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setAcquisitionBitDepth(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAcquisitionDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAcquisitionDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAcquisitionDuration(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets acquisition duration.

setAcquisitionMatrix(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setAcquisitionMode(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setAcquisitionNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setAcquisitionTime(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setAcquisitionTime(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setAcquisitionTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAcquisitionTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAcquisitionTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAcqusitionDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAction(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setActive(boolean) - Method in class gov.nih.mipav.model.structures.VOI

Sets whether or not the VOI is active.

setActive(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets flag to indicate whether or not VOI is active.

setActive(boolean) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice

setActive(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Programmatically sets whether the GUI should be in a state to draw VOIs.

setActive(boolean) - Method in class gov.nih.mipav.view.Rubberband

Sets the rubberband to active or not active.

setActive(VOIManager, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from the VOIManager.

setActiveFrame(Frame) - Method in class gov.nih.mipav.view.ViewUserInterface

Method sets the parameter frame to top and active.

setActiveImage(int) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set active image

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Does nothing but must instantiate for this to be a subclass of ViewJFrameBase.

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set active image

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Sets the current active image.

setActiveImage(int) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setActiveImage(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewControlsImage

Sets the active image to either A or B and updates the paint spinner values.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the active image (image that should be processed for drawing VOIs and applying algorithms.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Set the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Set the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the active image for drawing VOIs.

setActiveImage(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Set the active image for drawing VOIs.

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets which image is currently active and makes the corresponding tabbed pane visible.

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.PatientSlice

Sets which image is currently active.

setActiveImage(ModelImage) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setActiveImage(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setActiveReceivers(String[]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setActiveRenderer(VolumeTriPlanarRenderBase) - Method in interface gov.nih.mipav.view.renderer.WildMagic.RendererListener

setActualReceiveFrequency(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setActualTransmitFrequency(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAdaptiveNeighbourHood(double[][], double, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

setAdditionalSets(Enumeration<XMLPSet>) - Method in class gov.nih.mipav.model.file.FileImageXML

Method to replace the enumerated list of additional sets to be written into the header file.

setAddress(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setAddSchwarzChristoffelLines(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setAdjMark(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the adjusted mark flag.

setAdjustersEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

This method will enable or disable the opacity panel's slider component and input text fields, based on the value of the boolean parameter passed into it.

setAdjustersEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

This method will enable or disable the opacity panel's slider component and input text fields, based on the value of the boolean parameter passed into it.

setAdjustersEnabled(boolean) - Method in interface gov.nih.mipav.view.renderer.ViewJComponentVolOpacityListener

setAdOpString(String) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets the advanced function string.

setAdvancedSettings(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the advanced settings.

setAdvancedSettings(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the advanced settings.

setAdvectionWeight(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the advection weight 'a'.

setAffiliation(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Sets affiliation.

setAffiliation(String, int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the investigator's affiliation using an index.

setAfniGroup(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets array of afni group xml inclusions

setAFNIOrigExtents(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the dimensions of the dicom ordered +orig image.

setAFNIOrigResolutions(float[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the resolutions of the dicom ordered +orig image.

setAFNITypeString(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AFNITypeString to HEAD_ANAT_TYPE, HEAD_FUNC_TYPE, GEN_ANAT_TYPE, or GEN_FUNC_TYPE.

setAFNIViewType(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AFNIViewType to AFNI_ORIG, AFNI_APCPC, or AFNI_TLRC.

setAFPintoDFP(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setAFPintoFRET(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setAirPressure(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setAlgo(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

setAlgo(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

Sets the algorithm type (i.e. erode, dilate)

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Sets the algorithm type (i.e. erode, dilate)

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Sets the algorithm type (i.e. erode, dilate)

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

Sets the algorithm type (i.e. erode, dilate)

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Sets the algorithm type (i.e. erode, dilate)

setAlgorithm(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Sets the algorithm type (i.e. erode, dilate)

setAlias() - Method in class gov.nih.mipav.view.ViewFileChooserBase

Creates/edits/deletes an alias for a shortcut.

setAlias(String) - Method in class gov.nih.mipav.view.ShortCutted

DOCUMENT ME!

setAll(byte) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAll(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAll(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAll(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAll(short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAllActive(boolean) - Method in class gov.nih.mipav.model.structures.VOI

Sets all contours in the VOI as active or inactive.

setAllLights(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

SetAllocator(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

SetAllocator(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

setAllOff() - Method in interface gov.nih.mipav.view.HistoLUTParent

Accessor to disable the all RGB color channels button if one of the lines has moved.

setAllOff() - Method in class gov.nih.mipav.view.JPanelHistogram

setAllOff() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Placeholder.

setAllOff() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Accessor to disable the all RGB color channels button if one of the lines has moved.

setAllOff() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Accessor to disable the all RGB color channels button if one of the lines has moved.

setAllOff() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Accessor to disable the all RGB color channels button if one of the lines has moved.

setAllOff() - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Placeholder.

setAllowDataWindow(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass

setAllSelected(boolean) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint

setAllSlices(boolean) - Method in class gov.nih.mipav.model.structures.VOIProtractor

Sets the all-slice flag.

setAllUByte(short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAllUShort(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setAllVOIs(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setAlpha(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setAlpha(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake

setAlpha(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

setAlpha(float) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setAlpha(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setAlpha(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Sets the alpha value of the widget.

setAlpha(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

setAlpha(float) - Method in class gov.nih.mipav.view.WindowLevel

Sets alpha for the notifyWindowDisplayListeners call

setAlpha(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setAlpha(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets T00, T01, and T02 in the transformation matrix.

SetAlpha(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the alpha value of the widget.

setAlphaArray(Vector3f[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of T00, T01, and T02 in the transformation matrix.

setAlphaBlend(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setAlphaBlend(int) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set alpha blend

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the alpha blending of parameter for two image displays.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the alpha blending of parameter for two image displays.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the alpha blending of parameter for two image displays.Do I need this ??

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set alpha blend

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the alpha blending parameter for two image display.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the alpha blending of parameter for two image displaying.

setAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the alpha blending of parameter for two image displaying.

setAlphaBlendSliderValue(int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

Sets the blendSlider value.

setAlphaBlendSliderValue(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Sets the blendSlider value.

setAlphaBright(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

setAlphaDim(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

setAlphaSlider(int) - Method in class gov.nih.mipav.view.ViewControlsImage

setAlphaSliderEnabled(boolean) - Method in class gov.nih.mipav.view.ViewControlsImage

DOCUMENT ME!

setAlternateRowCount(int) - Method in class gov.nih.mipav.view.AlternatingTableCellRenderer

This method sets the alternating interval.

setAlwaysSaveImgAsAnalyze(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether all imgs should be saved in analyze format (i.e., don't ask about whether to save as analyze/interfile/nifti).

setAlwaysSaveImgAsInterfile(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether all imgs should be saved in interfile format (i.e., don't ask about whether to save as analyze/interfile/nifti).

setAlwaysSaveImgAsNifti(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether all imgs should be saved in nifti format (i.e., don't ask about whether to save as analyze/interfile/nifti).

setAlwaysSaveMncAsMinc1(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether all mncs should be saved in minc1 cdf format (i.e., don't ask about whether to save as minc1/minc2).

setAlwaysSaveMncAsMinc2(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether all mncs should be saved in minc2 hdf5 format (i.e., don't ask about whether to save as minc1/minc2).

setAlwaysSplitVariables(Vector<String>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

setAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the ambient color of the surface:

setAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the ambient color of the surface:

setAmbient(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the ambient color of the surface:.

setAmbient(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the ambient color of the surface:.

setAmpFactor(float) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Accessor that sets the amplication factor.

setAmplificationIndex(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAmplitude(float) - Method in class gov.nih.mipav.view.LineMeter

Sets the most recent point on the history buffer.

setAmplitude(int) - Method in class gov.nih.mipav.view.BarMeter

sets the height of the of the bar reading.

SetAnalyzeImage(ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize

Set the analyzed image

SetAnalyzeImage(ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware

Sets the image to be analyzed.

setAnchor() - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the anchor point.

setAnchor(AlgorithmNetworkSnake.AnchorPosition) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

setAndLoad(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

setAndLoad(ModelImage, boolean, boolean, double, double, double, double) - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

setAngioFlag(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setAngle(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint

setAngle(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the rotation angle in radian by which this text object is rotated around its origin.

setAngle(float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Set the spot cone angle.

setAngle(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the field of view angle.

setAngulation(double[]) - Method in class gov.nih.mipav.model.file.FileInfoSPAR

Sets slice angulation field.

setAnimateTime(long) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setAnimating(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setAnimationSpeed(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setAnimationSpeed(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setAnimationSpeed(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

SetAnimator(Animator) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

setAnnimationSlider(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

setAnnotation(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setAnnotationDiameter(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setAnnotationMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Set the annotation mode

setAnnotationMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the annotation mode

setAnnotationMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setAnnotationPrefix(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setAnnotationPrefix(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Called when new annotations are loaded from file, replaces current annotations.

setAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setAnnotationVOIColor(String, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setAnnotationVOIColor(String, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setANormal(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAnotherPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets another mid-sag point marker for orig to ACPC transformation in dataset ordering.

setAnotherPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Sets another label based on the point.

setAnteriorPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most anterior point marker for +acpc to +tlrc transformation in dicom ordering.

setAnteriorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets anterior label based on the point.

setAnteriorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets anterior label based on the point.

setAPCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setApotomeAutoShutterUsed(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeAveragingCount(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeCamFilterHarmonics(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeCamGenericCameraName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeCamNormalize(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeCamPhaseAngles(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeFilterName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeFilterStrength(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeFullPhaseShift(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGratingPeriod(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGridName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGridPosition0(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGridPosition1(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGridPosition2(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeGridPosition3(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setApotomeProcessingMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAppFrameVisible(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Tells the application to show the MIPAV UI or suppress it (progress bars, image frames, etc).

setApplicationContext(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Sets the application context.

setApplicationContext(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Sets the application context UID.

setApplicationContextUID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Sets the application context's UID.

setAppliedCorrections(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setApplyWindowLevel(boolean) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI

Accessor that sets if the window and level slider settings are applied to the saved image.

setArbColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Sets the arbitrary clip plane color.

setArbColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the arbitrary clip plane color.

setArbiPlanePickable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

setGUI setup the flag of the arbitary clipping frame box.

setArbitraryClipPlane(float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enables the arbitrary clip plane position.

setArbitratyClip(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setArbitratyClip(Matrix3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

SetArbPlane(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Set the position of the arbitrary clipping plane, before rotation.

setArc(String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource

DOCUMENT ME!

setArchitecture(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setArea(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the value of the surface area of the ModelTriangleMesh objects.

setARGB(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an ARGB value at the position currently referenced by this Pixel.

setARGB_fromDouble(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an ARGB value at the position currently referenced by this Pixel.

setARGB_fromDouble(double, double, double, double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the alpha, red, green and blue value of this pixel.

setArguments(int, int, int, double, double, double, double, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency

% Arguments: % Default values Description % % nscale 4 - Number of wavelet scales, try values 3-6 % norient 6 - Number of filter orientations

setArrayName(String) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setArrythmiaRejectionRatio(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAsciiText(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets ascii text fields of header extension

setASliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the arbitray clip slider and the labels. state given by flag.

setASM(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if asm operator is calculated.

setASM(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if asm operator is calculated.

setAttenuation(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

Set the coefficients for inverse quadratic attenuation, attenuation = 1/(a0+a1*d+a2*d^2) where d is the distance from the light's position to the vertex.

setAttenuationCorrection(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setAuthor(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setAuthor(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setAutoCenterFrequency(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAutoContrast(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setAutoFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the auto threshold flag.

setAutoFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the auto threshold flag.

setAutoManualPrescan(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAutoStartCBREngine(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set autoStartCBREngine.

setAutoThreshold(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the autoThreshold value

setAuxdata(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

setAuxFile(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supplies auxiliary-file string; permits no more than 24 characters.

setAuxFile(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

supplies auxiliary-file string; permits no more than 24 characters.

setAuxFile(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supplies auxiliary-file string; permits no more than 24 characters.

setAuxFile(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supplies auxiliary-file string; permits no more than 24 characters.

setAverageMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Accessor that sets the average mode.

setAverageSAR(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAveragesNumber(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setAveragingNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Accessor that sets the number of slice that will be averaged together.

setAVICompression(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the AVI compression.

setAVIWrite(ModelImage, int, int, int) - Method in class gov.nih.mipav.model.file.FileAvi

This method sets up for an AVI image write.

setAxioCamAnalogGainEnable(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamBlackReference(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamColorModel(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamDelayTime(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamEnhanceColor(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamMicroScanning(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamNIRMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamResolution(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamSaturation(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamSelector(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamShutterControl(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamShutterSignal(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxioCamType(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setAxis(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Set the axis toward which the face points.

setAxis(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Change an axis of the oriented bounding box of the 3D image.

setAxis(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Change an axis of the oriented bounding box of the 3D image.

setAxisOrientation(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets orientation of each axis.

setAxisOrientation(int[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets (copies) orientation of each axis.

setAxisOrientation(int[]) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets orientation of each axis.

setAxisOrientation(int[]) - Method in class gov.nih.mipav.model.file.FileInfoSPM

Sets orientation of each axis.

setAxisOrientation(int[]) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the orientations of the 3 axes.

setAxisOrientation(int, int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the image orientation in the specified axis.

setAxisOrientation(int, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the image orientation in the specified axis.

setAzimuth(float[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets azimuthal angle array for spherical direction

setb(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge

setB() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setB(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Accessor that sets b.

setB(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets blue channel value of this Pixel.

SetB(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

SetB(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setB_fromDouble(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

setB_fromDouble(double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the blue value of this pixel at its current position with 0.0 as no blue contribution and 1.0 as full blue contribution.

setB0toT2Matrix(TransMatrix, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

Sets the B0 to T2 matrix.

setB1() - Method in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream

setB1() - Method in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream

setBack(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the back value.

setBack(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the back value.

setBackArrowEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A convenience method to set the to-list-A buttons (both selected and all) to the given enabled status.

setBackArrowEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A convenience method to set the to-tree-A buttons (both selected and all) to the given enabled status.

setBackArrowVisble(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A convenience method to set the to-list-A buttons (both selected and all) to the given visible status.

setBackArrowVisble(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A convenience method to set the to-tree-A buttons (both selected and all) to the given visible status.

setBackface(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Turn backface culling on/off for the selected surfaces.

setBackface(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Turns BackFace Culling on/off for the selected surfaces.

setBackface(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Enables backface culling for the given surface.

setBackface(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turn backface culling on/off for the given surface.

SetBackface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Set back-face culling on/off.

setBackground(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the background color of the text, per default this is transparent black (0x00000000) which wont be visible.

setBackground(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the background color of the text, per default this is transparent black (0x00000000) which wont be visible.

setBackground(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect

setBackground1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setBackground2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setBackgroundColor(Color) - Method in class gov.nih.mipav.model.structures.VOIText

Sets background color

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Sets the background color for the frame and rendered image.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Sets the color of the background.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the background color for the rendered image.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Sets the background color for the frame and rendered image.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the background color for the frame and rendered image.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the background color.

setBackgroundColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets the background color to paint.

setBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Sets the background color for the frame and rendered image.

setBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Sets the background color for the frame and rendered image.

setBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the background color.

SetBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox

Sets the background color.

SetBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets the background color.

SetBackgroundColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Sets the background color.

setBands(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef

Set the bands for the AAM model.

setBandSpacing(int[]) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setBandSpacingCounter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setBaseImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Accessor to set the baseImage.

setBaseNameforReconstructedSlices(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set baseNameforReconstructedSlices.

setBeginSlice(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the slice to begin writing at (3D).

setBeginTime(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the time slice to begin writing at (4D).

setBestWeight(double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection

setBeta(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake

setBeta(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

setBeta(float) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setBeta(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets T10, T11, and T12 in the transformation matrix.

setBetaArray(Vector3f[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of T10, T11, and T12 in the transformation matrix.

setBetaHalflife(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setBETParameters(boolean, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Changes the BET algorithm parameters from their defaults (which we choose).

setBGImageShowing(boolean) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

setBigendian(boolean) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setBigEndian(boolean) - Method in class gov.nih.mipav.model.file.FileBase

sets big endian

setBigEndian(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO

Marks the checkmark when true.

SetBillboardPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

setBin1(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setBin1(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setBin1(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets bin1.

setBin1(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Accessor that sets bin1.

setBin1Default(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

DOCUMENT ME!

setBin2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setBin2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setBin2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets bin2.

setBin2Default(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

DOCUMENT ME!

setBinExternal(String, String, Integer, URI) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data

DOCUMENT ME!

setBinExternal(String, String, Integer, URI) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF

DOCUMENT ME!

setBinImage(AlgorithmEmbeddedConfidenceEdgeDetection.BgImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList

setBinning(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

setBinNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

setBitDepth(short) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setBitPix(short) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets bitpix; any value other than 1, 8, 16, 32, 64, or 24 gets set to the dissalowed trap value, -1.

setBitPix(short) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets bitpix; any value other than 1, 8, 16, 32, 64, 128, or 24 gets set to the dissalowed trap value, -1.

setBitPix(short) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets bitpix; any value other than 1, 8, 16, 32, 64, or 24 gets set to the dissalowed trap value, -1.

setBitPix(short) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets bitpix; any value other than 1, 8, 16, 32, 64, or 24 gets set to the dissalowed trap value, -1.

setBitsAllocated(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setBitsAllocated(int) - Method in class gov.nih.mipav.model.file.FileRaw

setBitsAllocated(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

setBitSetMask(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Sets this classes BitSet mask to new mask.

setBitsPerPixel(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setBitsPerSample(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setBitsPerSample(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setBitsStored(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setBitsStored(int) - Method in class gov.nih.mipav.model.file.FileRaw

setBitsStored(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

setBlackEnd(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

setBlackValue0(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setBlackValue1(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setBlackValue2(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setBlackValue3(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setBleachedROIShape(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Sets the transparency.

setBlendSliderValue(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Get the blender slider value

setBlendValue(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the blend value between images A and B.

setBlockSide(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

setBlockSize(int) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur

Sets the flag for the blue channel.

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep

Sets the flag for the blue channel.

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude

Sets the flag for the blue channel.

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

Sets the flag for the blue channel.

setBlue(boolean) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

Sets the flag for the blue channel.

setBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

setBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Accessor that sets the color flag.

setBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the color flag.

setBlue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the blue value.

setBlue(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setBlue1(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setBlue2(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setBlueArray(int[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setBlueBlackLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setBlueChannelNumber(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setBlueFunction(TransferFunction) - Method in class gov.nih.mipav.model.structures.ModelRGB

Accessor that returns the blue transfer function.

setBlueGamma(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setBlueImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

Accessor that sets the Blue Image Source.

setBlueImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets the Blue Image Source.

setBlueOn(boolean) - Method in class gov.nih.mipav.view.JPanelHistogram

Sets the blue checkbox on/off.

setBlueOn(boolean, boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets the blue flag to be on or off.

setBlueOn(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

setBlueProcessingRequested(boolean) - Method in class gov.nih.mipav.view.components.JPanelColorChannels

Changes whether the blue channel of the input image should be processed.

setBlueValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

setBlueVector(long) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

setBlueWhiteLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setBlur() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Called when the Blur Face button is pressed. the algorithm computes the blurred face and sets the displayed image to be the blurred region.

setBlur(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Sets the blur factor in number of voxels.

setBlurFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the blurring flag (if the surface is generated from a VOI or mask the surface image will need to be blurred by the Extraction algo before the surface mesh is extracted.

setBlurFlag(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Blur the resulting image or not.

setBlurFlag(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

Blur the result ray traced image or not.

setBlurFlag(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Blur the result ray traced image or not.

setBlurringDiameter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the blurring diameter value.

setBlurringFreq(float) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the blurring frequency value.

setBlurValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the blurring amount.

setbMatrixVals(double[][]) - Method in class gov.nih.mipav.model.file.DTIParameters

setBmtxtPath(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

setBodyPart(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the subject's body part.

setBOn(boolean) - Method in class gov.nih.mipav.model.structures.ModelRGB

Sets if the blue channel to the boolean value.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a boolean value for the specified tag.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the data in float format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in float format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the data in float format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the data in int format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the long in byte format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the data in byte format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the data in float format.

setBoolean(int, boolean) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the data in float format.

setBooleanProperty(Properties, String, boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix

setBorder(String) - Method in class gov.nih.mipav.view.JPanelChecklist

DOCUMENT ME!

setBorderCol(Color) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets color of the border surrounding each z slice in 4D images.

setBorderColor(Color) - Method in class gov.nih.mipav.view.BorderedButton

DOCUMENT ME!

setBorderColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the color of the image borders.

setBorderColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the color of the image borders.

setBorderName(String) - Method in class gov.nih.mipav.view.components.JPanelSigmas

Set the name of the titled border

setBorderOn(boolean) - Method in class gov.nih.mipav.view.BorderedButton

DOCUMENT ME!

setBorderSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Accessor that sets the borderSize.

setBorderSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the image border size.

setBorderSize(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the image border size.

setBottom(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the bottom side value.

setBottom(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the bottom side value.

SetBottom(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

setBottomPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setBottomPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setBotX(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the bottom x bounding box boundaries in Talairach conversion.

setBotY(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the bottom y bounding box boundaries in Talairach conversion.

setBotZ(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the bottom z bounding box boundaries in Talairach conversion.

setboundary(boolean) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setBoundary(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Sets the contribution of the 2nd derivative on the volume rendering for this widget.

setBoundary(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the contribution of the 2nd derivative to the volume rendering.

setBoundary(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the contribution of the 2nd derivative on the volume rendering for this widget.

SetBoundaryMCRootPositions(int, float, HashMap<Long, Integer>, HashMap<Long, Pair<Float, Point3D>>, CoredMeshData, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

SetBoundaryStrips() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

setBoundingBox(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setBoundingBoxColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the color for the input slice frame.

setBoundingBoxColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setBoundingBoxColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the volume bounding box color.

setBoundingBoxColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Called from JPanelDisplay.

SetBoundingBoxColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Sets the bounding box color for the given plane.

SetBoundingBoxColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox

Called from JPanelDisplay.

setBoundingBoxFlag(boolean) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the flag to the parameter.

setBoxColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Sets the color of the box frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Calls the appropriate method in the parent frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Calls the appropriate method in the parent frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Calls the appropriate method in the parent frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Calls the appropriate method in the parent frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Calls the appropriate method in the parent frame.

setBoxColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Calls the appropriate method in the parent frame.

setBracketBound(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set bracketBound.

setBrainSelection(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the brain selection term, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.

setBranch(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Make the specified branch be the current state for following.

setBranch(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Make the specified branch be the current state for following.

setBranch(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setBranch(FlyPathBehavior.BranchState) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Make the specified branch be the current state for following.

setBranch(FlyPathBehavior_WM.BranchState) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Make the specified branch be the current state for following.

setBranch(NavigationBehavior.BranchState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setBranch(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Make the specified branch be the current state for following.

setBranch(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Make the specified branch be the current state for following.

setBranch(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the BranchGroup in the scene graph that renders the surface.

setBranchInfo(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the current branch and path direction (forward or reverse) for moving along the length of the path.

setBranchInfo(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the current branch and path direction (forward or reverse) for moving along the length of the path.

setBranchingFactor(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setBrickLabsString(String[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

setBrickStatAux(float[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets brickStatAux The BRICK_STATAUX attribute allows you to attach statistical distribution information to arbitrary sub-bricks of a bucket dataset.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Method to set the brightness and contrast of the animate images.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Method to set the brightness and contrast of the animate images.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Method to set the brightness and contrast of the animate images.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets the brightness and contrast of the component image.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Sets the brightness and contrast of the component image.

setBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Sets the brightness and contrast of the component image.

setBrightnessContrast(int, float) - Method in class gov.nih.mipav.model.file.FileImageXML.Thumbnail

Sets the brightness and contrast levels for the image.

setBrowseForFiles(boolean) - Method in class gov.nih.mipav.view.JPanelFileSelection

determines how the file chooser will search.

setBrowserFileFilter(FileFilter) - Method in class gov.nih.mipav.view.JPanelFileSelection

sets the file filter for the file chooser.

setBrowserTitle(String) - Method in class gov.nih.mipav.view.JPanelFileSelection

Sets the file chooser title independantly of the panel title.

setBruteForce(boolean, float, float, float, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setBruteForce.

setBruteForce(boolean, float, float, float, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setBruteForce.

setBt(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the brightness threshold.

setBufferFloat(byte[], float, int, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Sets byte buffer with int.

setBufferFloat(byte[], float, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets byte buffer with int.

setBufferInt(byte[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Sets byte buffer with int.

setBufferInt(byte[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets byte buffer with int.

setBufferLong(byte[], long, int, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Sets byte buffer with long.

setBufferLong(byte[], long, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets byte buffer with long.

setBuffers(float[], float[]) - Method in class gov.nih.mipav.view.PatientSlice

The frame in which the image(s) is displayed, allocates the memory and uses this method to pass the references to the buffers.

setBuffers(float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets the buffers for the actual data, the displayable image, and the paint.

setBuffers(float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets the buffers for the actual data, the displayable image, and the paint.

setBuffers(float[], float[], int[], int[]) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

The frame in which the image(s) is displayed, allocates the memory and uses this method to pass the references to the buffers.

setBuffers(float[], float[], int[], int[]) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

The frame in which the image(s) is displayed, allocates the memory and uses this method to pass the references to the buffers.

setBufferShort(byte[], short, int, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Sets byte buffer with int.

setBufferShort(byte[], short, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets byte buffer with int.

setBufferString(byte[], String, int) - Method in class gov.nih.mipav.model.file.FileBase

Sets byte buffer with int.

setBufferString(byte[], String, int) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets byte buffer with int.

setBUNIT(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setButterworthOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets the butterworth order.

setButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

When user change the window, level values, setButton sets the min, max of the window values.

setButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

When user change the window, level values, setButton sets the min, max of the window values.

setButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

When user change the window, level values, setButton sets the min, max of the window values.

setButton(JButton) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

sets the button that will have its name updated when OK is clicked.

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

Set the color of the button.

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

setButtonColor(JButton, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Set the color of the button.

setButtonFeatures(JButton, String, String) - Method in class gov.nih.mipav.view.JPanelListController

adds the tooltip, and the action label to the buttoin, as well as setting the action listener, font, borderpaint, and the enable.

setButtonFeatures(JButton, String, String) - Method in class gov.nih.mipav.view.JPanelTreeController

adds the tooltip, and the action label to the buttoin, as well as setting the action treeener, font, borderpaint, and the enable.

setButtonProps(JButton, String) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Sets the button properties for all the arrow buttons.

setButtonProps(JButton, String) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Sets the button properties for all the arrow buttons.

setButtonProps(JButton, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Sets the button properties for all the arrow buttons.

setButtonStatus() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Method to set the status of the delete and extract menuItems and Buttons based on the selectedImages vector.

setButtonStatus() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Method to set the status of the delete and extract menuItems and Buttons based on the selectedImages vector.

setBValue(float[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets floating point array with diffusion-weighting b-values in units of s/mm-squared.

setbValues(double[]) - Method in class gov.nih.mipav.model.file.DTIParameters

setBValuesPerDirection(int[]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setByArea(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost

setByContour(boolean) - Method in class gov.nih.mipav.view.JPanelStatisticsList

setBySliceEnabled(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions

Method to set the selected value for slice-only calculation.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferByte

sSets the value in byte format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the byte data in double format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the data in float format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the byte value in unsigned short format.

setByte(int, byte) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the byte value in unsigned short format.

setByteArray(int, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a byte[] (array) for the specified tag.

setByteArray(int, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setByteArray(int, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

setByteArray(int, byte[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setBytesPerPixel(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setBz2zip(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

setC(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

C is the cost of constraints violation.

setC(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Accessor that sets c.

setC(int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

color version of setC that does NOT perform bounds checking.

setC(int, int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast color version of set that does NOT perform bounds checking.

setC(int, int, int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D fast color version of set that does NOT perform bounds checking.

setC(int, int, int, int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

3D color set data fuction where bounds checking is performed.

setC(int, int, Number) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the entire buffer to value passed to this method.

setc_s(LSCM.HalfEdge, LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM

setC1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

setC2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

Accessor that sets c2.

setC3(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

setCalcCOG(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the whether or not to calculate the center of gravity (mass).

setCalcCOG(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the whether or not to calculate the center of gravity (mass).

setCalibrationDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalibrationDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalibrationDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalibrationTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalibrationTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalibrationTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCalledAppTitle(byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Sets the called application entity title.

setCallingAppTitle(byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Sets the calling application entity title.

setCalMax(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets cal-max. if supplied value is less than cal-min, the cal-min gets reset to the supplied value as well, so that cal-min is still no greater than cal-max.

setCalMax(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

sets cal-max. if supplied value is less than cal-min, the cal-min gets reset to the supplied value as well, so that cal-min is still no greater than cal-max.

setCalMax(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

sets cal-max. if supplied value is less than cal-min, the cal-min gets reset to the supplied value as well, so that cal-min is still no greater than cal-max.

setCalMax(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets cal-max. if supplied value is less than cal-min, the cal-min gets reset to the supplied value as well, so that cal-min is still no greater than cal-max.

setCalMin(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets cal-min. if supplied value is greater than cal-max, the cal-max gets reset to the supplied value as well, so that cal-max is still no less than cal-min.

setCalMin(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets cal-min. if supplied value is greater than cal-max, the cal-max gets reset to the supplied value as well, so that cal-max is still no less than cal-min.

setCalMin(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets cal-min. if supplied value is greater than cal-max, the cal-max gets reset to the supplied value as well, so that cal-max is still no less than cal-min.

setCalMin(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets cal-min. if supplied value is greater than cal-max, the cal-max gets reset to the supplied value as well, so that cal-max is still no less than cal-min.

setCalUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows no more than 8 characters for the string describing the cal units.

setCalUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows no more than 8 characters for the string describing the cal units.

setCamera(String) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setCamera(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCamera(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

When the mouse move in bottom three planar view, need to update the camera view location to the indicated image center.

setCameraAdapterMagnification(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraBinning(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraBitDepth(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Update the camera in 3D view window.

setCameraFrameHeight(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFrameImageOrientation(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFramePixelDistance(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFrameScalingFactor(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFrameStartLeft(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFrameStartTop(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraFrameWidth(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraImageAcquisitionTime0(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraImageAcquisitionTime1(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraImageAcquisitionTime2(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraImageAcquisitionTime3(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraLiveScalingFactor(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraLocation(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the camera location.

setCameraMake(String) - Method in class gov.nih.mipav.model.file.FileInfoBase

setCameraModel(String) - Method in class gov.nih.mipav.model.file.FileInfoBase

setCameraNearPlane(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setCameraNearPlane(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setCameraParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Display the camera parameters in the user-interface.

setCameraShadingCorrection(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraShutterLiveEnable(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCameraViewRotationDegree(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Set camera view rotation degree

setCamerViewRotationDegree(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setCancel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Called when the dialog Cancel button is pressed. this sets up the Algorithm state to revert to the original copy of the image and to tell the dialog to cleanup and delete this algorithm.

setCancelled(boolean) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

Turns the cancelled flag on or off.

setCanvas(Component) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setCapacity(int) - Method in class gov.nih.mipav.model.structures.IntVector

Sets the capacity of the array.

setCaptureTime(float) - Method in class gov.nih.mipav.model.file.FileAvi

setCaptureVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setCardiacFrequency(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setCardiacHeartRate(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCardiacPhaseNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setCardiacPhaseNumber(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCardiacRepTime(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCaret(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets caret array for extension header

setCATFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set CATFileName.

setCBRHostName(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set CBRHostName.

setCBRImageDirectory(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set CBRImageDirectory.

setCBRProjectionDirectory(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set CBRProjectionDirectory.

setCc(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setCellData(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

setCenter - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

setCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

setCenter(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the center point used in transformations.

setCenter(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

setCenter(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

setCenter(int, int, int) - Method in class gov.nih.mipav.view.PatientSlice

DOCUMENT ME!

setCenter(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets the three slider positions, based on the position of the three orthogonal planes: AXIAL, CORONAL, and SAGITTAL.

setCenter(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

setCenter sets the PatientSlice center:

setCenter(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sets the three slider positions, based on the position of the three orthogonal planes: AXIAL, CORONAL, and SAGITTAL.

setCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

setCenter, sets the crosshairPt and the local copies of the volumePosition (in FileCoordinates and PatientCoordinates).

setCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sets the crosshair positions and slices for each of the triImages.

setCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

sets the crosshair positions and slices for each of the triImages.

setCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

sets the crosshair positions and slices for each of the triImages.

setCenter(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sets the crosshair positions and slices for each of the triImages.

setCenter(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

sets the crosshair positions and slices for each of the triImages.

setCenter(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

sets the crosshair positions and slices for each of the triImages.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the values for JPanelSlices, based on the positions in the PlaneRender class for the AXIAL, CORONAL, and SAGITTAL views.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the values for JPanelSlices, based on the positions in the PlaneRender class for the AXIAL, CORONAL, and SAGITTAL views.

setCenter(Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

setCenter sets the cursor and slice position for this PlaneRender object, based on the 3D location of the three intersecting ModelImage planes.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

setCenter sets the cursor and slice position for this PlaneRenderWM object, based on the 3D location of the three intersecting ModelImage planes.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

setCenter sets the cursor and slice position for this PlaneRenderWM object, based on the 3D location of the three intersecting ModelImage planes.

setCenter(Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Sets the currently displayed image slice.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setCenter(Vector3f) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the position of the 3D slices.

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameImage

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setCenter(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setCenter(Vector3f) - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Deprecated.

setCenter(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setCenter(Vector3f, boolean) - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Sets the current displayed slice for 3D images.

SetCenter(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the Center of the widget for the GLSL program.

SetCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Sets the positions of the three orthogonal planes.

setCenterCenter(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setCenterCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

setCenterOfRotation(double[]) - Method in class gov.nih.mipav.model.file.FileInfoMetaImage

setCenterPointX(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCenterPointY(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCenterPointZ(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setCenterPtLocation(int) - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration

Sets the center point of rotation to this location.

setCentroids(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

Accessor to set the centroids.

setCentroids(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

setCentroids(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the centroids.

setCentroids(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the centroids.

setcFFp(int, Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setChanged() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

setChanged() - Method in interface gov.nih.mipav.model.util.Observable

Marks this object as having been changed.

setChangedValues(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setChannel0(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannel1(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannel2(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannel3(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannelArray(String[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setChannelDataTypes(int[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setChannelDescription(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setChannelID(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setChannelName(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setChannelName0(int, String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannelName1(int, String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannelName2(int, String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannelName3(int, String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setChannelNames(String[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setChannels(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setChannels(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setChannels(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setChannelsFound(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setChannelWeight(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setCheckboardButtonEnabled(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that enables or disables the checkerboard button.

setCheckbox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

setCheckBox(JCheckBox) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter

DOCUMENT ME!

setCheckBoxA(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider arbitrary checkBox with the passed in value.

setCheckboxBoundingBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

setCheckBoxesDisabled() - Method in class gov.nih.mipav.view.JPanelStatisticsList

DOCUMENT ME!

setCheckBoxesEnabled() - Method in class gov.nih.mipav.view.JPanelChecklist

Set the checkboxes to be clickable.

setCheckBoxesEnabled() - Method in class gov.nih.mipav.view.JPanelStatisticsList

sets the enabled status of the checkboxes, after first finding the visible ones (ie., setting the visible status of them), by using the super-class' implementation of setCheckBoxesEnabled.

setCheckBoxesEnabled(int, boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Set the checkboxes to be clickable.

setCheckBoxesEnabled(String, boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Set the checkboxes to be clickable.

setCheckBoxStatic(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Static checkBox with the passed in value.

setCheckBoxStaticInv(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Static inverse checkBox with the passed in value.

setCheckBoxX(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider X checkBox with the passed in value.

setCheckBoxXInv(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider X inverse checkBox with the passed in value.

setCheckBoxY(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Y checkBox with the passed in value.

setCheckBoxYInv(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Y inverse checkBox with the passed in value.

setCheckBoxZ(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Z checkBox with the passed in value.

setCheckBoxZInv(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Set the slider Z inverse checkBox with the passed in value.

setCheckChildren(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

tells the anonymizer to check and anonymize the child directories of the selected source directories.

setCheckerboard(int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the image to display in "Checkerboard" mode with the given numbers of rows and columns.

setCheckerboardAnimate(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setCheckerboardApplied(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setCheckListRemove(boolean[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Accessor that sets the which slices to remove according to the boolean array paramater.

setCheckListRemove(boolean[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

Accessor that sets the which slices to remove according to the boolean array paramater.

setCheckListRemove(Vector<String>) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Accessor that sets the which slices to remove according to the vector of strings.

setCheckListRemoveEven() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Sets up so that only even slices will be removed.

setCheckListRemoveOdd() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Sets up so that only odd slices will be removed.

setChildProcess(boolean) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW

Set isChildProcess variable.

setChildProcess(boolean) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor

Set isChildProcess variable.

setChoiceBox - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

DOCUMENT ME!

setChoiceButton - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

DOCUMENT ME!

setChooserFromTag(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

Sets the value for one of the choosers based on a dicom tag and value.

setChunk(int) - Method in class gov.nih.mipav.model.structures.IntVector

Sets the chunk size when adding memory to the array.

setCity(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setClampFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the clamp flag.

setClampFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the clamp flag.

setClampingValue(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the clamping value.

setClampingValue(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the clamping value.

setClassicStepSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setClassNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Accessor that sets the class number.

setClassWeights(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

setClassWeights(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

setClearInflectionPoints(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

setClickCountToStart(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor

setClip(Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

Enable and set the axis-aligned clip plane.

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets axis-aligned clipping for the VolumeShaderEffect.

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets axis-aligned clipping for the VolumeShaderEffect.

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Sets axis-aligned clipping for the VolumeShaderEffect.

SetClip(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

SetClipArb(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

Enable and set the arbitrary clip plane.

SetClipArb(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets arbitrary clipping for the VolumeShaderEffect.

SetClipArb(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClipArb(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets arbitrary clipping for the VolumeShaderEffect.

SetClipArb(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

SetClipArb(float[], float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

SetClipArbInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

Enable and set the arbitrary clip plane.

SetClipArbInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets arbitrary clipping for the VolumeShaderEffect.

SetClipArbInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets arbitrary clipping for the VolumeShaderEffect.

setClipColor(int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setClipColors(Color[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setClipDisplayed(boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setClipEnabled(boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

Enable and set the eye clip plane.

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets eye clipping for the VolumeShaderEffect.

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets eye clipping for the VolumeShaderEffect.

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

SetClipEye(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setClipEyeArb(Vector4f, Vector4f, Vector4f, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

Enable and set the inverse-eye clip plane.

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets inverse-eye clipping for the VolumeShaderEffect.

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets inverse-eye clipping for the VolumeShaderEffect.

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

SetClipEyeInv(float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setClipFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the clip flag.

setClipLevel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE

the Clip Level is a percentage of the maximum number of pixels in any particular brightness level.

setClipLevel(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

The Clip Level is a percentage of the maximum number of pixels in any particular brightness level.

setClipMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

set clip mode.

setClipMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets the clip mode.

setClipMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Accessor that sets the clip mode.

setClipMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Accessor that sets the clip mode.

SetClipOBB(Vector3f, Vector3f, Vector3f[], float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

SetClipOBB(Vector3f, Vector3f, Vector3f[], float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

SetClipOBB(Vector3f, Vector3f, Vector3f[], float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClipOBB(Vector3f, Vector3f, Vector3f[], float[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setClippedMatrix(TransMatrix) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the clipped matrix for copy/paste actions.

setClipping(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Turns Clipping on/off for the selected surfaces.

setClipping(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Turns Clipping on/off for the selected surfaces.

setClipping(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Enable clipping for the given surface.

setClipping(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enable clipping for the given surface.

SetClipping(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Enables/disables surface clipping for the per-pixel shader.

SetClipping(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Enables/disables surface clipping for the per-pixel shader.

setClipPlane(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Sets the axis-aligned clip plane clipping position.

setClipPlane(int, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Called from JPanelClip.

setClipPlaneColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Sets the axis-aligned clip plane color.

setClipPlaneColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the axis-aligned clip plane color.

setClipSliceAColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the arbitrary clipping plane slice frame.

setClipSliceAwithRotate(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

During mouse recorder diaplay, setup the rotatino axis for both arbiTG and mcArbiTG.

setClipSliceSColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the static clipping plane slice frame.

setClipSliceSInvColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the static inverse clipping plane slice frame.

setClipSliceXColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the x clipping plane slice frame.

setClipSliceXInvColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the -x clipping plane slice frame.

setClipSliceYColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the y cliping plane slice frame.

setClipSliceYInvColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the -y cliping plane slice frame.

setClipSliceZColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the z clipping plane slice frame.

setClipSliceZInvColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the color of the -z clipping plane slice frame.

SetClipSphere(Vector3f, Vector3f, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

SetClipSphere(Vector3f, Vector3f, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

SetClipSphere(Vector3f, Vector3f, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetClipSphere(Vector3f, Vector3f, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setClipValues() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI

Sets clipMin and clipMax.

setClipValues() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

Sets the minimum and maximum clipping values.

setClipValues() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

Sets clipMin and clipMax.

setClipValues(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setClonedImageName(String) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that sets the name of the image without registering the image.

setClosed(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets this contour as open or closed.

SetClosed() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Set the point to closed point.

SetClosed(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Sets whether the point belongs to a closed or opened path.

SetClosedPathConnectivity() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Sets all point to be connected in one closed path.

setClosestChoiceBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Loop through all of the possible branch choices and select the one that is the closest to the current view direction vector.

setClosestChoiceBranch() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Loop through all of the possible branch choices and select the one that is the closest to the current view direction vector.

setCmdlines(String[]) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setCNum(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets the number of terms.

setCO2Percent(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setCoarseBegin(float) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the coarse sample begin.

setCoarseBegin(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the coarse sample begin.

setCoarseBegin(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the coarse sample begin.

setCoarseBegin(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the coarse sample begin.

setCoarseBeginX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample beginX.

setCoarseBeginX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample beginX.

setCoarseBeginY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample beginY.

setCoarseBeginY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample beginY.

setCoarseBeginZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample beginZ.

setCoarseBeginZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample beginZ.

setCoarseEnd(float) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the coarse sample end.

setCoarseEnd(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the coarse sample end.

setCoarseEnd(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the coarse sample end.

setCoarseEnd(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the coarse sample end.

setCoarseEndX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample endX.

setCoarseEndX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample endX.

setCoarseEndY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample endY.

setCoarseEndY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample endY.

setCoarseEndZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample endZ.

setCoarseEndZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample endZ.

setCoarsenessThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets coarseness threshold

setCoarseRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the coarse sample rate.

setCoarseRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the coarse sample rate.

setCoarseRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the coarse sample rate.

setCoarseRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the coarse sample rate.

setCoarseRateX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample rateX.

setCoarseRateY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample rateY.

setCoarseRateZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the coarse sample rateZ.

setCoeff(int, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f

DOCUMENT ME!

setCoilName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCoilType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCollapseImage(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setColocalizationEMFrame(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

if true parentFrame is a ViewJFrameColocalizationEM.

setColocalizationEMFrame(ViewJFrameColocalizationEM) - Method in class gov.nih.mipav.view.JFrameHistogram

Called from ViewJFrameColocalizationEM.

setColocalizationRegFrame(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

if true parentFrame is a ViewJFrameColocalizationRegression.

setColocalizationRegFrame(ViewJFrameColocalizationRegression) - Method in class gov.nih.mipav.view.JFrameHistogram

Called from ViewJFrameColocalizationRegression.

setColor(byte) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

setColor(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the color to the parameter.

setColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets this point's color

setColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color of the segment (start and end point)

setColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the color of this text in integer packed ARGB format.

setColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of the triangle (all vertices)

setColor(int) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setColor - sets the color of the line on the graph.

setColor(int, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM

setColor(int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelLUT

Sets a specific index of the LUT with the given color and updates the compressed LUT.

setColor(int, Color) - Method in class gov.nih.mipav.model.structures.ModelLUT

Sets a specific index of the LUT with the given color.

setColor(int, Color) - Method in class gov.nih.mipav.model.structures.ModelRGB

Sets a specific index of the RGB table with the given color.

setColor(int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

setColor(int, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sets the color and stores the color update information in a local copy.

setColor(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets this point's color

setColor(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color of the segment (start and end point)

setColor(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the color of this text

setColor(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color the triangle (all vertices)

setColor(Color) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the color to the parameter.

setColor(Color) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the color of the font.

setColor(Color) - Method in class gov.nih.mipav.view.ColorIcon

setColor - sets the color of the icon.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the base color for the light.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

When the surface panel change the surface color, endoscopy view changes the color accordingly.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxFrame

Sets color of frame.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

Sets color of slice.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

This is called when the user chooses a new color for the fiber bundle.

setColor(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setColor - sets the color of the line on the graph.

setColor(String) - Method in class gov.nih.mipav.view.ShortCutted

DOCUMENT ME!

setColor(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setColor(String, ColorRGB, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the color for the given surface.

setColor(String, ColorRGB, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setColor(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets this point's color

setColor(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color of the segment (start and end point)

setColor(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of the triangle (all vertices)

setColor(Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the surface color.

setColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect

setColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Sets the color of the color transfer function for this widget.

setColor(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the color of the color transfer function for this widget.

SetColor(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the color of the widget color transfer function.

SetColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect

SetColor(ColorRGB, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Set the object color.

SetColor(ColorRGB, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

SetColor(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect

setColor0(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the starting point of the segment

setColor0(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 0

setColor0(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the starting point of the segment

setColor0(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 0

setColor0(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the starting point of the segment

setColor0(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color for vertex 0

setColor1(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the starting point of the segment

setColor1(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 1

setColor1(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the end point of the segment

setColor1(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 1

setColor1(Color) - Method in class gov.nih.mipav.view.AlternatingTableCellRenderer

This method sets the first alternating background color.

setColor1(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the color at the end point of the segment

setColor1(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color for vertex 1

setColor2(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 2

setColor2(Color) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color of vertex 2

setColor2(Color) - Method in class gov.nih.mipav.view.AlternatingTableCellRenderer

This method sets the second alternating background color.

setColor2(IntSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the color for vertex 2

setColorButton(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Set the color for the color button.

setColorButton(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

DOCUMENT ME!

setColorChannels(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

setColorChannels(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

setColorChannels(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver

Sets what color channels to convolve and tells the convolver that it is working on a color image.

setColorDelay(int, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Used for fast color update while painting the triangle mesh, stores the color update information for later loading into the surface.

setColorFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets if all colors are component filtered, vector magnitude filtered, vector direction filtered, or adaptive truncated vector median filtered.

SetColorImage(Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets the IsColor shader parameter values.

SetColorImage(Program) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Sets the IsColor shader parameter values.

setColorization(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setColorOptionsGUI(JPanelColorChannels) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Sets the color channel GUI panel, based on the script action's parameters.

setColors(float, float, float[], int, Color4f[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

DOCUMENT ME!

setColorScheme(ContourPlot.ColorScheme) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

setColorsLUT() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Update the colormap based on the LUT:

setColorsLUT() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Update the colormap based on the LUT:

setColorTable(Color[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

setColorUpdate() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Used for fast color update while painting.

setColorWeighting(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setColourCoefficients(double, double, double) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream

setColourCoefficients(double, double, double) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream

SetColumn(int, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

setColumnClass(Class<?>, int) - Method in class gov.nih.mipav.model.structures.SortingTableModel

DOCUMENT ME!

setColumnComparator(Class, Comparator) - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

setColumnName(int, Object) - Method in class gov.nih.mipav.view.ViewTableModel

Sets the column name to the new name and fires the table event.

setColumns() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the columns of the query table to certain values.

setColumns(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setColumns(int) - Method in class gov.nih.mipav.view.JPanelEditDefault

setColumns(int) - Method in class gov.nih.mipav.view.JPanelEditSetOrParam

setColumnVectorX(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setColumnVectorY(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setColumnVectorZ(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setColumnWidths() - Method in class gov.nih.mipav.view.ViewOpenImageSequence

This method calculates the width needed to encompass the table data for each column.

setComboBox(JComboBox) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Sets combo box choices that match resolution units listed in FileInfoBase and in the same order.

setComboBox(JComboBox) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Sets combo box choices that match resolution units listed in FileInfoBase and in the same order.

setComboBox(JComboBox) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO

Sets combo box choices that match resolution units listed in FileInfoBase in the same order.

setComment(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setComments(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setComments(String) - Method in class gov.nih.mipav.model.structures.VOI

setComments(String) - Method in class gov.nih.mipav.model.structures.VOIText

setCommentStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

setCommonMapping(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

setCommonMapping(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

setCompareType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator

DOCUMENT ME!

setComplete(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Accessor to tell the glass pane that the rectangle drawing is complete.

setComplete(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Sets the flag to indicate whether the algorithm completed successfully.

setCompleted(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets completed to flag indicating if algorithm has sucessfully completed.

setComplex(int, int, int, int, float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

setComplexInverse(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

setComponent(Component) - Method in class gov.nih.mipav.view.Rubberband

Sets the component to the parameter.

setComponentOrientation(ComponentOrientation) - Method in class gov.nih.mipav.view.JScrollMenu

setComponentsEnabled(Container, boolean) - Static method in class gov.nih.mipav.view.MipavUtil

DOCUMENT ME!

setCompositeMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the texture renderer to render in composite mode.

setCompositeMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the texture renderer to render in composite mode.

setCompressed(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

sets the compressed variable.

setCompressed(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

sets the compressed variable.

setCompressed(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets the compressed variable.

setCompressionQuality(float) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setCompressionType(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the compression type.

setComputeMax(int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Turns computing the maximum projection on for X, Y, or Z processing.

setComputeMaximum(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setComputeMin(int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Turns computing the minimum projection on for X, Y, or Z processing.

setComputeMinimum(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setConcatenate(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if there is only 1 result image with the original source concatenated with the calculated features

setConcatenatedSATSelection(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCondenserContrast(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setCondenserContrast(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setCondenserNumericalAperture(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setConf(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

setConnectivity(Vector<Integer>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Set the default connectivity vector.

setConsecutiveNegativeNeeded(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

SetConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setContactEmail(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setContactExperimenterRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setContactFirstName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setContactInstitution(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setContactLastName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setContactPerson(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setContent(ContourPlot.Renderer) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the content renderer that will draw into the area of the coordinate system.

setContent(String) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting contentString giving textual description of information in the array

setContent(String, File) - Method in class gov.nih.mipav.view.dialogs.JDialogText

Attempts to read the given file, place its contents into the dialog's display area and format it using the specified MIME-type (or with PLAIN_FORMAT if it can not determine how to display the content).

setContent(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogText

Uses the input string as the text to display in the dialog's text area, formats it with the specified MIME-type (or with PLAIN_FORMAT if it can't determine the how to display the content).

setContentTime(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setContiguousSlices(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setContourGraph(ViewJFrameGraph) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the contourGraph to the parameter.

setContourStatistic(String, String, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

Stores the statistic for a particular contour of a VOI without reference to the slice a contour may exist on.

setContrast(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if the contrast operator is calculated.

setContrast(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if the contrast operator is calculated.

setContrast(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Accessor that sets the contrast.

setContrastAgent(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setContrastAmount(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setContrastBolusAgent(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusIngredient(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusIngredientConcentration(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusRoute(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusStartTime(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusTotalDose(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastBolusVolume(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setContrastLimited(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE

Redistribute from brightnesses with at a least a specified percentage of the brightness with the maximum number of pixels.

setContrastLimited(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

Redistribute from brightnesses with at a least a specified percentage of the brightness with the maximum number of pixels.

setContrastManagerMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setContrastMethod(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setContrastType(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setContrastUsed(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setContributor(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setControlPoint(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.BSplineLattice3Df

Set the position of the specified control point.

setControlPoint(int, int, Vector2f) - Method in class gov.nih.mipav.model.structures.BSplineLattice2Df

Set the position of the specified control point.

setControlPoints(int) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

setControls() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set controls

setControls() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set controls

setControls() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setControls() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setControls() - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setControls() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Placeholder.

setControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the menu and controls (i.e. toolbars) of the main frame!

setControls() - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the menu for the main frame.

setConversionProgram(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setConvert4Dto3D(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices

DOCUMENT ME!

setConvert4Dto3D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices

DOCUMENT ME!

setConvolve(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor method for the m_bConvolve data memeber.

setCooling(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setCoordCode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets type of xyz coordinates.

setCoordCode2(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets type of xyz coordinates 2.

setCoordinate(Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Set the default coordinate vector.

setCoordinateView(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the coordinate view.

setCoordinateView(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the coordinate view.

setCoordinateViewRect(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

setCopyColorText(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

If the progress bar is visible, sets the text to:
Copying all color values ...

setCopyColorText(String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

If the progress bar is visible, sets the text to:
Copying all color values ...

setCorrelation(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if gray level coordinate matrix correlation is calculated.

setCorrelation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if gray level coordinate matrix correlation is calculated.

setCorrelationRatioSmoothed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

setCost(double) - Method in class gov.nih.mipav.model.algorithms.Vectornd

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

DOCUMENT ME!

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setCost(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the choice of cost function.

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the choice of cost function.

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the choice of cost function.

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the choice of cost function.

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the choice of cost function.

setCostChoice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the choice of cost function.

setCostVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation

setCountry(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setCovariance(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Accessor that sets the Gaussian noise covariance.

setCPhase(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setCreateEfficiencyImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setCreateFDivAImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setCreateFDivDImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setCreateField(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the create field flag.

setCreateField(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the create field flag.

setCreateGabor(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that determines whether or not a Gabor filter image is created.

setCreateMaskImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

setCreateWatershedLines(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

setCreationDate(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setCreationDate(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setCreatorID(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setCRIRGBFilter(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setCrop(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the crop background flag.

setCrop(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the crop background flag.

setCrop(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets the crop volume.

setCrop(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the new crop volume in the ViewJComponentTriImage frames and sets the volumeBounds.

setCrosshairCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Changes the Crosshair cursor to be either the default crosshair or a pre-existing gif.

setCrosshairPixelGap(int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets the pixel gap to be used by the crosshair (in one direction away from the center)

setCrossoverValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Accessor that sets the crossover value at which the membership function = 0.5

setCsaImageAcquisitionMatrixText(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageBandwidthPerPixelPhaseEncode(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageEchoColumnPosition(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageEchoLinePosition(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageEchoPartitionPosition(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageGSWDDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageICE_Dims(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageImaAbsTablePosition(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageImaCoilString(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageImaPATModeText(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageImaRelTablePosition(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageMeasuredFourierLines(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageMosaicRefAcqTimes(double[][]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageMultistepIndex(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageNonPlanarImage(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageNumberOfImagesInMosaic(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImagePhaseEncodingDirectionPositive(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageProtocolSliceNumber(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageRealDwellTime(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageRFSWDDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageSequenceMask(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageSliceMeasurementDuration(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageSliceNormalVector(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageSlicePosition_PCS(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageTimeAfterStart(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaImageUsedChannelMask(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesAbsTablePosition(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesB1rms(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesB1rmsSupervision(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesCoilForGradient(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesCoilForGradient2(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesCoilId(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesCoilString(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesdBdt_limit(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesdBdt_max(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesdBdt_thresh(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesFlowCompensation(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesGradientDelayTime(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesGradientMode(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesIsocentered(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesLongModelName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMiscSequenceParam(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolacFlowComp0(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoladFlipAngleDegree0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolalTE0(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolalTR0(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnbValid(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnflFactor(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0aFFT_SCALEnlRxChannel(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlElementSelected(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnlRxChannelConnected(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDlCoilCopy(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtCoilID(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0asListnsCoilElementIDtElement(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0iUsedRFactor(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSauiNmbrOfNibbles(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0sCOILPLUGSaulPlugId(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolasCoilSelectMeas0tNucleus(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoldAveragesDouble(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoldRefSNR(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoldRefSNR_VOI(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollAverages(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollCombinedEchoes(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollContrasts(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollParadigmPeriodicity(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollProtID(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollRepetitions(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollScanTimeSec(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollTOM(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocollTotalScanTimeSec(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedInPlaneRot(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedPhaseFOV(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedReadoutFOV(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumedThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldCor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldSag(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesNormaldTra(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondCor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondSag(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatasAdjVolumesPositiondTra(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjFreProtRelated(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjMDSMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjProtID(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjRFMapMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjShimMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjTableTolerance(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjVolumeValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAdjDatauiAdjWatSupMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAngiolDynamicReconMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAngiolTemporalInterpolation(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAngioucPCFlowMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAngioucTOFInflow(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAslulMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsAutoAligndAAMatrix(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsBladeParadBladeCoverage(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsBladeParaucMotionCorr(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsDiffusionulMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsDistortionCorrFilterucMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsEFISPECbEFIDataValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglEchoTrainDuration(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglEPIFactor(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglSegments(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglShots(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglSliceTurboFactor(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImaginglTurboFactor(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsFastImagingucSegmentationMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent0(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent1(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent2(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent3(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECalShimCurrent4(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbB0CompensationValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbCrossTermCompensationValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbDelayValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbEddyCompensationValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbOffsetValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbSensitivityValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECbShimCurrentValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECflGSWDMinRiseTime(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityX(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityY(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECflSensitivityZ(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClDelayX(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClDelayY(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClDelayZ(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetX(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetY(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPEClOffsetZ(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationXaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationYaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsB0CompensationZaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXYaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationXZaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYXaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationYZaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZXaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsCrossTermCompensationZYaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflAmplitude4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationXaflTimeConstant4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflAmplitude4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationYaflTimeConstant4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflAmplitude4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECsEddyCompensationZaflTimeConstant4(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGRADSPECucMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGroupArrayanMember(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGroupArrayasGroup0nSize(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGroupArraylSize(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGroupArraysPSatdGap(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsGroupArraysPSatdThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacedAngioDynCentralRegionA(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacedAngioDynSamplingDensityB(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacedPhaseResolution(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacedSeqPhasePartialFourierForSNR(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacedSliceResolution(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelBaseResolution(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelImagesPerSlab(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelLinesPerShot(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelPartitions(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelPhaseEncodingLines(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelRadialInterleavesPerImage(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpacelRadialViews(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucAsymmetricEchoMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucAveragingMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucDimension(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucMultiSliceMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucPhasePartialFourier(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucPOCS(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucSlicePartialFourier(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucTrajectory(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceucViewSharing(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsKSpaceunReordering(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSdMdsRangeExtension(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSlmdsLinesPerSegment(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSlTableSpeedNumerator(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSsMdsEndPosSBCS_mmdTra(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSulMdsModeMask(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSulMdsReconMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsMDSulMdsVariableResolution(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsNavigatorParalBreathHoldMeas(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsNavigatorParalRespComp(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsParametricMappingucParametricMap(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatlAccelFact3D(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatlAccelFactPE(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatlRefLinesPE(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatucPATMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatucRefScanMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPatucTPatAverageAllFrames(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglMethod1(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglMethod2(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglPhases(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglRetroGatedImages(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglSignal1(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImaginglSignal2(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlArrhythmiaDetection(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOffThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlCardiacGateOnThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerIntervals(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerPulses(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioECGlTriggerWindow(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlArrhythmiaDetection(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOffThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlCardiacGateOnThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerIntervals(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerPulses(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioExtlTriggerWindow(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucFlowSenMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioNativeucMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselArrhythmiaDetection(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOffThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselCardiacGateOnThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerIntervals(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerPulses(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioPulselTriggerWindow(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioRespdGatingRatio(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGatePhase(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPhysioImagingsPhysioResplRespGateThreshold(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodFlipAngle(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesdDarkBloodThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesdIRPulseThicknessFactor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesdT2PrepDuration(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucFatSat(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucFatSatMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucInversion(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucSatRecovery(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucT2Prep(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucTIScout(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsPrepPulsesucWaterSat(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflGMax(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflNominalB0(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfoflRiseTime(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfolMaximumNofRxReceiverChannels(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfotBaselineString(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsProtConsistencyInfotSystemType(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRawFilterlSlope_256(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRawFilterucMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRawFilterucOn(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0dThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldCor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldSag(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sNormaldTra(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondCor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondSag(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArrayasElm0sPositiondTra(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRSatArraylSize(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRXSPECalDwellTime0(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRXSPECbGainValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsRXSPEClGain(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayanAsc(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayanPos(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdInPlaneRot(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdPhaseFOV(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdReadoutFOV(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezdThickness(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldCor(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldSag(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsNormaldTra(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondCor(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondSag(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayasSlicezsPositiondTra(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArraylConc(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArraylSize(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArraysTSatdThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSliceArrayucMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalAutoRefScanNo(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalDecouplingType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalExcitationType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalNOEType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalPhaseCyclingType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalPhaseEncodingType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalRFExcitationBandwidth(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalSpecAppl(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParalSpectralSuppression(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsSpecParaucRemoveOversampling(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnbAmplitudeValid(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEnflAmplitude(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECaRFPULSEntName(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bAmplitudeCorrectionValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bFrequencyValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bReferenceAmplitudeValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0bRFPAIndexValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flAmplitudeCorrection(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0flReferenceAmplitude(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0lFrequency(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo0tNucleus(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bAmplitudeCorrectionValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bFrequencyValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bReferenceAmplitudeValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1bRFPAIndexValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1flAmplitudeCorrection(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECasNucleusInfo1lRFPAIndex(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECbKDynValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipHigh(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeClipLow(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMax(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynMagnitudeMin(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseClip(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECflKDynPhaseMax(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPEClBCExcitationMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPEClBCSeqExcitationMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPEClNoOfTraPulses(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECucBCExcitationModeValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECucExcitMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECucRFPulseType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsTXSPECucSimultaneousExcitation(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsWiPMemBlockadFree(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsWiPMemBlockalFree(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolsWiPMemBlocktFree(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltdefaultEVAProt(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltProtocolName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltReferenceImage0(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltReferenceImage1(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltReferenceImage2(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocoltSequenceFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucAAMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucAARefMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucAARegionMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucAutoAlignInit(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucBold3dPace(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucBOLDParadigmArray(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucCineMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucCoilCombineMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucDisableChangeStoreImages(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucDixon(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucDixonSaveOriginal(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucEnableIntro(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucEnableNoiseAdjust(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucFlipAngleMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucForcePositioningOnNDIS(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucInteractiveRealtime(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucInternalTablePosValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucOneSeriesForAllMeas(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucPHAPSMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucReadOutMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucReconstructionMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucScanRegionPosValid(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucSequenceType(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucTablePositioningMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolucWaitForPrepareCompletion(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolulVersion(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrPhoenixProtocolWaitForUserStart(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesMrProtocolVersion(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesNumberOfPrescans(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesOperation_mode_flag(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesPATModeText(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesPatReinPattern(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesPhaseGradientAmplitude(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesPositivePCSDirections(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesProtocolChangeHistory(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesReadoutGradientAmplitude(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesReadoutOS(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesRelTablePosition(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesRFSWDMostCriticalAspect(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesRFSWDOperationMode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesRfWatchdogMask(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSARMostCriticalAspect(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSed(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSelectionGradientAmplitude(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSequenceFileOwner(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSliceArrayConcatenations(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSliceResolution(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesStim_faktor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesStim_lim(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesStim_max_ges_norm_online(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesStim_max_online(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesStim_mon_mode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesSW_korr_faktor(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriest_puls_max(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesTablePositionOrigin(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesTalesReferencePower(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCsaSeriesTransmitterCalibration(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setCSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets size of neighborhood window for pixel contrast calculations

setCTButtonEnabled(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that enables or disables the CT button.

setCTMode(int, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This method is used to set Computed Tomography (CT) presets for CT images.

setCTMode(int, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This method is used to set Computed Tomography (CT) presets for CT images.

setCTYPE1(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCTYPE2(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCTYPE3(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCTYPE4(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCTYPE5(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCUNIT1(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCUNIT2(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCUNIT3(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCUNIT4(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCUNIT5(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setCurrentColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setCurrentDirectory(File) - Method in class gov.nih.mipav.view.JPanelFileSelection

sets the file chooser and the text field to point to a different file.

setCurrentLabels(String, String, String, String) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

setCurrentOrientation(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setCurrentShader() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setCurrentShortcut(KeyStroke) - Static method in class gov.nih.mipav.view.Preferences

Sets the current keystroke shortcut for assignment once a command has been passed in.

setCurrentSlice(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

Specify the slice containing the VOI to optimize.

setCurrentState(Object) - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface

Set the BranchState in the FlyPathBehavior.

setCurrentState(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Set the current traversing branch.

setCurrentState(Object) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

setCursor(Cursor) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from VOIManager to change the mouse cursor.

setCursor(Cursor) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJFrameImage

setCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

setCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

setCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setCursor(Cursor) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setCursorMode(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Switches modes based on the variable mode.

setCursorMode(int) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Switches modes based on the variable mode.

setCursorMode(int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

setCurvatureWeight(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the curvature weight 'c'.

setCurveAnnotation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

setCurveName(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setCurveName(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setCurvePathAnnotateItem(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Set the annotation point along the path.

setCurvePathAnnotateItem(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Set the annotation point along the path.

setCurves(VOIBaseVector) - Method in class gov.nih.mipav.model.structures.VOI

Sets the list of contours in this VOI to a new list.

setCurveSelected(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setCurveSelected(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setCurveType(int) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the curveType to the parameter.

setCurveVisible(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setCurveVisible(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

SetCustomBlend(int, int, int, int, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

SetCustomBlend(int, int, int, int, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

SetCustomBlend(int, int, int, int, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetCustomBlend(int, int, int, int, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

SetCustomBlend(int, int, int, int, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setCylinderReconstruction(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set cylinderReconstruction.

setD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setD(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Accessor that sets d.

SetD() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setDarkObjectOnWhiteBackground(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

setData(double[]) - Method in class gov.nih.mipav.model.algorithms.CVODES.NVector

setData(float[][]) - Method in class gov.nih.mipav.model.GaussianKernel

setData(float[][]) - Method in interface gov.nih.mipav.model.Kernel

setData(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

setData(AlgorithmNetworkSnake.Metadata) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.IMetadataProvider

setData(AlgorithmNetworkSnake.Metadata) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

setData(ModelSurfaceTopology.Edge, Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology

Set the attribute data associated with the specified edge.

setData(ModelSurfaceTopology.Triangle, Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology

Set the attribute data associated with the specified triangle.

setData(ModelSurfaceTopology.Vertex, Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology

Set the attribute data associated with the specified vertex.

setData(String, String, Boolean) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

SetData(ByteBuffer, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage

setDataCompression(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setDataDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setDataEncode(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setDataOffset(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO

Method to preset the image data offset.

setDataSetFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setDatasetName(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets datasetName.

setDataText(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Accessor to set text of data FRAME.

setDataType(int) - Method in class gov.nih.mipav.model.file.FileBase

DOCUMENT ME!

setDataType(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets format of image data.

setDataType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

Accessor that sets whether color image type is ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT

setDataType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the data type for what the converted image is to be.

setDataType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the data type for what the converted image is to be.

setDataType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO

Accessor that sets the appropriate radio button as given by the image-data type.

setDataType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets whether color image type is ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT

setDataType(short) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Accessor to supply coded datatype.

setDataType(short) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Accessor to supply coded datatype.

setDataType(short) - Method in class gov.nih.mipav.model.file.FileInfoSPM

accessor to supply coded datatype.

setDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Permits 10 charactar large string for data-type.

setDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

permits 10 charactar large string for data-type.

setDate(int, Date) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a java.util.Date value for the specified tag.

setDate(MetadataExtractor.IccDirectory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader

setDate(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDate(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the date for the parameter.

setDate_created(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setDateAcquired(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setDateProcessed(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setDateTime(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the date + T + time for the parameter.

setDateWritten(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setDazzleProtection(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setDBdt(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDBname(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Set the database name - limit 18 character max to set the DB_NAME value.

setDBname(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Set the database name - limit 18 character max to set the DB_NAME value.

setDBname(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

18 character max to set the DB_NAME value.

setDcmmeta_affine(double[][]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDcmmeta_reorient_transform(double[][]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDcmmeta_shape(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDcmmeta_slice_dim(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDcmmeta_version(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setDebugLevels(Map<Integer, String>) - Static method in class gov.nih.mipav.view.Preferences

Sets the debug levels

setDebugOutput(PrintStream) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

setDecayCorrected(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

SetDecFac(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA

decrease factor in the temperature scheme.

setDecim(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

Accessor that sets decim.

setDecimationFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the decimation flag.

setDecompressStructureSizes(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setDefault() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets modes in all images to ViewJComponentBase.DEFAULT.

setDefault(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the "default" flag.

setDefault(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the default value.

SetDefaultAlphaState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setDefaultCursor() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from VOIManager to set the default mouse cursor.

setDefaultCursor() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setDefaultCursor() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setDefaultDirectory(String) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Accessor that sets the default directory.

setDefaultDirectory(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets directory location of last file access.

setDefaultDisplay(Preferences.DefaultDisplay) - Static method in class gov.nih.mipav.view.Preferences

Sets the default display mode for 2D/3D image display.

setDefaultLevel(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setDefaultLighting() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setDefaultMode() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setDefaultMode.

setDefaultMode() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setDefaultMode.

setDefaultRangeDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets range and domain to defaults.

setDefaultRanges() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Sets the default values for the input and output range.

setDefaultRanges() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Sets the default values for the input and output range.

setDefaultResampleToUser() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

setDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

Set the default values for the parameters.

setDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Set the default values for the parameters.

setDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Set the default values for the parameters.

setDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Set the default values for the parameters.

setDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Set the default values for the parameters.

setDefaults() - Method in class gov.nih.mipav.view.ViewJSlider

Sets defaults

setDefaults() - Method in class gov.nih.mipav.view.ViewOpenImageSequence

The purpose of this method is to load the previous values in from the preferences file.

setDefaultScriptDirectory(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets directory location of the script files.

setDefaultShape(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList

Set the default shape for rendering all subsequent annotated items to that specified.

setDefaultValue(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie

Sets the default value to use in MetadataExtractor.ByteTrie.find(byte[]) when no path matches.

setDefaultWindow(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setDegree(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Set the image rotation angle.

setDegree(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets degree array for set of spherical harmonic basis functions

setDegreeOfFiltering(float) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets degree of filtering

setDelayBetweenVolumes(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDelete() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

setDeleteEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A method to set the delete button to the given enabled status.

setDeleteEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A method to set the delete button to the given enabled status.

setDeleteVisble(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A method to set the delete button to the given enabled status.

setDeleteVisble(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A method to set the delete button to the given enabled status.

setDelimiter(char) - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile

setDelta(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

setDeltaWeight(double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection

setDerivativeOrder(int) - Method in class gov.nih.mipav.model.GaussianKernelFactory

setDerivativeScale(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Accessor that sets the derivativeScale.

setDerivedImage(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setDeriveGains(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDescforAddParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

string holding set description when adding a parameter.

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows no more than 80 characters to fill in the analyze-image description.

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

allows no more than 80 characters to fill in the analyze-image description.

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Project

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Screen

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows no more than 80 characters to fill in the SiemensText-image description.

setDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows no more than 80 characters to fill in the SPM-image description.

setDescription(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the description for the parameter.

setDescription(String) - Method in class gov.nih.mipav.model.file.XMLPSet

setDescription(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setDescription(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt

Set the description of this filter as it should be returned by the getDescription override method.

setDescription(String) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set description associated with this light.

setDescription(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item

Set the description associated with the annotated point.

setDescription(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM.Item

Set the description associated with the annotated point.

setDescriptor(MetadataExtractor.TagDescriptor<?>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets the descriptor used to interpret tag values.

setDestination(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

SetDestShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Sets the shape to warp to.

SetDestShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear

Sets the shape to warp to.

setDetectionWavelength(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorBinning(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorDigitalGain(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorEMGain(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorGain(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorHeadNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

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setDetectorOffset(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorReadOutRate(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorRefDetectorID(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

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setDetectorRefDocumentRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

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setDetectorRefGain(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

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setDetectorRefOffset(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

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setDetectorUseBrightnessContrastCorrection(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDetectorVoltage(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDeviceScalingName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setDFPintoAFP(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

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setDFPintoFRET(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

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setDiagnosis(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the subject's diagonosis.

setDiagonalVerts(Vector3f[]) - Method in class gov.nih.mipav.view.PatientSlice

Sets the four corners of the bounding box for this slice in FileCoordinates so that the volume data can be exported along a diagonal slice, based on the positions of the input bounding box.

setDialogVisible(boolean) - Method in class gov.nih.mipav.view.ViewJColorChooser

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setDialogWidthAdd() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

Specifies an addendum to the preferred size of the dialog equal to the length of the longest image.

setDiameter(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

setDiameter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the kernel diameter.

setDiameter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the kernel diameter.

setDichroic(String, String, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter

DOCUMENT ME!

setDICOMBrowserTableConfiguration(Vector<String>) - Static method in class gov.nih.mipav.view.Preferences

Sets the user-configured columns that indicate the DICOM tags that are displayed in the DICOM browser table.

setDICOMCatcher(DICOM_Receiver) - Method in class gov.nih.mipav.view.ViewUserInterface

Accessor to set the DICOM receiver.

setDicomInfo(FileInfoDicom) - Method in class gov.nih.mipav.view.JPanelAnonymizeImage

allows the checkboxes to be disabled by testing the file info for the tags present.

setDICOMMessageDisplayer(DICOMDisplayer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Sets the display viewer.

setDICOMQueryFrame(ViewJFrameDICOMQuery) - Method in class gov.nih.mipav.view.ViewUserInterface

Accessor to set the DICOM query frame.

setDicomTable(Hashtable<String, String>) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the dicom converted tag hashtable

setdiff(Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

setDiffuse(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the diffuse color for the vertex.

setDiffuse(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Set vertex material diffuse color.

setDiffuse(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the diffuse color of the surface:

setDiffuse(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the diffuse color of the surface:

setDiffuse(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the diffuse color for the vertex.

setDiffuse(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the diffuse color of the surface:.

setDiffuse(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the diffuse color of the surface:.

setDiffusion(float[][]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDiffusionAnisotropyType(String[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDiffusionBFactor(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDiffusionBValueNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDiffusionExperimentsPerDirection(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionGradientAmplitude(double[]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionGradientDuration(double[]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionGradientSeparation(double[]) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionGradientSwitchingScheme(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionIterations(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3

Set the number of iterations to use in the nonlinear diffusion (curvature flow filter) applied to the input image.

setDiffusionMeasurementMode(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionModuleDuration(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionModuleEchoDelay(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusionPreparation(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDiffusitivityDenom(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Accessor that sets the diffusitivityDenom.

setDiffVolume(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation

Set the diff volume of the current treatment.

setDigitalGain(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setDigitNumber(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

/** Accessor that sets the number of digits to use when appending to the multi file save (i.e., if you want test00.tif to be the first file, 0 is the start number and 2 is the digit number).

setDijkstra(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Displays the Geodesic (dijkstra's along the mesh) distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setDijkstra(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Displays the Geodesic (dijkstra's along the mesh) distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setDilationSize(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the dilation size for dilating the voxelized brain surface obtained by rasterizing the triangle mesh.

setDilationSize(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the dilation size for dilating the voxelized object surface obtained by rasterizing the triangle mesh.

setDim(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setDim(short) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

setDim(short) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

DOCUMENT ME!

setDim(short) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setDimAndResXYZ() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Resets the dimension and resolution fields for resampling panel.

setDimB(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimensionM(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setDimensionNode(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the dimension node (xspace, yspace and optional zspace nodes)

setDimensionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setDimensionP(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setDimensions(int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setDimensions(int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setDimH(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimI(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimM(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimR(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimS(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDimV(int) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDiognostician(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setDirection(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setDirection(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setDirection(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current direction of the light.

setDirection(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

Set the light direction.

setDirection(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Set the light direction.

setDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current direction of the light.

setDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

Set the light direction.

setDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Set the light direction.

setDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setDirectionNeeded(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

setDirectScaledSwitching(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the ContourPlot.CoordSysRenderer.isDirty state of this CoordSysRenderer to true.

setDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

Sets the ContourPlot.Legend.isDirty() state of this legend to true.

setDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

Sets the ContourPlot.Lines.isDirty() state of this renderable to true.

setDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the ContourPlot.Text.isDirty() state of this renderable to true.

setDirty() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

Sets the ContourPlot.Triangles.isDirty() state of this ContourPlot.Triangles object to true.

setDisplay(boolean) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink

Sets whether the surface should be displayed.

setDisplay(boolean) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.VOILink

Sets whether or not the VOI should be displayed.

SetDisplay(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Set the object display to on/off.

setDisplayAllGlyphs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Turns on/off displaying all the glyphs.

setDisplayAllGlyphs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying all the glyphs.

setDisplayAndAsk(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

setDisplayAnnotation(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setDisplayAnnotationLabel(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setDisplayArrows(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Turns on/off displaying the fiber bundle tracts with 3d arrows.

setDisplayArrows(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the fiber bundle tracts with 3D arrows.

setDisplayAspectTime(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setDisplayAspectX(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setDisplayAspectY(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setDisplayAspectZ(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setDisplayCylinders(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Turns on/off displaying the fiber bundle tracts with cylinders.

setDisplayCylinders(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the fiber bundle tracts with ellipsoids.

setDisplayEllipsoids(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Turns on/off displaying the fiber bundle tracts with ellipsoids.

setDisplayEllipsoids(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the fiber bundle tracts with ellipsoids.

setDisplayFuzzy(boolean) - Method in interface gov.nih.mipav.view.PaintGrowListener

Sets whether a fuzzy image is displayed.

setDisplayFuzzy(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether a fuzzy image is displayed.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocNew() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayLocReplace() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

setDisplayMatrixSize(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setDisplayMode(int) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the display mode to the parameter.

setDisplayMode(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Change the image display mode.

setDisplayMode3D(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Hack.

setDisplayMode3D(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Hack.

setDisplayName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDisplayOptions(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setDisplayProgressBar(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Set the display progress bar flag.

setDisplayProgressBar(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Set the display progress bar flag.

setDisplayProgressBar(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Set the display progress bar flag.

setDisplayRangeOfSlicesDialog(boolean) - Method in class gov.nih.mipav.model.file.FileIO

setDisplaySlicesCheck(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Set the tri-planar slices check box to true of false

setDisplaySurfaceCheck(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Set the surface check box to true of false

setDisplayTransform(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the display transform flag.

setDisplayTransform(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the display transform flag.

setDisplayTransform(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the display transform flag.

setDisplayTubes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Turns on/off displaying the fiber bundle tracts with tubes.

setDisplayTubes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the fiber bundle tracts with tubes.

setDisplayVOICheck(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Set the VOI check box to true of false

setDisplayVolumeCheck(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

Set the volume check box to true of false

setDisposeImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

setDissimilarity(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if dissimilarity operator is calculated.

setDissimilarity(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if dissimilarity operator is calculated.

setDistance(float) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode

Accessor that sets the the maximum threshold distance to remove objects at.

setDistanceDecline(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

setDistanceFlag(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Sets whether the largest distance is calculated.

setDistanceFromIsocenter(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setDivisions(int) - Method in class gov.nih.mipav.view.BarMeter

applies the given int to the total number of bars on the display.

setDo25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Accessor that sets if slice by slice processing occurs.

setDo25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Accessor that sets if slice by slice processing occurs.

setDoAdjacent(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set doAdjacent.

setDoAveraging(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

setDOB(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set subject's date of birth.

setDOBDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setDOBMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setDOBYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setDoCenter(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

setDoCenter(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets whether the center of rotation point should be displayed and the user should be allowed to change it.

setDoCoarseness(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets if coarseness is calculated

setDoColocWithThresholds(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setDoContrast(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets if contrast is calculated

setDocumentSize(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogText

Attempts to set the size of the text display area to the supplied number of text-columns and rows.

setDocumentSubtype(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setDocumentType(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setDoDirectionality(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets if directionality is calculated

setDOF(int) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the degrees of freedom.

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the degrees of freedom.

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the degrees of freedom.

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the degrees of freedom.

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the degrees of freedom.

setDOF(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the degrees of freedom.

setDoFilter(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

setDoGeometricCenterLabel(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

If doGeometricCenterLabel = true and active == false and closed = true, execute drawGeometricCenterLabel when in drawSelf

setDoGraph(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set if a graph should be brought up of rotations & translations.

setDoInvMat(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the boolean for invert matrix.

setDoLinearRescale(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets whether or not linear rescaling occurs.

setDoLogResult(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets whether or not log of result image is displayed.

setDoLogX(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setDoLogY(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setDomain(float, float) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets the domain of the graph according to the min and max parmaters.

setDoMultiThread(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur

setDontOpenFrame(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

setDoOnlyActiveContours(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Sets the flag for calculating totals ONLY for active contours

setDoOr(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setDoRician(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets doRician

setDoSecondIteration(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setDoTalairach(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the boolean for doing a Talairach type transformation.

setDotTables(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

setDouble(int, double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a double value for the specified tag.

setDouble(int, double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setDouble(int, double) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the double data in float format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the double value in unsigned short format.

setDouble(int, double) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the double value in unsigned short format.

setDoubleArray(int, double[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a double[] (array) for the specified tag.

setDoubleArray(int, double[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setDoubleArray(int, double[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setDoubleDataFields(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient

Sets the dialog to use/not use double data entry (re-type each field)

setDoVOI(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Accessor that tells whether VOIs are transformed.

setDoVOIImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

setDoVOISubtraction(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setDoWaveletImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

Accessor that sets whether or not the wavelet images are displayed.

setDoWaveletImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets whether or not the wavelet image is displayed.

setDownSampleResolutions(ArrayList<Integer>) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

setDrawingContext(ScreenCoordinateListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setDrawingShape(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

Set the shape of the drawing sculptor.

setDrawingShape(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the shape of the drawing sculptor.

setDrawingShape(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the sculpt drawing shape.

setDrawVOIs(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setDropperColor(ColorRGBA, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Set the paint can color.

setDropperColor(ColorRGBA, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Sets the dropper color.

setDropperColor(ColorRGBA, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Passes the picked dropper color to the surface interface.

setDTComponent(int[][]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets dt component array

setDTIColorImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Set the DTI Color image

setDTIimage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

setDTIImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Set the DTI image

setDTIImage(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the DTI Image for displaying the tensors as ellipsoids.

setDTIImage(ModelImage, ModelImage, ModelImage, Renderer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Sets the DTI Image for displaying the tensors as ellipsoids.

setDTIParameters(DTIParameters) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the DTIParamters object

setDWMRI_B_VALUE(String) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting DWMRI_B_VALUE

setDwmriGradient(String[][]) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting dwmriGradient

setdx(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

setdy(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

setDyeDatabaseID(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDyeID(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setDynamicScanBeginTime(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDynamicScanNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setDynamicStudyGeneral(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setdz(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

sete_l(LSCM.Edge, double) - Method in class gov.nih.mipav.model.algorithms.LSCM

sete_mark(LSCM.Edge, int) - Method in class gov.nih.mipav.model.algorithms.LSCM

sete_sharp(LSCM.Edge, boolean) - Method in class gov.nih.mipav.model.algorithms.LSCM

setEast(AlgorithmNetworkSnake.PixelGrid.PixelGridNode) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setEchoNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setEchoNumber(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEchoNumbers(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setEchoTime(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setEchoTime(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setEchoTime(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setEchoTime(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setEchoTrainLength(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEchoTrainLength(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setEcode(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets ecode array, the data format of the header field in the header extension

setedge(LSCM.Edge) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

setEdgeKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the edge detection kernel size.

setEdgeN() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

setEdgeOptions(float, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

Call from dialog if you wish to produce edge image.

setEdgeOptions(float, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression

Call from dialog if you wish to produce edge image.

setEdgingType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges

Accessor that sets the Edging Type.

setEffectiveSpectralBandwidth(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setElapsedStudyDuration(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setElement(int) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the Element of this DICOM tag as read in by FileDicom.

setElement(int, int, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

Set the element value at the specified row,col.

setElementsEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Sets the surface options GUI panel to enabled or disabled.

setElementsEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Sets the surface options GUI panel to enabled or disabled.

setEllipseMod(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Set the m_iEllipsoidMod value.

setEllipseMod(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the m_iEllipsoidMod value.

setElts(int, AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setElts(AlgorithmPowerWatershed.RbtElt[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setEmail(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setEmail(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Sets email.

setEmail(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter

DOCUMENT ME!

setEmail(String, int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the investigator's email using an index.

setEmbeddedDimensions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

Accessor that sets the number of embedded dimensions.

setEmFilter(String, String, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter

DOCUMENT ME!

setEmissionFilterChangerArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setEmissionWavelength(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setEmissionWavelength0(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setEmissionWavelength1(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setEmissionWavelength2(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setEmissionWavelength3(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setEmissive(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the emissive color of the surface:

setEmissive(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the emissive color of the surface:

setEmissive(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the emissive color of the surface:.

setEmissive(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the emissive color of the surface:.

setEnable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Enables picking with the mouse and drawing the curve on the mesh.

setEnable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Set the radio button for view volume aligned enable or not.

setEnable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

DOCUMENT ME!

setEnable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Enables picking with the mouse and drawing the curve on the mesh.

setEnableCloseImageBAfterLoad(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets whether the close image B option should appear after loading.

setEnabled(boolean) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set enabled

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Since geodesic line only apply to the texture render surface, all the buttons are enabled only if the suface vector size is greater than 0.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Enables or disables the interface.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Enables/disables the user-interface

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Do nothing methods, just extend the ViewJframeBase.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set enabled

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Since geodesic line only apply to the texture render surface, all the buttons are enabled only if the suface vector size is greater than 0.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

Enables or disables the interface.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Enables/disables the user-interface

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Currently not used.

setEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Enables or disables the component for modification.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Controls whether or not the images/VOIs of the frame can be modified.

setEnabled(JButton, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the specified button to enabled or disabled, depending on the boolean parameter.

setEnabledGraph(boolean) - Method in class gov.nih.mipav.view.ViewJPopupPt

Enables or disables the show graph menu item accordingly.

setEnabledList(boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Sets whether or not all checkboxes are enabled.

setEnabledList(boolean[]) - Method in class gov.nih.mipav.view.JPanelChecklist

Sets the boxes which are enabled.

setEnabledList(int, boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Sets a particular box which to be visible.

setEnabledList(String, boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Sets a particular box which to be visible by specifying the name of the label.

setEnabledMenuItems(int, int) - Method in class gov.nih.mipav.view.ViewMenuBar

Enable or disable items in a menubar based on the image dimensionality and storage type.

setEnabledOrder(boolean) - Method in class gov.nih.mipav.view.ViewJPopupVOI

DOCUMENT ME!

setEnabledProp(boolean) - Method in class gov.nih.mipav.view.ViewJPopupPt

Enables or disables the propSub menu item accordingly.

setEnabledPropagate(boolean) - Method in class gov.nih.mipav.view.ViewJPopupVOI

DOCUMENT ME!

setEnabledProps(boolean) - Method in class gov.nih.mipav.view.ViewJPopupVOI

DOCUMENT ME!

setEnableMouseBehaviors(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

set the MouseBehavior enabled states. this is used to turn on and off the mouse behavior

setEnableStepSize(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set enableStepSize.

setEncoding(String) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting encoding string telling data compression method

setEndCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Set the end calendar.

setEndDay(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the end day.

setEndianess(boolean) - Method in class gov.nih.mipav.model.file.FileBase

DOCUMENT ME!

setEndianess(boolean) - Method in class gov.nih.mipav.model.file.FileInfoBase

Describes file endianess.

setEndianess(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the endianess.

setEndianess(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the endianess.

setEndIndex(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator

setEndIndex(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Set the index of the vertex in the triangle mesh where the Geodesic curve is to end.

setEndIndex(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Set the index of the vertex in the triangle mesh where the Geodesic curve is to end.

setEndIndices(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the indices of the triangle that the end point is located in.

setEndIndices(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the indices of the triangle that the end point is located in.

setEndMonth(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the end month.

setEndPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the end point of the geodesic curve on the mesh.

setEndPoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the end point of the geodesic curve on the mesh.

setEndRange(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets the ending range of histogram.

setEndSlice(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the slice to stop writing at (3D).

setEndSlice(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the end slice for X, Y, or Z processing.

setEndSurface(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

The start and end surfaces ensure that the points on the geodesic curve all fall on one mesh, and that the algorithm isn't trying to find a path between two unconnected meshes.

setEndSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

The start and end surfaces ensure that the points on the geodesic curve all fall on one mesh, and that the algorithm isn't trying to find a path between two unconnected meshes.

setEndTime(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the time slice to stop writing at (4D).

setEndTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the end tol.

setEndTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the end tol.

setEndTol(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the end tol.

setEndTol(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the end tol.

setEndTol(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the end tol.

setEndX(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEndY(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEndYear(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the end year.

setEndZ(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEnergy(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if energy operator is calculated.

setEnergy(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if energy operator is calculated.

setEnergyImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed

This image is typically the gradient magnitude.

setEnergyWindow(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setEnergyWindowLowerLevel(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setEnergyWindowsNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setEnergyWindowUpperLevel(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setEnhanced4D(boolean) - Method in class gov.nih.mipav.model.file.FileDicom

setEnhancedNumSlices(int) - Method in class gov.nih.mipav.model.file.FileDicom

setEnhancedTagTables(int) - Method in class gov.nih.mipav.model.file.FileDicom

setEnhancedTagTablesNull() - Method in class gov.nih.mipav.model.file.FileDicom

setEnhancedThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the enahncedThreshold value

setEntireImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setEntireImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setEntropy(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if entropy operator is calculated.

setEntropy(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if entropy operator is calculated.

setEps(double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

setEps(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

eps is the stopping criterion.

setEpsilon() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Determines an appropriate epsilon, based on the size of the triangles in the mesh.

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

setEpsilon(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setEqualRange(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setEqualValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setEquation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setEquipmentName(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the scan Equipment Model Name associated with image.

setErosionIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the number of erosions / dialations.

setEsize(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets esize array, the number of bytes in each header field in the header extension

setEuclidian(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Displays the Euclidian distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setEuclidian(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Displays the Euclidian distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setEValueimage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

setEValueImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Set the eigen value image

setEventDescription(String[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setEventTime(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setEventType(int[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setEVimage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

setEVImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Set the eigen vector image

setEW(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if east west offset direction is calculated.

setEW(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if east west offset direction is calculated.

setExamName(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setExamType(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setExcitationArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setExcitationsNumber(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setExcitationWavelength(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setExcitationWavelength0(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExcitationWavelength1(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExcitationWavelength2(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExcitationWavelength3(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExFilter(String, String, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter

DOCUMENT ME!

setExitCmdLineOnError(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets MIPAV to exit (true) or not (false) on an error when running from the command line

setExperimentDate(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the experiment date string.

setExperimentDate(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows a maximum of 10 characters to set the experiment date string.

setExperimentDateandTime(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows a maximum of 10 characters to set the experiment date string.

setExperimenterName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setExperimenterRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset

DOCUMENT ME!

setExperimenterRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experiment

DOCUMENT ME!

setExperimenterRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Project

DOCUMENT ME!

setExperimentRef(Integer, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setExperimentTime(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the experiment time string.

setExperimentTime(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows a maximum of 10 characters to set the experiment time string.

setExpFuzzifier(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Accessor that sets the exponential fuzzifier.

setExPhotonCnt(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setExponent(float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Set the spot cone exponent.

setExposureArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setExposureTime(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

setExposureTime(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setExposureTime0(int, double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExposureTime1(int, double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExposureTime2(int, double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExposureTime3(int, double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExtension(String) - Method in class gov.nih.mipav.model.structures.VOI

Sets the VOI extenstion of voi file name of voi was read in through file

setExtents(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setExtents(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setExtents(int[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets dimensionality of the images.

setExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelImage

setExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the dimExtents for this structure.

setExtents(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setExtents(int, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets dimensionality for image, on a per dimension basis.

setExtentScale(int) - Method in class gov.nih.mipav.model.GaussianKernelFactory

setExternalNodes(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setExternalShutter1(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setExtractPaint(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Sets whether to extract the brain to a paint mask instead of removing non-brain image data.

setExtractPaint(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the extract to paint parameter.

setExtractToPaint(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Sets whether or not to stop segmentation at paint.

setExtreme(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the view port extreme value e.

setExtremityCoil(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setEyeClipPlane(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Sets the eye clip plane position.

setEyeClipPlane(float, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the eye clip plane position.

setEyeColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the eye clip plane color.

setEyeDist(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the z value of the eye point (0,0,z).

setEyeInvClipPlane(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Sets the eye clip plane position.

setEyeInvClipPlane(float, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the inverse-eye clip plane position.

setEyeInvColor(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the inverse-eye clip plane color.

setEyetrackerRecordingMode(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Set the eye tracking recording mode type

setEyetrackerRecordMode(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setEyeTrackingEnabled(boolean, String) - Static method in class gov.nih.mipav.view.MipavUtil

When the plug-in eye tracker record button is clicked, it re-initial the eye tracker csv file recording stream.

setEyeTrackingEnabled(boolean, String, ViewJComponentEditImage) - Static method in class gov.nih.mipav.view.MipavUtil

When the plug-in eye tracker record button is clicked, it re-initial the eye tracker csv file recording stream.

setf_touched(LSCM.Face, boolean) - Method in class gov.nih.mipav.model.algorithms.LSCM

setF1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Accessor that sets the frequency 1 variable.

setF1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

Accessor that sets the frequency 1 variable.

setF1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

Accessor that sets the frequency 1 variable.

setF2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Accessor that sets the frequency 2 variable.

setF2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

Accessor that sets the frequency 2 variable.

setF2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

Accessor that sets the frequency 2 variable.

setface(LSCM.Face) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

Set the x-axis amd y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom

Set the y-axis movement multipler with factor.

setFactor(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior

Set the y-axis movement multipler with factor.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFactor(double, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

Set the x-axis amd y-axis movement multipler with xFactor and yFactor respectively.

setFAimage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

setFAImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Set the functional anisotropy image

setFastMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).

setFastMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).

setFastMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).

setFastMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).

setFAValues() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.FlipAngleChangeListener

setFax(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

SetFF(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFFi(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFFp(int, Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFFp1(int, Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFFp2(int, Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFieldDistance(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the field distance.

setFieldDistance(float) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the field distance.

setFieldNames(String[]) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setFieldOfView(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setFieldSkip(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supplies the submitted value to the field_sip variable.

setFieldSkip(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supplies the submitted value to the field_sip variable.

setFieldSkip(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supplies the submitted value to the field_sip variable.

setFieldStrength(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setFilament(String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource

DOCUMENT ME!

setFileBlocks(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setFileDate(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFileDir(String) - Method in class gov.nih.mipav.model.file.FileBRUKER

Accessor to set the file directory (used for reading BRUKER files).

setFileDir(String) - Method in class gov.nih.mipav.model.file.FileIO

Sets the directory where the file will be saved or opened.

setFileDir(String) - Method in class gov.nih.mipav.model.file.FileJP2

Accessor to set the file dir (used when reading TIFF multiFile).

setFileDir(String) - Method in class gov.nih.mipav.model.file.FileSVS

Accessor to set the file dir (used when reading TIFF multiFile).

setFileDir(String) - Method in class gov.nih.mipav.model.file.FileTiff

Accessor to set the file dir (used when reading TIFF multiFile).

setFileDirectory(String) - Method in class gov.nih.mipav.model.file.FileInfoBase

DOCUMENT ME!

setFileDirectory(String) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the file directory.

setFileExtents(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

setFileExtents(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

DOCUMENT ME!

setFileExtents(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setFileFilter(int) - Static method in class gov.nih.mipav.view.Preferences

Sets the current used file filter as the latest used file filter.

setFileFilter(FileFilter) - Method in interface gov.nih.mipav.view.FileSelector

Sets the file filter to the FileSelector.

setFileFilter(FileFilter) - Method in class gov.nih.mipav.view.FileSelectorImpl

setFileFormat(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the file format.

setFileFormat(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setFileID(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFileInfo(FileInfoBase[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the entire fileInfo array of the image.

setFileInfo(FileInfoBase, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the fileInfo class for the image.

setFileInfo(FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicom

Sets the file info and sets the hasHeaderBeenRead to true.

setFileInfo(FileInfoNRRD) - Method in class gov.nih.mipav.model.file.FileNRRD

setFileInfo(FileInfoNRRD, ModelImage) - Method in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

setFileInfo(FileInfoTrackVis) - Method in class gov.nih.mipav.model.file.FileTrackVis

setFileInput(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

setFileLink(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFileLocation(String) - Method in class gov.nih.mipav.view.dialogs.ScriptImage

setFilename(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFileName() - Method in class gov.nih.mipav.view.dialogs.InstanceVOI

setFileName(File, FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicom

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects based on the new image file based on the new filename and the new directory.

setFileName(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB

Accessor to set the file name (used for reading COR multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileAfni

setFileName - accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileBMP

Accessor to set the file name (used for reading COR multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileBRUKER

Accessor to set the file name (used for reading BRUKER files).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileCOR

Accessor to set the file name (used for reading COR multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileGESigna4X

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects.

setFileName(String) - Method in class gov.nih.mipav.model.file.FileGESigna5X

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects.

setFileName(String) - Method in class gov.nih.mipav.model.file.FileImageXML

Accessor to set the file name (used when reading XML multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the file name.

setFileName(String) - Method in class gov.nih.mipav.model.file.FileInterfile

Sets the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileJP2

Accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileLIFF

Accessor to set the file name (used for reading COR multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileLSM

Accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileMagnetomVision

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects.

setFileName(String) - Method in class gov.nih.mipav.model.file.FileMATLAB

Accessor to set the file name (used for reading COR multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileMicroCat

Sets the file name.

setFileName(String) - Method in class gov.nih.mipav.model.file.FileSTK

Accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileSVS

Accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileTiff

Accessor to set the file name (used when reading TIFF multiFile).

setFileName(String) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the file name to write out.

setFileName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the file name.

setFileName(String, FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicom

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects based on the new image file based on the new filename and the old directory.

setFileName(String, String, FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicom

Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects based on the new image file based on the new filename and the new directory.

setFileNames(Vector<String>) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setFileOutput(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

setFilePath(String) - Method in class gov.nih.mipav.view.dialogs.ScriptTreeNode

setFileSize(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFileSuffix(String) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the file suffix.

setFileTempDir(String) - Static method in class gov.nih.mipav.view.Preferences

Sets the temporary directory which is used for files which will be deleted.

setFileType(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the file type (analyze, raw, TIFF, DICOM, etc.).

setFileXDim(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

setFillHoles(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the fill holes parameter.

setFillValue(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Set value for out of bounds transformation values.

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set intensity value for out of bounds data

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Accessor to set intensity value for out of bounds data

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set intensity value for out of bounds data

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set intensity value for out of bounds data

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the fillValue.

setFillValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the fill value.

setFillValues(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Accessor that sets the fill value.

setFilterExposureTimeX(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setFilterFluorophoreX(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setFilterGaussianStdDev(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the filter's gaussian standard deviation.

setFilterIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set the number of filter iterations.

setFilterLength(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

Accessor that sets the filter length.

setFilterName(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setfilterOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Accessor that sets the butterworth order.

setfilterOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

Accessor that sets the butterworth order.

setfilterOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the butterworth order.

setfilterOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the butterworth order.

setfilterOrder(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

Accessor that sets the butterworth order.

setFilterRefDocumentRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

DOCUMENT ME!

setFilterRefFilterID(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

DOCUMENT ME!

setFilterSet(String, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter

DOCUMENT ME!

setFilterTurretArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setFilterType(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Accessor that sets the filter type (LOWPASS, HIGHPASS, BANDPASS, BANDSTOP).

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

Accessor that sets the filter type (LOWPASS, HIGHPASS, BANDPASS, BANDSTOP).

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the filter type (LOWPASS, HIGHPASS, BANDPASS, BANDSTOP).

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the filter type (LOWPASS, HIGHPASS, BANDPASS, BANDSTOP).

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

Accessor that sets the filter type (LOWPASS, HIGHPASS, BANDPASS, BANDSTOP).

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

setFilterType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

setFilterType(int) - Method in class gov.nih.mipav.view.ViewOpenFileUI

Set the current filter type to the given parameter.

setFilterType(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set filterType.

setFind() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Called when the Find Face button is pressed. the algorithm computes the face region of the volume and sets the displayed image to be that region.

setFineRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the fine sample rate.

setFineRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the fine sample rate.

setFineRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the fine sample rate.

setFineRate(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the fine sample rate.

setFineRateX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the fine sample rateX.

setFineRateY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the fine sample rateY.

setFineRateZ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the fine sample rateZ.

setFinishNotification(JDialogAnonymizeDirectory) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

no real need for complete listener capabilities, so this is to take its place.

setFirstAlgorithm(int, int, int) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration

setFirstName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setFirstName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter

DOCUMENT ME!

setFirstPoint(boolean, boolean, String, String) - Method in class gov.nih.mipav.model.structures.VOIPoint

Parameters for drawing each point in the PolyLineSlice object.

setFirstPoint(boolean, boolean, String, String, int) - Method in class gov.nih.mipav.model.structures.VOIPoint

Parameters for drawing each point in the PolyLineSlice object.

setFirstPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the first mid-sag marker for orig to ACPC transformation in dataset ordering.

setFirstPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Sets first label based on the point.

setFirstSliceAfterBleach(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setfirstSliceNum(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

Accessor to set firstSliceNum.

setFitFunctionVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setFitFunctionVisible - accessor that tells whether to show the fitted function.

setFittedFunctionsVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that tells whether to show the gridlines.

setFittedFuncts(ViewJComponentFunct[]) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets the fitted functions for this graph.

setFittingLevels(int) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

setFixed(boolean) - Method in class gov.nih.mipav.model.structures.VOI

Sets whether or not the VOI is fixed.

setFixed(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets flag to indicate whether or not VOI is fixed.

setFlags(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

SetFlags(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setFlipAngle(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setFlipAngle(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setFlipAngle(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setFlipAngle(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setFlipAngle(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setFloat(int, float) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a float value for the specified tag.

setFloat(int, float) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setFloat(int, float) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the float data in float format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the float value in unsigned short format.

setFloat(int, float) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the float value in unsigned short format.

setFloatArray(int, float[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a float[] (array) for the specified tag.

setFloatArray(int, float[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setFloatArray(int, float[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setFloatProperty(Properties, String, float) - Method in class gov.nih.mipav.model.structures.TransMatrix

setFloatToShort(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

setFloodCorrected(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setFloodValue(short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Sets the value to be placed in the flood region.

setFluor(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setFlyEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Enable manual snapshot buttons.

setFlyEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Sets the elements associated with "fly" behavior to be enabled or disabled, depending on flag.

setFlythruColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set the flythru surface color.

setFlythruRender(FlythruRender) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Set the flythru render reference.

setFmriStatusIndication(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setFNumber(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

setFocalLength(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

setFocalLength35(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

setFocalRatio(float) - Method in class gov.nih.mipav.model.file.FileInfoFits

setFocusCalibrated(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFocusDepth(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFocusPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setFocusPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setFocusPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setFont(String, Font) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Method to append text to an attached JTextArea (not DEBUG or DATA areas).

setFontDescriptors(int) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the font's descriptors.

setFontName(String) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the name (type) of the font.

setFonts(Component[]) - Static method in class gov.nih.mipav.view.MipavUtil

DOCUMENT ME!

setFontSize(int) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the size of the font.

setForceInPlace(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the dialogs to only replace the image (no new frame)

setForceQuiet(boolean) - Static method in class gov.nih.mipav.view.MipavUtil

Sets whether all MIPAV error/warning/info messages should be suppressed (used to skip vm heap max size/plist warning on startup).

setFormat(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText

Sets the editor kit that renders the dialog's text area to the type given.

setForwardArrowEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A convenience method to set the to-list-B buttons (both selected and all) to the given enabled status.

setForwardArrowEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A convenience method to set the to-tree-B buttons (both selected and all) to the given enabled status.

setForwardArrowVisible(boolean) - Method in class gov.nih.mipav.view.JPanelListController

A convenience method to set the to-list-B buttons (both selected and all) to the given visible status.

setForwardArrowVisible(boolean) - Method in class gov.nih.mipav.view.JPanelTreeController

A convenience method to set the to-tree-B buttons (both selected and all) to the given visible status.

setFOV(float) - Method in class gov.nih.mipav.model.file.FileInfoCOR

Accessor to set the field of vision.

setFOV(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setFOVCOlumn(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setFOVRow(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setFractionalEffectiveEcho(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

SetFrame(Frame) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

SetFrame(JFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

setFrameControls(ViewControlsImage) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the frameControls.

setFrameGroupImages(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setFrameGroupNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setFrameRate(double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI

Accessor that sets the frame rate.

setFrameRate(double) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI

Accessor that sets the frame rate.

setFrameSize(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Initialize the sculpt region size.

setFrameSize(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

Initialize the sculpt region size.

setFramesPerSecond(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets the slider value (for invoking save image from dialog).

setFramesPerSecond(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Sets the slider value (for invoking save image from dialog).

setFramingMethod(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setFreeRangeMode(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Accessor that sets freeRangeMode.

setFreq1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the frequency 1 variable.

setFreq1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the frequency 1 variable.

setFreq1(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setFreq1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets the frequency 1 variable.

setFreq2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the frequency 2 variable.

setFreq2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the frequency 2 variable.

setFreq2(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setFreqDim(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setFreqU(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setFreqU(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the prerotation horizontal frequency variable.

setFrequencyMHz(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setFreqV(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setFreqV(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the prerotation vertical frequency variable.

setFromOrigin(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

setFromString(String, String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options

DOCUMENT ME!

setFront(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the front value.

setFront(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the front value.

SetFrontface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Sets front-face culling on/off.

setFullDepth(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

setFullScreenModeLocation(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

SetFuncEvalBase(CDOptimizeFuncBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

set point to func eval. base.

setFunctionData(PPolynomial, int, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setFunctionsVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that tells whether to show the functions.

setFunctionVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setFunctionVisible - accessor that tells whether to show the function.

setFunctName(int) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setFunctName - sets the names of the functions to default names (function + number).

setFunctName(String) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setFunctName - sets the names of the functons.

setFuncts(ViewJComponentFunct[]) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets the function for this graph.

setFuncType(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the function type.

setFunused1(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the start locations in the x-axis in fileInfoBase.

setFunused1(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the start locations in the x-axis in fileInfoBase.

setFunused2(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the start locations in the y-axis in fileInfoBase.

setFunused2(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the start locations in the y-axis in fileInfoBase.

setFunused3(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the start locations in the z-axis in fileInfoBase.

setFunused3(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the start locations in the z-axis in fileInfoBase.

setFuzzyThreshold(float) - Method in interface gov.nih.mipav.view.PaintGrowListener

Set the fuzzy threshold value.

setFuzzyThreshold(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether fuzzy connectedness is used and the fuzzy threshold.

setfv(Vector<Integer>, Vector<Double>, int[], int[]) - Method in class gov.nih.mipav.model.file.FileMATLAB

setG(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets green channel value of this Pixel.

SetG(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

setG_fromDouble(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

setG_fromDouble(double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the green value of this pixel at its current position with 0.0 as no green contribution and 1.0 as full green contribution.

setGain(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setGain(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

setGamma(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setGamma(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setGamma(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake

setGamma(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

setGamma(float) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setGamma(float) - Method in class gov.nih.mipav.view.ColorWheel

setGamma(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the gamma correction.

setGamma(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setGamma(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets T20, T21, and T22 in the transformation matrix.

setGammaArray(Vector3f[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of T20, T21, and T22 in the transformation matrix.

setGammaHalflife(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setGammaValue(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setGapArray(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of gap values for plane gap not equal to -1.

setGatedFrameMode(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setGatedStudyGeneral(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setGatingType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setGatingType2(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setGaussians(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setGaussianScale(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Accessor that sets the gaussian scale.

setGaussianSigma(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setGaussianStdDev(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

setGBC(int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

A helper method for adding a component using GridBagLayout, so we don't have to set up the x, y, width, and height over and over again.

setGBC(int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

A helper method for adding a component using GridBagLayout, so we don't have to set up the x, y, width, and height over and over again.

setGBC(GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

A helper method for adding a component using GridBagLayout, so we don't have to set up the x, y, width, and height over and over again.

setGeneralData(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setGeneralImageData(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setGeneralInfoList(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setGenerated(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the generated string.

setGenerated(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows a maximum of 10 characters to set the generated string.

setGenerated(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows a maximum of 10 characters to set the generated string.

setGenerateOutputImage(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setGenerator(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record

Set the generator for the heap record.

setGenerator(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Support for regenerating an ModelTriangleMesh from an ModelClodMesh whenever the level of detail is changed for the ModelClodMesh.

setGenericName(String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

sets the genericname, and the start sequence to use when generating the anonymousname.

setGeod(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

setGeodesic(TriMesh, PickRecord) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Passes the picked point to the Geodesic object for calculating the geodesic curve on the TriMesh surface.

setGeodesicGroup(Group) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Access function to set the Group object m_kGeodesicGroup.

setGeodesicSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

setGeodesicSmooth(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Displays the Geodesic (smoothed) distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setGeodesicSmooth(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Displays the Geodesic (smoothed) distance between the last two points picked in the Geodesic class, as well as the running total for the current curve.

setGLmax(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets glmax. if supplied value is less than glmin, the glmin gets reset to the supplied value as well, so that glmin is still no greater than glmax.

setGLmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets glmax. if supplied value is less than glmin, the glmin gets reset to the supplied value as well, so that glmin is still no greater than glmax.

setGLmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets glmax. if supplied value is less than glmin, the glmin gets reset to the supplied value as well, so that glmin is still no greater than glmax.

setGLmin(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets glmin. if supplied value is greater than glmax, the glmax gets reset to the supplied value as well, so that glmax is still no less than glmin.

setGLmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets glmin. if supplied value is greater than glmax, the glmax gets reset to the supplied value as well, so that glmax is still no less than glmin.

setGLmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets glmin. if supplied value is greater than glmax, the glmax gets reset to the supplied value as well, so that glmax is still no less than glmin.

setGlobalAlphaMultiplier(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

Sets the global alpha multiplier parameter of this ContourPlot.Triangles object.

setGlobalAlphaMultiplier(DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

Sets the global alpha multiplier parameter of this ContourPlot.Triangles object.

setGlobalCRC(int) - Method in class gov.nih.mipav.model.file.CRC

setGlobalDataText(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Accessor to set text of global data FRAME.

SetGlobalState(int, Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setGlobalThicknessMultiplier(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

Sets the line thickness multiplier for this ContourPlot.Lines object in pixels.

setGlobalThicknessMultiplier(DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

Sets the line thickness multiplier for this ContourPlot.Lines object in pixels.

setgmax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

setgmax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

setgmid(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Accessor that sets the gmid.

setgmin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

setgmin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

setGOn(boolean) - Method in class gov.nih.mipav.model.structures.ModelRGB

Sets if the green channel to the boolean value.

setGPUCost(ImageRegistrationGPU) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

setGPUCost(ImageRegistrationGPU) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

setGradientDirectionThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

setGradientEpsilon(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the gradient magnitude epsilon value.

SetGradientErrorDetected(String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingIterationCallback

setGradientMagnitude(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turn the gradient magnitude filter on/off for volume shaders.

setGradientMagnitude(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enables/Disables Gradient Magnitude filter.

SetGradientMagnitude(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Enables/Disables Gradient Magnitude filter.

SetGradientMagnitude(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Enables/Disables gradient magnitude filter.

SetGradientMagnitude(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetGradientMagnitude(ModelImage, boolean, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Called when the user selects the Gradient Magnitude option or the Multi-Histogram option in the Volume Renderer.

setGradientMagnitudeOpacityEnabled(boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

Return whether or not the opacity mapping based on gradient magnitude is enabled.

setGradientMagnitudeOpacityEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Return whether or not the opacity mapping based on gradient magnitude is enabled.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientMagnitudeScale(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3

Set the scale to use in computing the blurred gradient magnitude of the curvature flow image.

setGradientOrientationNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setGradientPath(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

setGradients(double[][]) - Method in class gov.nih.mipav.model.file.DTIParameters

setGradientWeight(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

setGraph(Graph) - Method in class gov.nih.mipav.view.graphVisualization.MipavSAXReader

Sets the Graph.

setGraphCheckBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set graphCheckBox.

setGraphCheckBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set graphCheckBox.

setGraphicallyPrescribed(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setGraphVisible() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setGreaterEqualValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur

Sets the flag for the green channel.

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep

Sets the flag for the green channel.

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude

Sets the flag for the green channel.

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

Sets the flag for the green channel.

setGreen(boolean) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

Sets the flag for the green channel.

setGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

setGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Accessor that sets the color flag.

setGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the color flag.

setGreen(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the green value.

setGreen(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setGreen1(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setGreen2(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setGreenArray(int[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setGreenBlackLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreenChannelNumber(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreenFunction(TransferFunction) - Method in class gov.nih.mipav.model.structures.ModelRGB

Accessor that returns the green transfer function.

setGreenGamma(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreenImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

Accessor that sets the Green Image Source.

setGreenImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets the Green Image Source.

setGreenOn(boolean) - Method in class gov.nih.mipav.view.JPanelHistogram

Sets the green checkbox on/off.

setGreenOn(boolean, boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets the green flag to be on or off.

setGreenOn(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

setGreenProcessingRequested(boolean) - Method in class gov.nih.mipav.view.components.JPanelColorChannels

Changes whether the green channel of the input image should be processed.

setGreenVector(long) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

setGreenWhiteLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreyBlackLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreyChannelNumber(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreyColorMap(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreyGamma(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGreyLevels(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets the number of grey levels if rescaling used

setGreyLevels(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets the number of grey levels if rescaling used

setGreyWhiteLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setGridColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the background color of the panel that is in the scrollpane.

setGridColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

set the color of the grid.

setGridColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the background color of the panel that is in the scrollpane.

setGridColumn(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This method is called when there is a change to the light box column number--in the limiting case.

setGridColumn(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method is called when there is a change to the light box column number--in the limiting case.

setGridLabelingOn(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Tells the grid overlay (if on) to show abc/123 labeling.

setGridLabelOrientation(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the axis orientation of abc and 123 labeling of the grid overlay.

setGridlinesVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that tells whether to show the gridlines.

setGridOverlay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether or not to show the NEI grid overlay.

setGridRow(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method is called when there is a change to the light box row number--in the limiting case.

setGridSpacing(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the distance between adjacent images. verifies that the width value is within bounds.

setGridSpacing(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the distance between adjacent images. verifies that the width value is within bounds.

setGridSpacingX(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

sets the grid spacing (horizontal) in terms of resolution.

setGridSpacingY(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

sets the grid spacing (horizontal) in terms of resolution.

setGroup(int) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the Group of this DICOM tag as read in by FileDicom.

setGroup(VOI) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the VOI object that contains this contour.

setGrouping(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

setGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset

DOCUMENT ME!

setGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Project

DOCUMENT ME!

setGrowDialog(RegionGrowDialog) - Method in interface gov.nih.mipav.view.PaintGrowListener

Sets the JDialogPaintGrow for this class (usually used to set it to null).

setGrowDialog(RegionGrowDialog) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the RegionGrowDialog for this class (usually used to set it to null).

setGUI() - Method in class gov.nih.mipav.view.ViewFileChooserBase

Creates GUI for this accessory.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Used by the JPanelMouse the redisplay the recorded actions.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Used by the JPanelMouse the redisplay the recorded actions.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Sets the GUI components to their proper state before the action is dispatched from the player.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the GUI components to their proper state before the action is dispatched from the player.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the GUI components to their proper state before the action is dispatched from the player.

setGUI(Object) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the GUI components to their proper state before the action is dispatched from the player.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator

set gui

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D

set gui

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D

set gui

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

set GUI...for scripting

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

set gui from parameters

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

set gui from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI

Used in turning the plugin into a script

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

set GUI from params

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

Set up the dialog GUI based on the parameters before running the algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGUIFromParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

setGUIFromParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

setGUIFromParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

setGUIFromParams() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

setGzip(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

setH(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Accessor to set the height value of the painted rectangle.

sethalfedge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Face

sethalfedge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

sethalfedge0(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

sethalfedge1(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

setHardThresholdUI(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod

setHasEqual(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setHasGreaterEqual(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setHashtable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

hash table holding set information.

setHasImageMinMaxDimOrder(boolean) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

setHasInfinity(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setHasLesserEqual(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setHasNaN(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setHasThreshold1(boolean) - Method in class gov.nih.mipav.view.PatientSlice

Sets the hasThreshold1 for setPaintBuffers.

setHasThreshold1(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the hasThreshold1 for setPaintBuffers.

setHasThreshold2(boolean) - Method in class gov.nih.mipav.view.PatientSlice

Sets the hasThreshold2 for setPaintBuffers.

setHasThreshold2(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the hasThreshold2 for setPaintBuffers.

setHaveDcmMeta(boolean) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setHaveWindowed(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setHaveZResol(boolean) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

Accessor to set the flag for having a z resolution.

setHdrSize(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

sethe_next(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

sethe_prev(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

setHeaderConfiguration(JTable) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

setHeaderFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME

Sets the name of the header file.

setHeaderOnlyRead(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets whether this Dicom read is only interested in the header tags and not the image data (if it exists).

setHeaderTextField(String) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setHeapMaxField() - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

setHeight(int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the subject's height.

setHeightDivisions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the height divisions.

setHeightText(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

setHigh(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setHighBit(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setHighBit(int) - Method in class gov.nih.mipav.model.file.FileRaw

setHighBit(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

setHighGain(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets highGain variable.

setHighlightColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Changes the color used to highlight the currently on-top image.

setHighlightColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the color of all the images highlight to the specified color.

setHighThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

setHighTruncated(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Acceessor that sets highTruncated variable.

setHighXmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the highest x location in millimeters.

setHighYmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the highest y location in millimeters.

setHighZmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the highest z location in millimeters.

setHist(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

setHist(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

DOCUMENT ME!

setHist(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setHistogramBins(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets number of histogram bins used in slice directionality calculation

setHistogramInfo(ModelImage, ModelHistogram) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Set up the image, LUT and histogram information.

setHistogramInfo(ModelImage, ModelHistogram) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

Set up the image, LUT and histogram information.

setHistogramPresent(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setHistogramScaleRule(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

permit the user to select the scale on which the algorithm forms the brightness pattern of the histogram.

setHistogramThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets the gradient magnitude threshold reuqired for putting a gradient direction into a histogram bin in the slice directionality calculation

setHistoLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Change the histogram component LUT.

setHistoLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Change the histogram component LUT.

setHistory(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setHistory(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the history string.

setHistory(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setHistoryInfo(ArrayList<String>) - Method in class gov.nih.mipav.model.file.FileInfoVista

setHkey(char) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

setHkey(char) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

DOCUMENT ME!

setHkey(char) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

SetHole() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Sets the point to represent a hole

SetHole(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Sets whether the point belongs to an hole in the model.

setHomogeneity(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if homogeneity operator is calculated.

setHomogeneity(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if homogeneity operator is calculated.

setHorizontalLandmark(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setHospitalName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

SetHostImage(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Returns the host image (if any).

setHostName(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setHuffmanTables(FileSVS.JPEGHuffmanInputStream, FileSVS.JPEGHuffmanInputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setHuffmanTables(FileTiff.JPEGHuffmanInputStream, FileTiff.JPEGHuffmanInputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setHumidity(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setHyperStack(VolumeImage[], Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

setHyperStack(VolumeImage[], Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setI(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

setI(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair

setICAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the icAlgorithm type (SYMMETRIC_ORTHOGONALIZATION, DEFLATIONARY_ORTHOGONALIZATION, or MAXIMUM_LIKELIHOOD_ESTIMATION).

setICNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the number of independent components.

setIcon(Object, boolean) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Sets the pressed or unpressed icon for the button, depending on which type it is.

setIcon(Object, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Sets the pressed or unpressed icon for the button, depending on which type it is.

setIcon(Object, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Sets the pressed or unpressed icon for the button, depending on which type it is.

setIconHeight(int) - Method in class gov.nih.mipav.view.ColorIcon

setIconHeight - sets the height of the icon.

setIconWidth(int) - Method in class gov.nih.mipav.view.ColorIcon

setIconWidth - sets the width of the icon.

setid(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Face

setid(int) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setID(int) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

Set the unique id for the surface:

setID(int) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML

Set the unique id for the surface:

setID(short) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the ID to the parameter.

setID(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setIDCodeDate(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets IDCodeDate.

setIDCodeString(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets IDCodeString.

SetIdentity() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

setIdentityViewOrientation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Reset the view orientation transformation to the identity.

setIdentityViewOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Reset the view orientation transformation to the identity.

setIdentityViewOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

Reset the view orientation transformation to the identity.

setIDType(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

SETIGL(double[], int[], int[], int[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

setIlluminationType(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setIlluminationWavelength(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

Sets the algorithm to new image of boolean type.

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Sets the algorithm to new image of boolean type.

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Sets new source image.

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

Sets the algorithm to new image of boolean type.

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Sets the algorithm to new image of boolean type.

setImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Sets new source image.

setImage(ModelImage) - Method in class gov.nih.mipav.model.file.FilePARREC

setImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the image where the surface is to be extracted.

setImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

setImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

Accessor that sets image A.

setImage(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram

setImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

Set the input diffusion-weighted image (4D image series).

setImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

setImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Change the underlying image for the latticeModel.

setImage(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the ModelImage data

setImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

Set the new imageA and imageB for creating VOIs.

setImage(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Changes the underlying images displayed in the VolumeTriPlanarInteface.

setImage(VolumeImage, VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

setImage2(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

DOCUMENT ME!

setImage2(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

setImage25D(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets a flag to indicate the image has dimensions of (i.e. spacial, spacial, time) and image processing routines should apply 2.5D algorithm.

setImage25D(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the boolean telling if 3D images are processed one slice at a time.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets image25D for single slice processing.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets image25D for single slice processing.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets image25D for single slice processing.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Accessor that sets whether 3D images are 3D or 2.5D filtered.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets whether 3D images are 3D or 2.5D filtered.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the slicing flag.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Process the image in 2.5D.

setImage25D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Accessor that sets the slicing flag.

setImageA(ModelImage) - Method in class gov.nih.mipav.model.file.FileIO

setImageA(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Accessor that sets image A.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Accessor to set imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.PatientSlice

Sets imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Sets component's image A.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets component's Image A.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets component's Image A.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Accessor that sets the reference to imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Sets component's ImageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Accessor that sets the imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Accessor that sets the imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets component's ImageA. assumes dimensionality same as image B's for now.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage

Sets component's image A.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets the imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Accessor that sets the reference to imageA.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Changes imageA to a new model image reference.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Changes imageA to a new model image reference.

setImageA(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Changes imageA to a new model image reference.

setImageActiveInTriComponents(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

setImageAngulation(float[][]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setImageB(ModelImage) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setImageB(ModelImage) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set image b

setImageB(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat

Accessor that sets imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets image B.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Accessor that sets image B.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.PatientSlice

Sets imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets component's Image B.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets component's Image B.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Accessor that sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Sets component's ImageB !!!!!!

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Accessor that sets the imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Accessor that sets the imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set image b

setImageB(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Sets a new imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets component's ImageB. !!!!!!

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets the imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Accessor that sets the imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Accessor that sets the imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Accessor that sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Accessor that sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Accessor that sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the reference to imageB.

setImageB(ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Accessor that sets the reference to imageB.

setImageB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Accessor that sets the reference to imageB.

setImageB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Accessor that sets the reference to imageB.

setImageB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Accessor that sets the reference to imageB.

setImageB(ModelImage, ModelStorageBase) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets the imageB for the LUT interface.

setImageB(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

setImageB(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setImageBAfni(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets image B to an AFNI image, performing the appropriate transformations.

setImageBufferB(float[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets component's Image B data buffer.

setImageBufferB(float[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets component's Image B data buffer.

setImageBufferB(float[]) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets component's ImageB buffer.

setImageColocalize(ModelImage) - Method in class gov.nih.mipav.view.PatientSlice

Sets the colocalize image.

setImageColocalize(ModelImage) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the colocalize image.

setImageComponent(int) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture

Sets the image component3D to import changed slice data.

setImageCreationDate(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageCreationTime(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageCrop(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the image crop flag.

setImageCrop(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the image crop flag.

setImageDataDescription(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageDataFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoXML

Sets the name of the image data file (not the xml header).

setImageDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoBioRad

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoJP2

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoSTK

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoSVS

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoTiff

DOCUMENT ME!

setImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoXML

Sets the image description.

setImageDestinationDirectory(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set imageDestinationDirectory.

setImageDirectory(File) - Static method in class gov.nih.mipav.view.Preferences

Sets the image directory as the latest used image directory.

setImageDirectory(String) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the image directory.

setImagedNucleus(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImagedNucleus(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setImageDuration(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageDuration(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageExtents() - Method in class gov.nih.mipav.view.PatientSlice

setImageExtents(int[]) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

setImageFieldStrength(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageFile(RandomAccessFile) - Method in class gov.nih.mipav.model.file.FilePackBit

Sets the image file.

setImageFile(RandomAccessFile, FileInfoBase) - Method in class gov.nih.mipav.model.file.FileRawChunk

Sets the classes file handle to the past in the method.

setImageFile(String, String, FileInfoBase, int) - Method in class gov.nih.mipav.model.file.FileRaw

Sets the name and directory to new values opens the file.

setImageFileName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

setImageHeaderBlocks(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageHeaderCreatorProcess(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageHeaderCreatorTask(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageHeaderDisclaimer(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageHeaderID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageHeaderRevisionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageInfoList(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setImageLocation(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageMatrix(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageMemoryUsage(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setImageModality(int) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the image type (MRI, CT, ...).

setImageMode(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setImageName(String) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that sets the name of the image.

setImageName(String) - Method in class gov.nih.mipav.view.dialogs.ScriptImage

setImageName(String, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that sets the name of the image.

setImageNameArray(String[]) - Method in class gov.nih.mipav.model.structures.ModelImage

Accesor to set imageNameArray

setImageNamePrivate(String) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that sets the name of the image.

setImageNew(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the ModelImage to use as an alternative to the volume ModelImage for surface texturing.

SetImageNew(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Set the user-specified ModelImage to use as the surface texture.

SetImageNew(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets alternate volume data for texture mapping.

SetImageNew(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets the ModelImage to use as an alternative to the volume ModelImage for surface texturing.

SetImageNew(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the ModelImage to use as an alternative to the volume ModelImage for surface texturing.

setImageNode(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the image node (includes image info and data)

setImageNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageOffcentre(float[][]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setImageOffset(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageOn(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

setImageOn(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

SetImageOn(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

setImageOrder(int) - Method in class gov.nih.mipav.model.structures.ModelImage

For multiple image viewers this indicates order of the image.

setImageOrientation(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the image orientation.

setImageOrientation(int) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the image orientation (sagittal, axial, ...).

setImageOrientationPatient(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setImageOriginal(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set the reference to the original image we passed into the renderer from MIPAV (non-cloned).

setImagePositionPatient(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setImageRatio(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Sets the number of iterations.

setImageRatio(float) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Sets the image influence ratio.

setImageRawDataSystemID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageRelativeStartTime(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageRelativeStartTime(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageRelativeTime0(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setImageRelativeTime1(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setImageRelativeTime2(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setImageRelativeTime3(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setImages(ModelImage, ModelImage, ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

setImages(ModelImage, ModelImage, ModelStorageBase, ModelStorageBase) - Method in class gov.nih.mipav.view.JFrameHistogram

setImages(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure

Setup the measure to use information from the target image and the original source image.

setImages(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio

Setup the measure to use information from the target image and the original source image.

setImages(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares

Setup the measure to use information from the target image and the original source image.

setImages(ModelSimpleImage, ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation

Setup the measure to use information from the target image and the original source image.

setImages(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setImagesAllocated(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageSelectorPanelVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

this method either shows or hides the image selector panel, based on the value of the parameter.

setImageShape(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImagesInfo(ArrayList<HashMap<String, String>>) - Method in class gov.nih.mipav.model.file.FileInfoVista

SetImageSize(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

SetImageSize(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

setImageSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Set the image slice number, and recording the action as slider changes on single eye tracker viewer.

setImageSpacing(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImagesPerCardiacCycle(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImagesPerEWindow(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImagesPerEWindowBrief(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageStartTime(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImageSystemGenerationID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageTable(ImageVariableTable) - Method in class gov.nih.mipav.model.scripting.ScriptRunner

Changes the image variable table for the current script execution.

setImageTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setImageType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImageType(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setImageTypeEDES(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setImageTypeMR(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setImaginaryValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Accessor that sets the imaginaryValue or green value to be used when performing the algorithm.

setImagingFrequency(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setImagingModality(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setImg(ModelImage) - Method in class gov.nih.mipav.model.file.FileHistoLUT

setImgBLHC_A(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgBLHC_R(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgBLHC_S(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgExtents(int[]) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setImgModality(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setImgOrientation(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setImgResolution(float[]) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setImgSize(int, int) - Method in class gov.nih.mipav.model.file.FileImageXML.Thumbnail

Sets the image size based on the panel that is displaying it (its parent).

setImgSize(int, int) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage

Sets the size of the image to be painted.

setImgTLHC_A(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgTLHC_R(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgTLHC_S(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgTRHC_A(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgTRHC_R(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgTRHC_S(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setImgType(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

setImgType(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setImportantImageInfo() - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets necessary image information.

setIn(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.IntFilterInputStream

setIn(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.IntFilterInputStream

setIncludeString(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Include

DOCUMENT ME!

setIncomingEndianess(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Sets the endianess for the incoming data.

setIncrement(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the increment between displayed slices

setIndeterminate(boolean) - Method in class gov.nih.mipav.view.ViewJProgressBar

Enable or disable the progress bar indeterminate mode.

setIndex(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets the index of the Img value this Pixel references.

setIndex(int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the index of this pixel and thus its position.

setIndex(int) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record

Set the index of the heap record within the records array.

setIndex(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable

Sets index to parameter.

setIndex(int) - Method in class gov.nih.mipav.model.structures.PointStack

Sets the pointer to specific location return -1 if index exceeds location of valid data.

setIndexNestingLevel(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setIndexStructure(StaticGrid) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

setIndices(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

setInferiorEdge(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the PC superior edge marker for orig to ACPC transformation in dataset ordering.

setInferiorEdge(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Sets inferior label based on the point.

setInferiorPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most inferior point marker for +acpc to +tlrc transformation in dicom ordering.

setInferiorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets inferior label based on the point.

setInferiorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets inferior label based on the point.

setInfoFromTag(FileDicomTag) - Method in class gov.nih.mipav.model.file.FileInfoDicom

Sets fields in this file info based on a given tag's key and value.

setInfoFromTags() - Method in class gov.nih.mipav.model.file.FileInfoDicom

Public method for populating ModelImage data fields.

setInfoFromTags(FileDicomTagTable, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom

After the tag table is filled, check for a number of tags to set up some fields in this file info object.

setInfoNode(DefaultMutableTreeNode) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the information node (includes dicom tags and patient info

setIniter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setIniter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setInitialGlobalSmoothing(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setInitialInfo() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

this method sets initial info about the study.

setInitialKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setInitialPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Sets the initial point to the value passed in.

setInitialPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D

Sets the initial point to the value passed in.

setInitialPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Sets the initial point to the value passed in.

setInMenu(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

setInPlanePhaseEncodingDirection(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setInput(byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity

Specify the input volume to use for rendering.

setInput(byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR

Specify the input volume to use for rendering.

setInput(byte[], byte[]) - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceIntensity

Specify the input volume to use for rendering.

setInput(byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity

Specify the input volume to use for rendering.

setInput(byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceColor

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR

Specify the input volume to use for rendering.

setInput(byte[], byte[], byte[], byte[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP

Specify the input volume to use for rendering.

setInput(ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setInput(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork

setInputImage(ModelImage) - Method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase

Changes the image whose processing should be recorded in the script.

setInputImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

setInputImage2(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

inputImage2 is not used to determine the registration, but each slice of inputImage2 undergoes the same transformation as inputImage.

setInputImage2(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

inputImage2 is not used to determine the registration, but each slice of inputImage2 undergoes the same transformation as inputImage.

setInputImage3(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

inputImage3 is not used to determine the registration, but each slice of inputImage3 undergoes the same transformation as inputImage.

setInputImage3(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

inputImage3 is not used to determine the registration, but each slice of inputImage3 undergoes the same transformation as inputImage.

setInputMap(RendererMapColor) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColor

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapColor) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapColor) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapColor) - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceColor

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapColor) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapColor) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP

Specify the lookup table to use for mapping input RGB colors to intensity.

setInputMap(RendererMapIntensity) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensity

Specify the lookup table to use for mapping input intensity values to colors.

setInputMap(RendererMapIntensity) - Method in interface gov.nih.mipav.view.renderer.J3D.volumeview.RendererInterfaceIntensity

Specify the lookup table to use for mapping input intensity values to colors.

setInputMap(RendererMapIntensity) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity

Specify the lookup table to use for mapping input intensity values to colors.

setInputRangeMax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the maximum input range to the parameter.

setInputRangeMax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the maximum input range to the parameter.

setInputRangeMin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the minimum input range to the parameter.

setInputRangeMin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the minimum input range to the parameter.

setInputStream(FileSVS.JPEGBitInputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream

setInputStream(FileTiff.JPEGBitInputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream

setInputWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the input weight image.

setInputWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the input weight image.

setInputWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the input weight image.

setInputWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the input weight image.

setInputWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the input weight image.

setInputWgtImage(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

Sets the input weight image.

setInputWgtImage(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

Sets the input weight image.

setInsertBlank(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Accessor which lets you change the type of slice to be inserted.

setInsertedImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Accessor to specify the 2D image used as an inserted slice for ORGINAL_SLICE.

setInsertedImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

Accessor to specify the 2D image used as an inserted volume for ORGINAL_VOLUME.

setInsertSliceNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Accessor which lets you change where to insert the slice.

setInsertVolumeNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

Accessor which lets you change where to insert the volume.

setInstanceCreationTime(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setInstanceNumber(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setInstanceTitle(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata

setInstitution(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setInstitution(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter

DOCUMENT ME!

setInstitutionName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setInstrument(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setInstrumentRef(Integer, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setInt(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets an int value for the specified tag.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the int data in float format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the int value in unsigned short format.

setInt(int, int) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the int value in unsigned short format.

setInt16(int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object

Sets an integer (16 bit) value in a DICOM object.

setInt16s(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt16s(int, int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt16sArray(int, short[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt16sArray(int, short[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt16u(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt16u(int, int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt16uArray(int, int[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt16uArray(int, int[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt32(MetadataExtractor.Directory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader

setInt32s(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt32s(int, int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt32sArray(int, int[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt32sArray(int, int[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt32u(int, long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt32u(int, long) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt32uArray(int, long[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt32uArray(int, long[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt64(MetadataExtractor.Directory, int, MetadataExtractor.RandomAccessReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.IccReader

setInt8s(int, byte) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt8s(int, byte) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt8sArray(int, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt8sArray(int, byte[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt8u(int, short) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt8u(int, short) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setInt8uArray(int, short[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setInt8uArray(int, short[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setIntArray(int, int[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets an int[] (array) for the specified tag.

setIntegerDistanceRound(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

If true, the rounding of the Euclidean distance is taken as the distance If false, the Euclidean distance is taken as the distance

setIntensity(float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the intensity of the light which sets the actual color of the light to this factor times the base color of the light.

setIntensityAverage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets whether intensity averaging is performed to determine which which channels should be used in calculating the gray.

setIntensityDropper(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the intensityDropper intensity.

setIntensityDropper(float) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets paint intensity in axial image.

setIntensityLevel(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setIntensityPaintName(float) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets integer value on intensityPaintButton.

setIntensityPaintName(String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that sets the intensity paint name (that is, the text of the intensity spinner).

setIntenstityLevel(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set intensity level for GPU-based surface extraction.

setIntentCode(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Accessor that sets the stat code.

setIntentName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setIntentP1(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Accessor that sets first statistical parameter.

setIntentP2(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Accessor that sets second statistical parameter.

setIntentP3(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Accessor that sets third statistical parameter.

setInterface(VOILatticeManagerInterface) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager

SetInterface(JInterfaceBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the parent container panel:

setInterfileDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setInterImageDelay(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setInterleaved(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

setInternalNodes(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setInterp() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Document ME.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the initial interpolation.

setInterp(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the interpolation method.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the final interpolation.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set the final interpolation.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the final interpolation.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the final interpolation.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the final interpolation.

setInterp2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the final interpolation.

setInterpMode(int) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Sets the interpolation mode.

setInterpolate(boolean) - Method in class gov.nih.mipav.view.PatientSlice

Sets the export flag for displaying diagonal to use TriLinear interpolation of the volume data.

setInterpolationMode(int) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the interpolation mode.

setInterpolationMode(Preferences.InterpolateDisplay) - Static method in class gov.nih.mipav.view.Preferences

Sets the display interpolation mode for 2D image display.

setIntProperty(Properties, String, int) - Method in class gov.nih.mipav.model.structures.TransMatrix

setInvariant(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if spatially invariant offset direction is performed.

setInvariant(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if spatially invariant offset direction is performed.

setInverseOrder1(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if the inverse difference moment of order 1 operator is called.

setInverseOrder1(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if the inverse difference moment of order 1 operator is called.

setInversionDelay(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setInversionTime(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

Accessor to set the inversion time of the scan

setInvert(boolean) - Method in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream

setInvert(boolean) - Method in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream

setInvertXStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setInvertYStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setInvertZStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setInvestigatorName(String, int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Create a new investigator using his/her name.

setInvestigators(FileInfoImageXML.Investigator[]) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the array (3) of Investigator data.

setInvestigatorsComplete(boolean[]) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the array (3) of booleans that tell whether the investigator data for that index is complete.

setIPD(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the inter-pupillary distance for stereo rendering.

setIPD(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the inter-pupillary distance for stereo rendering.

setIs2D(boolean) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setIsAVI(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setIsClodMesh(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the clod mesh flag.

setIsEnhancedDicom(boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom

setIsNIFTI(boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix

Accessor that sets whether or not the matrix is a NIFTI matrix.

setIsNIFTI(boolean) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Accessor that sets whether or not the matrix is a NIFTI matrix.

setIsOrderedVariable(Vector<Boolean>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data

setIsOrderedVariableString(Vector<String>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data

setISOSpeedRating(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

SetIsoSurfaceCorners(float, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setIsotopeName(String, String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setIsotopeNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

SetIsoVal(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

setIspg(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setIsQform(boolean) - Method in class gov.nih.mipav.model.structures.TransMatrix

Accessor that sets whether a nifti matrix is a qform matrix or a sform matrix.

setIsQform(boolean) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Accessor that sets whether a nifti matrix is a qform matrix or a sform matrix.

setIsScript(boolean) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setIsScript(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the options to be run in a script.

setIsScript(boolean) - Method in class gov.nih.mipav.model.scripting.actions.ActionBase

setItemListeners() - Method in class gov.nih.mipav.view.JPanelEditTime

gets the internal components to listen to themselves for panel self-verification.

setIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Sets the number of iterations.

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Accessor that sets the iterations variable.

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Sets the number of iterations.

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Accessor that sets the iterations variable.

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

setIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

setIterations(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

Sets number of iterations for closing or opening.

setIterations(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Sets number of iterations for closing or opening.

setIterations(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

Sets number of iterations for closing or opening.

setIterations(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Sets number of iterations for closing or opening.

SetIterations1stPass(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the number of iterations in the coarse search.

setIterations2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

SetIterations2ndPass(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the number of iterations in the refinement search.

setIterativeGlobalSmoothing(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setIterativeGlobalSmoothing2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setIterativeKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the number of iterations.

setIters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

Accessor that sets the number of iterations.

setItr(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

SetIWork(int, int, int, int[], int[][], int[][], int[][], int[][], int[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

setJ(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

setJ(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair

SetJacobianOffset(int, Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction

setJarClassLoader(JarClassLoader) - Method in class gov.nih.mipav.view.ViewUserInterface

setJavaVersion(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setJobName(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setJPEGQuality(Player, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

Setting the encoding quality to the specified value on the JPEG encoder. 0.5 is a good default.

setJTEM(boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setJTEM(boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setJTEM(boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Turns the full version of Powell's algorithm on/off.

setJTEM(boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Turns the full version of Powell's algorithm on/off.

setJunctionNeighbours(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

setJustEllipse(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Accessor that sets whether of not initial ellipsoid result is displayed.

setJustIntial(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Indicates if surface evolution should be skipped.

setJustIntialEllipsoid(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Indicates if surface evolution should be skipped.

setK(float) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Accessor that sets the k value.

setKernel() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Fill in the mask for which pixels are used in filtering.

setKernel() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Fill in the mask for which pixels are used in filtering.

setKernel(double) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the kernel.

setKernel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the kernel.

setKernel(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

Sets user defined square kernels.

setKernel(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Sets user defined square kernels.

setKernel(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

Sets user defined square kernels.

setKernel(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Sets user defined square kernels.

setKernel(BitSet, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Sets user defined square kernels.

setKernel(BitSet, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Sets user defined square kernels.

setKernelMask() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

Fill in the mask for which pixels are used in filtering.

setKernelShape(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the kernel shape.

setKernelShape(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the kernel shape.

setKernelShape(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Accessor that sets the kernel shape.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Accessor that sets the kernel size.

setKernelSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Accessor that sets the kernel size.

setKernelSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel

Accessor that sets the kernel size.

setKernelType(int) - Method in class gov.nih.mipav.model.GaussianKernelFactory

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Accessor that sets the kernel type to use.

setKernelType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Accessor that sets the kernel type to use.

setKey(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

setKey(int) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block

setKey(FileDicomKey) - Method in class gov.nih.mipav.model.file.FileDicomTagInfo

Sets the dicom tag's key.

setKey(Object) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

setKey(String) - Method in class gov.nih.mipav.model.file.FileDicomKey

Sets the unique identifier.

setKeysDate(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setKeysVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setKeywords(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setKnotX(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

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setKnotY(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setKSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets the Neighbor window size.

setL(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

Accessor that sets neighborhood size for the directional gradient averaging.

setL1Distance(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

setLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay

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setLabel(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setLabel(String) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the label of the VOI.

setLabel(String[]) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setLabel1(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets label1.

setLabel2(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets label2.

setLabels(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setLabels(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting labelString for axis names

setLabels(String, String) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets the labels for the x and y axis to these strings.

setLabels(String, String) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Sets the axis labels.

setLabelType(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setLabelVisible(boolean) - Method in class gov.nih.mipav.view.graphVisualization.MipavEdgeRenderer

setLabelXY() - Method in class gov.nih.mipav.view.ViewJComponentAnimate

For 4D sets the numbering string of each z slice and its x and y positions.

setLabelXY() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

For 4D sets the numbering string of each z slice and its x and y positions.

setLabelY(String) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets the y axis label to yStr

setLabelY(String) - Method in class gov.nih.mipav.view.ViewJFrameGraph

setLabelZ() - Method in class gov.nih.mipav.view.ViewJComponentAnimate

setlabelZ - For 3D sets the numbering string of each frame.

setLabelZ() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

setlabelZ - For 3D sets the numbering string of each frame.

setLambda(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setLambda(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setLambdaEm(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setLambdaEx(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setLandmarkCounter(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setLaplacianWeight(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the Laplacian weight 'd'.

SetLaplacianWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setLargestImagePixelValue(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setLaser(String, String, Integer, Boolean, Boolean, String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource

DOCUMENT ME!

setLastImage(boolean) - Method in class gov.nih.mipav.view.ViewOpenFileUI

Indicates whether or not to put the image file path into the list of recently opened images.

setLastImage(String, boolean, int) - Static method in class gov.nih.mipav.view.Preferences

Sets the last image loaded in the Preferences file.

setLastImageFlag - Variable in class gov.nih.mipav.view.ViewOpenFileUI

DOCUMENT ME!

setLastModifiedBy(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setLastMoveDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

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setLastMoveDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

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setLastMoveDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

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setLastMoveTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

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setLastMoveTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

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setLastMoveTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setLastName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setLastName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter

DOCUMENT ME!

setLastOpenSequenceParams(String, String, String, String) - Static method in class gov.nih.mipav.view.Preferences

Used by ViewOpenImageSequence to save the user's most recent slices, channels, time points, and ordering that were specified in the component.

setLastOpenSequencePath(String) - Static method in class gov.nih.mipav.view.Preferences

Used by ViewOpenImageSequence to save the path used when opening an image sequence.

setLastScript(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets last used script files in preferences.

setLastSliceBeforeBleach(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setLastStackFlag(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the last value for opened multi-files (or single).

setLastState(int) - Method in class gov.nih.mipav.view.ViewJFrameBase

setLastState.

setLastState(int) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Sets the display state of the Frame to be either Frame.NORMAL or Frame.ICONIFIED.

setLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Called when a new lattice is loaded from file, replaces the current lattice.

setLatticeClip(boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setLatticeClip(boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

setLatticeClip(boolean, Vector3f, Vector3f[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setLatticeSegment(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

setLayerString(String[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLayoutConstraints(Component) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

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setLeaderEmail(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setLeaderExperimenterRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setLeaderFirstName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setLeaderInstitution(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setLeaderLastName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Group

DOCUMENT ME!

setLeft(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the left side value.

setLeft(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the left side value.

setLeft(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

SetLeft(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

setLeftCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setLeftHandSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Sets the left-hand coordinate flag.

setLeftHandSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Sets the left-hand coordinate flag.

setLeftHandSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Sets the left-hand coordinate flag.

setLeftHandSystem(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase

Sets the left-hand coordinate flag.

SetLeftLine(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the left-line parameter to the GLSL Shader Program.

setLeftList(JList) - Method in class gov.nih.mipav.view.JPanelListController

Convience method to set list A.

setLeftPad(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set if padded with extra column on left.

setLeftPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setLeftPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setLeftPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most left point marker for +acpc to +tlrc transformation in dicom ordering.

setLeftPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets left label based on the point.

setLeftPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets left label based on the point.

setLeftTable(JTable) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel

DOCUMENT ME!

setLeftTree(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

Convenience method to set tree A.

setLegendRight(ContourPlot.Renderer) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the renderer that will draw the legend to the right of the coordinate system.

setLegendRightWidth(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets the width of the legend area right to the coordinate system.

setLegendVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that tells whether to show the legend.

setLeicaCondenserTurret(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLeicaFilterCubeArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLeicaFIMArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLeicaICTurret(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLeicaMagnificationChanger(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLength(int) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the length of this DICOM tag as read in by FileDicom.

setLength(FileDicomKey, int) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the length of the tag.

setLength(String, int) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the length of the tag.

setLens(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setLensNA(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective

DOCUMENT ME!

setLess(float) - Method in interface gov.nih.mipav.view.PaintGrowListener

Determines the lower bound of what values we will grow into (lowThreshold = seedValue - val).

setLess(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets less for regionGrow.

setLessB(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets lessB for regionGrow.

setLesserEqualValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setLessG(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets lessG for regionGrow.

setLessR(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets lessR for regionGrow.

setLevel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the intensity level that defines the surface that is to be extracted.

setLevel1Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setLevel1Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setLevel1FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel1FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel1FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel1FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel2Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setLevel2Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setLevel2FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel2FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel2FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel2FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel4Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setLevel4Factor(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setLevel4FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel4FactorXY(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel4FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

setLevel4FactorZ(float) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

setLevel5Format(boolean) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setLevelDetail(int) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

set the surface level of detail keyword:

setLevelDetail(int) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML

set the surface level of detail keyword:

setLevelDetail(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the level of detail for the ClodMesh

setLevels(ArrayList<Integer>) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

setLibre(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect

Sets the light type for the given light.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets the light type for the given light.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Sets the light for the EllipsoidsShader.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Sets the light for the EllipsoidsShader.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets lighting in the VolumeShaderEffect.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Sets the light type for the given light.

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SetLight(String, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

setLightAttributes(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Update the properties of the specified light bulb.

setLightAttributes(int, GeneralLight) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

Update the properties of the specified light bulb.

setLightBulbsVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Sets the light bulbs to visible or invisible.

setLightColor(int, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

Set the light color.

setLightDirection(int, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

The the light direction.

setLightDirectional(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

Enable the light direction arrow.

setLighting(SoftwareLightSet, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting

Setup the specified set of lights to use for rendering.

setLighting(SoftwareLightSet, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection

Setup the specified set of lights to use for rendering.

setLighting(SoftwareLightSet, SoftwareMaterial) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the specified set of lights to use for rendering.

setLightingMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the texture render to render in lighting mode.

setLightingMode() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the texture render to render in lighting mode.

setLightManagerEnabled(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setLightManagerMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setLightMode(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLightPosition(int, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

The the light move positions.

setLightSourceAttenuation(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setLightSourceIntensity(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setLightSourceWavelength(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

setLimitBins(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

setLimits(float[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Sets the limits on rotation and translation.

setLimits(float[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D

Sets the limits on rotation and translation.

setLimits(float[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Sets the limits on rotation and translation.

setLinearIndex(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT

Checks boundaries for new dragged point in LUT.

setLinearLUT() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This method sets the histogram to Linear Transfer Function Mode.

setLinearLUT() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This method sets the histogram to Linear Transfer Function Mode.

setLineChartColor(Color) - Method in class gov.nih.mipav.view.LineMeter

applies the given color to bars which are "lit" and are up to the set amplitude.

setLineNumber(int) - Method in exception gov.nih.mipav.model.scripting.ParserException

Changes the line number in the script where the problem happened.

setLink(Runnable, Runnable, int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti

Create a link between two algorithms.

setLinkButtonSelected(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true

setLinkButtonSelected(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true

setLinkButtonSelected(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true

setLinkedFrame(ViewJFrameImage) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets the link Frame.

setLinkedImagePath(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the path for the linked image.

setLinkedProgressValues(int, AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion

Sets convolver progress values so that linked algorithm will show at least a 1% change.

setLinkedTriFrame(ViewJFrameTriImage) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets the link Frame.

setLinkingNodes(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setListA(JList) - Method in class gov.nih.mipav.view.JPanelListController

there is no programmatic way to determine which arrow is pointing where.

setListB(JList) - Method in class gov.nih.mipav.view.JPanelListController

there is no programmatic way to determine which arrow is pointing where.

setListLength() - Method in class gov.nih.mipav.view.JPanelAnonymizeImage

made to ensure the listLength gets set.

setListLength() - Method in class gov.nih.mipav.view.JPanelChecklist

Abstract to ensure the variable listLength has a value.

setListLength() - Method in class gov.nih.mipav.view.JPanelStatisticsList

DOCUMENT ME!

setListType(int) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList

Changes the type of the elements in the list.

setLoad(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Tells the progress bar to say "Loading" rather than "Opening" for images being loaded if true.

setLocalAddress(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Sets the local address of the calling application entity.

setLocation(double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D

setLocation(double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D

Sets the location of this point's ContourPlot.TranslatedPoint2D.origin so that this point ends up at the desired location.

setLocation(int, int) - Method in interface gov.nih.mipav.view.ProgressBarInterface

DOCUMENT ME!

setLocator(MediaLocator) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource

DOCUMENT ME!

setLocator(MediaLocator) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource

DOCUMENT ME!

setLock() - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the lockFlag to protect data.

setLock(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the lockFlag to protect data.

setLOD(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh

Set the current level of detail to C with 0 <= C <= getMaximumLOD().

setLogAlgorithm(String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogComms(String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogFileIO(String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogFlag(boolean) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

This flag indicates if the histogram should be displayed using a log10 scale.

setLogFlag(boolean) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

This flag indicates if the histogram should be displayed using a log10 scale.

setLogicalOperation(int) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

setLogLevel(int, Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogLevel(int, String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogLevelAlgorithm(Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences

setLogLevelComms(Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences

setLogLevelFileIO(Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences

setLogLevelMinor(Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences

setLogLevelScripting(Preferences.LogLevel) - Method in class gov.nih.mipav.view.Preferences

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the boolean telling if log magnitude display is used in a complex image.

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that turns log mag display on or off.

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the log magnitude display flag.

setLogMagDisplay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the log magnitude display flag.

setLogMinor(String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLogo(Image) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

setLogScale(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set logScale.

setLogScripting(String) - Method in class gov.nih.mipav.view.Preferences.LogConfig

setLong(int, long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a long value for the specified tag.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the long data in float format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the long value in unsigned short format.

setLong(int, long) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the long value in unsigned short format.

setLongitudinalAnatomicalReference(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setLow(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setLowerBound(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the lower bound from the script dialog.

SetLowerBound(int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setLowerBoundB(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the lower blue bound from the script dialog.

setLowerBoundG(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the lower green bound from the script dialog.

setLowerBoundR(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the lower red bound from the script dialog.

setLowerExtents(int) - Method in class gov.nih.mipav.model.file.FileSpar

setLowerList(JList) - Method in class gov.nih.mipav.view.JPanelListController

Convience method to set list B.

setLowerTree(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

Convience method to set tree B.

setLowGain(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets lowGain variable.

setLowThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

Accessor that sets the lowThreshold.

setLowTruncated(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Accessor that sets lowTruncated variable.

setLowXmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the lowest x location in millimeters.

setLowYmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the lowest y location in millimeters.

setLowZmm(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the value of the lowest z location in millimeters.

setLSMDataType(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setLSMDataType2(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setLudlAuxWheel1(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLudlMainWheel1Array(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setLUT() - Method in class gov.nih.mipav.model.file.FileImageXML

Sets up the LUT based on the values read into the lutVector.

setLUT(float[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

I don't think both are needed in the new Model LUT design. /** Accessor that sets the LUT for the colors of the indices.

setLUT(ModelLUT) - Method in class gov.nih.mipav.model.file.FileHistoLUT

Accessor to set the LUT.

setLUT(ModelLUT) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the model lut

setLUT(ModelLUT) - Method in interface gov.nih.mipav.view.HistoLUTParent

Replaces the LUT and builds a new LUT component.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.JPanelHistogram

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Replaces the LUT and builds a new LUT component.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Placeholder.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Change the panel's LUT.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Placeholder.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Replaces the LUT and builds a new LUT component.

setLUT(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Replaces the LUT and builds a new LUT component.

setLUT(ModelStorageBase) - Method in class gov.nih.mipav.view.JPanelHistogram

Sets the LUT and updates the histogram panel.

setLUT(ModelStorageBase) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT

Change the lookup table associated with the image and histogram.

setLUT(ModelStorageBase) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB

Change the lookup table associated with the image and histogram.

setLUT(ModelStorageBase) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

setLUT(JPanelHistogram, ModelStorageBase) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets the LUT for the input panel.

setLUT(Texture, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Set the color look-up table for the widget.

SetLUT(Texture, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

setLUTa(ModelLUT) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.PatientSlice

Accessor that sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Accessor that sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Accessor that sets the model LUT for the image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Accessor that sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Accessor that sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Accessor that sets the model lut for the image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Accessor that sets the model lut for the image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Accessor that sets the model LUT for the imageA.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Accessor that sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Set imageA lookup table.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

accessor that sets the model LUT for the imageA.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the model LUT for the imageA.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets LUTa.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Sets the LUT for image A.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the model LUT for the imageA.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the model LUT for the imageA.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Accessor that sets the LUT.

setLUTa(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Change the histogram component LUT.

setLUTA(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Replaces the LUT A component.

setLUTA(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Replaces the LUT A component.

setLUTA(ModelStorageBase) - Method in class gov.nih.mipav.view.JFrameHistogram

Set LUTa

setLUTb(ModelLUT) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.PatientSlice

Accessor that sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Accessor that sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Accessor that sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Accessor that sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Accessor that sets the model lut for the image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Accessor that sets the model lut for the image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Accessor that sets the LUT.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Accessor that sets the model LUTb for the imageB.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Accessor that sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Set imageB lookup table.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the model LUTb for the imageB.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the model LUTb for the imageB.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor that sets LUTb.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the LUT for image B.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Accessor that sets the LUT.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Accessor that sets the LUT.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setLUTb - accessor that sets the model LUTb for the imageB.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setLUTb - accessor that sets the model LUTb for the imageB.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Accessor that sets the LUT.

setLUTb(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Change the histogram component LUT.

setLUTB(ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Replaces the LUT B component.

setLUTB(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Replaces the LUT B component.

setLUTB(ModelStorageBase) - Method in class gov.nih.mipav.view.JFrameHistogram

Set LUTb

setLUTBufferRemapped(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

Set.

setLUTConvexity(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

DOCUMENT ME!

setLUTConvexity(ModelLUT) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Update the colormap based on the LUT:

setLUTCurvature(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Update the colormap based on the LUT:

setLUTCurvature(ModelLUT) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Update the colormap based on the LUT:

setLUTdest(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

setLUTdest(ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

setLUTNew(String, ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the LUT to use as an alternative to the volume lut for surface texturing.

SetLUTNew(ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Set the user-specified LUT for surface texture.

SetLUTNew(ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets the alternate LUT for surface texture mapping.

SetLUTNew(ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets the LUT to use as an alternative to the volume lut for surface texturing.

SetLUTNew(String, ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the LUT to use as an alternative to the volume lut for surface texturing.

setLUTs(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Set the gray scale image LUT tables.

setLUTs(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets LUTa and LUTb.

SetMachineEps() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

----------------------------[ MachineEps ]---------------------------- Calculate machine epsilon Algorithm A1.3.1 - p. 303 Dennis and Schnabel, Numerical Methods for Unconstrained Optimization and Nonlinear Equations 1983, Prentice-Hall

setMagMax() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the maximum magnification to the image. will ensure that the current magnification is not larger than the maximum.

setMagMax() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the maximum magnification to the image. will ensure that the current magnification is not larger than the maximum.

setMagMin() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the minimum magnification to the image. will ensure that the current magnification is not smaller than the minimum.

setMagMin() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the minimum magnification to the image. will ensure that the current magnification is not smaller than the minimum.

setMagneticFieldStrength(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setMagneticFieldStrength(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMagnification(float) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the magnification of the images will ensure that the current magnification is not smaller than the minimum.

setMagnification(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the magnification of the images will ensure that the current magnification is not larger than the maximum.

setMagnification(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Objective

DOCUMENT ME!

setMakingCheckerboard(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setManufacturer(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setManufacturer(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setManufacturerModelName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMapC(int) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setMapchannel(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setMapR(int) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setMapS(int) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setMarker(VertTmark) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

setMarkers(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setMarksFlag(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

setMarksFlags(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

setMask(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the mask (BitSet object).

setMask(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver

Sets the mask to convolve within.

setMask(BitSet) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the mask which indicate which pixels/voxels to process.

setMask(BitSet) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the volume mask data -- the intersection of the triangle mesh with the volume data.

setMask(BitSet, int, int, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase

SETMASK - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream

setMaskBU(BitSet) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the mask which indicate which pixels/voxels to process.

setMaskBurnVector(Vector<MaskBurnAttribute>) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Initialize the mask burning vector.

setMaskExtents(int[]) - Method in class gov.nih.mipav.model.file.FileInfoSPAR

setMaskImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify

Accessor to set the directory.

setMaskSD(float) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the mask standard deviation (in the same units as the image).

setMaskSlice(BitSet, int, boolean, int) - Method in class gov.nih.mipav.model.structures.VOIBase

setMaskType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Accessor that sets the mask type

setMaskType(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionPaintToMask

Changes the data type of the paint extraction we want to record.

setMaskType(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionVOIToMask

Changes the data type of the VOI extraction we want to record.

setmat(int, int, int, double[][], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL

setmat(int, int, int, DoubleDouble[][], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP

setMatchFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Accessor that sets the matchOrigin flag.

setMaterial(String, MaterialState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the material for the given surface.

setMaterial(String, MaterialState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the material for the given surface.

setMaterial(Material) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the material properties for the surface:

setMaterial(Material) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the material properties for the surface:

setMaterial(Material) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sets the material properties of the mesh.

setMaterial(Material) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the surface Material. the Material diffuse color is used to set the color value as well.

setMaterial(Material, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Called from the JPanelSurfaceMAterialProperties.java dialog when the dialog is used to change the material properties of a surface.

setMaterial(MaterialState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the material properties for the surface:.

setMaterial(MaterialState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the material properties for the surface:.

setMaterial(MaterialState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay

Set the material.

setMaterial(MaterialState, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Called from the JPanelSurfaceMAterialProperties.java dialog when the dialog is used to change the material properties of a surface.

SetMaterial(MaterialState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Set the surface material properties

setMaterialShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the texture material shininess value.

setMaterialShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the texture material shininess value.

setMaterialShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set material ( texture or voxels ) shininess value.

setMaterialShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the texture material shininess value.

setMaterialShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the texture material shininess value.

SetMaterialState(MaterialState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Called from the AdvancedMaterialProperties dialog.

setMatrix(double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Set a submatrix.

setMatrix(double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Set a submatrix.

setMatrix(int, int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

setMatrix(int, int, int, int, double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Set a submatrix.

setMatrix(int, int, int, int, double[][]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Set a submatrix.

setMatrix(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the matrix associated with the FileInfo.

setMatrix(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoMGH

DOCUMENT ME!

setMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that adds a matrix to the matrix holder.

setMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.VOIPoint

setMatrix(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

update matrix and text matrix

setMatrix(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the transformation matrix.

setMatrixDirectory(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set directory in which the matrix file is stored

setMatrixDirectory(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Accessor to set directory in which the matrix file is stored

setMatrixDirectory(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set directory in which the matrix file is stored

setMatrixDirectory(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set directory in which the matrix file is stored

setMatrixDirectory(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

Accessor to set directory in which the matrix file is stored

setMatrixQ(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMatrixS(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMatrixSize1(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setMatrixSize2(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setMax(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets max pixel value of image.

setMax(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the maximum value in the dataArray.

setMax(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Sets the maximum voxel value for the skin.

setMax(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo

setMax(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setMax(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the maximum value for X, Y, or Z processing.

setMaxAdvectionChange(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the maximum advection change allowed in the PDE solver update.

setMaxAdvPropTimeStep(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the maximum advection-propagation time step.

setMaxB(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets max blue pixel value of image.

setMaxB(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the maximum value in the dataArray.

setMaxB(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMaxB(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the maximumBlue value for X, Y, or Z processing.

setMaxCurvatureChange(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the maximum curvature change allowed in the PDE solver update.

setMaxCurvatureTimeStep(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the maximum curvature time step.

setMaxDebugLines(int) - Static method in class gov.nih.mipav.view.Preferences

Sets the maximum number of debug lines that are output

setMaxDepth(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the maximum depth, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.

setMaxDepth(int) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Set the maximum depth that is part of the image term in the surface evolution.

setMaxDiff(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Accessor that sets the maximum contribution to the potential of the difference between two neighboring pixel values.

setMaxDim(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

setMaxDim(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

setMaxDistance(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

setMaxDistance(int) - Method in interface gov.nih.mipav.view.PaintGrowListener

Set the maximum distance for the region grow.

setMaxDistance(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets maxDistance for regionGrow.

setMaxEMIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setMaxEntropyThreshold(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets maximum entropy threshold.

setMaxExtent(int, int[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Updates the BufferedImage, Dimension, and render buffers when the render target image size changes so that the image can be redisplayed at the new target resolution.

SetMaxFuncEval(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

set limit for the number of function evaluations

setMaxG(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets max green pixel value of image.

setMaxG(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the maximum value in the dataArray.

setMaxG(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMaxG(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the maximum Green value for X, Y, or Z processing.

setMaximumAngle(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Sets the maximum angle of the mouse movement.

setMaximumAngle(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Sets the maximum angle of the mouse movement.

setmaximumDistance(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

Accessor that sets the maximumDistance.

setMaximumIgnore(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the maximum of the range of intensities to ignore.

setMaximumIgnoreB(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the maximum of the range of blue intensities to ignore.

setMaximumIgnoreG(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the maximum of the range of green intensities to ignore.

setMaximumIgnoreR(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the maximum of the range of red intensities to ignore.

setMaximumLevel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

setMaximumLines(int) - Method in class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea

setMaximumLines(int, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Sets the maximum number of lines for the specified text area.

setMaximumPixelCount(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setMaximumPixelCountInGroup(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setMaximumPossibleBValue(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setMaximumRRInterval(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setMaximumSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Accessor that sets the maximum size for objects to delete.

setMaximumSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the maximum size the kernel mask can be increased to when adaptive median filtering is used.

setMaximumVelocity(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Sets the maximum velocity of the mouse movement.

setMaximumVelocity(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Sets the maximum velocity of the mouse movement.

setMaxIntensity(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setMaxiter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setMaxIter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the max iterations.

setMaxIter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the max iterations.

setMaxIter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the max iterations.

setMaxIter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the max iterations.

setMaxIter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the max iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Sets the maximum number of iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Sets the maximum number of iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

Accessor that sets the maximum number of iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

Accessor that sets the maximum number of iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Accessor that sets the maximum number of iterations.

setMaxIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set maxIterations.

setMaxIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set maxIterations.

setMaxIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set maxIterations.

SetMaxIterations(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

set limit for the number of iterations

setMaxLength(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setMaxLength(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength

Sets the maximum sublength.

setMaxLength(int) - Method in class gov.nih.mipav.view.JPanelEditDefault

sets the system bell to ring whenever the string is larger than the specified value. attempting to reset to value larger than a previous setting results in an undefinable behaviour

setMaxLength(int) - Method in class gov.nih.mipav.view.JPanelEditSetOrParam

sets the system bell to ring whenever the string is larger than the specified value. attempting to reset to value larger than a previous setting results in an undefinable behaviour

setMaxLines(int) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener

setMaxMAPIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

SetMaxNumNonZeros(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

setMaxOfMinResol(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the maximum resolutions flag.

setMaxOfMinResol(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the maximum resolutions flag.

setMaxProbability(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if maximum probability operator is calculated.

setMaxProbability(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if maximum probability operator is calculated.

setMaxProgressValue(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the max progress value.

setMaxPropagationChange(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the maximum propagation change allowed in the PDE solver update.

setMaxR(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets max red pixel value of image.

setMaxR(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the maximum value in the dataArray.

setMaxR(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMaxR(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the maximum Red value for X, Y, or Z processing.

setMaxRenExtent(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

setMaxRenExtent changes the render target image by changing the pixBufferA_XY size and by changing the render target image of the componentImageXY member variable. createTexturedImage (local) is called to reinitialize the size of the texture displayed on the texture-mapped polygon.

setMaxSamplingRate(int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setMaxSamplingRate(int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setMaxThresholdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMaxThresholdCheckBoxB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMaxThresholdCheckBoxG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMaxThresholdCheckBoxR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMaxTx(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the maximum X translation.

setMaxTy(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the maximum Y translation.

setMaxTz(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the maximum Z translation.

setMaxutil(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

SetMCRootPositions(OctNode, int, float, HashMap<Long, Integer>, HashMap<Long, Integer>, HashMap<Long, Pair<Float, Point3D>>, HashMap<Long, Pair<Float, Point3D>>, Vector<Point3D>, CoredMeshData, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setMean(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that set if the gray level coordinate matrix mean is calculated.

setMean(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that set if the gray level coordinate matrix mean is calculated.

setMean(double) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets mean intensity of histogram.

setMean(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

Accessor that sets destination image mean.

setMean(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

setMeanCurvaturesLUT(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Use the specified pseudocolors to render the computed mean curvatures for the previously specified mesh surface.

setMenuActionListeners(Component, ActionListener) - Method in class gov.nih.mipav.view.ViewUserInterface

setMenuItemEnabled(String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder

Provides a method of setting the state of specified menu.

setMenuItemSelected(String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder

Provides a method for changing the status of a checkbox menu item.

setMenuLocation(int, int) - Method in class gov.nih.mipav.view.JScrollMenu

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

setMerge(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

setMergeThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

setMesh(ModelTriangleMesh[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the ModelTriangleMesh representing the surface:

setMesh(ModelTriangleMesh[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the array of ModelTriangleMesh objects:

setMesh(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark

setMesh(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark

setMesh(Point3f[], Vector3f[], Color4f[], int[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Creates the ModelTriangleMesh for the surface:

setMessage(int, String) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti

Updates the displayed message above a given progress bar

setMessage(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText

Sets the text area to the message, erasing what was there earlier.

setMessage(String) - Method in class gov.nih.mipav.view.JPanelProgressBar

DOCUMENT ME!

setMessage(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface

public void updateValueImmed( int value );

setMessage(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph

Sets the text area to the message, erasing what was there earlier.

setMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBar

Sets the message area of the progress bar.

setMessage(String, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Sets the text area to the message, erasing what was there earlier.

setMessageFrame(ViewJFrameMessage) - Static method in class gov.nih.mipav.view.Preferences

Sets the message frame.

setMessageText(String) - Method in class gov.nih.mipav.view.ViewJFrameBase

Accessor to set the text of the main frame's text field.

setMessageText(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Accessor to set text of message field.

setMessageType(int, int) - Static method in class gov.nih.mipav.view.DICOMDisplayer

Sets the type of message so it will be displayed in the appropriate column.

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Accessor that sets the method (chan, vector, twophase).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Accessor that sets the construction method (WINDOW, GAUSSIAN, BUTTERWORTH).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

Accessor that sets the construction method (WINDOW, GAUSSIAN, BUTTERWORTH).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the construction method (WINDOW, GAUSSIAN, BUTTERWORTH).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Accessor that sets the construction method (WINDOW, GAUSSIAN, BUTTERWORTH).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

Accessor that sets the construction method (WINDOW, GAUSSIAN, BUTTERWORTH).

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setMethod(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

setMethod(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

SetMethodPar(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

set numerical gradient function

setMicrofocusPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setMicroscope(String) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setMicroscope(String, String, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument

DOCUMENT ME!

setMicroscopeIllumination(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMicroscopeMagnification(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMicroscopeName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMicroscopePort(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMicroscopeSystem(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setMicroscopeType(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMicroscopeType(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setMicroSecPerFrame(int) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setMicroSecPerFrame(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setMiddleName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

SetMidLine(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the mid-line parameter to the GLSL Shader Program.

setMIMEType(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setMin(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets min pixel value of image.

setMin(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the minimum value in the dataArray.

setMin(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Sets the minimum voxel value for the skin.

setMin(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the minimum value for X, Y, or Z processing.

setMinAllowableMajorTickSpacing(double) - Method in class gov.nih.mipav.view.ViewJSlider

setMinAllowableMinorTickSpacing(double) - Method in class gov.nih.mipav.view.ViewJSlider

setMinB(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets min blue pixel value of image.

setMinB(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the minimum value in the dataArray.

setMinB(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMinB(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the minimum Blue value for X, Y, or Z processing.

setMincInfo(FileInfoMinc) - Method in class gov.nih.mipav.view.JPanelAnonymizeImage

allows the checkboxes to be disabled by testing the file info for the tags present.

setMindIdent(String[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets mindIdent array, character data which serve to identify the type of DWI data structure represented by the MIND extended header fields which follow

setMinDist(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setMinDistance(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

setMinG(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets min green pixel value of image.

setMinG(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the minimum value in the dataArray.

setMinG(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMinG(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the minimum Green value for X, Y, or Z processing.

setMinimumBitsMinus1(int) - Method in class gov.nih.mipav.model.file.FileRaw

Used in reading and writing boolean

setMinimumBitsMinus1(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

Used in reading and writing boolean

setMinimumDelay(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setMinimumIgnore(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the minimum of the range of intensities to ignore.

setMinimumIgnoreB(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the minimum of the range of blue intensities to ignore.

setMinimumIgnoreG(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the minimum of the range of green intensities to ignore.

setMinimumIgnoreR(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the minimum of the range of red intensities to ignore.

setMinimumLevel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

setMinimumRRInterval(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setMinimumSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Accessor that sets the minimum size for objects to delete.

setMinimumThreshold(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

sets minimum threshold values.

setMinIntensity(double[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Sets the min max values based on image type.

setMinMax(double, double, double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

setMinMax(float, float) - Method in class gov.nih.mipav.view.ViewJComponentGraphAxes

setMinMax(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Sets the minimum and maximum values of the ModelImage and the Gradient Magnitude image for displaying the graph axes of the 2D Histogram.

setMinMax(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Sets bounds of object size used to delete objects.

setMinMax(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Sets the bounds of object size used to delete objects.

setMinMax(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Sets bounds of object size used to delete objects.

setMinMax(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Sets the bounds of object size used to delete objects.

setMinorTickMarksVisible(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that tells whether to show the minor tick marks.

setMinPixels(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

setMinProgressValue(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the min progress value.

setMinR(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets min red pixel value of image.

setMinR(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the minimum value in the dataArray.

setMinR(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

setMinR(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the minimum Red value for X, Y, or Z processing.

setMinSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

Accessor that sets the minSize.

setMinThresholdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMinThresholdCheckBoxB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMinThresholdCheckBoxG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMinThresholdCheckBoxR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

checkbox for inverse threshold

setMinTx(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the minimum X translation.

setMinTy(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the minimum Y translation.

setMinTz(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the minimum Z translation.

setMipavOrigin(float[]) - Method in class gov.nih.mipav.model.file.FileInfoSPM

setMJPEGQuality(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setModality() - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets the image modality based on the.

setModality(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the modality.

setModality(String) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the image modality based on the string

setModality(String) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting modalityString

setModalityChooser(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

Sets the modality chooser box based on the file info modality (the modality indexes should match up with the ordering of the chooser).

setModalityFromDicomStr(String) - Method in class gov.nih.mipav.model.file.FileInfoDicom

Uses the DICOM tag value to set the Image modality field.

setModalityString(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMode(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets the mode intensity of histogram.

setMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets the mode (VOI_MODE, MASK_MODE, or LEVEL_MODE).

setMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice

Accessor that sets the mode: linear, cubic, or cubic bspline.

setMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Set the mode at the beginning of the vector array.

setMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Accessor that sets the mode.

setMode(int) - Method in class gov.nih.mipav.view.renderer.MouseEventVector

Set the mode at the beginning of the vector array.

setMode(int) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Accessor that sets the mode.

setMode(int) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

Accessor that sets the mode.

setMode(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

sets mode.

setMode(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

sets mode.

setMode(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay

DOCUMENT ME!

setModelLights(SoftwareLight[]) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet

Specify a set of software lights defined in model coordinates.

setModelLUT(ModelLUT) - Method in class gov.nih.mipav.model.file.FileImageXML

Sets the model LUT.

setModelLUT(ModelLUT) - Method in class gov.nih.mipav.model.file.FileIO

Sets the LUT.

setModelName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SetModelParameterSteps(Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the number of model parameter steps.

setModelRGB(ModelRGB) - Method in class gov.nih.mipav.model.file.FileImageXML

Sets the model RGB.

setModelRGB(ModelRGB) - Method in class gov.nih.mipav.model.file.FileIO

Sets the RGB.

setModified() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setModified() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Causes the bottom three panels to re-display.

setModified() - Method in class gov.nih.mipav.view.ViewJFrameImage

setModified() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setModified() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setModified() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

SetModified(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Causes re-display.

setModifyFlag(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

setMono(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setMore(float) - Method in interface gov.nih.mipav.view.PaintGrowListener

Determines the upper bound of what values we will grow into (highThreshold = seedValue + val).

setMore(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets more for regionGrow.

setMoreB(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets moreB for regionGrow.

setMoreG(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets moreG for regionGrow.

setMoreR(float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets moreR for regionGrow.

setMotorolaByteOrder(boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader

Sets the endianness of this reader.

setMotorolaByteOrder(boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader

Sets the endianness of this reader.

setMouseActive(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

setMouseControlFlythru(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setMouseDrag(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

doDrag true enables the adjusted slice to respond to mouse press and drag events doDrag false restricts the adjusted slice to responding to mouse press and release events.

setMouseFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setMouseFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Set the mouse flythru mode

setMouseFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the flythru mode

setMouseMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Accessor that sets the current mouse mode of the dialog.

setMouseMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Sets the mouse pointer mode - standard or fly - in the view dialog.

setMouseMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the mouse pointer mode - standard or fly - in the view dialog.

setMouseMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the mouse pointer mode - standard or fly - in the view dialog.

setMouseRotateEnable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Allow disabling or enabling mouse rotation:

setMouseRotateEnable(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Allow disabling or enabling mouse rotation:

setMouseRotationSpeed(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the mouse rotation speed from the rotation control slider

setMouseSpeedModifier() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setMouseTranslationSpeed(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the mouse translation speed from the translation control slider

setMouseVectorFlag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

flag to indicate the first time mouse tranform event happpened.

setMouseVectorFlag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

flag to indicate the first time mouse tranform event happpened.

setMouseZoomSpeed(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the mouse zoom speed from the zoom control slider

setMove(float, float, float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

If doDrag == false, this routine processes movements generated by mouse presses and releases.

setMove(float, float, float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

If doDrag == false, this routine processes movements generated by mouse presses and releases.

setMoveImageData(String, String, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sets up the data object (IOD) for a patient root image level C-Move request given patID, study instance UID, series instance UID, and SOP Instance UID.

setMoveParameters(DICOM_PDUService, DICOM_Object, byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sets up the neccessary parameters for sending a move request.

setMovePatientData(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sets up the data object (IOD) for a patient root patient level C-Move request given patID.

setMoveSeriesData(String, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Set up the data object (IOD) for a patient root series level C-Move request given patID, study instance UID, and series instance UID.

setMoveStudyData(String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sets up the data object (IOD) for a patient root study level C-Move request given patID and study instance UID.

setMovingSliderValue(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setMRAcquisitionType(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setMRIProcessName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Move

Sets the msgID for the outgoing C-Move Request.

setMsgID() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

This sets the unique msgID for the outgoing C-Move Request.

setMsgID(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest

Sets the message ID to the value given.

setMsgID(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve

Sets the msgID for the outgoing C-Move Request.

setMu(double) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Accessor that sets the length parameter mu.

setMulti(boolean) - Method in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

setMultichannelColor0(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMultichannelColor1(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMultichannelColor2(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMultichannelColor3(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMultichannelWeight(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setMultiFile(boolean) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the flag for multiple files.

setMultiFile(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether or not to write the image as multiple files, one 2D slice per file.

setMultiFrame(boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom

Sets whether the DICOM image is a multiFrame image.

setMultiHistoEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setMultiThread(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set if multithreading is used

setMultiThread(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set whether or not powell's algorithm uses multithreading

setMultiThread(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set whether or not powell's algorithm uses multithreading

setMultiThreadingEnabled(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

setMutualInfoSmoothed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

setN(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setN(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setNACondenser(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setName(String) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the VOI's name to the parameter.

setName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

setName(String) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setName(String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Set the current vector title name.

setName(String) - Method in class gov.nih.mipav.view.renderer.MouseEventVector

Set the current vector title name.

setName(JTextField) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

DOCUMENT ME!

SetName(String) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Set the simple image name

SetName(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

setNameStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

setNameTable(String[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

setNaviMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

SetNBands(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

SetNCandidates(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Set the number of candidates

setNClasses(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the number of classes.

setNClasses(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the number of classes.

setNColors(int) - Method in class gov.nih.mipav.view.JPanelHistogram

Change the text field showing the number of colors.

setNColors(int) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Change the text field showing the number of colors.

setNcomp(int) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW

setND1(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setND2(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setNDARData(NDARWriteData) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Sets the NDAR Data that will be used to populate XML header fields

setNDFilter(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setNear(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the distance from the eye point to the view plane.

setNearAndAngle(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the near distance and the field of view angle.

setNearBoundPoint(int) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the near boundary point.

setNearPoint(int) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the near point.

setNegativeCurvatureNeeded(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

setNegativeHysteresisFraction(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

setNegativeSpeed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setNeighbors(OctNode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NeighborKey

setNeighbourLink(ArrayList<Boolean>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

setNeighbourLink(ArrayList<Boolean>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

setNeighbours(ArrayList) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

setNeighbours(ArrayList<AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

setNeighbours(ArrayList<AlgorithmNetworkSnake.SnakeNode>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

setNESW(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if northeast-southest offset direction is calculated.

setNESW(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if northeast-southest offset direction is calculated.

setNeuriteColor(String, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setNewAlphaBlend(int) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the alpha blending of parameter for two image displaying.

setNewImageName(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeName

Changes the image name which should be recorded as given to the input image.

setNewPosition(int, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

setNewPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric

setNewThreshold(float, PaintGrowListener, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow

DOCUMENT ME!

setNewVar(float, float, boolean[], float[], float[], float[], float[], double, double, double, double, double, double, double, double, double, double, boolean, float) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Modifies component after mouseReleased in contour VOI indicating that the VOI has been moved.

setNewVar(float, float, float, float, boolean[], float[], float[], float[], float[], double, double, double, double, double, double, double, double, double, double, boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Modifies a frame of the colocalization histogram after mouseRelased has indicated the contour VOI in the source image has been moved.

setNewXs(int[], int) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setNewXs - accessor that sets the integer array of x coordinates to be plotted; used by the graphics for the actual plotting of the graph.

setNewYs(int[], int) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setNewYs - accessor that sets the integer array of y coordinates to be plotted; used by the graphics for the actual plotting of the graph.

setNext(int) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setNextByteMoreSignificant(boolean) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream

setNextByteMoreSignificant(boolean) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream

setNIFTIExtension(String) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether or not nifti should be written as a combined .nii file or as separate .hdr and .img files.

setNil(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setNint(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setNiter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

setNodeColor(int, Color) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

Sets the node color for all the nodes at the given level of the Graph.

setNodeColor(Node, int, int, Color) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

Uses recursion to set the node color for all the nodes at a given level of the Graph.

setNodeIndices(OctNode, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setNodeList(TreeMap<AlgorithmNetworkSnake.tuple2i, AlgorithmNetworkSnake.SnakeInitialiser.Node>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setNodes(ArrayList<AlgorithmNetworkSnake.ContractingSnakeNode>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake

setNodes(ArrayList<AlgorithmNetworkSnake.SnakeNode>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

setNodeType(int) - Method in class gov.nih.mipav.view.dialogs.ScriptTreeNode

setNoise(double) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the noise.

setNoise(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the noise.

setNoise_std(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets the noise standard deviation.

setNoiseLevel(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Accessor that sets the noise level.

setNoiseStandardDeviation(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets the noise standard deviation.

setNoiseType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets noiseType variable.

setNoiseType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Accessor that sets the noise type.

setNonHelical(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

setNonLinear(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

setNonlinearFunction(int) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the nonlinear function type(tanh(a1*y), y*exp(-y*y/2), or y*y*y)

setNorm(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the normalization constant.

setnormal(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setNormal(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the normal vector for the vertex.

setNormal(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the normal vector for the vertex.

setNormal(Vector3f, int, int, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

setNormalized(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

setNormals(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Specify the array of normal vectors for each voxel in the volume.

setNormalVectorX(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setNormalVectorY(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setNormalVectorZ(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setNormMutualInfoSmoothed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

setNormXCorr(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

setNorth(AlgorithmNetworkSnake.PixelGrid.PixelGridNode) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setNoScalingD(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Accessor that sets whether or not d is read in from the text or calculated from d = 1 - a - b - c.

setNote(String) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the contained note.

setNoteDate001(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteDate001.

setNoteDate002(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteDate002.

setNoteDate003(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteDate003.

setNoteDate004(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteDate004.

setNoteDate005(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteDate005.

setNoteNumber001(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteNumber001.

setNoteNumber002(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteNumber002.

setNoteNumber003(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteNumber003.

setNoteNumber004(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteNumber004.

setNoteNumber005(String) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets noteNumber005.

setNPts(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth

setNreal(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setNS(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if north south offset direction is calculated.

setNS(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if north south offset direction is calculated.

setNscales(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setNscales(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setNscales(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setNscales(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setNSymbt(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setNull() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

setNumAperture(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setNumberClusters(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setNumberFormat(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setNumberOfA0Images(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfAverages(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setNumberOfAverages(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfAverages(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setNumberOfControlPoints(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setNumberOfDiffusionDirections(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfEchos(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setNumberOfLevels(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setNumberOfLevels(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

setNumberOfLevels(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setNumberOfLevels(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setNumberOfNieghbors(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

setNumberOfObjects(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfPhaseEncodingSteps(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setNumberOfProjections(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set numberOfProjections.

setNumberOfRepetitions(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfRequiredVOIsForScriptImages(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

setNumberOfSegments(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setNumberOfThreads(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

setNumberOfXGridLines(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets the number of gridlines for paint.

setNumberOfYGridLines(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets the number of gridlines for paint.

setNumberTriangles(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the number of triangles of the ModelTriangleMesh objects.

setNumChannels(int) - Method in class gov.nih.mipav.model.file.FileRaw

Sets the number of channels used in RGB files

setNumChannels(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

Sets the number of channels used in RGB files.

setNumCoarseX(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample rateX.

setNumCoarseY(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample rateY.

setNumCoarseZ(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the coarse sample rateZ.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Accessor that sets the number of dilations to perform.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Accessor that sets the number of dilations to perform.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Accessor that sets the number of dilations to perform.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Accessor that sets the number of dilations to perform.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Accessor that sets the number of dilations to perform.

setNumDilations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Accessor that sets the number of dilations to perform.

setNumErode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Accessor that sets the number of dilations to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Accessor that sets the number of erosions to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Accessor that sets the number of erosions to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Accessor that sets the number of erosions to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Accessor that sets the number of erosions to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Accessor that sets the number of erosions to perform.

setNumErosions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Accessor that sets the number of erosions to perform.

setNumFrames(int) - Method in class gov.nih.mipav.model.file.FileInfoAvi

DOCUMENT ME!

setNumImages(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setNumIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Accessor that sets the number of iterations.

setNumIterations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Accessor that sets the number of iterations.

setNumMinima(int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set numMinima.

setNumMinima(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set numMinima.

setNumMinima(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set numMinima.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

Accessor that sets numNeighbor.

setNumNeighbor(int) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

Accessor that sets numNeighbor.

setNumOfSlices(int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setNumOpens(int) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Accessor that sets the number of dilations to perform.

setNumOrientations(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

setNumProp(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setNumPruningPixels(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

Accessor that sets the number of pixels to prune.

SetNumResiduals(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction

setNumScalar(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setNumSlices(int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setNumTracks(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setNumVertices(int) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex_list

setNumVolumes(int) - Method in class gov.nih.mipav.model.file.DTIParameters

setNumVolumes(int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setNwarps(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setNWave(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setny(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

setnz(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

setObject(int, Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a Object for the specified tag.

setObject(int, Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ErrorDirectory

setObject(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setObjectArray(int, Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

setObjectArray(int, Object) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets an array Object for the specified tag.

setObjectiveContrastMethod(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveID(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveImmersionType(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveMagnification(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveNA(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveName(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setObjectiveName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectivePosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setObjectiveSphereCorrection(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setObjectiveTurretPosition(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectiveWorkingDistance(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObjectParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the object rotation parameters for displaying.

setObjectRotation(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the object rotation matrix

setObjectType(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setObliquePlane(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setObliqueReconstruction(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setObservedCardiacCycles(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setObserver(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setOcularTotalMagnification(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setOffCentre(double[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setOffCentre(double[]) - Method in class gov.nih.mipav.model.file.FileInfoSPAR

Sets off-centre field.

setOffset(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setOffset(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

setOffset(int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the header offset.

setOffset(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

setOffset(int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor

setOffset(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer

setOffset(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer

setOffSet(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

Set the boundary offset parameter in mm.

setOffsetDistance(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets the offset distance.

setOffsetDistance(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets the offset distance.

setOK() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Called when the dialog OK button is pressed. this sets up the Algorithm state to commit the changes in the image and to tell the dialog to cleanup and delete this algorithm.

setOldImageName(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionChangeName

Changes the old name of the input image.

setOldLayout(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Transition between the 2x2 window layout and 3x1 window layout:

setOmax(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets omax.

setOmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets omax.

setOmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets omax. if supplied value is less than omin, the omin gets reset to the supplied value as well, so that omin is still no greater than omax.

setOME(FileInfoOME.OME) - Method in class gov.nih.mipav.model.file.FileInfoOME

DOCUMENT ME!

setOMEName(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter

DOCUMENT ME!

setOmin(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets omin. if supplied value is greater than omax, the omax gets reset to the supplied value as well, so that omax is still no less than omin.

setOmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets omin. if supplied value is greater than omax, the omax gets reset to the supplied value as well, so that omax is still no less than omin.

setOmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets omin. if supplied value is greater than omax, the omax gets reset to the supplied value as well, so that omax is still no less than omin.

setOnlyID(short) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the ID to the parameter.

setOpacity(float) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink

Sets the opacity for the surface.

setOpacity(float) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

set the surface opacity keyword:

setOpacity(float) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML

set the surface opacity keyword:

setOpacity(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setOpacity(float) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the opacity to the parameter.

setOpacity(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the surface Opacity.

setOpacity(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Sets the opacity of the paint.

setOpacity(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Sets the opacity of the paint.

setOpacity(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from JDialogOpacityControls.

setOpacity(float) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that sets the opacity of the paint.

setOpacity(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

SetOpacity(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Set the surface opacity properties

setOpacityFunction(TransferFunction) - Method in class gov.nih.mipav.model.file.FileHistoLUT

Sets the opacity function, which indicates that we want it to be saved / read in with the rest of the transfer functions.

setOpacityFunctions(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Add here.

setOpacityInfo(float, float) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets RGB Information.

setOpacitySliderXEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the opacity slider X with given boolean value.

setOpacitySliderXEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the opacity slider X with given boolean value.

setOpacitySliderYEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the opacity slider Y with given boolean value.

setOpacitySliderYEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the opacity slider Y with given boolean value.

setOpacitySliderZEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the opacity slider Z with given boolean value.

setOpacitySliderZEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the opacity slider Z with given boolean value.

setOperator(int) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

set operator.

setOperator(int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Accessor that sets the operator type.

setOperator(int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Accessor that sets the operator type.

setOperator(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setOptional(boolean) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Sets whether this parameter needs to be set by the user when using the ActionDiscovery system.

setOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

Sets up the options depending on what the user entered in the dialog.

setOptionsDefault() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

Sets up the options to the default values as determined by the file info in setSpace and returns the new options.

setOptionsSet(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether all of the options have been previously set (usually by the script parser).

setOptovar(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setOrder(int[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets order array for set of spherical harmonic basis functions

setOrgan(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setOrient() - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Gets the orientation from the combo boxes and checks if it's consistent.

setOrientation() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Based on the orientaion of the ModelImage, sets up the index parameters, m_aiLocalImageExtents[0], m_aiLocalImageExtents[1], and m_aiLocalImageExtents[2], the drawing colors for the z box, x and y bars, and the invert flags.

setOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Based on the orientation of the ModelImage, sets up the index parameters, m_aiLocalImageExtents[0], m_aiLocalImageExtents[1], and m_aiLocalImageExtents[2], the drawing colors for the z box, x and y bars, and the invert flags.

setOrientation() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Based on the orientation of the ModelImage, sets up the index parameters, m_aiLocalImageExtents[0], m_aiLocalImageExtents[1], and m_aiLocalImageExtents[2], the drawing colors for the z box, x and y bars, and the invert flags.

setOrientation(byte) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the image orientation converting from analyze specific orientation to general orientation.

setOrientation(byte) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the image orientation converting from SiemensText specific orientation to general orientation.

setOrientation(byte) - Method in class gov.nih.mipav.model.file.FileInfoSPM

Sets the image orientation converting from SPM specific orientation to general orientation.

setOrientation(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Indicates the orientation of the image for use in the ellipsoid estimation.

setOrientation(int) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Accessor that sets the orientation flag.

setOrientation(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Accessor that sets the orientation of the component either FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL, or FileInfoBase.UNKNOWN_ORIENT

setOrientation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setOrientation(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setOrientationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

setOrientationSet1Back(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientationSet1Left(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientationSet1Top(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientationSet2Down(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientationSet2Front(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientationSet2Right(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setOrientType(String, boolean) - Static method in class gov.nih.mipav.model.file.FileInfoMinc

Helper method to set the axis orientations.

setOrigAC(Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets the anterior comissure in original space.

setOrigDicom(boolean) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets origDicom.

setOrigDim(int[]) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets dims in original space.

setOrigin(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setOrigin(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setOrigin(float[]) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets start locations of each axis.

setOrigin(float[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the origin.

setOrigin(float[]) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets start locations of each axis.

setOrigin(float, int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the start location of the specified axis.

setOrigin(float, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the start location in the specified axis. creates the startLocations if the arrray has not yet been created.

setOrigin(float, int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the start location of the specified axis.

setOrigin(int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the origin of this text object, i.e. the bottom left corner of the rectangle enclosing the text, the text's location so to say

setOrigin(short[]) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setOrigin(Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the origin of this text object, i.e. the bottom left corner of the rectangle enclosing the text, the text's location so to say

setOrigin(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

SetOrigin(Matrix4f, Matrix4f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

SetOriginal() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Set original point.

SetOriginal(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Sets whether the point is an original model point or an artificial generated point.

setOriginalCropCheckbox(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalDataType(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom

setOriginalDataType(int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setOriginalDoCrop(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalEnd(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalEndianess(boolean) - Method in class gov.nih.mipav.model.file.FileInfoBase

setOriginalEpsilon(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

setOriginalExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets original dimensionality of the images.

setOriginalFilterConstruction(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalFilterOrder(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalInstitution(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setOriginalKernelDimension(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalPosteriorMargin(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AC posterior margin marker for orig to ACPC transformation in dicom ordering using numbers not adjusted for origin and resolution.

setOriginalRs(double) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

setOriginalScanData(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setOriginalSeriesNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setOriginalStagePositionX(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setOriginalStagePositionY(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setOriginalStart(int[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setOriginalSuperiorEdge(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AC superior edge marker for orig to ACPC transformation in dicom ordering using numbers not adjusted for origin and resolution.

setOriginalXs(float[]) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setOriginalXs - accessor that sets the array of x coordinates to be plotted; used by the zoom to reset the graph.

setOriginalYs(float[]) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setOriginalYs - accessor that sets the array of y coordinates to be plotted; used by the zoom for reseting the graph.

setOriginatingSystem(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setOriginator(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the originator string.

setOriginator(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows a maximum of 10 characters to set the originator string.

setOriginX(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setOriginY(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setOrigOrient(float[][]) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets orienatationsin origianl space.

setOrigOrigin(float[]) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets origin in original space.

setOrigPC(Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets posterior comissure in original space.

setOrigRes(float[]) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets resolution in original space.

setOrthographicProjection() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Changes the projection to Orthographic Projection.

setOTFRefDocumentRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

DOCUMENT ME!

setOTFRefOTFID(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo

DOCUMENT ME!

setOther(int, int, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem

Sets the information in the variable that comes after the attribute array.

setOtsuThreshold(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets the Otsu threshold.

setOutDimensions(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor to set the output image's dimensions.

SetOuterEdge() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Set outer edge.

SetOuterEdge(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Sets whether the point belongs to an outer edge or not.

setOutgoingBlockSize(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF

Sets the outgoing block size based the the Max.

setOutgoingEndianess(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Sets the endianess for the outgoing data.

setOutiter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setOutiter(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setOutMinAndMax(int) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

sets out min and max...used in scripting

setOutOfBoundsIndex(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max

setOutOfBoundsIndex(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max

setOutOfBoundsIndex(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max

setOutOfBoundsIndex(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max

setOutput(double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron

setOutputDir(String) - Static method in class gov.nih.mipav.view.ViewUserInterface

setOutputDirectory(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

Sets the default output directory for the images generated by this panel.

setOutputFileName(String) - Method in class gov.nih.mipav.model.file.FileAvi

setOutputImageOptionsEnabled(boolean) - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

Enables/disables the new/replace image output radio buttons.

setOutputNewImage(boolean) - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

Changes whether a new image should be generated by the algorithm.

setOutputNewImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Changes whether a new image should be generated by the algorithm.

setOutputNewImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Changes whether a new image should be generated by the algorithm.

setOutputNewImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Changes whether a new image should be generated by the algorithm.

setOutputNewImageType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

setOutputOption(boolean, boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

Set the output options

setOutputOptionsGUI(JPanelAlgorithmOutputOptions) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Sets up the algorithm output options panel components (whole image vs.

setOutputRangeMax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the maximum output range to the parameter.

setOutputRangeMax(double) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the maximum output range to the parameter.

setOutputRangeMin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the minimum output range to the parameter.

setOutputRangeMin(double) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Accessor that sets the minimum output range to the parameter.

setOutputType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the output type.

setOutputWindowBox(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

Updates the checkbox to show whether or not the output window is currently displayed.

setOutResolutions(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor to set the output image's resolutions.

setOutsideReferenceSlice(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

allows user to use an outside reference slice for registering.

setOutsideReferenceVolume(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

allows user to use an outside reference volume for registering.

setOverlay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether or not to show the overlay.

setOverlayButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay

Sets the text for the overlay buttons (dicom or image attrib).

setOverlayNames(boolean, String[]) - Static method in class gov.nih.mipav.view.Preferences

Sets the labels for each overlay position.

setOverlays(boolean, String[]) - Static method in class gov.nih.mipav.view.Preferences

Sets the overlay tag identifiers in the preference file.

setP(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setP1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the p1 value

setP2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the p2 value

setPAAIGraphVisible() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setPackBitEnabled(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether it is possible to write with packed bits compression.

setPad1(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setPad2(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setPaddingFactor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setPaddingFactor(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setPadFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the padding flag.

setPadMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Accessor to set padMode.

setPadValue(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Deprecated.
The value is not just used for padding. Please use setFillValue().

setPadValue(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages

Sets the pad value for single-channel images.

setPadValue(float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins

Sets the value for the added margins, for either grayscale or color images.

setPadValue(float, float, float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages

Sets the pad value for color images

setPageToCurrentSlice() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the current page so that the current image slice is displayed.

setPageToSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the page so that the given image slice is displayed.

setpaintBitmap(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the paint Bitmap.

setPaintBitmap(BitSet) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set paint bitmap switch

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

When switching the active image, copy the paintBitmap of the previous active image into the paintBitmap of the new active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set paint bitmap switch

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

If true do not getMask on a setActiveImage command so as to keep the mask from the old active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameBase

If true do not getMask on a setActiveImage command so as to keep the mask from the old active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

DOCUMENT ME!

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

When switching the active image, copy the paintBitmap of the previous active image into the paintBitmap of the new active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

When switching the active image, copy the paintBitmap of the previous active image into the paintBitmap of the new active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image.

setPaintBitmapSwitch(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.

setPaintBrush(int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Sets the index of the paintBox (to select a different paint brush).

setPaintBrushButtonSelected() - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that sets the paint brush button to selected.

setPaintBrushSize(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Switches modes based on the variable mode.

setPaintColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the color of the paint.

setPaintColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the color of the paint.

setPaintColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the color of the paint.

setPaintColor(Color) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that sets the color of the paint.

setPaintGrowMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Change the method for determining the points to paint grow from.

setPaintMask() - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets the paintBitmap to produce colored borders for 4D images.

setPaintMask(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

Changes the paint mask that we look for borders in.

setPaintMask(BitSet) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Accessor that sets the paint mask.

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the paint mask.

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameImage

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

setPaintMask(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setPaintMaskDest(BitSet) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Accessor that sets the paint mask.

setPaintMaskDest(BitSet) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Accessor that sets the paint mask.

setPaintMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Sets the type of paint, either vertex-color or texture value:

setPanel(JPanelGeodesic) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Access to the JPanelGeodesic interface object.

setPanel(JPanelGeodesic_WM) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Access to the JPanelGeodesic interface object.

setPanel(JPanel) - Method in class gov.nih.mipav.view.components.PanelManager

Changes the panel which is managed by this class.

setPanelTitle(String) - Method in class gov.nih.mipav.view.JPanelFileSelection

Sets the panel title independant of the file chooser title.

setPannedAxes(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning

Sets the axes to which this panning is applied.

setPaperColor(Color) - Method in class gov.nih.mipav.view.LineMeter

applies the given color to the background.

setParallel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Change the camera model.

setParallel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Change the camera model.

setParallel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Change the camera model.

setParallel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Change the camera model.

setParallelPowell(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

setParallelRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the parallel rotation flag from the viewJFrameVolumeView.

setParallelRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the parallel rotation flag from the viewJFrameVolumeView.

setParallelRotation(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the parallel rotation flag from the viewJFrameVolumeView.

setParam(Vector<Integer>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Test

SetParameterBlockConstant(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl

SetParameterBlockStatePtrsToUserStatePtrs() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program

SetParameterBlockVariable(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl

SetParameterization(double[], CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl

SetParameterization(CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setParameterLabel(String) - Method in exception gov.nih.mipav.model.scripting.parameters.ParameterException

Change the parameter label which caused this parameter exception.

SetParameterLowerBound(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl

SetParameterOffsetsAndIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program

setParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

Accessor that sets the parameters

setParameters() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

Accessor that sets the parameters

setParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train

setParameters() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train

setParameters(DICOM_PDUService, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the neccessary parameters for sending a query.

SetParameterUpperBound(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl

setParent(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

setParent(MetadataExtractor.Directory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

setParent(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Sets the reference to another Parameter who this parameter relies on.

setParentCondition(Parameter, String) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Changes the parent Parameter and parent Parameter condition value to test against when deciding whether to ask for a value for this Parameter when using the ActionDiscovery interface.

setParentConditionValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Changes the parent Parameter condition value to test against when deciding whether to ask for a value for this Parameter when using the ActionDiscovery interface.

setParentDialog(DicomTagSelectorImpl) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

setParentDir(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

setParentTags(Collection<String>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

setParfocalCorrection(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setPARRECMatrix(TransMatrix) - Method in class gov.nih.mipav.model.file.FileInfoSPAR

setParsedFileName(String) - Method in exception gov.nih.mipav.model.scripting.ParserException

Changes the file from which the script was read in ('-' if no file on disk).

setPatchSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

setPathDist(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Update the camera position along the path based on the specified distance from the beginning.

setPathDist(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Update the camera position along the path based on the specified distance from the beginning.

setPathDist(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

Update the camera position along the path based on the specified distance from the beginning.

setPathDistance(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the current distance along the length of the path.

setPathDistance(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the current distance along the length of the path.

setPathFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setPathFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Set the path flythru mode

setPathFlythruMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setPathPlanningFlythru(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setPathPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the coordinates of the current position along the path.

setPathPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Updates the position of the flythru view point along the flythru path.

setPathPosition(Point3f, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Called when the view position changes in the FlyThruRenderer, updates the position representation in the Slice views:

setPathPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the coordinates of the current position along the path.

setPathRecorded(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

setPathRecorded(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

setPatientAge(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPatientAge(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setPatientAgeUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setPatientDOB(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the patient ID string.

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows a maximum of 10 characters to set the patient ID string.

setPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows a maximum of 10 characters to set the patient ID string.

setPatientName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPatientName(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setPatientName(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setPatientOrientation(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientOrientationString(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Set String put in DICOM 0020, 0037

setPatientPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setPatientPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setPatientRootQuery() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

setPatientRootQuery - sets query to Patient Root.

setPatientRotation(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientSex(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPatientSex(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPatientSlicePosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the PatientSlice position label.

setPatientSlicePosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Sets the PatientSlice position label.

setPatientStatus(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPatientStudyOnlyQuery() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

setPatientStudyOnlyQuery - sets query to Patient Study Only.

setPatientWeight(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPauseBetweenFrameGroups(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPauseBetweenImages(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPauseInterval(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPauseTime(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPB(float) - Method in class gov.nih.mipav.view.ColorWheel

setPBar(ProgressBarInterface) - Method in class gov.nih.mipav.model.file.FileIO

Sets the progress bar (either panel or frame) to be used in image opening to update status.

setPBar(ProgressBarInterface) - Method in class gov.nih.mipav.model.file.FileXML

Sets the progress bar to be used for loading/saving image (JProgressBar or JPanel).

setPC(float) - Method in class gov.nih.mipav.view.ColorWheel

setpcie(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the posterior commissure inferior edge for +acpc to +tlrc transformation in dicom ordering.

setPCVelocityEncoding(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2

Parameters for the feature image creation.

setPDEParameters(float, int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3

Parameters for the feature image creation.

setPeakSAR(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPenColor(Color) - Method in class gov.nih.mipav.view.LineMeter

applies the given color to bars which are not lit and are above the set amplitude.

setPercentPhaseFieldOfView(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPercentSampling(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPerformedProcedureStepStartTime(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

SetPerPixelLighting(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets the lighting shader to be per-pixel or per-vertex.

SetPerPixelLighting(Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets the lighting shader to be per-pixel or per-vertex.

setPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setPerspectiveProjection() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Changes the projection to Perspective Projection.

setPerVertexColorArray(Color4f[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Set the per-vertex color array.

setPETDataType(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPETStudyGeneral(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPETStudyImageData(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setPFSwapped(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPG(float) - Method in class gov.nih.mipav.view.ColorWheel

setPhaseContrastFlowAxis(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPhaseDim(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setPhiLatticeParametricDomainParameters() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setPhone(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setPhone(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Sets phone number.

setPhone(String, int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the investigators phone # using an index.

setPhotometric(short) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets photometric interpretation.

setPhotometricInterpretation(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPickable(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Turn picking culling on/off for the selected surfaces.

setPickable(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Turns picking on/off for the selected surfaces.

setPickable(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turn picking on/off for the given surface.

setPickable(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enable surface picking for the given surface.

SetPickable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Enables/disables picking for this object.

setPickCanvas(PickCanvas) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Access function to set the pickCanvas.

setPickCanvas(PickCanvas) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Access function to set the pickCanvas.

setPickColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets the picking color.

setPickColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

Sets the picking color.

setPickColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the picking color of this ContourPlot.Text object.

setPickColor(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

Sets the picking color.

setPicked(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Clears or sets the current picked object, sets the outline color to red when picked, blue when not selected.

setPicked(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

Clears or sets the current picked object, sets the outline color to red when picked, blue when not selected.

setPicked(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

Clears or sets the current picked object, sets the outline color to red when picked, blue when not selected.

setPicked(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the current picked ID.

setPicked(Renderer, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Clears or sets the current picked object, sets the outline color to red when picked, blue when not selected.

setPickedPoint(PickRecord, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Set the picked point.

setPickedPoint(PickRecord, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

setPImage2(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPinholeGeometry(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setPinholeRadius(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setPinholeSize(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setPinholeSizeAiry(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setPixDistance(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Used in the ultimate erode function to remove all eroded points less than the distance specified in pixel units.

setPixDistance(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Used in the ultimate erode function to remove all eroded points less than the distance specified in pixel units.

setPixDistance(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Used in the ultimate erode function to remove all eroded points less than the distance specified in pixel units.

setPixDistance(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Used in the ultimate erode function to remove all eroded points less than the distance specified in pixel units.

setPixel(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid

setPixelBandwidth(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPixelInformationAtLocation(int, int, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Prints ModelImage information at the mouse location.

setPixelPadValue(Short) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets pixel pad value: used in some Dicom images.

setPixelRepresentation(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPixels(AlgorithmNetworkSnake.PixelGrid.PixelGridNode[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid

setPixelSize(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPixelSpacing(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setPlanarConfig(int) - Method in class gov.nih.mipav.model.file.FileRaw

Sets the planar configuration for RGB images.

setPlanarConfig(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

Sets the planar configuration for RGB images.

setPlane(int) - Method in class gov.nih.mipav.model.structures.VOIBase

setPlane(int) - Method in class gov.nih.mipav.model.structures.VOIPoint

setPlaneConstant(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Set the front the clipping plane constant

setPlaneConstant(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setPlaneConstant(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the VolumeRayCast front clipping plane constant

setPlaneGap(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets planeGap to -1 for no gap, 0 = x gap, 1 = y gap, 2 = z gap.

setPlaneName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPlaneType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPlateChamberID(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setPlateInfo(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setPlateVesselID(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setPlatform(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setPlatformVersion(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setPLogP(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

Precalculates information and allocates buffers used in the calculation of mutual information statistics.

setPLogP(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

Precalculates information and allocates buffers used in the calculation of mutual information statistics.

setPlugInFrameVisible(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Tells the UI that a standalone plugin frame is visible

setPluginInstallDirectory(File) - Static method in class gov.nih.mipav.view.Preferences

Sets the plugin install directory.

setPlugInMenu(JMenu) - Method in class gov.nih.mipav.view.ViewMenuBar

Sets the menu containing the list of installed plugins.

setPNumber(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

setPockelCellSetting(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setpoint(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setPoint(double[]) - Method in class gov.nih.mipav.model.algorithms.Vectornd

setPoint(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line

setPoint(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line

setPoint(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line

setPoint(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line

setPoint(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line

setPoint(int, double) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Knot

Add an individual coordinate value (x or y) to points array (6 points per knot)

SetPoint(int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Overwrites the i'th point.

SetPoint(int, CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Overwrites the i'th point.

setPoint1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setPoint2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setPointAux(int, CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Set specific point info

setPointAux(Vector<CAAMPointInfo>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

set point info vector

setPointCalculation(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setPointData(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setPointerButton(JToggleButton) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called when the Default Pointer Button is not part of the default VOI Toolbar.

setPointerButton(JToggleButton) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

setPointerSelected() - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that sets the pointer button to selected.

SetPointInfoFlagsInPath(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Sets all flags in one path to the same value.

setPointLocation(Vector<Vector4d>) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setPoints(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

Sets the controls points of the Bspline and calculates the total arc-length.

setPoints(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

Sets the controls points of the Bspline and calculates the total arc-length.

setPoints(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

Takes the polygon and forms two special arrarys for use in runSnake.

setPoints(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth

Takes the polygon and forms two special arrays for use in the Bspline.

setPoints(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

Takes the polygon and forms two special arrays for use in the Bspline.

setPoints(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF

Takes the polygon and forms two special arrays for use in the Bspline.

setPoints(float[], float[], float[], VOIBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake

setPoints(float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

Takes the polygon and forms two special arrarys for use in runSnake.

setPoints(float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

Takes the polygon and forms two special arrays for use in the Bspline.

setPoints(float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF

Takes the polygon and forms two special arrarys for use in the Bspline.

setPoints(float[], float[], Polygon) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake

Takes the polygon and forms two special arrays for use in runSnake.

setPoints(float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge

setPoints(Vectornd[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

Sets the transformation vectors.

setPoints(Vectornd[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

Sets the transformation vectors.

setPoints(Vectornd[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Sets the transformation vectors.

setPoints(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setPoints2(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth

Takes the polygon and forms two special arrays for use in the Bspline.

setPointsAndLinesDisplay(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Accessor that sets whether to display lines only, points and lines, or points only

setPointThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

Accessor that sets the pointThreshold.

setPointVOI(VOI) - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration

All VOIPoints are stored in one VOI contained in this class.

setPointWeights(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setPolarity(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the polarity flag.

setPolarity(int) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the polarity to the parameter.

setPolygon(VOIContour) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

Spefify the VOI polygon to optimize.

setPolygonMode(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Set the polygonal render mode.

setPolygonMode(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Sets the polygon mode, if it has changed.

setPolygonMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the surface polygon mode.

setPolygonMode(String, WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the polygon mode (FILL, LINE, POINT) for the given surface.

setPolygonMode(String, WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the polygon mode (FILL, LINE, POINT) for the given surface.

SetPolygonMode(boolean, WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Enables/disables wireframe and sets the mode: FILL, LINE, POINT.

setPolylineColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Sets the polyline color for the specified fiber bundle tract group.

setPolylineColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the polyline color for the specified fiber bundle tract group.

setPopupPt(ViewJPopupPt) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Called from VOIManagerInterface.

setPopupVOI(ViewJPopupVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Called from VOIManagerInterface.

SetPoseParameterUpdateConstraints(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Sets constraints on the pose parameter updates.

setPosition(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current position of the light.

setPosition(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

Set the light source position.

setPosition(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the position of the vertex.

setPosition(int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets the position of the Img value this Pixel references.

setPosition(int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the position of this pixel to the specified coordinates.

setPosition(int, int) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

setPosition(VOIBase, int, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setPosition(VOIBase, int, float, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setPosition(VOIBase, int, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setPosition(VOIBase, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

setPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current position of the light.

setPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

Set the light source position.

setPosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the position of the vertex.

SetPosition(int, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

setPositionLabels(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the labels which show the absolute position within the image volume and the patient position.

setPositionLabels(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the labels which show the absolute position within the image volume and the patient position.

setPositionLabels(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the labels which show the absolute position within the image volume and the patient position.

setPositionLabels(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the position labels.

setPositionLabels(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Sets the position labels.

setPositionLabels(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the position labels.

setPositionText(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

Sets text in positionPanel.

setPositionText(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Placeholder.

setPositionText(String) - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog

Sets text in positionPanel.

setPositiveHysteresisFraction(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

setPosteriorCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setPosteriorMargin(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AC posterior margin marker for orig to ACPC transformation in dataset ordering.

setPosteriorMargin(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Sets posterior label based on the point.

setPosteriorPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most posterior point marker for +acpc to +tlrc transformation in dicom ordering.

setPosteriorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets posterior label based on the point.

setPosteriorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets posterior label based on the point.

setPostImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setPotential(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Accessor that sets the potential

setPPIAcceleration(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

\

setPrecisionDisplay(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Sets the String float formatter to trim to numDecimal number of decimals.

setPreferencesFileDirectory(String) - Static method in class gov.nih.mipav.view.Preferences

Change the file directory of the preferences file.

setPreferencesFileName(String) - Static method in class gov.nih.mipav.view.Preferences

Change the file name of the preferences file we should use (without any path).

setPreparationDirection(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setPrescanReceiveAttenuation1(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPrescanReceiveAttenuation2(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPrescribedImageNumbers(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPrescribedSeriesNumbers(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPreserveFOV(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets value for the preserveFOV boolean

setPresetHue(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setPresetHue(float) - Method in class gov.nih.mipav.view.Rubberband

Sets the presetHue.

setPresetHue(float) - Method in class gov.nih.mipav.view.RubberbandLivewire

Sets the presetHue.

setPresetHue(float) - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Sets the hue that will be used to draw the new VOI.

setPressedStart(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setPreviewMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

setPreviewMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

setPreviewMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

setPreviewMode(boolean, VOIVector, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setPreviewMode(boolean, VOIVector, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setPreviousStartIndices(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the indices of the triangle that the previous start point is located in.

setPreviousStartIndices(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the indices of the triangle that the previous start point is located in.

setPreviousStartPoint(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the previous start point of the geodesic curve on the mesh.

setPreviousStartPoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the previous start point of the geodesic curve on the mesh.

setProbe(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setProbeCoordinate(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

Set the probe translation in the local coordinate system.

setProbeCoordinate(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe

Set the probe translation in the local coordinate system.

setProbeCoordinate(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Set the probe translation in its local coordinate.

setProbeCoordinate(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

Set the probe translation in the local coordinate system.

setProbeCoordinate(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

Set the probe translation in the local coordinate system.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

Switch the default probe between color cyan and color green.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe

Switch the default probe between color cyan and color green.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

When the probe is picked, switch the probe geometry appearance to green.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

When the probe is picked, change the probe geometry shape color to green to indicate picked.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

Switch the default probe between color cyan and color green.

setProbeGreenColor(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

Switch the default probe between thermal probe and the indicator probe.

setProbeTG(Transform3D, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the Transform3D for the slices based on the Probe Transform.

setProbeTG(Transform3D, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the Transform3D for the slices based on the Probe Transform.

setProcess(boolean) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the flag to the parameter.

setProcess(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets whether the shape is included in processing.

setProcessConvUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

setProcessHifiUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

setProcessIndep(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Accessor that sets whether slices are processed independently.

setProcessMode(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

setProcessStatus(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProcessType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions

Set the output calculation by type.

setProcessWholeImage(boolean) - Method in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

Changes whether a whole image should be processed (as opposed to just VOI regions).

setProgram(String, String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setProgramArguments(String, String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setProgramAuthor(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProgramDate(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProgramName(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setProgramVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProgress(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

setProgressBar(ProgressBarInterface) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setProgressBar(ViewJProgressBar, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Accessor that sets the progress bar so it can be updated from here.

setProgressBar(ViewJProgressBar, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D

Accessor that sets the progress bar so it can be updated from here.

setProgressBarInitLocation(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

DOCUMENT ME!

setProgressBarVisible(boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Sets whether or not the progress bar should be visible.

setProgressBarVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets Progress Bar visibility.

setProgressModulus(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

setProgressStep(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

setProgressValues(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the min and max progress values from an array of two ints.

setProgressValues(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets both the min and max progress values.

setProjectionAngle(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setProjectionDataAlreadyOnCBR(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set projectionDataAlreadyOnCBR.

setProjectionDirection(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setProjectionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProjectionTime(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setProjectionUSize(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set projectionUSize.

setProjectionVSize(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set projectionVSize.

setPromenance(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if the cluster promenance is calculated

setPropagation(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

Sets the propagation flag.

setPropagation(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF

Sets the propagation flag.

setPropagation(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

Sets the propagation type.

setPropagation(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake

Sets the propagation type.

setPropagationWeight(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseParameters

Set the propagation weight 'b'.

setProperties() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

setProperties(float[][]) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setProperty(String, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

setProperty(String, Object) - Static method in class gov.nih.mipav.view.Preferences

Sets the property key in the MIPAV property list and saves it to a file.

setPropertyName(String) - Method in class gov.nih.mipav.view.JPanelEdit

Sets the propertyName to allow the PropertyChangeEvent to send out a unique name when PropertyChangeEvents are fired.

setPropNames(String[]) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setProtocol(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets scan Protocol for equipment associated with image.

setProtocolName(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setProvidedOutputDir(boolean) - Static method in class gov.nih.mipav.view.ViewUserInterface

setProvidedUserDefaultDir(boolean) - Static method in class gov.nih.mipav.view.ViewUserInterface

setPS(float) - Method in class gov.nih.mipav.view.ColorWheel

setPSDDay(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDHour(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDMinute(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDMonth(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDSeconds(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSDYear(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSeries2(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPSetDescription(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

setPSetHashtable(Hashtable<String, XMLPSet>) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the hashtable that holds all sets of parameters.

setPSetsHashMap(HashMap<?, ?>) - Method in class gov.nih.mipav.model.file.FileWriteOptions

sets the pset hasmap

setPt(float[], float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setPt(AlgorithmMeanShiftClustering.famsPoint) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry

setPts(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo

setPublisher(String) - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey

setPulseSequence(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPulseSequenceMode(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPulseSequenceSubtype(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setPump(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser

DOCUMENT ME!

setPunctureTriangle(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh

Set the index of the triangle used to "puncture" the mesh before the conformal mapping is computed.

setPunctureTriangle(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM

Set the index of the triangle used to "puncture" the mesh before the conformal mapping is computed.

setPutInFrame(boolean) - Method in class gov.nih.mipav.view.ViewOpenFileUI

Indicates whether or not the new image should be put into a frame.

setQ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the q variable.

setQ(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the q variable.

setQMesh(ModelQuadMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Sets the quad mesh by detaching the parent branch group and readding the surface.

setQuality(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

setQuality(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI

DOCUMENT ME!

setQuantificationUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setQuantizationTable(int[]) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setQuantizationTable(int[]) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setQueryImagesData(String, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the data object (IOD) for a patient root image level C-Find request on key patient ID.

setQueryPatientData(String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the data object (IOD) for a patient root patient level C-Find request on key patient name.

setQuerySeriesData(String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the data object (IOD) for a patient root series level C-Find request on key patient ID.

setQueryStudyData(String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the data object (IOD) for a patient root study level C-Find request on key patient ID.

setQueryStudyData(String, String, String, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets up the data object (IOD) for a patient root study level C-Find request on key patient ID.

setQuickLUT(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the QuickLUT flag.

setQuiet(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setQuiet(boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

setQuiet(boolean) - Method in class gov.nih.mipav.model.file.FileDicom

sets the quiet option on the class.

setQuiet(boolean) - Method in class gov.nih.mipav.model.file.FileIO

Refers to whether or not the FileIO will send alerts to the user about progress or errors.

setQuiet(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

setQuietRunning(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

setR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setR(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets red channel value of this Pixel.

SetR() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

SetR(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

setR_fromDouble(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

setR_fromDouble(double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the red value of this pixel at its current position with 0.0 as no red contribution and 1.0 as full red contribution.

setR1(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setR2(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRace(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the subject's race.

setRadioBoth - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

setRadiological(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

setRadiological(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Toggles between radiological and neurological views of the data.

setRadiologicalView(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the radiological view flag.

setRadiologicalView(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Sets the view to Radiological (true) or Neurological (false) view.

setRadiologicalView(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Sets the view to Radiological (true) or Neurological (false) view.

setRadiopharmaceutical(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setRadius(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Set the radius of the spheres used to mark the start and end points on the geodesic curve.

setRadius(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Set the radius of the spheres used to mark the start and end points on the geodesic curve.

setRadius(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

SetRadius(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

SetRandomSeed(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA

get random seeding flag.

setRange() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise

Sets the range of the destination image.

setRange(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Change the range of floating point values for the progress bar.

setRange(float, float) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets the range of the graph according to the min and max parmaters.

setRange(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Sets the thickness in number of voxels value for the skin.

setRange(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Change the range of integral values for the progress bar.

SetRange(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect

setRangeSymmetric() - Method in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

setRangeText(float, float, int) - Method in interface gov.nih.mipav.view.HistoLUTParent

Set the range value of the text field.

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.JPanelHistogram

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Set the range value of the text field.

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Placeholder.

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Placeholder.

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Set the range value of the text field.

setRangeText(float, float, int) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Set the range value of the text field.

setRating(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setRatio(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setRational(int, MetadataExtractor.Rational) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a Rational value for the specified tag.

setRational(int, MetadataExtractor.Rational) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setRational(int, MetadataExtractor.Rational) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setRationalArray(int, MetadataExtractor.Rational[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a Rational[] (array) for the specified tag.

setRationalArray(int, MetadataExtractor.Rational[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setRationalArray(int, MetadataExtractor.Rational[]) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setRawDataStudyNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRawDataSystemID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRawExtension(String) - Method in class gov.nih.mipav.model.file.FileImageXML

Changes the extension of the image data file associated with this XML header.

setRawImageInfo(RawImageInfo) - Method in class gov.nih.mipav.model.file.FileIO

DOCUMENT ME!

setRawImageInfo(RawImageInfo) - Method in class gov.nih.mipav.view.dialogs.ScriptImage

setRawImageInfo(RawImageInfo) - Method in class gov.nih.mipav.view.ViewOpenFileUI

setRawImageInfo(RawImageInfo) - Method in class gov.nih.mipav.view.ViewUserInterface.OpenFileInfo

DOCUMENT ME!

setRayBasedRender(VolumeRenderer) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Set the reference to ray based renderer, raycast renderer or shear warp renderer.

setRayBasedRender(VolumeRenderer) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the reference to ray based renderer, raycast renderer or shear warp renderer.

setRayBasedRender(VolumeRenderer) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the reference to ray based renderer, raycast renderer or shear warp renderer.

setRayDelta(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the spacing along the vertex normal rays, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.

setRayDelta(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the spacing along the vertex normal rays, as described in BrainExtraction.pdf, that is part of the image term in the surface evolution.

setRCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setReader(MipavSAXReader) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

Sets the MipavSAXReader.

setReadQT(boolean) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setReadyToDispose(boolean) - Method in class gov.nih.mipav.view.ViewJProgressBar

accessor to allow user to override the automatic closing (until they set this flag to true);

setRealValue(double) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Accessor that sets the realValue to be used when performing the algorithm.

setRecalculateInstanceNumber(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether or not the Instance Number (0020,0013) should be recalculated before saving.

setReceiveAttenuatorSetting(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setReceivingCoil(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRecoInpSize(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setRecommendedReceiveAttenuation(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRecommendedReceiveFrequency(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRecommendedTransmitAttenuation(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRecommendedTransmitFrequency(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setReconstructionMethod(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setRecordButton(JButton) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.JScriptToolBar

Sets the button used to start/stop recording.

setRecorderStatus(int) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Changes the current status of the script recorder and notifies any recorder listeners of the change.

setRecorderStatus(int) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder

Changes the current status of the script recorder and notifies any recorder listeners of the change.

setRecording(boolean) - Method in class gov.nih.mipav.view.ViewControlsImage

Used to set the state for the script recorder.

setRecording(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.JScriptToolBar

Sets whether a script is being recorded and changes the appearance of the button accordingly.

setRecordingMode() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

setRecordRate(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setRecoSize(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

Accessor to set the reco size.

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur

Sets the flag for the red channel.

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep

Sets the flag for the red channel.

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude

Sets the flag for the red channel.

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

Sets the flag for the red channel.

setRed(boolean) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

Sets the flag for the red channel.

setRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

setRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

setRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Accessor that sets the color flag.

setRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the color flag.

setRed(double) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Accessor that sets the red value.

setRed(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setRed1(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setRed2(long) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

setRedArray(int[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setRedBlackLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setRedChannelNumber(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setRedFunction(TransferFunction) - Method in class gov.nih.mipav.model.structures.ModelRGB

Accessor that returns the red transfer function.

setRedGamma(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setRedImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

Accessor that sets the Green Image Source.

setRedOn(boolean) - Method in class gov.nih.mipav.view.JPanelHistogram

Sets the red checkbox on/off.

setRedOn(boolean, boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

Sets the red flag to be on or off.

setRedOn(boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

setRedProcessingRequested(boolean) - Method in class gov.nih.mipav.view.components.JPanelColorChannels

Changes whether the red channel of the input image should be processed.

setReductionX(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setReductionX(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setReductionY(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setReductionY(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setReductionZ(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setReductionZ(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the reduction factor for estimating the initial ellipsoid, as described in BrainExtraction.pdf.

setRedVector(long) - Method in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

setRedWhiteLevel(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setReference(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReferenceFrameNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setReferenceImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the reference image.

setReferenceImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the reference image.

setReferenceImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the reference image.

setReferenceSlice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Accessor which lets you specify the reference slice.

setReferenceSlice(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

allows the user to pass in an OUTSIDE reference slice.

setReferenceSlice(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

allows the user to pass in an OUTSIDE reference slice.

setReferenceVolume(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

allows the user to pass in an OUTSIDE reference volume.

setReferenceVolume(ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

allows the user to pass in an OUTSIDE reference volume.

setReferenceWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the reference weight image.

setReferenceWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the reference weight image.

setReferenceWeightImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the reference weight image.

setReferenceXY(int, Vector3f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Set a talairach / ACPC reference point.

setReferringPhysician(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRefImageNum(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set refImageNum.

setRefImageNum(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set refImageNum.

setReflectedLightHalogenLampMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectedLightHalogenLampVoltage(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectedLightShutter(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflector(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflector(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setReflectorID(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectorMagnification(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectorPosition0(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectorPosition1(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectorPosition2(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setReflectorPosition3(int, int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setRefMark(boolean) - Method in class gov.nih.mipav.view.ViewJComponentRegistration

Sets the reference mark flag.

setRefocusingPulseType(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setRefrInxLensMedium(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setRefrInxMedium(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setRefWgtImage(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

Sets the reference weight image.

setRefWgtImage(ModelSimpleImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

Sets the reference weight image.

setRegButtonEnabled(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Accessor that enables or disables the window region button.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the region flag.

setRegionFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Accessor that sets the region flag.

setRegionGrowAlgo(AlgorithmRegionGrow) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

setRegionGrowAlgo(AlgorithmRegionGrow) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Placeholder.

setRegionGrowAlgo(AlgorithmRegionGrow) - Method in interface gov.nih.mipav.view.dialogs.RegionGrowDialog

Sets the region grow algo associated with this dialog.

setRegionGrowVars(short, short, short, float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the variables used to remember the point where the last region grow was started from.

setRegionLinesDisplay(boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

setRegionMask(int, int, short) - Method in class gov.nih.mipav.model.file.FileCheshireVOI

setRegionMask set the mask of all points in the 4 connected region with a gray scale value of objectValue.

setRegionMaskAll() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

Sets the mask of all points in the 4 connected region with a gray scale value.

setRegionMaskAll() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

Sets the mask of all points in the 4 connected region with a gray scale value.

setRegionMaskAll() - Method in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

setRegionMaskI(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

Sets the mask of all points in the 4 connected region with a gray scale value of objectValue Uses iteration.

setRegionMaskI(int, int, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

Sets the mask of all points in the 4 connected region with a gray scale value of objectValue Uses iteration.

setRegionMaskIFalse(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

Sets the mask of all points in the 4 connected region with a gray scale value of objectValue.

setRegionOutMaskI(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

Sets the mask of all points in the 4 connected region with a srcPaintMask equal to false Uses iteration.

setRegionOutMaskI(int, int, short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

Sets the mask of all points in the 4 connected region with a gray scale value of objectValue Uses iteration.

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

DOCUMENT ME!

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setRegister(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

setRegisteredDWIImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

Sets the with-in volume registered 4D DWI image.

setRegisteredMatrices(TransMatrix[], String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

Sets the within-volume array of matrices.

setRegisterTo(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set registerTo.

setRegistrationDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegistrationDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegistrationDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegistrationTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegistrationTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegistrationTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRegular(char) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supply the value of regular character.

setRegular(char) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supply the value of regular character.

setRegular(char) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supply the value of regular character.

setRegularizer(libdt.CovMatrix, libdt.cov_reg_type, double) - Method in class gov.nih.mipav.model.algorithms.libdt

setRegularizer(libdt.Dytex, libdt.DytexRegOptions) - Method in class gov.nih.mipav.model.algorithms.libdt

setReleasedSliderValue(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setRelFocusPosition1(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setRelFocusPosition2(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setRemapHighestValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

setRemapHighestValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

setRemapMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

Accessor that sets the remap mode.

setRemapMode(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Accessor that sets the remap mode.

setRemoveDim(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset

Accessor that sets the Dimension to remove according to the parameter.

setRenderer(ContourPlot.Renderer) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback

setRenderer(ContourPlot.Renderer) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas

Sets the renderer of this canvas.

setRenderer(VolumeTriPlanarRender) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setRenderer(VolumeTriPlanarRenderBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setRenderer(VolumeTriPlanarRender, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

setRenderMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Change the camera model.

setRenderMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

Change the camera model.

setRenderMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageShearWarp

Change the camera model.

setRenderMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Change the camera model.

setRenderMode(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Enable perspective projection rendering; otherwise use orthographic projection.

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Enable perspective projection rendering; otherwise use orthographic projection.

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Enable perspective projection rendering; otherwise use orthographic projection.

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Enable perspective projection rendering; otherwise use orthographic projection.

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Enable perspective projection rendering; otherwise use orthographic projection.

setRenderPerspective(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Switches between orthographic and perspective projection.

setRenderSurfaceColors(Color) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

If the color LUT defined for mean curvature pseudocolor mapping is defined, then use it to reset the colors.

setRepetitionTime(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setRepetitionTime(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRepetitionTime(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setRepetitionTime(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setRequestedNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setResampledT2Image(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

Sets the resampled T2 structural image, from the DTIPipeline pre-processing panel, or by the user loading the file disk.

setResampleStatusBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

setRescaleIntercept(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the rescale intercept.

setRescaleSlope(double) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the rescale slope.

setResearchMode(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

setReserved(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setResetEnabled(boolean) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Accessor that enables or disables the reset item.

SetResetIteNumber() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG

SetResetting(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG

setResidualBlocks(Vector<CeresSolver.ResidualBlock>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program

setResolution(float) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

setResolution3Dim(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Accessor that sets the resolution for the 3rd dimension.

setResolution4Dim(float) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Accessor that sets the resolution for the 4th dimension.

setResolutions(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setResolutions(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

setResolutions(float[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the resolutions of the image.

setResolutions(float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the resolutions to the specific value for a specific slice indicated by the index parameter.

setResolutions(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setResolutions(float, float) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the resolution correction factor in both x and y directions.

setResolutions(float, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the resolutions of the image, on a per dimension basis.

setResolutions(int) - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets the resolutions from the variable array based on the orientation of the image.

setResolutions(int, float[]) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the resolutions to the specific value for a specific slice indicated by the index parameter.

setResolutionSwitches(ArrayList<Integer>) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

setResolutionTag() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Set the resolution tag in front view.

setResolutionUnit3Dim(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Accessor that sets the resolution unit for the 3rd dimension.

setResolutionUnit4Dim(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Accessor that sets the resolution unit for the 4th dimension.

setResultImage(ModelImage) - Method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase

Changes the image generated by the action we are recording.

SetReturnValue(boolean) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm

SetReverseFace(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Flag to reverse the direction of the triangle faces inside the vertex shader.

setRFAToolbarVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set the RFA button visible or not.

setRfBWCb(double, double) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream

setRfBWCb(double, double) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream

setRfBWCr(double, double) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream

setRfBWCr(double, double) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream

setRfBWY(double, double) - Method in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream

setRfBWY(double, double) - Method in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream

setRGB() - Method in class gov.nih.mipav.model.file.FileImageXML

sets up the model RGB while parsing XML header after all LUValues have been saved in the LUT vector.

setRGB(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an opaque RGB value at the position currently referenced by this Pixel.

setRGB(ModelRGB) - Method in class gov.nih.mipav.model.file.FileHistoLUT

Accessor to set the RGB.

SetRGB(byte, byte, byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

setRGB_fromDouble(double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an opaque RGB value at the position currently referenced by this Pixel.

setRGB_fromDouble(double, double, double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the red, green and blue value of this pixel.

setRGB_fromDouble_preserveAlpha(double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an RGB value at the position currently referenced by this Pixel.

setRGB_fromDouble_preserveAlpha(double, double, double) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase

Sets the red, green and blue value of this pixel.

setRGB_preserveAlpha(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets an RGB value at the position currently referenced by this Pixel.

SetRGBA(byte, byte, byte, byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

setRGBAOrder(boolean) - Method in class gov.nih.mipav.model.file.FileRaw

setRGBAOrder(boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

DOCUMENT ME!

setRGBChannelFilter(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE

RGB images are histogram equalized by 'channel.'

setRGBChannelFilter(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

RGB images are histogram equalized by 'channel.'

setRGBChannelFilter(boolean, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization

RGB images are local-normalized by 'channel.'

setRGBChannelFilter(int, boolean, boolean, boolean, float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

RGB images are median filtered by 'channel.'

setRGBChannelFilter(int, boolean, boolean, boolean, long, long, long) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

If filterType == SEPARATE_COMPONENT, RGB images are mean filtered by 'channel.'

setRGBEqual() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets the red, green, and blue values to equal values.

setRGBGraphics() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets the red, green, and blue values to computer graphic values.

setRGBOffset(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets the RGBOffset.

setRGBOffset(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

Accessor that sets the RGBOffset.

setRGBOffset(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

Accessor that sets the RGBOffset.

setRGBOffset(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

Accessor that sets the RGBOffset.

setRGBOffset(int) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Accessor that sets the RGBOffset.

setRGBOffset(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets the RGBOffset.

setRGBPaintComponents(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setRGBs(ModelRGB, ModelRGB) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate

Sets the RGB LUT table for ARGB image A and image B.

setRGBT(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

SetRGBT(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Sets the ModelRGB for the iImage.

setRGBTa(ModelRGB) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.PatientSlice

Causes the data to be redrawn with new RGBTA values:

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Accessor that sets the RGB lookup table for image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Set the RGB table of imageA.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

setRGBTA.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Update the ModelRGB associated with the separate texture, and regenerate the ImageComponente3D volume texture.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the RGB table for image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the RGB table for image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

The following 2 functions set the RGB tables for ARGB images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

The following 2 functions set the RGB tables for ARGB images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the RGB table for image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

The following 2 functions set the RGB tables for images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

Update the ModelRGB associated with the separate texture, and regenerate the ImageComponente3D volume texture.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets the RGB table for the ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Sets the RGB table for the ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Sets the RGB table for the ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameBase

Set the RGB table for image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

The following 2 functions set the RGB tables for images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

The following 2 functions set the RGB tables for images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

The following 2 functions set the RGB tables for ARGB images A and B.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the RGB table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the RGB LUT table for ARGB image A.

setRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the RGB table for ARGB image A.

setRGBTb(ModelRGB) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set rgbtb

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.PatientSlice

Causes the data to be redrawn with new RGBTB values:

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Accessor that sets the RGB lookup table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Get the RGB table of imageB.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

setRGBTB.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Update the ModelRGB associated with the ModelImage texture, and regenerate the ImageComponente3D volume texture.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Sets the RGB table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Sets the RGB table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Sets the RGB table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set rgbtb

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets the RGB table for the ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Sets the RGB table for the ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Sets the RGB table for the ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the RGB table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameBase

Set the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the RGB table for image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the RGB LUT table for ARGB image B.

setRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the RGB table for image B.

setRGBValues(float, float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets the red, green, and blue values to the given parameters.

setRight(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the right side value.

setRight(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the right side value.

setRight(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt

SetRight(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

SetRightLine(float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the right-line parameter to the GLSL Shader Program.

setRightList(JList) - Method in class gov.nih.mipav.view.JPanelListController

Convience method to set list B.

setRightPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setRightPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setRightPanelCanvas() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Update the right panel when finish loading Endoscopy images.

setRightPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most right point marker for +acpc to +tlrc transformation in dicom ordering.

setRightPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets right label based on the point.

setRightPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets right label based on the point.

setRightTable(JTable) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel

DOCUMENT ME!

setRightTree(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

Convience method to set tree B.

setRightVector(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setRigid(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setRLCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRLETAMARencapsulatedOffset(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom

setRMS(float) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setRNormal(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setROn(boolean) - Method in class gov.nih.mipav.model.structures.ModelRGB

Sets if the red channel to the boolean value.

setRoot(AlgorithmPowerWatershed.RbtElt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setRootDir(File) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel

setRotate(double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the rotation (2D) of transformation matrix.

setRotate(double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the rotation (2D) of transformation matrix.

setRotate(double, double, double, int) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets rotation (3D) of transformation matrix.

setRotate(double, double, double, int) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets rotation (3D) of transformation matrix.

setRotate(TransMatrix) - Method in class gov.nih.mipav.view.ViewJComponentSingleRegistration

Sets the TransMatrix for the set of VOIPoints contained in this class.

setRotate(Vector3d, Vector3d, Vector3d) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets rotation (3D) of transformation matrix.

setRotate(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets rotation (3D) of transformation matrix.

setRotation(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets the rotation of the glyph for this point

setRotation(DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets the rotation of the glyph for this point

setRotationAngle(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Set the rotation angle with the camera takes snapshot.

setRotationAngle(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Set the rotation angel for the camera control.

setRotationAngle(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the rotation angle for the camera control.

setRotationAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Set the roation axis ( X, Y, Z Axis ) when the camera takes snapshot.

setRotationAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Set the rotation axis for the camera control.

setRotationAxis(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the rotation axis for the camera control.

setRotationCenter(float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the coordinates of the point the will be the new image rotation center.

setRotationCenter(float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Sets the coordinates of the point the will be the new image rotation center.

setRotationCutoffValue(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setRotationDirection(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set rotationDirection.

setRotationExtent(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setRotationScaleFactor(float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

the rotationScaleFactor is used to change how fast the camera moves around the object ranging from 1%, the slowest, to 100%, the fastest

SetRotationSteps(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the number of rotation steps.

setRound(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setRoutine(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

setRow(int) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

SetRow(int, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

setRowDependent(boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

setRowDependent -- sets the row dependent flag.

setRows(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

SetRowSize(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

setRowVectorX(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRowVectorY(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRowVectorZ(double) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setRPCPortNum(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set RPCPortNum.

setrr(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the Talairach center voxel inidces in the dicom ordered original image.

setrrArray(Vector3f[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the Talairach center voxel inidces in the dicom ordered original image.

setRRCycles(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setRRHistogram(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setRs(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

setRs(double) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

setRs(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

setRs(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

setRs(double) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

setRunning(boolean) - Method in class gov.nih.mipav.model.scripting.ScriptRunner

Changes the flag indicating whether a script is currently being run.

setRunningInSeparateThread(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the running in separate thread flag which controls how the progress bar is updated.

setRunningInSeparateThread(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

setS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

SetS() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setSafmin(double) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

setSameZPosition(boolean) - Method in class gov.nih.mipav.model.file.FileInfoSTK

DOCUMENT ME!

setSampleExternRef(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

DOCUMENT ME!

setSampleNumber(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

DOCUMENT ME!

setSampleRate(int) - Method in class gov.nih.mipav.view.LineMeter

adjusts the number of samples to be sent to the history in milliseconds.

setSamplesPerPixel(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSamplingRate(int, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setSamplingRate(int, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

setSAR(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSARMonitored(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATSelections(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATXLoc1(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATXLoc2(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATXThick(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATYLoc1(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATYLoc2(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATYThick(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATZLoc1(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATZLoc2(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSATZThick(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSaveAs() - Method in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

setSaveAs(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the "save as" flag.

setSaveBrainMesh(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Sets whether to save a surface mesh of the extracted brain.

setSaveInSubdirectory(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the "save as" flag.

setSaveOptions(FileWriteOptions) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Changes the set of options used to save the image.

setScalarNames(String[]) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setScale(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

setScale(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setScale(float, float, float) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF

setScaleHeight(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setScaleImage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

setScaleMaxValue(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the max scale value (from the combo box).

setScales(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererMapColor

Specify the non-negative weights to apply to the RGB channels.

setScaleSlope(float) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

SetScaleSteps(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the number of scale steps.

setScaleWidth(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setScaleX(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the x scale.

setScaleY(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the y scale.

setScaling(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets the scaling of this point's glyph

setScaling(DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointDetails

Sets the scaling of this point's glyph

setScalingFactor1(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setScalingFactor2(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setScanAcquisitionNumber(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScanARRs(int) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScanDate(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the scan date.

setScanDateTime(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the date & time (date + T + time).

setScanID(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the scan ID.

setScanMatrixX(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScanMatrixY(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScannerPosition(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions

Sets the Scanner position label.

setScannerPosition(Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the Scanner position label.

setScannerQuantificationFactor(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setScanningSequence(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setScanningSequence(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setScanNum(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows a maximum of 10 characters to set the scannum string.

setScanNum(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows a maximum of 10 characters to set the scannum string.

setScanNum(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows a maximum of 10 characters to set the scannum string.

setScanOptions(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setScanPercentage(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setScanProtocolName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScanTime(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setScanTime(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the scan time.

setScanType(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setScatterCorrected(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setScatterCorrectionMethod(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

SetSceneRotation(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setSceneState(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets the scene state appropriately, so that the slices that are supposed to be visible are showing, the ones that aren't are hidden, and the sliders are starting at the appropriate value.

setSceneState(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Sets the scene state appropriately.

setSceneState(Object) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the scene state appropriately, so that the slices that are supposed to be visible are showing, the ones that aren't are hidden, and the sliders are starting at the appropriate value.

setSCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setScilType(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setScIma(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSclInter(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets the data additive factor.

setSclSlope(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets the data scaling multiplicative factor.

setScreenImageResolutions(float[], float) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

Sets the correct resolutions for the image that is created by captureImage.

setScript(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder

Changes the script being recorded by this class.

setScriptFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

setScriptFile(String) - Static method in class gov.nih.mipav.view.Preferences

DOCUMENT ME!

setScriptImageVarActions(String[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

setScriptImageVarLabels(String[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

setScriptImageVars(String[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel

DOCUMENT ME!

setScriptRunning(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Sets whether the dialog is being run by a script.

setScriptsDirectory(String) - Static method in class gov.nih.mipav.view.Preferences

Sets the scripts directory to the new scripts directory.

setScriptVOIs(ScriptVOI[]) - Method in class gov.nih.mipav.view.dialogs.ScriptImage

setScrollPaneTop() - Method in class gov.nih.mipav.view.dialogs.JDialogText

Sets the caret to the top of the scroll pane.

setScSer(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSculpt(int, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the sculpt image

setSculptDrawn(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

setSculptImage(byte[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

setSculptShape(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Set the sculpt shape, either lines or rectangle.

setSculptShape(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

Set the sculpt shape, either lines or rectangle.

setSeamCell(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

setSearchAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

setSearchAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

setSearchAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

setSearchAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

setSearchWindowSide(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets the search window side.

setSecondAlgorithm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration

setSecondaryCaptureTags(boolean, int) - Method in class gov.nih.mipav.model.file.FileInfoDicom

Changes a few dicom tags associated with a secondary capture image (marking it as having been created with mipav).

setSecondaryPluginsDir(File) - Static method in class gov.nih.mipav.view.ViewUserInterface

setSecondImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setSecondImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setSecondImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor to set the secondImage.

setSecondImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Accessor to set the secondImage.

setSecondStageErosion(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Sets whether or not second stage erosion occurs taking edge values exceeding median by a factor >= aboveMedian to zero.

setSecondStageErosion(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Sets whether or not the second stage performing edge erosion occurs.

setSectionThickness(String[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

SetSeed(long, long, long) - Method in class gov.nih.mipav.model.algorithms.Fastfit

setSeed2DPt(Point) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Sets the seed point for the flood fill for a 2D image region grow.

setSeed3DPt(Point3D) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Sets the point at which a the flood filling begins.

setSeedVector(Vector3f[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed

Sets the seed vector.

setSegmentationImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).

setSegmentationImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).

setSegmentationImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).

setSegmentationImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).

setSegmentationType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the segmentation type (BOTH_FUZZY_HARD, FUZZY, or HARD).

setSegmentationType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the segmentation type (BOTH_FUZZY_HARD, FUZZY, or HARD).

setSelected(boolean) - Method in class gov.nih.mipav.view.BorderedButton

DOCUMENT ME!

setSelected(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

setSelected(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

setSelectedBorderColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the color of the selected image borders.

setSelectedBorderColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the color of the selected image borders.

setSelectedBorderSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the selected image border size.

setSelectedBorderSize(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the selected image border size.

setSelectedFonts() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

setSelectedIndex(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Sets the light to selected.

setSelectedIndex(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Sets the light to selected.

setSelectedKeys(ArrayList<FileDicomKey>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags

Method used for loading profiles into the panel.

setSelectedKeys(ArrayList<FileDicomKey>) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags

setSelectedLight(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the light for the given light index.

setSelectedList(boolean) - Method in class gov.nih.mipav.view.JPanelChecklist

Sets whether or not aall checkboxes have been selected.

setSelectedList(boolean[]) - Method in class gov.nih.mipav.view.JPanelChecklist

Set the the checkbox list from the script dialog.

setSelectedPoint(int) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the selected point.

setSelectedStatistics(boolean[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Sets the list of selected statistics to calculate.

setSelectedTabIndex(int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

Sets the tabbed pane selected panel based on the input index.

setSelectedTabIndex(int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

setSelectedVOI(VOI) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

DOCUMENT ME!

setSelectedVOI(VOIBase) - Method in class gov.nih.mipav.view.ViewJPopupVOI

Called from the VOIManager class.

setSelectedVOI(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from the VOIManager when a new VOI is selected by the mouse.

setSelectionOffset(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

setSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel

setSensitivityArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setSensorModel(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setSensorType(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setSENW(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if southeast-northwest offset direction is calculated.

setSENW(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if southeast-northwest offset direction is calculated.

setSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Accessor that sets whether or not the separable convolution kernel is used.

setSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Accessor that sets whether or not the separable convolution kernel is used.

setSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Accessor that sets whether or not the separable convolution kernel is used.

setSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

setSeparateLUT(ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setSeparateThread(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Accessor that sets the separate thread flag.

setSeparateThread(boolean) - Method in class gov.nih.mipav.view.ViewJProgressBar

Changes whether the algorithm which is using this progress bar is running in its own thread.

setSequenceAuthor(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSequenceName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSequenceName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSequencePrgName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSequenceType(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSequenceVariant(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSequenceWkcName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSeries(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesDate(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesHeaderBlocks(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesHeaderID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesHeaderRevisionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesInstanceUID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID

Sets Series Instance UID.

setSeriesNumber(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSeriesNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesProcessName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesPSDName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesRawDataSystemID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesSystemGenerationID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesTableMinMax() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

Sets the series table's min and max column widths.

setSeriesTaskID(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesTime(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSeriesTime(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSeriesType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSessionErr(short) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supply the value of session error.

setSessionErr(short) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supply the value of session error.

setSessionErr(short) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supply the value of session error.

setSex(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set subject's sex.

setShade(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if the cluster shade is calculated

setShade(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if the cluster shade is calculated

setShape(Shape3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList.Item

Set the shape for rendering the annotated point to that specified.

setShape(Shape3D[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

sets the array of Shape3D objects:

SetShapeParameterUpdateConstraints(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Sets user-specified shape parameter update constraints.

setSharedAnnotationPanel(JPanelAnnotations) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

setSharedDirectory(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setSharedDirectory(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

setShift(int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

setShift(int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

SetShift(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

setShiftDown(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME

setShiftT(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the shiftT value.

setShiftToDivide(int) - Method in class gov.nih.mipav.model.file.FileRaw

Used in reading and writing boolean

setShiftToDivide(int) - Method in class gov.nih.mipav.model.file.FileRawChunk

Used in reading and writing boolean

setShiftX(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the shiftX value.

setShiftY(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the shiftY value.

setShiftZ(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Accessor that sets the shiftZ value.

setShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the surface shininess:

setShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the surface shininess:

setShininess(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the surface shininess:.

setShininess(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the surface shininess:.

setShort(int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

2D fast version of set that does NOT perform bounds checking.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the short data in double format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the to set short data in float format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the short value in unsigned short format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the short value in unsigned short format.

setShort(int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value.

setShortcutRecording(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the UI to either be/not be recording action command.

setShortMask(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

Sets this classes short mask to the new mask.

setShowAllParameters(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setShowBound(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

setShowBoundingRect(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets whether the bounding rectangle should be drawn.

setShowBoxFrame(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turn the volume bounding box frame on/off.

setShowDiagonal(boolean) - Method in class gov.nih.mipav.view.PatientSlice

Sets the export for this Slice to be along a diagonal.

setShowDICOMOverlays(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether to show the DICOM overlays.

setShowFrame(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

DOCUMENT ME!

setShowFrame(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

DOCUMENT ME!

setShowGraph(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set showGraph.

setShowImageOverlays(boolean) - Static method in class gov.nih.mipav.view.Preferences

Sets whether to show the Image overlays.

setShowIntermediateImages(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set whether intermediate images will be produced.

setShowMagIntensity(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether to show intensity in mag. box

setShowMAPplot(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setShowOrientationCube(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

setShowOrientationCube(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turn the orientation cube on/off.

setShowProgress(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility

setShowProgress(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP

setShowSlice(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

setShowSliceNum(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether the slice number will be shown in the lower left hand corner of the image.

setShowSliceNumber(boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

In 3D whether to show number for complete frame.

setShowSliceNumber(boolean) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets whether the slice number is shown.

setShowTotals(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

tells the algorithm to total the property calculations.

setShowTotals(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions

Set the showTotal calculation flag.

setShrink(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the shrink.

setShrink(float) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the shrink.

setSICenter(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSiemensStudyDateDD(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSiemensStudyDateMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSiemensStudyDateYYYY(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSiemensStudyTimeHH(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSiemensStudyTimeMM(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSiemensStudyTimeSS(int) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setSigma(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

setSigma(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

setSigma(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

setSigma(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

setSigma(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

setsigma1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

setsigma2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

Accessor that sets sigma2.

setsigma3(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

setSigmasGUI(JPanelSigmas) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Sets up the GUI containing the sigmas used in an algorithm (usually Gaussian sigmas), based on the script action's parameters.

setSigmaU(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setSigmaU(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the prerotation horizontal standard deviation variable.

setSigmaV(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setSigmaV(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the prerotation vertical standard deviation variable.

setSigmaX(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets X dimension Gaussian scale.

setSigmaX(float) - Method in class gov.nih.mipav.view.components.JPanelSigmas

Changes the sigma value in the x direction.

setSigmaY(double) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets Y dimension Gaussian scale.

setSigmaY(float) - Method in class gov.nih.mipav.view.components.JPanelSigmas

Changes the sigma value in the y direction.

setSigmaZ(float) - Method in class gov.nih.mipav.view.components.JPanelSigmas

Changes the un-normalized sigma value in the z direction.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSigmoidFilter(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3

Set the parameters for the sigmoid function through which the blurred gradient magnitude image is processed.

setSimilarityWindowSide(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Accessor that sets the similarity window side.

setSize(int, int) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setSize(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy

setSize(Dimension) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy

SetSize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

SetSize(int, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

SetSize(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

SetSize(int, int, double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

setSizeArray(int[]) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

setSizeLimit(int) - Method in interface gov.nih.mipav.view.PaintGrowListener

Set a bound on the size of the region we are growing.

setSizeLimit(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets sizeLimit for regionGrow.

setSizeOfHeader(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the size of the header which is always 348.

setSizeOfHeader(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setSizeOfHeader(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the size of the header which is always 348.

setSizeOfHeader(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

setSizeX(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Accessor that sets the x size.

setSizeY(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Accessor that sets the y size.

setSizeZ(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Accessor that sets the z size.

setSkew(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets skew part of 2D matrix.

setSkew(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets skew part of 2D matrix.

setSkew(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the skew parts of 3D matrix (4D Homogenous).

setSkew(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the skew parts of 3D matrix (4D Homogenous).

setSkipTime(float) - Method in class gov.nih.mipav.model.file.FileAvi

setSlice(boolean, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Sets the slice information for the shader.

setSlice(float) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Changes the displayed texture based on the new value for m_iSlice.

setSlice(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Sets the local slice value.

setSlice(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Sets the local slice value.

setSlice(int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction

DOCUMENT ME!

setSlice(int) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the slice in all frames displaying this image.

setSlice(int) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set slice

setSlice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

setSlice(int) - Method in class gov.nih.mipav.view.JFrameHistogram

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

setSlice.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

setSlice.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

ViewImageUpdateInterface, unused here.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

sets the slice/frame # for display.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Funcions do nothing, but extends ViewJFrameBase.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Does nothing but must instantiate for this to implements ViewImageUpdateInterface.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Does nothing but must instantiate for this to implements ViewImageUpdateInterface.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Accessor that sets the slice of the image component.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Used in ViewImageUpdateInterface.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Does nothing but must instantiate for this to be a subclass of ViewJFrameBase.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Does nothing in this.

setSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

setSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set slice

setSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setSlice(int) - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

setSlice.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Accessor that sets the slice of the image.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Accessor that sets the slice of the image.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the slice of the image.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets the slice to be displayed and updates title frame.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Sets the slice to be displayed and updates title frame.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Does nothing in this class.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Does nothing in this class.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the slice to be displayed and updates title frame.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Used in ViewImageUpdateInterface.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Does nothing.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Does nothing.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the slice to be displayed and updates title frame.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Not used.

setSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Does nothing.

setSlice(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

setSlice(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Update the title bar and resolution information.

SetSlice(boolean, int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect

setSliceAngulation(double[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setSliceBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Method to set the brightness and contrast of the animate slice.

setSliceBrightness(int, float) - Method in class gov.nih.mipav.view.ViewJComponentPreviewImage

Method to set the brightness and contrast of the animate slice.

setSliceCode(byte) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setSliceColor(Color, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the color of the x slice frame.

setSliceColor(Color, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the color of the x slice frame.

setSliceContourStatistic(String, int, String, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

Stores the statistic for a particular contour on a particular slice of a VOI.

setSliceCount(int) - Method in class gov.nih.mipav.view.JPanelStatisticsList

Controls how many slices are being used for statistics calculations.

setSliceDim(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setSliceDistanceFlag(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Sets whether the largest slice distance is calculated.

setSliceDuration(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets the sliceDuration variable.

setSliceEnd(long) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setSliceFromPlane(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the position of the slices in the SurfaceRender and PlaneRender objects.

setSliceFromPlane(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the position of the slices in the SurfaceRender and PlaneRender objects.

setSliceFromSurface(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the position of the slices in the PlaneRender.

setSliceFromSurface(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the position of the slices in the PlaneRender.

setSliceGradient(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setSliceGradientDuration(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setSliceGradientLimit(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setSliceHairColor(int, Color) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.

setSliceHairColor(int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.

setSliceHairColor(int, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Sets the default color for the SliceHairColor.

setSliceHairColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.

setSliceHairColor(int, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.

setSliceIndex(int, boolean) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice

setSliceIndex(int, boolean) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice

setSliceIndex(int, int, boolean) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice

setSliceIndex(int, int, boolean) - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice

setSliceInfo(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setSliceLocation(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSliceMultiplier(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSliceNum(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset

Accessor that sets the slice number to be used to the parameter.

setSliceNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setSliceOpacity(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the transparency value for the slice.

setSliceOpacity(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the transparency value for the slice.

SetSliceOpacity(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

SetSliceOpacity(int, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Sets the opacity for the given plane.

setSliceOrient(int) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setSliceOrientation(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setSliceQuantity(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSlices(float, float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

Sets verticies based on dimensions and mode.

setSlices(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the slice index for each plane in the frame and components.

setSlices(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the slice index for each plane in the frame and components.

setSlices(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the slice index for each plane in the frame and components.

setSliceSeparationMode(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

Accessor to set the slice separation mode.

setSlicesFromFrame(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Called from the "normal" image component, sets the slices for the tri planar view to display.

setSlicesFromFrame(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Called from the "normal" image component, sets the slices for the tri planar view to display.

setSlicesFromFrame(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Called from the "normal" image component, sets the slices for the tri planar view to display.

setSliceSpacingCoarse(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Set the desired "coarse" spacing between slices.

setSliceSpacingCoarse(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the desired "coarse" spacing between slices.

setSliceSpacingFine(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Set the desired "fine" spacing between slices.

setSliceSpacingFine(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the desired "fine" spacing between slices.

setSliceStart(long) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

DOCUMENT ME!

setSliceStatistic(String, int, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

Stores the statistic for all the contours of a VOI that exist on a particular slice.

setSliceString(String) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the string painted on the lower left.

setSlicesWithTimeOffsets(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets slicesWithTimeOffsets.

setSliceThickness(float) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets the thickness of the image slices.

setSliceThickness(float) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting sliceThickness

setSliceThicknessDisclaimer(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSliceType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Accessor which lets you change the type of slice to be inserted.

setSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Sets the slider, the label "Z (1-100)" and the labels underneath the slider to enabled or disabled, depending on flag.

setSliderEnabled(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Sets the x slider and the labels beside and beneath it to the state given by flag.

setSliderFlag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Flag to indicate the first time slider name changes.

setSliderFlag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Flag to indicate the first time slider name changes.

setSmallestImagePixelValue(int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSmartThresholdUI(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod

setSmax(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets smax.

setSmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets smax.

setSmax(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets smax. if supplied value is less than smin, the smin gets reset to the supplied value as well, so that smin is still no greater than smax.

setSmin(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets smin.

setSmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets smin.

setSmin(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets smin. if supplied value is greater than smax, the smax gets reset to the supplied value as well, so that smax is still no less than smin.

setSmoothCurvature(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

setSNormal(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSoftwareVersions(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSolverType(SolverType) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

setSOPInstanceUID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID

Sets SOP Instance UID.

setSortingStatus(int, int) - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

setSource(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setSourceBitPix(short) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets sourceBitPix; any value other than 1, 8, 16, 32, 64, 128, or 24 gets set to the disallowed trap value, -1.

setSourceFile(String) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setSourceImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Accessor that sets the source image.

setSourceImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Accessor that sets the source image.

setSourceImage(ModelImage[]) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Accessor that sets the array of source images.

setSourceImage(ModelImage[]) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the array of source images.

setSourceType(short) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

accessor to supply coded datatype.

setSouth(AlgorithmNetworkSnake.PixelGrid.PixelGridNode) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setSp(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo

setSpace() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

Initializes the text fields for the dialog.

setSpace(String) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting spaceString

setSpaceSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Enable perspective projection rendering; otherwise use orthographic projection.

setSpaceSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Set the raytrace region space size.

setSpaceSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Get the ray trace space size.

setSpacingBetweenSlices(double) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

SetSparseMatrixConstant(CeresSolver.SparseMatrix, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

setSpecificCharacterSet(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSpecimen(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setSpecimenSpecies(String[]) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setSpectralScan(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setSpectStudyGeneral(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setSpectStudyReconstructedData(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setSpecular(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the specular color for the vertex.

setSpecular(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Set vertex material specular color.

setSpecular(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Sets the specular color of the surface:

setSpecular(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Sets the specular color of the surface:

setSpecular(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Set the specular color for the vertex.

setSpecular(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Sets the specular color of the surface:.

setSpecular(ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Sets the specular color of the surface:.

setSpinnerValues(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the spinner values based on image type.

setSpinnerValues(int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Sets the spinner values based on image type.

setSplineOrder(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setSplineOrder(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

setSplineOrder(int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

setSplit(boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Sets the split flag.

setSplit(boolean) - Method in class gov.nih.mipav.view.RubberbandLine

setSpliteratorMinimumSplitSize(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img

Sets the minimum number of elements in a split of a Spliterator of this Img.

setSplitWeightVector(Vector<Vector<Double>>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

setSprings(Component, Component, Component, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

***************************************************************************************************** Setting layout constraints.********************************************************************************************** *******

setSrc(BlkImgDataSrc) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

setSrc(BlkImgDataSrc) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor

setSrcImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the source image of the algorithm

setSrcImage(ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

SetSrcShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Sets the shape to warp from.

SetSrcShape(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear

Sets the shape to warp from.

setSrcThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the srcThreshold value

setSSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Accessor that sets the search window size.

setStageCalibrated(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setStageLabel(String, Float, Float, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setStagePositionX(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setStagePositionY(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setStageXPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setStageYPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setStandardDeviation(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if gray level coordinate matrix standard deviation is calculated.

setStandardDeviation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if gray level coordinate matrix standard deviation is calculated.

setStartAngle(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set startAngle.

setStartCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets the start calender to the calendar given.

setStartDay(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Displays the starting day in the startDayBox combobox.

setStartField(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supplies the submitted value to the start_field variable.

setStartField(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supplies the submitted value to the start_field variable.

setStartField(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supplies the submitted value to the start_field variable.

setStartHorizontalBedPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStartIndex(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Set the index of the vertex in the triangle mesh where the Geodesic curve is to start.

setStartIndex(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Set the index of the vertex in the triangle mesh where the Geodesic curve is to start.

setStartIndices(int[], boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the indices of the triangle that the start point is located in.

setStartIndices(int[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the indices of the triangle that the start point is located in.

setStartLocation(double, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets the start location of the specified axis.

setStartLocations(double[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets start locations of each axis.

setStartLocations(double[]) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets start locations of each axis.

setStartMonth(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Displays the starting month in the startMonthBox combobox.

setStartNumber(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the number to append to the multi file save (i.e., if you want test00.tif to be the first file, 0 is the start number and 2 is the digit number).

setStartPoint(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setStartPoint(Point3f, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Sets the start point of the geodesic curve on the mesh.

setStartPoint(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Sets the start point of the geodesic curve on the mesh.

setStartPosition(long) - Method in class gov.nih.mipav.model.file.FileRaw

DOCUMENT ME!

setStartRange(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets the starting range of histogram.

setStartSlice(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setStartSlice(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the start slice for X, Y, or Z processing.

setStartSurface(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

The start and end surfaces ensure that the points on the geodesic curve all fall on one mesh, and that the algorithm isn't trying to find a path between two unconnected meshes.

setStartSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

The start and end surfaces ensure that the points on the geodesic curve all fall on one mesh, and that the algorithm isn't trying to find a path between two unconnected meshes.

SetStartTemperature(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA

start temperature.

setStartTime() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the start time to the current time.

setStartTime() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

Sets the start time to the current time.

setStartX(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStartY(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStartYear(int) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Displays the starting year in the startYearBox combobox.

setStartZ(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStatAux(float[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets statAux.

setState(ClassificationWidgetState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Sets the ClassificationWidgetState of the widget.

setState(ClassificationWidgetState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Sets the ClassificationWidgetState, representing the GLSL shader program parameters.

setState(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Set the state at the beginning of vector array.

setState(Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector

Set the state at the beginning of vector array.

setState(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

SetState(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setStaticInvSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the static inverse slider and the labels beside and beneath it to the state given by flag.

setStaticSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the static slider and the labels beside and beneath it to the state given by flag.

setStaticStudyGeneral(boolean) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStation(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setStdDev(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Accessor that sets the standard deviation.

setStdDev(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Accessor that sets the standard deviastion.

setStdEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Enable auto snapshot buttons.

setSteeringStepSize(float) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setStepGazeDist(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the current gaze distance for looking ahead down the path.

setStepGazeDist(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the current gaze distance for looking ahead down the path.

setStepSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Enable perspective projection rendering; otherwise use orthographic projection.

setStepSize() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Enable perspective projection rendering; otherwise use orthographic projection.

setStepSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Set the raytrace step size.

setStepSize(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Change the camera model.

SetStepSize(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

Sets the step size shader parameter.

SetStepSize(VolumeImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

Sets the step size shader parameter.

setStepSizeFile(String) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set stepSizeFile.

setStereo(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

setStereo(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Enable/disable stereo rendering.

setStevensBeta(float) - Method in class gov.nih.mipav.view.ColorWheel

setStiffness(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Set the stiffness of the mesh, as described in BrainExtraction.pdf, that is part of the surface normal term in the surface evolution.

setStiffness(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Set the stiffness of the mesh, as described in BrainExtraction.pdf, that is part of the surface normal term in the surface evolution.

setStiffness(float) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Set the stiffness of the mesh that is part of the surface normal term in the surface evolution.

setStop() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Tells the thread to stop (does not call thread.stop(): unsafe).

setStop() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver.RunnerThread

DOCUMENT ME!

setStop() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

Stops the receiver thread.

setStopSlice(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Buttons used for the host tab

setStr - Static variable in class gov.nih.mipav.model.file.FileImageXML

array of strings representing the tags under in the xml schema.

setStr(int, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object

Sets a string value in a DICOM object.

setstring(String) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

setstring(String) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setString(int, MetadataExtractor.StringValue) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

setString(int, MetadataExtractor.StringValue) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

setString(int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a String value for the specified tag.

setString(String, int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Verifies string is not larger than length; strings larger than length, are clipped before being returned.

setString(String, int) - Method in class gov.nih.mipav.model.file.FileInfoMGH

verifies string is not larger than len length; strings larger than len, are clipped before being returned.

setString(String, int) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

verifies string is not larger than len length; strings larger than len, are clipped before being returned.

setString(String, int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Verifies string is not larger than length; strings larger than length, are clipped before being returned.

setString(String, int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

verifies string is not larger than len length; strings larger than len, are clipped before being returned.

setStringArray(int, String[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a String[] (array) for the specified tag.

setStringOverride(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the string painted on the lower left.

setStringValue(int, MetadataExtractor.StringValue) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a StringValue value for the specified tag.

setStringValueArray(int, MetadataExtractor.StringValue[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Sets a StringValue[] (array) for the specified tag.

setStruckOkayButton(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor

setStruckOkayButton(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

setStruckOkayButton(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

setStudyDate(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyDate(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStudyDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyDuration(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStudyHeaderBlocks(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyHeaderID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyHeaderRevisionNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyID(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStudyInstanceUID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UID

Sets Study Instance UID.

setStudyNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyPath(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

setStudyRootQuery() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Sets query to Study Root.

setStudyTableMinMax() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

Sets the study table's min and max column widths.

setStudyTaskID(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyTime(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setStudyTime(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setStudyTime(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setSubBrickNumber(int) - Method in class gov.nih.mipav.model.file.FileInfoAfni

setSubjectID(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the subject's ID.

setSubjectName(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the subject's name.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set whether or not subsampling occurs.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Accessor to set whether or not subsampling occurs.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets the subsample variable.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set whether or not subsampling occurs.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set whether or not subsampling occurs.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set whether or not subsampling occurs.

setSubsample(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set whether or not subsampling occurs.

setSubSample(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI

Accessor that sets the subsample size.

setSubsamplingRate(int) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Accessor that programatically sets the subsampling amount

setSubsystemSpecificDataOffset(long) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setSubtype(int) - Method in class gov.nih.mipav.model.structures.VOIBase

setSubType(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setSucceeded(boolean) - Method in class gov.nih.mipav.view.DICOMDisplayer

Sets the success flag.

SetSummaryFinalCost(CeresSolver.GradientProblemSolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

SetSummaryFinalCost(CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

setSuperiorCenter(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setSuperiorEdge(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the AC superior edge marker for orig to ACPC transformation in dataset ordering.

setSuperiorEdge(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Sets superior label based on the point.

setSuperiorPt(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the most superior point marker for +acpc to +tlrc transformation in dicom ordering.

setSuperiorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Sets superior label based on the point.

setSuperiorPt(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Sets superior label based on the point.

setSuppressionTechnique(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSuppressProgressBar(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

setSuppressProgressBar(boolean) - Method in class gov.nih.mipav.model.file.FileIO

setSuppressProgressBar(boolean) - Method in class gov.nih.mipav.model.file.FileSVS

setSuppressProgressBar(boolean) - Method in class gov.nih.mipav.model.file.FileTiff

setSuppressUnknownFileTypeDialog(boolean) - Method in class gov.nih.mipav.model.file.FileIO

If set to true, then unknown file type dialog is not shown and an error is returned instead.

setSurface(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Add the specified surface to the rendering.

setSurface(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Access function to set the triangle mesh that the geodesic curve is calculated on.

setSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Access function to set the triangle mesh that the geodesic curve is calculated on.

setSurfaceCoilIntensityCorrection(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSurfaceCoilsCorrectionType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSurfaceCoilType(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSurfaceFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

Set the surface file name.

setSurfaceMask(String, ColorRGB, BitSet) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Add a new surface mask.

setSurfaceMaskColor(String, ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Delete the surface mask, using the name of the mask as reference.

setSurfaceOpacityFlag - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Indicator for the opacity slider moves.

setSurfacePanel(JPanelSurface_WM) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Set the surface panel.

setSurfacePanel(JPanelSurface_WM) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

Sets the surface panel.

setSurfaceRender(RenderViewBase) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Accessor to set the render base object This reference used to update volumes according to the render view base instance type.

setSurfaces(Hashtable<String, FileInfoImageXML.SurfaceLink>) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the Surface hashtable for this image.

setSurfaceStates(Vector<SurfaceState>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

setSurfaceTexture(String, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turns on surface texture display for the given surface.

setSurfaceTexture(String, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on surface texture display for the given surface.

SetSurfaceTexture(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Sets the surface texture on/off.

SetSurfaceTexture(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Sets the surface texture on/off.

setSutterDG4Filter(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setSutterL10Filter1Array(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setSutterL10Filter2Array(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setSwapPF(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSwapXY(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setSwapYZ(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setSwapZX(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setSystemConfigHospitalName(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSystemGenerationID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setSystemID(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTable - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

Hashtable for holding sets of parameters.

setTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay

DOCUMENT ME!

setTable(Hashtable<?, ?>, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

setTable(Hashtable<?, ?>, boolean) - Method in class gov.nih.mipav.view.JPanelEditSetOrParam

DOCUMENT ME!

setTableHeader(JTableHeader) - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

setTableLocation(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTableModel(TableModel) - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

setTablePosition(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTabName(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveTab

Changes the name of the tab being saved.

setTag(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

setTagBuffer(byte[]) - Method in class gov.nih.mipav.model.file.FileDicomBase

DOCUMENT ME!

setTagDescription(Vector<String>) - Method in class gov.nih.mipav.model.file.FileInfoBase

setTagList(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

setTagName(Vector<String>) - Method in class gov.nih.mipav.model.file.FileInfoBase

setTagTable(FileDicomTagTable) - Method in class gov.nih.mipav.model.file.FileInfoDicom

setTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach

DOCUMENT ME!

setTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC

setTalairachCenter(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets the Talairach center point for +acpc to +tlrc transformation in dicom ordering.

setTalairachHeader(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

add the Talairach Transform to the image header

setTalairachHeader(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

setTalairachHeader(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

add the Talairach Transform to the image header

setTalairachPositionLabels(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the labels that refer to Talairach position within the image.

setTalairachTransformInfo(TalairachTransformInfo) - Method in class gov.nih.mipav.model.structures.ModelImage

Accessor that sets the talairach transform information.

setTarget(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current target of the light.

setTarget(TransformGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Sets the TransformGroup on which this behavior acts.

setTarget(TransformGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Sets the TransformGroup on which this behavior acts.

setTarget(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current target of the light.

setTargetDirectory(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs

Changes the target directory where the VOIs were saved, which should be recorded in the script.

setTargetDirectory(String) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities

Changes the target directory where the VOI intensities were saved, which should be recorded in the script.

setTau(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

setTau(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setTaut(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

Accessor that sets Taut.

setTAxisOffsets(float[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets time axis offsets.

setTE(float) - Method in class gov.nih.mipav.model.file.FileInfoCOR

Accessor to set the TE.

setTE(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTE(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setTE2(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTemperature(Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setTESliceSpoilerGradientsAmplitude(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setTESliceSpoilerGradientsDuration(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setTESliceSpoilerGradientsLimit(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

SetTestFrameRate(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

SetTestFrameRate(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

setTestImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Accessor to set the reference image.

setTestImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Accessor to set the reference image.

setText(String) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the displayed text.

setTextAcquisitionMatrixFreq(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionMatrixFreqO(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionMatrixFreqS(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionMatrixPhase(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionMatrixPhaseAxis(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionTimeMM(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAcquisitionTimeSS(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAngle(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAngleFlag1(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAngleFlag2(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAngleFlag3(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextAnnotation(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the text to the desired color.

setTextDateDD(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextDateMM(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextDateYYYY(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextDOBDD(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextDOBMM(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextDOBYYYY(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextEchoNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextEchoTime(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Enable the the fine or coarse labels and text fields with given flag value.

setTextEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

DOCUMENT ME!

setTextField(String, Container, int, int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

Makes a text field and adds it to the panel.

setTextField(String, GridBagLayout, GridBagConstraints, JPanel) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

Makes a text field and adds it to the panel.

setTextFlipAngle(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextFont(Font) - Method in class gov.nih.mipav.model.structures.VOIText

Sets Font.

setTextFOVH(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextFOVV(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextImageNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextImageNumber2(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextModelName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextOrganization(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientAge(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientAgeUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientID(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientName(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientPosition(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextPatientSex(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextRepetitionTime(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextScanNumberA(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextScanNumberB(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextScanStartTimeHH(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextScanStartTimeMM(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextScanStartTimeSS(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextSequence(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextSlicePosition(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextSliceThickness(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextStation(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextString(String) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Sets the string of this text.

setTextStudyImageNumber3(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextStudyNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextStudyNumber2(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextTablePosition(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextTimeHH(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTextTimeMM(String) - Method in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

setTexture(Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

setTexture(Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Sets the histogram Texture map for the widget shader effect.

setTexture(Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

setTexture(Texture) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

setTextureImage(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setTextureImageDataA(byte[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the texture data byte[] for ModelImage A

setTextureImageDataB(byte[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the texture data byte[] for ModelImage B

setTextureImageOn(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setTextureLUTOn(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setTextureOn(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setTextWidth(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIText

setTheta(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setTheta(float) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

setTheta(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Accessor that sets the rotation angle in degrees.

setTheta1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the theta1 value

setTheta2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Accessor that sets the theta2 value

setThickness(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

setThickness(double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

setThickness(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setThickness(int) - Method in class gov.nih.mipav.model.structures.VOI

Sets the thickness of the VOI

setThickness(DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

setThickness(DoubleSupplier, DoubleSupplier) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

setThreadStopped(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets the thread stopped to flag indicating if algorithm has stopped.

setThreadStopped(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

setThreeByteInteger(boolean) - Method in class gov.nih.mipav.model.file.FileRaw

setThreeByteInteger(boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

setThres1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Accessor that sets the first threshold.

setThres1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the first threshold.

setThres2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Accessor that sets the second threshold.

setThres2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Accessor that sets the second threshold.

setThresh(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

setthreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

setThreshold(double) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Accessor that sets the threshold.

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Accessor that sets the threshold.

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Accessor that sets the threshold.

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set threshold.

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets the threshold for threshold average.

setThreshold(float) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets the threshold.

setThreshold(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

setThreshold(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Accessor that sets the threshold.

setThreshold(int) - Method in class gov.nih.mipav.model.algorithms.AgastDetector5_8

setThreshold(int) - Method in class gov.nih.mipav.model.algorithms.OastDetector9_16

setthreshold1(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

setThreshold1(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setthreshold2(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

setThreshold2(float) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setthreshold3(double) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

setThresholdAverage(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Sets whether threshold averaging is performed - Only include those components greater than threshold.

setThresholdB(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Sets the blue threshold.

setThresholdB(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Sets the blue threshold.

setThresholdColors(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.PatientSlice

Sets the booleans for using thresholds in showUsingOrientation.

setThresholdColors(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the booleans for using thresholds in setColorPaintBuffers.

setThresholdFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the threshold flag.

setThresholdG(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Sets the green threshold.

setThresholdG(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Sets the green threshold.

setThresholdImage(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

If useThreshold true only copy when both the source pixel and its local neighborhoold are are less than minThreshold.

setThresholdLevel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets the thresholdLevel variable.

setThresholdLevel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the thresholdLevel variable.

setThresholdR(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Sets the red threshold (float[2]... 1st is lower, 2nd is upper)

setThresholdR(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Sets the red threshold (float[2]... 1st is lower, 2nd is upper)

setThresholds(float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2

The lower and upper thresholds must be set before calling beginEvolution.

setThresholds(float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3

The lower and upper thresholds must be set before calling beginEvolution.

setThresholds(float, float) - Method in class gov.nih.mipav.view.PatientSlice

Sets the thresholds.

setThresholds(float, float) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the thresholds.

setThresholdSelected(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Accessor that sets the thresholdSelected variable.

setThresholdSelected(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Accessor that sets the thresholdSelected variable.

setThresholdStatistics() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual

setThresholdStatistics() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB

setThresholdType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Accessor that sets whether soft or hard thresholding is used.

setThresholdValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Accessor that sets the minThreshold value.

setThumbnail(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setThumbnail(URI) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

setThumbnailData(int, int, int[]) - Method in class gov.nih.mipav.model.file.FileImageXML

Sets the thumbnail data (array of shorts).

setTI(float) - Method in class gov.nih.mipav.model.file.FileInfoCOR

Accessor to set the TI.

setTI(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTI(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setTiffMarker(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler

setTiffMarker(int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

Receives the 2-byte marker found in the TIFF header.

setTIFFOrientation(boolean) - Method in class gov.nih.mipav.model.file.FileIO

setTIFFOrientation(boolean) - Method in class gov.nih.mipav.model.file.FileSVS

setTIFFOrientation(boolean) - Method in class gov.nih.mipav.model.file.FileTiff

setTiltAngle(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

setTiltAngles(float[]) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setTime(int) - Method in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

setTime(int, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseFastMarch

Set the time of visitation for an image element.

setTime(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setTime(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the time for the parameter.

setTimeAcquired(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setTimeDifferenceX(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setTimeDifferenceY(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setTimeDifferenceZ(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

setTimeDim(int) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setTimeFrames(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTimeInterval(double) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setTimeOrigin(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets timeOrigin.

setTimeoutBetweenProjectionTransfers(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set timeoutBetweenProjectionTransfers.

setTimeProcessed(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setTimeSl(int) - Method in class gov.nih.mipav.view.ViewControlsImage

Directs the image to display a particular time slice.

setTimeSlice(int) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the time slice to record (4D TIFF).

setTimeSlice(int) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets the time slice in all frames displaying this image.

setTimeSlice(int) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set time slice

setTimeSlice(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

setTimeSlice(int) - Method in class gov.nih.mipav.view.JFrameHistogram

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

setTimeSlice.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

setTimeSlice.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

ViewImageUpdateInterface, unused here.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of RenderViewBase.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets the time slice to be displayed and changes the image planes displayed.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets the time slice to be displayed and changes the image planes displayed.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the time slice if the image has 4 dimensions and updates the image and title.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Required by the parent super class, do nothing.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets the time slice to be displayed and changes the image planes displayed.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Does nothing in this class.

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set time slice

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D

setTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setTimeSlice(int) - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

setTimeSlice.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets the time slice of the image.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Does nothing in this class.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Does nothing in this class.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the slice to be displayed and updates title frame.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the time slice if the image has 4 dimensions and updates the image and title.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the slice to be displayed and updates title frame.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the slice to be displayed and updates title frame.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Deprecated.
DOCUMENT ME!

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Sets the slice to be displayed and updates title frame.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Not used.

setTimeSlice(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the slice to be displayed and updates title frame.

setTimeSlice(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the slice to be displayed and updates title frame.

setTimeSlice(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the slice to be displayed and updates title frame.

setTimeSlice(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the slice to be displayed and updates title frame.

setTimeSlice(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the slice to be displayed and updates title frame.

SetTimeSlice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Sets the time slices for 4D data.

setTimeStamp(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setTimeStamp(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setTimeStamps(double[]) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setTimeStep(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter

Set the time step for the PDE solver.

setTimeStep(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets timeStep.

setTimeStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

setTimeWindowImages(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTimeWindowLowerLimit(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTimeWindows(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTimeWindowUpperLimit(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTimeWritten(String) - Method in class gov.nih.mipav.model.file.FileInfoFits

setTitle() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

set title

setTitle() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

setTitle() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Sets the title of the frame with the image name of slice location.

setTitle() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Set the title of the frame with the image name of slice location.

setTitle() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

set title

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Set the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Set the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameBase

Sets the Title bar of the frame.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Set the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Set the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

setTitle.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

setTitle.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the title of the frame with the image name and the slice location.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the title of the frame with the image name of slice location.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the title bar for the tri-image frame.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the title bar for the tri-image frame.

setTitle() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Sets the title of the frame with the image name of slice location.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

sets the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

sets the title of the frame with the image name and magnification.

setTitle() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the title bar for the tri-image frame.

setTitle(String) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata

setTitle(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setTitle(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Sets title.

setTitle(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setTitle(String) - Method in class gov.nih.mipav.view.JPanelProgressBar

DOCUMENT ME!

setTitle(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface

DOCUMENT ME!

setTitle(String) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Sets the title to this string.

setTitle(String) - Method in class gov.nih.mipav.view.ViewJProgressBar

Sets the title of the frame of the progress bar.

setTitle(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Gets the application title from the preference file and prepends to the string passed into the method and displays the resultant string in the title of the main frame.

setTitle(String, int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Set the investigator's title using an index.

setTitleStr(String) - Method in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

setTlrcRes(float[]) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets resolution in tlrc space

setTMargins(int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins

Adds or removes margins in the 4th dimensions.

setTNormal(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

setToCurrent() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

Sets the variables to the current system

setToggleButtonSelected(String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Sets the correct Toggle button to be selected (based on action command).

setTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

setTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setTol(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setToOrigin(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

setTop(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Accessor that sets the top side value.

setTop(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Accessor that sets the top side value.

SetTop(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

setTopPad(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set if padded with extra row on top.

setTopPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setTopPad(int) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setTopX(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the top x bounding box boundaries in Talairach conversion.

setTopY(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the top y bounding box boundaries in Talairach conversion.

setTopZ(int[]) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets array of the top z bounding box boundaries in Talairach conversion.

setTotalCounts(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTotalFrames(int) - Method in class gov.nih.mipav.model.file.FileInfoAvi

DOCUMENT ME!

setTotalImageNumber(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setTotalNumberOfDiffusionExperiments(int) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setTotalPixels(int) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Sets total number of pixels of histogram.

setTotalPostTriggerDelayTime(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTotalStatistic(String, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

Stores the total statistics for all elements of the VOIs that are included in this properties object.

setTotalVolume(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation

Set the total volume of all the burns.

setTR(float) - Method in class gov.nih.mipav.model.file.FileInfoCOR

Accessor to set the TR.

setTR(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTR(float) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setTractFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

settrait(LSCM.Trait) - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

settrait(LSCM.Trait) - Method in class gov.nih.mipav.model.algorithms.LSCM.Face

settrait(LSCM.Trait) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

settrait(LSCM.Trait) - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

setTransferFunction(TransferFunction) - Method in class gov.nih.mipav.model.structures.ModelLUT

Sets the LUTs transfer function.

setTransferFunctionA(TransferFunction) - Method in class gov.nih.mipav.view.JFrameHistogram

Set the transfer function for imageA.

setTransferFunctionB(TransferFunction) - Method in class gov.nih.mipav.view.JFrameHistogram

Set the transfer function for imageA.

setTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept

Sets the transfer syntax for this object.

setTransform(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets 2D transformation matrix.

setTransform(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets 2D transformation matrix.

setTransform(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the 3D transformation matrix [4x4].

setTransform(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the 3D transformation matrix [4x4].

setTransform(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the 3D transformation matrix [4x4].

setTransform(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the 3D transformation matrix [4x4].

setTransform(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

setTransform(TransMatrixd) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

setTransform(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeTexture

Apply the specified transform to the axis aligned texture.

SetTransform(Matrix4d) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

SetTransform(Matrix4f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

setTransformBtoA(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

Set transform from point set A to point set B.

setTransformBtoA(TransMatrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

Set transform from point set A to point set B.

setTransformDir(int) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets the transform direction.

setTransformFileName(String) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setTransformGroup(TransformGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

Swap a new transformGroup replacing the old one.

setTransformGroups(TransformGroup, TransformGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

setTransformID(int) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the transform ID for the matrix.

setTransformID(int) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the transform ID for the matrix.

setTransformStatusBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

setTransformType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the type of Talairach transformation.

setTransformVOIs(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set whether or not VOIs should be transformed.

setTranslate(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets translation parts of 2D matrix.

setTranslate(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets translation parts of 2D matrix.

setTranslate(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the translation parts of 3D matrix (4D Homogenous).

setTranslate(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the translation parts of 3D matrix (4D Homogenous).

SetTranslate(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Copy translation vector.

SetTranslate(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

SetTranslateVolumeCoords(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

SetTranslateVolumeCoords(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

setTranslation(float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

setTranslation(Vector3f) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets T03, T13 and T23 in the transformation matrix.

setTranslationCutoffValue(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setTranslationScaleFactor(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

the translationScaleFactor is used to change how fast the camera moves around the object ranging from 1, the fastest, to 10, the slowest

setTransmitAttenuatorSetting(short) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTransmitCoilName(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setTransmittedLightHalogenLampMode(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setTransmittedLightHalogenLampVoltage(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setTransmittedLightShutter(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setTransparency(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Sets the mesh transparency.

setTransparency(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Turns Transparency on/off for the selected surfaces.

setTransparency(SurfaceAttributes[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Turns Transparency on/off for the selected surfaces.

setTransparency(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Set the transparency for the given surface.

setTraverseButton() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the traverse button to selected.

setTraverseButton() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the traverse button to selected.

setTraverseButton() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the traverse button to selected.

setTree(String, int, int, int, float, float, Point3D, float[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

setTreeA(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

there is no programmatic way to determine which arrow is pointing where.

setTreeB(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

there is no programmatic way to determine which arrow is pointing where.

setTriggerTime(float[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setTS(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setTSlider(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox

method to set the time (4th dimension) slider if it exists.

setTSlider(int) - Method in class gov.nih.mipav.view.ViewControlsImage

Places the pointer on the (time) slider bar to a location corresponding to the given slice value (within the set).

setTSpace(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets t space (used for MINC images).

setTStart(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets t start (used for MINC images).

setTStart(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setTStop(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setTt(double) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

settTalVoxLabelText(String) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

setTurboFactor(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setType(int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the type of data.

setType(ModelStorageBase.DataType) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the type of data.

setType(String) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

set the surface type keyword:

setType(String) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML

set the surface type keyword:

setType(String) - Method in class gov.nih.mipav.view.ColorWheel

setTypeAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current light type to ambient.

setTypeDirectional() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current light type to directional.

setTypePoint() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current light type to point.

setTypeSpot() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current light type to spot.

setUByte(int[], short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. nD set data fuction where bounds checking is NOT performed.

setUByte(int, int, int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 4D fast version of set that does NOT perform bounds checking.

setUByte(int, int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 3D fast version of set that does NOT perform bounds checking.

setUByte(int, int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 2D fast version of set that does NOT perform bounds checking.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in unsigned byte format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in unsigned byte format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the short data in double format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the data in float format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the unsigned byte value in unsigned short format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the unsigned byte value in unsigned short format.

setUByte(int, short) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value.

setUCenterOffset(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set UCenterOffset.

setUdefDescription(String) - Static method in class gov.nih.mipav.view.ViewImageFileFilter

This sets the udef description becasue as the user edits the file extensions, the description changes

setUI(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

Sets UI variables for either saving between processing steps or later reuse.

setUID(int) - Method in class gov.nih.mipav.model.structures.VOI

Sets the unique ID (for saving/retreiving treatment details).

setUID(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase

Sets the UID for a simple PDU type.

setUInt(int[], long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. nD set data fuction where bounds checking is NOT performed.

setUInt(int, int, int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 4D fast version of set that does NOT perform bounds checking.

setUInt(int, int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 3D fast version of set that does NOT perform bounds checking.

setUInt(int, int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 2D fast version of set that does NOT perform bounds checking.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in boolean format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the short (unsigned) value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the int value in unsigned short format.

setUInt(int, long) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. version of set that does NOT perform bounds checking.

setulb(int, int, double[], double[], double[], int[], double[], double[], double, double, String[], int, String[], boolean[], int[], double[], RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B

setUnequalDim(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Accessor that sets the boolean telling if unequal dimesnions are allowed in a complex image.

setUnequalDim(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets whether or not the picture dimension can be unequal.

setUnitDirections(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

setUnits() - Method in class gov.nih.mipav.model.file.FileInfoMinc

Sets the units of the dimensions, as in millimeters, inches, etc.

setUnits(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

setUnits(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the units.

setUnitsInLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Sets the units in the default axis labels.

setUnitsOfMeasure(int[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets (copies) units of measure for image.

setUnitsOfMeasure(int, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets units of measure for image, on a per dimension basis.

setUnitsOfMeasure(FileInfoBase.Unit[]) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets (copies) units of measure for image.

setUnitsOfMeasure(FileInfoBase.Unit, int) - Method in class gov.nih.mipav.model.file.FileInfoBase

Sets units of measure for image, on a per dimension basis.

setUnsharp(float[]) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the unsharp array.

setUnsharp(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the unsharp array values.

setUnsharpWeight(double) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Accessor that sets the unsharp weight value.

setUnused1(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets unused 1.

setUnused2(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets unused 2.

setUnused3(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets unused 3.

setUnusedColor(Color) - Method in class gov.nih.mipav.view.BarMeter

applies the given color to bars which are not lit and are above the set amplitude.

setup() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation

setup() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

setup() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

setup() - Method in class gov.nih.mipav.model.algorithms.SVM

setup() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

setup() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

Sets up the GUI components of the dialog.

setup() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Sets up variables for recorder.

setup() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Sets up variables for recorder.

setup(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Perform all initialization prior to executing.

setup(Vector2f[], Vector2f[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(Vector2f[], Vector2f[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(Vector3f[], Vector3f[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(Vector3f[], Vector3f[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

Checks if pointSetA is same dimension as pointSetB sets pointSetA and pointSetB.

setup(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Perform all initialization prior to executing.

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDescriptorTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

setUp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PanasonicMakernoteDescriptorTest

Setup(CAAMShape, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Sets up the class with the reference shape and information about how to determine the extent of the shape.

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureEllipse

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.DoglegStrategyFixtureValley

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ProductParameterizationTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

SetUp() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

setup2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline.ColorInterpolation

setup2DBSpline(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

Allocates memory and constructs arrays needed for BSpline.

setup2DBSplineC(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

Allocates memory and constructs arrays needed for BSpline.

setup2DCubicLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

Setup 2D cubicLagrangian.

setup2DCubicLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

Setup 2D cubicLagrangian for color.

setup2DHepticLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

Setup 2D hepticLagrangian.

setup2DHepticLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

Setup 2D hepticLagrangian for color.

setup2DQuinticLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

Setup 2D quinticLagrangian.

setup2DQuinticLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

Setup 2D quinticLagrangian for color.

setup2DWSinc(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 2D wSinc.

setup2DWSinc(double[], int[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 2D wSinc.

setup2DWSincC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 2D wSinc for coor image.

setup3DBSpline(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

setup3DBSpline - setup 3D Bspline for black and white.

setup3DBSplineC(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

Allocates memory and constructs arrays needed for BSpline.

setup3DCubicLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

Setup 3D cubic Lagrangian.

setup3DCubicLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

Setup 3D cubic Lagrangian for color.

setup3DHepticLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

Setup 3D heptic Lagrangian.

setup3DHepticLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

Setup 3D heptic Lagrangian for color.

setup3DQuinticLagrangian(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

Setup 3D quintic Lagrangian.

setup3DQuinticLagrangianC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

Setup 3D quintic Lagrangian for color.

setup3DWSinc(double[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 3D wSinc.

setup3DWSinc(double[], int[], int[], boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 3D wSinc.

setup3DWSincC(double[], int[], float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Setup 3D wSinc for color.

setupAndLayout() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Sets up pretty much everything.

setupBlock() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupBranchChoices(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Create the array of branch choices and set the mode which forces the user to select from among the branch choices.

setupBranchChoices(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Create the array of branch choices and set the mode which forces the user to select from among the branch choices.

setupBranchChoices(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

Create the array of branch choices and set the mode which forces the user to select from among the branch choices.

setupBrightness() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

The SUSAN brightness function is implemented as a LUT (Look-Up-Table) for speed.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Sets who the behavior calls back to.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Sets who the behavior calls back to.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(FlyPathBehavior.Callback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Identify the instance which implements the Callback interface.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(MouseBehaviorCallback) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior

The transformChanged method in the callback class will be called every time the transform is updated.

setupCallback(FlyPathBehavior_WM.Callback) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Identify the instance which implements the Callback interface.

setupCallback(NavigationBehavior.Callback) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

Identify the instance which implements the Callback interface.

setupCameraStorage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Setup the light box view.

setupComboBoxLayout() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets up the gridbag layout of the combo boxes.

SetupCommonMinimizerOptions(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

setupCoordSysRenderer() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Helper method to setup the CoordSysRenderer

SetupCtrl(METIS.moptype_et, int[], int, int, float[], float[]) - Method in class gov.nih.mipav.model.structures.jama.METIS

setupData() - Method in class gov.nih.mipav.model.algorithms.FitLine

Sets up data to test fitting of exponential.

setupData() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh

Sets up data to test fitting of Rayleigh distribution.

setUpdate(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

setUpdateOrigin(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the update origin flag.

setUpdateOriginFlag(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Sets the origin flag used indicated that origin should be changed based using the supplied transformation matrix.

SetupEvaluator(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchPreprocessor

SetupEvaluator(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor

setupEye() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Set up the center point of the red line boxframe.

setupEye() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set up the center point of the red line boxframe.

setupEye() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Set up the center point of the red line boxframe.

SetUpFromId(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SetUpFromProblemId(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest

SetupGraph_label(METIS.graph_t) - Method in class gov.nih.mipav.model.structures.jama.METIS

SetupGraph_tvwgt(METIS.graph_t) - Method in class gov.nih.mipav.model.structures.jama.METIS

SetupHelper(CeresSolver.LinearLeastSquaresProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SetupInnerIterationMinimizer(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor

setupInterface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

Sets up the user interface.

setupInterface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

Sets up the user interface.

setupInterface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Sets up the user interface.

setupKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

setupKFB(libdt.DytexMix, int) - Method in class gov.nih.mipav.model.algorithms.libdt

setupLabelLayout() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets up the gridBagLayout of the textField label.

setupLatLon(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Called when the mesh is created, or when the number of latitude or longitude lines is changed by the user.

setupLatLon(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Called when the mesh is created, or when the number of latitude or longitude lines is changed by the user.

setupLight() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Sets up a direction lightsource for the scene.

setupLightBox(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Setup the light box view.

setupLights() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Create and initialize the eight lights in the scene graph.

setupLights(TransformGroup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Create and initialize the nine lights in the scene graph.

SetupLinearSolver(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor

setupMask() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setupMaskImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setupMaterials(Material) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

Reads the current color values from the Material and sets the values for the two spheres displayed in the interface.

setupMaterials(MaterialState) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Reads the current color values from the Material and sets the values for the two spheres displayed in the interface.

SetupMinimizerOptions(CeresSolver.PreprocessedProblem) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor

setupMinMax() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Set the min max values for the opacity histogram.

setupMinMax() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Set the image min, max values.

setupNavigationScenegraph() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Setup the Navigation scene graph view for debugging purpose

setupNew(File) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

makes the submitted directory as given by the inputted File, or the text as given in the given given textField.

setupNoRandPartA() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupNoRandPartB() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupNoRandPartC() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

SetupOptions() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.SetupOptions

SetupOptions() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.SetupOptions

setupPath(FlyPathGraphCurve) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setUpperBound(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the upper bound from the script dialog.

SetUpperBound(int, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setUpperBoundB(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the upper blue bound from the script dialog.

setUpperBoundG(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the upper green bound from the script dialog.

setUpperBoundR(String) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Set the upper red bound from the script dialog.

setUpperExtents(int) - Method in class gov.nih.mipav.model.file.FileSpar

setUpperList(JList) - Method in class gov.nih.mipav.view.JPanelListController

Convience method to set list A.

setUpperTree(JTree) - Method in class gov.nih.mipav.view.JPanelTreeController

Convience method to set tree A.

SetUpProblem(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest

setupRandPartA() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupRandPartB() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupRandPartC() - Method in class gov.nih.mipav.model.file.CBZip2InputStream

setupRender(ModelImage, FlythruRender.SetupOptions) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Setup flythru renderer.

setupRender(ModelImage, FlyThroughRender.SetupOptions) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

Setup flythru renderer.

setupRenderControl(JPanelVirtualEndoscopySetup) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

DOCUMENT ME!

setupRenderControl(JPanelVirtualEndoscopySetup_WM) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

Set the JPanelVirtualEndoscopySetup user-interface.

setupRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setUpscale(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setupScene(float, GeneralLight[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

Sets up the rendered scenes.

setupScene(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Sets up the rendered scenes.

setupSendFileListing(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets ups the send file listing.

setupSendTab() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Update Send tab to reflect any changes in hosts.

setupTextFieldLayout() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sets up the gridbaglayout of the textField.

setupTPSpline2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline2D - computes the thin plate spline coefficients.

setupTPSpline2D(double[], double[], double[], double[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline2D computes the thin plate spline coefficients.

setupTPSpline2D(float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline2D computes the thin plate spline coefficients.

setupTPSpline3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline3D - computes the thin plate spline coefficients.

setupTPSpline3D(double[], double[], double[], double[], double[], double[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline3D computes the thin plate spline coefficients.

setupTPSpline3D(float[], float[], float[], float[], float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

setupTPSpline3D computes the thin plate spline coefficients.

setUpVector(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setURL(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setUse3D(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

setUseBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setUseBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setUseBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

setUseBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setUseBlue(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that setes if the blue channel is used.

setUsedColor(Color) - Method in class gov.nih.mipav.view.BarMeter

applies the given color to bars which are "lit" and are up to the set amplitude.

setUseDefaultRanges(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Accessor that sets the useDefaultRanges to the parameter.

setUsedFlag(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

setUsedSliceThickness(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setUseELSUNC(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set whether to use Powell's algorithm calling Brent's method or ELSUNC for search algorithm

setUseGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setUseGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setUseGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

setUseGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setUseGreen(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets if the green channel is used.

setUseIncorrectAcpcXDim(boolean) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Sets whether the TalairachTransform acpcDim x value should be set up (incorrectly) like it was in previous versions (for Pierpaoli's group).

setUseJTEM(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

setUseMarker(boolean) - Method in class gov.nih.mipav.model.structures.VOIText

Sets the arrow to be on or off

setUseMedian(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Accessor that sets the useMedian flag.

setUseMouseRotationCutoffs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setUseMouseTranslationCutoffs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

setUseMultipleReceivers(String) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setUseOCL(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).

setUseOCL(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).

setUseOCL(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).

setUseOCL(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).

setUseOCL(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).

setUser(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

setUser0(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser1(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

setUser2(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser3(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser4(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser5(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser6(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser7(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser8(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUser9(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setUserAddress(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

SetUserBit(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setUserCity(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserCompany(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserCompanyLogo(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserCountry(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserDefaultDir(String) - Static method in class gov.nih.mipav.view.ViewUserInterface

setUserDefinedExtensions() - Static method in class gov.nih.mipav.view.ViewImageFileFilter

This sets the user defined Exts String as well as the Arraay of exts from the Preferences

setUserDefinedFileTypes_textFieldPref(String) - Method in class gov.nih.mipav.model.file.FileIO

This method sets the userDefinedFileTypes_textField preference.

setUserDefinedFileTypesPref(String) - Method in class gov.nih.mipav.model.file.FileIO

This method sets the userDefinedFileTypes preference.

setUseRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

setUseRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

setUseRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

setUseRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

setUseRed(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Accessor that sets if the red channel is used.

setUserFax(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserID(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserInformation(DICOM_UserInformation) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Sets the user information.

setUserInstructions(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Sets the instruction label to the message.

setUserInterface(ViewUserInterface) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets user interface.

setUserLimits(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

If true, use userMin to userMax instead of image.getMin() to image.getMax() as histogram limits

setUserMax(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

setUserMin(float) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

setUserName(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setUserName(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserPhone(String) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setUserXGrid(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setUserYGrid(boolean) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setUseScannerAnatomical(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Sets the tranform to set orientation to AXIAL (this is a scanner anatomical transform).

setUseSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Accessor to set whether to use the separable convolver for edge detection.

setUseSphere(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Don't try estimating ellipse as initial surface use sphere estimate.

setUseSphere(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Sets whether or not to use only an estimate of sphere to nitialize the boundary evolution.

setUseThreshold(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set if threshold is used.

setUseVOI(boolean) - Method in interface gov.nih.mipav.view.PaintGrowListener

Sets whether to only grow within the currently selected VOI.

setUseVOI(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets whether a selected VOI is used to calculate the initial variance.

setUseVOIName(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Sets the Preference to use VOI Names instead of labels, then updates all frames to reflect this change with their VOIs.

setUShort(int[], int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. nD set data fuction where bounds checking is NOT performed.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferBase

Sets the data array at the specified index to the specified value.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferBoolean

Sets the value in byte format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferByte

Sets the value in byte format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferDouble

Sets the data in double format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferFloat

Sets the unsigned data in float format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferInt

Sets the value in int format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferLong

Sets the value in long format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferShort

Sets the value in short format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferUByte

Sets the value in byte format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferUInt

Sets the short (unsigned) value in unsigned short format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.BufferUShort

Sets the short (unsigned) value in unsigned short format.

setUShort(int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value.

setUShort(int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 2D fast version of set that does NOT perform bounds checking.

setUShort(int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 3D fast version of set that does NOT perform bounds checking.

setUShort(int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.ModelStorageBase

Sets the image voxel at the specified position to the specified value. 4D fast version of set that does NOT perform bounds checking.

setUtil(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

setV() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setV(int, Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setv_father(LSCM.Vertex, LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

setv_idx(LSCM.Vertex, int) - Method in class gov.nih.mipav.model.algorithms.LSCM

setV_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setv_touched(LSCM.Vertex, boolean) - Method in class gov.nih.mipav.model.algorithms.LSCM

setv_uv(LSCM.Vertex, LSCM.Point2) - Method in class gov.nih.mipav.model.algorithms.LSCM

setv_valence(LSCM.Vertex, int) - Method in class gov.nih.mipav.model.algorithms.LSCM

setVal(float, float[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

Sets the value in a 2D image buffer at location row, col.

setVal(float, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

Sets the value in a 3D image buffer at location row, col.

setValidBitsPerPixel(int) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setValidBitsPerPixel(String) - Method in class gov.nih.mipav.model.file.FileInfoCZI

setValidRange(double[]) - Method in class gov.nih.mipav.model.file.FileInfoMincHDF

Sets the valid range for the image data

setValue(boolean) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterBoolean

Changes the parameter's current value.

setValue(double) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterDouble

Changes the parameter's current value.

setValue(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap.Record

Set the numeric value for the heap record.

setValue(float) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterFloat

Changes the parameter's current value.

setValue(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the mask value or mask red value.

setValue(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Called to set the current progress bar indicator position.

setValue(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

Sets the value of the Img at the position currently referenced by this Pixel.

setValue(int) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterInt

Changes the parameter's current value.

setValue(int) - Method in class gov.nih.mipav.view.JPanelProgressBar

Used to set the present value of the progress bar.

setValue(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Called to set the current progress bar indicator position.

setValue(int) - Method in class gov.nih.mipav.view.ViewJSlider

setValue(int, boolean) - Method in class gov.nih.mipav.view.JPanelProgressBar

DOCUMENT ME!

setValue(int, int, float) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Set the value at the x, y position of the data array.

setValue(int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img

Sets value at the specified position.

setValue(long) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterLong

Changes the parameter's current value.

setValue(short) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterShort

Changes the parameter's current value.

setValue(short) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterUShort

Changes the parameter's current value.

setValue(FileDicomKey, FileDicomTag, Object, int) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the value of the DicomTag in the tagsList Hashtable with the same hexadecimal tag name.

setValue(FileDicomKey, Object) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the value of the DicomTag in the tagsList Hashtable with the same hexadecimal tag name.

setValue(FileDicomKey, Object, int) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the value of the DicomTag in the tagsList Hashtable with the same hexadecimal tag name.

setValue(Point3) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Test

setValue(Object) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the value and length attributes of the DicomTag.

setValue(Object) - Method in class gov.nih.mipav.model.file.FileMincVarElem

Adds value to values vector.

setValue(Object, int) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the value attribute of the DicomTag.

setValue(Object, int) - Method in class gov.nih.mipav.model.file.FileMincAttElem

Sets the attribute's value array to the value at the indicated index.

setValue(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the value for the parameter.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Changes this parameter's value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterBoolean

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterDouble

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterFloat

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterInt

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList

Sets the list of parameters based on a comma delimited String containing parameter values.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterLong

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterShort

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterString

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterUShort

Changes the parameter's current value.

setValue(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

setValue(String, Object) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the value of the DicomTag in the tagsList Hashtable with the same hexadecimal tag name.

setValue(String, Object, int) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Sets the value of the DicomTag in the tagsList Hashtable with the same hexadecimal tag name.

setValue(Vector<Parameter>) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList

Changes the parameter list elements.

setValue(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode

setValueAssigned(boolean) - Method in class gov.nih.mipav.model.scripting.parameters.Parameter

Sets whether a value has been set for this parameter.

setValueAt(Object, int, int) - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

setValueAt(Object, int, int) - Method in class gov.nih.mipav.view.ViewTableModel

Sets the value at the given row and column of the table.

setValueB(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the mask blue value.

setValueG(float) - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Accessor that sets the mask green value.

setValueImmed(int) - Method in class gov.nih.mipav.view.JPanelProgressBar

Used to set the present value of the progress bar.

setValueRepresentation(FileDicomTagInfo.VR) - Method in class gov.nih.mipav.model.file.FileDicomTag

Sets the value representation (vr) of this tag.

setValueRepresentation(FileDicomTagInfo.VR) - Method in class gov.nih.mipav.model.file.FileDicomTagInfo

Sets the value representation; used only for explicit vr.

setValues(boolean, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox

method to set the row, col, and row_dependent values.

setValues(AlgorithmRegBSpline.Options) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls

Set the state of the controls based on the specified values.

setValues(String[]) - Method in class gov.nih.mipav.view.dialogs.JDialogServer

Sets the current values in the text fields to the values in the array.

setValueTables(int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

setValueTables(int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

setValueType(String) - Method in class gov.nih.mipav.model.file.XMLParameter

Sets the value type for the parameter.

setVariableBandwidth(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVariableFlipAngleFlag(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation

makes sure the dialog is ready after (OKAY) is pressed.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

Sets the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

Sets the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount

Sets the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

set variables

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI

Set up the variables before calling the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Sets the variables needed for calling the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Sets the variables needed for calling the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Set the variable when the OK button is clicked.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

Check width and height for validity.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions

Check width and height for validity.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient

Checks the fields to see they are properly formed/entered

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Sets the variables appropriately from the GUI.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Gets the user-determined parameters for the algorithm from the user-interface components.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

Sets variables required to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Sets the variables needed for calling the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

Sets up the algorithm's parameters.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice

Sets the mode variable based on what was selected in the GUI.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Sets the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

sets the variables based on user-input.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Sets the variables based on the user's dialog input.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI

This method could ensure everything in your dialog box has been set correctly

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Sets up the variables needed for the algorithm from the GUI components.

setVariables() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

setVariables() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Sets up the variables needed for the algorithm from the GUI components.

setVariables() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogVolumeAnnotation

makes sure the dialog is ready after (OKAY) is pressed.

setVariables() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Use the GUI results to set up the variables needed to run the algorithm.

setVariables() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize

setVariablesDirection() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Use the GUI results to set up the variables needed to run the algorithm.

setVariablesForOAR35D() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

Sets the variables needed to call the registration algorithm based on the values entered in the dialog.

setVariableThresholds(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

If true varies thresholds with region growth.

setVariance(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets if the gray level coordinate matrix variance is calculated.

setVariance(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets if the gray level coordinate matrix variance is calculated.

SetVarying() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

setVascularImagingFlags(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVasMode(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVCenterOffset(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set VCenterOffset.

setVD1(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setVD2(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setVencScalingFactor(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVerbose(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setVerbose(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setVerbose(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setVerbose(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setVerified(float) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supply the value to verified.

setVerified(float) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supply the value to verified.

setVerified(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supply the value to verified.

setVersion(int) - Method in class gov.nih.mipav.model.file.FileInfoMATLAB

setVersion(int) - Method in class gov.nih.mipav.model.file.FileInfoMGH

setVersion(int) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

setVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setVersion(String) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setVersionNumber(float) - Method in class gov.nih.mipav.model.file.FileInfoNRRD

Accessor setting versionNumber, version of NRRD file format being used.

setvertex(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

setVertex(GenericPolygonClipper.gpc_vertex[]) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex_list

setVertex(Vector<Point3>) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

SetVertex(int, double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes

SetVertex(int, double[], double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares

SetVertex(int, float[], float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes

setVertexData(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

setVertexData(int, double) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

setVertexData(int, double[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

setVertexData(int, int, double) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

setVertexDiffuse(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Set the vertex diffuse color.

setVertexDiffuseColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

Set the vertex material diffuse color.

setVertexRoundingEnabled(boolean) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

En/Disables vertex rounding for this Lines object.

setVertexSpecular(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Set the vertex specular color.

setVertexSpecularColor(Color) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

Set the vertex material specular color.

setVerticalAnatomicalReference(String) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVerticalLandmark(float) - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

setVerticies(Point3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh

Accessor to reset the verticies associated with this clod.

setVerticies(Point3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Replace the verticies with a new set.

setVFp(int, Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setView(double[]) - Method in class gov.nih.mipav.view.renderer.MouseEventVector

Set the current vector view - transform3D object.

setView(Rectangle2D) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.AdaptableView

Sets the view rectangle that is the range of coordinates to be projected onto the view port.

setView(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer

Sets the view matrix for each of the renderers

setView(Rectangle2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer

setView(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Set the current vector view - transform3D object.

setView(Point3d, Vector3d) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior

Set the camera to the specified be located at the specified view point and looking in the specified direction.

setView(Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setView(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM

Set the camera to the specified be located at the specified view point and looking in the specified direction.

setView(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

????????????????????????????????????????????????????

setViewDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the current base viewing direction at the current point along the path.

setViewDirection(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the current base viewing direction at the current point along the path.

setViewOrientation(Matrix3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the display to show the current viewing orientation which is always relative to the base viewing direction.

setViewOrientation(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the display to show the current viewing orientation which is always relative to the base viewing direction.

setViewPoint(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

setViews(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Sets the views variable.

setViews(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Sets the views variable.

setViews(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets the views variable.

setViewTextureAligned(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Switch between the volume texture mode and the regular volume texture mode.

setVisible() - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Makes the dialog visible in center of screen.

setVisible(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Makes the dialog visible in center of screen.

setVisible(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline.Controls

Makes the controls visible or invisible.

setVisible(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

setVisible(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Overides the super.setVisible(boolean b) (which also locates a panel in the center of the screen), to use the super.setVisibleStandard(boolean b) which merely displays the Swing object onscreen.

setVisible(boolean) - Method in class gov.nih.mipav.view.JPanelProgressBar

DOCUMENT ME!

setVisible(boolean) - Method in interface gov.nih.mipav.view.ProgressBarInterface

DOCUMENT ME!

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Makes the dialog visible next to the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Makes the dialog visible next to the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Makes the dialog visible next to the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Makes the dialog visible next to the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Makes the dialog visible next to the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase

Makes the dialog visible in center of screen.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Sets the currently visible flag.

setVisible(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Makes the dialog visible in center of screen.

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMemory

Shows the frame with the memory.

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages

Shows the frame with the memory.

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement

Sets the dialog visible in the same location as the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement

Sets the dialog visible in the same location as the parent frame.

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewJProgressBar

DOCUMENT ME!

setVisible(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Change whether the GUI should be visible.

setVisibleMenuBar(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

setVisibleNoLocChange(boolean) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Makes the dialog visible without setting position.

setVisibleStandard(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Makes the dialog visible by calling super method.

setVisibleStandard(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase

Makes the dialog visible by calling super method.

setVOI(VOI) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Accessor that sets the VOI ViewJFrameGraph was made from.

setVOI(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Sets and updates the VOIBase displayed by this VolumeVOI.

setVOI(VOIBase, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Sets and updates the VOIBase displayed by this VolumeVOI.

setVOI_IDs(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setVOI_IDs(int, int) - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Deprecated.

setVOIActive(VOI) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Internal method for setting all relevant parts of the GUI and the MIPAV interface to reflect the active VOI.

setVOIColor(int) - Method in class gov.nih.mipav.view.ViewControlsImage

DOCUMENT ME!

setVOIColor(int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.VOIColorButton

setVOIColor(Color) - Method in class gov.nih.mipav.view.ViewControlsImage

DOCUMENT ME!

setVOIColor(Color) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.VOIColorButton

Sets the buttons background and foreground to a specified color.

setVoiFileLocation(String) - Method in class gov.nih.mipav.view.dialogs.ScriptVOI

setVOIFlag(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Accessor that sets the voi flag.

setVOIGroup(ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

setVOILatticeManager(VOILatticeManagerInterface) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setVOIList(ViewVOIVector) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

sets the selected VOIset and the data set data storage sizes based on the number of curves in the Vector.

setVOIList(ListModel) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

DOCUMENT ME!

setVOIManager(VOIManager) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setVOIManager(VOIManagerInterface) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Sets the VOIManagerInterface

setVoiName(String) - Method in class gov.nih.mipav.view.dialogs.ScriptVOI

setVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage

Sets VOI vector for with new VOIs.

setVOIs(Hashtable<String, FileInfoImageXML.VOILink>) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the VOI hashtable for this image.

setVoisOnly(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the VOIs only flag.

setVoisOnly(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the VOIs only flag.

setVoisOnly(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the VOIs only flag.

setVoisOnly(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the VOIs only flag.

setVoisOnly(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the VOIs only flag.

setVOIState(VOISaveState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setVOIStatistic(String, Object) - Method in class gov.nih.mipav.model.structures.VOIStatisticalProperties

Stores the statistic for the whole VOI.

setVOITools(JMenu, ViewMenuBuilder) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

setVol1Channel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

set vol1Channel

setVol2Channel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

set vol2Channel

setVol3Channel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

set vol3Channel

setVolParameters(HashMap<String, String>) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setVolsAdded(int) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Supplies a value to the vols_added valiable.

setVolsAdded(int) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Supplies a value to the vols_added valiable.

setVolsAdded(int) - Method in class gov.nih.mipav.model.file.FileInfoSPM

supplies a value to the vols_added valiable.

setVolume(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Sets the value of the surface volume.

setVolumeBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Sets the blend factor for displaying the ray-cast volume with other objects in the scene.

setVolumeBlend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Sets the blend factor for displaying the ray-cast volume with other objects in the scene.

setVolumeBounds(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the CubeBounds data member volumeBounds to the crop volume defined by the lower and upper volume points.

setVolumeCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeCenter(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeCenter(Point3D) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeCenter(Point3D) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeCenter(Point3D) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the x coordinate of the point to be the center of the transformed image.

setVolumeClip(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

setVolumeClipRadius(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

setVolumeColor(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Set the flag to using volume color or not

setVolumeColor(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

setVolumeDisplayMode(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Accessor that sets the volumeDisplayMode flag.

setVolumeDisplayMode(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Accessor that sets the volumeDisplayMode flag.

setVolumeDisplayRange(float) - Method in class gov.nih.mipav.model.structures.VOIBase

SetVolumeIndex(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

setVolumeLength(int) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Accessor that sets the length (number of slices) for the 3rd dimension.

setVolumeMask(BitSet) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Initial the volume mask from burnBase.

setVolumeMatrix(float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

setVolumeOriginX(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeOriginX.

setVolumeOriginY(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeOriginY.

setVolumeOriginZ(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeOriginZ.

setVolumeSamples(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

setVolumeSamples(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

setVolumeSamplesMouseDragged(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the sampling rate when the mouse is Dragged.

setVolumeSamplesMouseReleased(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Set the sampling rate when the mouse is released.

setVolumeSculptor(VolumeRenderer) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Initialize the raycast based volume render with the sculptor.

setVolumeSizeX(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeSizeX.

setVolumeSizeY(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeSizeY.

setVolumeSizeZ(int) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set volumeSizeZ.

setVolumeType(int) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

Accessor which lets you change the type of volume to be inserted.

setVolView(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Set the volume view mode to true from the ViewJFrameVolumeView During mouse recorder displaying, the flag control the updating of the opacity histogram.

setVoxelOrder(String) - Method in class gov.nih.mipav.model.file.FileInfoTrackVis

setVoxelSize() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

setVoxelSizeX(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set voxelSizeX.

setVoxelSizeY(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set voxelSizeY.

setVoxelSizeZ(float) - Method in class gov.nih.mipav.model.file.FileInfoMicroCat

Accessor to set voxelSizeZ.

setVoxOffset(float) - Method in class gov.nih.mipav.model.file.FileInfoSPM

sets vox offset value.

setVoxOffset(long) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

sets vox offset value.

setVoxUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Allows no more than 4 characters for the string describing the vox units.

setVoxUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Allows no more than 4 characters for the string describing the vox units.

setVoxUnits(String) - Method in class gov.nih.mipav.model.file.FileInfoSPM

allows no more than 4 characters for the string describing the vox units.

setVr_type(FileInfoDicom.VRtype) - Method in class gov.nih.mipav.model.file.FileDicomTagTable

setVr_type(FileInfoDicom.VRtype) - Method in class gov.nih.mipav.model.file.FileInfoDicom

setw(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge

setW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

setW(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Accessor to set the width value of the painted rectangle.

SetW() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

setWallPositions(ArrayList<ArrayList<Point>>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

setWarps(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setWatershedID(short) - Method in class gov.nih.mipav.model.structures.VOI

Accessor that sets the ID to the parameter.

setWave1(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setWave2(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setWave3(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setWave4(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setWave5(short) - Method in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

setWavelengthArray(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setWavelengths(double[]) - Method in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

setWCSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Sets the world coordinate flag.

setWCSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Sets the world coordinate flag.

setWCSystem(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Sets the world coordinate flag.

setWCSystem(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase

Sets the world coordinate flag.

setWeight(double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection

setWeight(double) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Accessor that sets the weight.

setWeight(int) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Sets the subject's weight.

setWeightAsBest() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Connection

setWeightDiff(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Accessor that sets the weighting attached to the component of the potential due to the difference between two neighboring pixel values.

setWeighted(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Accessor to set the weighted images flag.

setWeighted(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Accessor to set the weighted images flag.

setWeighted(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Accessor to set the weighted images flag.

setWeighted(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Accessor to set the weighted images flag.

setWeighted(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Accessor to set the weighted images flag.

setWeighted_dx(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

setWeighted_dy(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

setWeightPrevious(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

DOCUMENT ME!

setWeights(double[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

nr_weight, weight_label, and weight are used to change the penalty for some classes (If the weight for a class is not changed, it is set to 1).

setWellAddress(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

DOCUMENT ME!

setWellExternRef(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

DOCUMENT ME!

setWellString(String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

DOCUMENT ME!

setWest(AlgorithmNetworkSnake.PixelGrid.PixelGridNode) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setWhere(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut

setWhich(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut

setWhich2(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry

setWhichCut(short) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry

setWhiteStart(double) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Accessor that sets the white start.

setWhiteValue0(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setWhiteValue1(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setWhiteValue2(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setWhiteValue3(double) - Method in class gov.nih.mipav.model.file.FileInfoZVI

setWidget(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the widget type for new widgets.

setWidgets(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Sets the list of Widgets.

setWidthDivisions(int) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Accessor that sets the width divisions.

setWidthText(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

setWindLevel(int, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Set the window level value from the eye tracker

setWindlevelUpdate(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Set the update win-level flag from the plane render mouse drag, release events.

setWindow(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

setWindow(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

setWindow(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Sets the window size for X, Y, or Z processing.

setWindowA(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setWindowB(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setWindowC(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

setWindowCenter(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setWindowCenter(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setWindowCenterWidthExplanation(String) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setWindowLevel(float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

setWindowSettings() - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Sets the necessary plug-in window setting to get it to close correctly and have the correct icon.

setWindowSettings() - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Sets the necessary plug-in window setting to get it to close correctly and have the correct icon.

setWindowSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Accessor that sets the window size.

setWindowSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

setWindowSize(int) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

Accessor that sets the window size.

setWindowSize(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Accessor that sets the window size.

setWindowWidth(double[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

setWindowWidth(int[]) - Method in class gov.nih.mipav.model.file.FileInfoPARREC

setWinLevel(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

setWorldLights(SoftwareLight[]) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet

Specify a set of software lights defined in world coordinates.

setWriteAsUnknownLength(boolean) - Method in class gov.nih.mipav.model.file.FileDicomSQ

Whether the sequence should be written using an unknown length, this includes adding a sequence delimitation item to the sequence.

setWriteAsUnknownLength(boolean) - Method in class gov.nih.mipav.model.file.FileDicomSQItem

Whether the sequence should be written using an unknown length, this includes adding a sequence delimitation item to the sequence.

setWriteHeaderOnly(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Sets the options to write only the .xml header if true

setWritePackBit(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets whether to write with packed bits compression.

setWriteQT(boolean) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

setWVPMatrix(Matrix4f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Set the World-view-projection matrix from the renderer.

setX(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

setX(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

setX(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setX(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

setX(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

setX(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Accessor to set the x value of the painted rectangle.

setX1Vector(Vector<Double>) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setX2Vector(Vector<Double>) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setXBar(float) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Sets the new location of the XBar.

setXBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the X Negative clipping plane position.

setXBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the X Negative clipping plane position.

setXBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the X Negative clipping plane position.

setXBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the X Negative clipping plane position.

setXBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the X positive clipping plane position.

setXBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the X positive clipping plane position.

setXBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the X positive clipping plane position.

setXBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the X positive clipping plane position.

setXBounds(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Accessor that set xBounds.

setXGridUserPositions(int[]) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setXLoc(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set x point location.

setXMLLinkedFilename(String) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets the xml linked filename (for XML files).

setXPoint(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

setXPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setXProbePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set probe x coordinate.

setXProbePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set probe x coordinate.

setXs(float[]) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setXs - accessor that sets the array of x coordinates to be plotted.

setxSep(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setXSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Change the color for the x crosshair.

setXSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the color of the X slice crosshairs.

setXSlicePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the current x slider move position.

setXSlicePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the current x slider move position.

setXSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the x slider and the labels beside and beneath it to the state given by flag.

setXSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets the x slider and the labels beside and beneath it to the state given by flag.

setXSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sets the x slider and the labels beside and beneath it to the state given by flag.

setXSliderInvEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the x slider and the labels beside and beneath it to the state given by flag.

setXSpace(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets x space (used for MINC images).

setXSpacing(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set x spacing around point.

setXStart(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets x start (used for MINC images).

setXTranslate(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the x translation.

setXY(double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex

setXYDim(int, int) - Method in class gov.nih.mipav.model.structures.VOI

Deprecated.

SetXYSpacing(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann

Sets the spacing of the search grid in x and y.

setY(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

setY(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

setY(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

setY(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

setY(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

setY(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Accessor to set the y value of the painted rectangle.

setY1Vector(Vector<Double>) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setY2Vector(Vector<Double>) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setYBar(float) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Sets the new location of the YBar.

setYBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the Y Negative clipping plane position.

setYBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the Y Negative clipping plane position.

setYBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the Y Negative clipping plane position.

setYBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the Y Negative clipping plane position.

setYBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the Y positive clipping plane position.

setYBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the Y positive clipping plane position.

setYBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the Y positive clipping plane position.

setYBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the Y positive clipping plane position.

setYBounds(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Accessor that set yBounds.

setYBR_FULL_422(boolean) - Method in class gov.nih.mipav.model.file.FileRaw

setYear(String) - Method in class gov.nih.mipav.model.file.FileInfoJSON

setYGridUserPositions(int[]) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setYInvert(int) - Method in class gov.nih.mipav.view.ViewJComponentGraph

setYLoc(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set y point location.

seType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

68 - Series Type.

setYPoint(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

setYPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setYProbePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set probe y coordinate.

setYProbePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set probe y coordinate.

setYs(float[]) - Method in class gov.nih.mipav.view.ViewJComponentFunct

setYs - accessor that sets the array of y coordinates to be plotted.

setySep(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setYSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Change the color for the y crosshair.

setYSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the color of the Y slice crosshairs.

setYSlicePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the current y slider move position.

setYSlicePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the current y slider move position.

setYSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the y slider and the labels beside and beneath it to the state given by flag.

setYSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets the y slider and the labels beside and beneath it to the state given by flag.

setYSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sets the y slider and the labels beside and beneath it to the state given by flag.

setYSliderInvEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the y slider and the labels beside and beneath it to the state given by flag.

setYSpace(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets y space (used for MINC images).

setYSpacing(int) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Accessor to set y spacing around point.

setYStart(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets y start (used for MINC images).

setYTranslate(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the y translation.

setZAxisFilter(String) - Method in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

setZAxisOffset(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets z axis offset.

setZAxisStep(float) - Method in class gov.nih.mipav.model.file.FileInfoAfni

Sets z axis step.

setZBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the Z negative clipping plane position.

setZBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the Z negative clipping plane position.

setZBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the Z negative clipping plane position.

setZBoundNeg(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the Z negative clipping plane position.

setZBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Setup the Z positive clipping plane position.

setZBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Setup the Z positive clipping plane position.

setZBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Setup the Z positive clipping plane position.

setZBoundPos(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the Z positive clipping plane position.

setZBounds(int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Accessor that set zBounds.

setZCompare(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Turns the ZBufferState compare mode on or off.

setZenith(float[]) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Sets zenith angle array for spherical direction

setZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

SetZero() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix

SetZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF

SetZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

SetZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

SetZero() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

setZeroDetectionType(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

Changes the type of zero crossing detection method used.

setZeroDetectionType(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep

Changes the type of zero crossing detection method used.

setZeroFillFactorRead(double) - Method in class gov.nih.mipav.model.file.FileInfoBRUKER

setZerofunused(boolean) - Method in class gov.nih.mipav.model.file.FileAnalyze

setZeroLengthFlag(boolean) - Method in class gov.nih.mipav.model.file.FileRaw

setZeroLengthFlag

setZeroToOneLUTAdj(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

setZfactor(double) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

setZfactor(double) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

setZfactor(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

setZfactor(double) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

setZip(boolean) - Method in class gov.nih.mipav.model.file.FileWriteOptions

setZoom(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the zoom parts of 2D matrix.

setZoom(double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the zoom parts of 2D matrix.

setZoom(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrix

Sets the zoom parts of 3D matrix.

setZoom(double, double, double) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Sets the zoom parts of 3D matrix.

setZoom(float) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Set the zoom factor.

setZoom(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Sets the magnification in both x and y directions.

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Sets the magnification in both x and y directions.

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the magnification in both x and y directions.

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Sets the magnification in both x and y directions.

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Sets the magnification in both x and y directions.

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

sets the screen scale variable when setZoom is called:

setZoom(float, float) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the scales that defines the magnification of the image.

setZoomB() - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the magnification of Image B.

setZoomDialogNull() - Method in class gov.nih.mipav.view.ViewJFrameImage

Sets the magnification dialog to null.

setZoomedAxes(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom

Sets the axes to which this scroll zoom is applied.

setZoomExact(float, float) - Method in class gov.nih.mipav.view.ViewJComponentBase

Sets the magnification to exactly the zoom specified values in both x and y directions.

setZoomFactor(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom

Sets the zoom factor of this ContourPlot.CoordSysScrollZoom.

setZPoint(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

setZPosition(double) - Method in class gov.nih.mipav.model.file.FileInfoLIFF

setZProbePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set probe z coordinate.

setZProbePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set probe z coordinate.

setZscore(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

setZSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Change the color for the z crosshair.

setZSliceHairColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets the color of the Z slice crosshairs.

setZSlicePos(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Set the current z slider move position.

setZSlicePos(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Set the current z slider move position.

setZSlider(int) - Method in class gov.nih.mipav.view.ViewControlsImage

Places the pointer on the (slice) slider bar to a location corresponding to the given slice value (within the set) without notifying the listeners.

setZSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the z slider and the labels beside and beneath it to the state given by flag.

setZSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets the z slider and the labels beside and beneath it to the state given by flag.

setZSliderEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sets the z slider and the labels beside and beneath it to the state given by flag.

setZSliderInvEnabled(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets the z slider and the labels beside and beneath it to the state given by flag.

setZSpace(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets z space (used for MINC images).

setZStart(float) - Method in class gov.nih.mipav.model.file.FileWriteOptions

Accessor that sets z start (used for MINC images).

setZStart(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

setZStop(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

DOCUMENT ME!

seUniq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

4 - The make-unique flag - GE internal.

sevenButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

sevenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

sevenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

DOCUMENT ME!

SEVERE - gov.nih.mipav.view.Preferences.LogLevel

seVersCre - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

172 - 2 bytes - Genesis Version - Created.

seVersCur - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

174 - 2 bytes - Genesis Version - Now.

sex - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

sex - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

sexComboBox - Variable in class gov.nih.mipav.view.JPanelEditSex

DOCUMENT ME!

sexes - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

sexField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

sfde - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

sfmin - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

DOCUMENT ME!

sfmin - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2

sform_code - Variable in class gov.nih.mipav.model.file.FileNIFTI

When sform_code > 0, The (x,y,z) coordinates are given by a general affine transformation of the (i,j,k) indexes: x = srow_x[0] * i + srow_x[1] * j + srow_x[2] * k + srow_x[3] y = srow_y[0] * i + srow_y[1] * j + srow_y[2] * k + srow_y[3] z = srow_z[0] * i + srow_z[1] * j + srow_z[2] * k + srow_z[3] sform_code has values for "Arbitrary X,Y,Z coordinate system", "Scanner based anatomical coordinates", "Coordinates aligned to another file's or to anatomical truth", "Talairach X,Y,Z coordinate system", and "MNI 152 normalized X,Y,Z coordinates".

SGILog24Compression - Variable in class gov.nih.mipav.model.file.FileSVS

SGILog24Compression - Variable in class gov.nih.mipav.model.file.FileTiff

SGILogCompression - Variable in class gov.nih.mipav.model.file.FileSVS

SGILogCompression - Variable in class gov.nih.mipav.model.file.FileTiff

SGN(double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sgnck - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

sgnd - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t

signed (1) / unsigned (0)

sgnd - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t

signed (1) / unsigned (0)

sgngam - Variable in class gov.nih.mipav.model.algorithms.Cephes

sH - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

SH - gov.nih.mipav.model.file.FileDicomTagInfo.VR

sha1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal

SHA1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Include

SHA1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal

shade - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

If true calculate the cluster shade Sum over i,j of ((i + j - x mean - y mean)**3) * Probability(i,j) For the symmetrical glcm x mean = y mean = glcm mean Sum over i,j over ((i + j - 2 * glcm mean)**3) * Probability(i,j) It is a measure of the degree to which the outliers in the histogram favor one side or another of the statistical mean.

shade - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

If true calculate the cluster shade Sum over i,j of ((i + j - x mean - y mean)**3) * Probability(i,j) For the symmetrical glcm x mean = y mean = glcm mean Sum over i,j over ((i + j - 2 * glcm mean)**3) * Probability(i,j) It is a measure of the degree to which the outliers in the histogram favor one side or another of the statistical mean.

shade - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

shade - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

shadeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

shadeCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

SHAMPINES_BALL_OF_FLAME - Variable in class gov.nih.mipav.model.algorithms.ODE

SHAMPINES_BALL_OF_FLAME - Variable in class gov.nih.mipav.model.algorithms.ODEEP

shan(double[], double[], double[], int, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SHAN - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME

shape - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo

shape - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

shape - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState

shape.

Shape() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry

Returns the corresponding shape.

Shape2Combined(CAAMShape, ModelSimpleImage, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Projects a shape into a set of c parameters.

Shape2Param(CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Projects a shape into a set of shape parameters,

Shape2PixelWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Return shape to pixel weight.

ShapeBasis() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Returns the shape PCA.

shapeBG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

DOCUMENT ME!

shapeConstraint - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

default shape constraint contribution:.

shapeDescriptor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

shapeDescriptor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

shapeDescriptor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

shape descriptor vector of VOI contours after AAM segmentation.

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor

ShapeFactor(float, float, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor

ShapeFreeImage(CDVector, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Wrapper to generates a shape free image using a vector of texture samples.

ShapeFreeImage(CDVector, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Generates a shape free image (that is; a mean shape image) using a vector of texture samples.

ShapeFreeImage(CDVector, CDMatrix, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Generates a shape free image (that is; a mean shape image) using a vector of texture samples.

ShapeHolder() - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder

Creates a new ShapeHolder object.

ShapeHolder(Object[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder

Creates a new ShapeHolder object.

ShapeInsideImage(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Tests if a shape is fully inside an image.

ShapeInsideImage(CAAMShape, ModelSimpleImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Tests if a shape is fully inside an image.

ShapeInstance(CDVector, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Generates a shape based on a set of model parameters.

shapeList - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder

DOCUMENT ME!

ShapeMovie(String, int, double, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer

Generates movies files showing each mode of shape variation by adjusting the each mode of variation to +/- 'range' times in 2*'step'+1 steps.

ShapeOverlap(CAAMShape, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Calculates the overlap between two shapes as specified in "Active Shape Model Segmentation With Optimal Features" Bram van Ginneken et al., IEEE TMI 21(8) Aug. 2002.

ShapeOverlap(CAAMShape, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Calculates the overlap between two shapes as specified in "Active Shape Model Segmentation With Optimal Features" Bram van Ginneken et al., IEEE TMI 21(8) Aug. 2002.

ShapePCA() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Returns the shape PCA.

ShapePCAInstance(CDVector, CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Generates a shape based on a set of shape b-parameters.

ShapeSimilarity - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity

Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.

ShapeSimilarity() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

ShapeSize() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Returns the 2-norm of this shape centralized.

shapeSliceBG - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

DOCUMENT ME!

ShapeStill(ModelSimpleImage, CAAMShape, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer

Plots a shape into an image and save it to disk.

ShapeTex2Combined(CAAMShape, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Projects the shape and texture into c-space i.e. the combined model parameters.

ShapeTex2Param(CAAMShape, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Extract the b-parameters from a shape and corresponding texture by inverting the shape and texture pca projection.

ShapeTexParam2Combined(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Transforms the concatenated b-parameters into combined model parameters.

ShapeTexParam2Combined(CDVector, CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Projects shape and texture parameters into the combined eigenspace.

ShapeTexParam2Combined(Vector<CDVector>, Vector<CDVector>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Converts a set of b-vectors to combined model parameters (c-vectors).

shapeVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

shapeVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

shared1 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col

shared1 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Row

shared2 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col

shared2 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Row

shared3 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col

shared4 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col

sharedAnnotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

sharedDrawable - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

sharedOutputDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

sharedRenderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

sharpen(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

sharpness - Variable in class gov.nih.mipav.model.file.FileSVS

sharpness - Variable in class gov.nih.mipav.model.file.FileTiff

SHcomp(double[][][], int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

SHEARWARP - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

shearwarpCameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

ShearWarpColor - Class in gov.nih.mipav.view.renderer.J3D.volumeview

The base class renderer to support shear-warp rendering of color images.

ShearWarpColor(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColor

Create a color renderer.

ShearWarpColorComposite - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for composition of voxel RGB color values with alpha blending and no lighting.

ShearWarpColorComposite(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite

Create an RGBA+lighting color renderer.

ShearWarpColorDRR - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for color volume data.

ShearWarpColorDRR(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR

Create an summed intensity renderer.

ShearWarpColorLighting - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for RGBA+lighting volume data.

ShearWarpColorLighting(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting

Create an RGBA+lighting color renderer.

ShearWarpColorMIP - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for color volume data.

ShearWarpColorMIP(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP

Create an summed intensity renderer.

ShearWarpIntensity - Class in gov.nih.mipav.view.renderer.J3D.volumeview

The base class renderer to support shear-warp rendering of intensity images (gray scale).

ShearWarpIntensity(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensity

Create an intensity renderer.

ShearWarpIntensityDRR - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for intensity volume data.

ShearWarpIntensityDRR(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR

Create an summed intensity renderer.

ShearWarpIntensityMIP - Class in gov.nih.mipav.view.renderer.J3D.volumeview

A renderer for intensity volume data.

ShearWarpIntensityMIP(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP

Create an summed intensity renderer.

shearwarpOptionsPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Control panels for the shearwarp render.

shearwarpRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

ShearWarpRenderer - Class in gov.nih.mipav.view.renderer.J3D.volumeview

The base class renderer to support shear-warp rendering.

ShearWarpRenderer(ModelImage, int, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Create a renderer.

shearwarpTabVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

shearWarpToolBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Shearwarp toolbar.

SHedge_ls(double[][], int, int, double[][][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

shi - Variable in class gov.nih.mipav.model.algorithms.Cephes

shichi(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes

SHICHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

shift - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

shift - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

shift(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

shift(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

shift(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial

Shift - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Transfer function shift:

shift_t(Matrix, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

shift_thresh - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection

shiftBack(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

Shifts the FFT data back from the center for processing purposes and inverse FFT.

shiftBack(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

Shifts the FFT data back from the center for processing purposes and inverse FFT.

shiftBlue(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel

blue shift

shiftBlue(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage

blue shift

shiftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog

DOCUMENT ME!

shiftCircle(Vector2f, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Translate the circle based on the current center and the difference between the current center and the mouse position.

ShiftCircle(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Translate the circle in the 2D Histogram panel.

shiftDown - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Flag used to indicate if the shift key is depressed.

shiftedChebyshev(double, int) - Method in class gov.nih.mipav.model.algorithms.Lmmin

shiftedChebyshev(double, int) - Method in class gov.nih.mipav.model.algorithms.LsqFit

shiftedChebyshev(double, int) - Method in class gov.nih.mipav.model.algorithms.NESolve

shiftedChebyshev(double, int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

shiftedChebyshevDerivative(double, int) - Method in class gov.nih.mipav.model.algorithms.LsqFit

shiftedChebyshevDerivative(double, int) - Method in class gov.nih.mipav.model.algorithms.NESolve

shiftedChebyshevDerivative(double, int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

shiftedImgB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

ShiftMid(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Moves the mid-line control-point.

ShiftMid(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

Moves the mid-line control-point.

ShiftMidTriangle(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

Move the middle-control point which controls the transfer function in the triangle:

shiftPressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

shiftRed(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel

red shift

shiftRed(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage

red shift

ShiftSquare(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

Translate the square in the 2D Histogram panel.

shiftT - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation

shiftT - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftTInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftToDivide - Variable in class gov.nih.mipav.model.file.FileRaw

Used in reading and writing boolean

shiftToDivide - Variable in class gov.nih.mipav.model.file.FileRawChunk

Used in reading and writing boolean

ShiftTriangle(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

Shifts the triangle along the bottom edge of the 2D Histogram, using the bottom control-point.

shiftX - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation

shiftX - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftXInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftY - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation

shiftY - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftYInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftZ - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation

shiftZ - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shiftZInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

shininess - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial

Disable specular lighting effects.

shininessPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Shininess panel.

shininessSlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Shininess slider.

shock_dt0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

shock_iters - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

SHORT - gov.nih.mipav.model.file.FileDicomTagInfo.NumType

A signed or unsigned short in 2's complement is stored in the tag's value.

SHORT - gov.nih.mipav.model.file.FileSVS.Type

16 bit unsigned

SHORT - gov.nih.mipav.model.file.FileTiff.Type

16 bit unsigned

SHORT - gov.nih.mipav.model.structures.ModelStorageBase.DataType

Data buffer is of type signed short (16 bits per voxel).

SHORT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill

DOCUMENT ME!

SHORT - Static variable in class gov.nih.mipav.model.file.FileDM3

Different encoded data types used in DM3 files.

SHORT - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SHORT - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

SHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the data buffer is of type signed short (16 bits per voxel).

SHORT_FLOAT - Static variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

short_name - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet

SHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate, as a String, that the data buffer is of type signed short.

shortcut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg

shortcut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg

ShortcutDialog() - Constructor for class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog

Creates a new ShortcutDialog object.

shortcutEd - Static variable in class gov.nih.mipav.view.ViewUserInterface

Key shortcut editor dialog.

shortcutRecording - Variable in class gov.nih.mipav.view.ViewUserInterface

Indicates whether the user is currently recording a new keyboard shortcut using the shortcut editor dialog.

shortcutsChanged - Variable in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

ShortCutted - Class in gov.nih.mipav.view

DOCUMENT ME!

ShortCutted(String, String, String) - Constructor for class gov.nih.mipav.view.ShortCutted

Creates a new ShortCutted object.

shortDescriptions - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

short description strings for each filterType.

shortMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

shortOp - Variable in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

shortPairs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

shortSectorSize - Variable in class gov.nih.mipav.model.file.FileZVI

shortSectorTable - Variable in class gov.nih.mipav.model.file.FileZVI

shortStreamStartSect - Variable in class gov.nih.mipav.model.file.FileZVI

shortToBytes(short, boolean, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase

converts from short to bytes

shortValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational

Returns the value of the specified number as a short.

ShotInfo() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

shouldSelectCell(EventObject) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor

shouldWeAcceptAbstractSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Should MIPAV accept the abstract syntax.

shouldWeAcceptApplicationContext(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

As it turn out we accept all application contexts.

shouldWeAcceptLocalAppTitle(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Accept all.

shouldWeAcceptRemoteAppTitle(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Accept only AETitles listed in the server host table (remote) *** We accept all AETitles at this time!

show - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

show() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer

Display the hidden progress bar and text

show(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

show(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

For generating the display of 1 or 2 RGB images.

show(int, int, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

For generating the display of 1 or 2 images.

show(int, int, boolean, String, float, float, float, float, float, float, float, float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage

For generating the display of 1 or 2 images.

show(int, int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Shows the image and the VOI(s).

show(int, int, ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage

Shows the image and the VOI(s).

show(int, int, ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Shows the image and the VOI(s).

show(int, int, ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage

Shows the image and the VOI(s).

show(int, int, ModelLUT, ModelLUT, boolean, int, String) - Method in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage

Shows the image and the VOI(s).

show(int, int, ModelLUT, ModelLUT, boolean, Vector3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Shows the image.

show(int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Shows the gray scale image(s).

show(int, ModelLUT, ModelLUT, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

shows the image and the VOI(s).

show(int, ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

show(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentLUT

Filters the model LUT through the LUT and produces an int array (aRGB) that can be convert to a java image for display purposes.

show(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentLUTTable

Filters the model LUT through the LUT and produces an int array (aRGB) that can be convert to a java image for display purposes.

show(ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Shows the surface, using the LUT to color the indices.

show(Component, int, int) - Method in class gov.nih.mipav.view.JScrollPopupMenu

SHOW_INTENSITY_GRAPH - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

used in the popup menu when the user right-clicks over a voi intensity line.

SHOW_LINE_ENDPOINTS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

used in the popup menu when the user right-clicks over a voi intensity line.

SHOW_LINES_ONLY - Static variable in class gov.nih.mipav.view.ViewJComponentGraph

SHOW_POINTS_AND_LINES - Static variable in class gov.nih.mipav.view.ViewJComponentGraph

SHOW_POINTS_ONLY - Static variable in class gov.nih.mipav.view.ViewJComponentGraph

show_trace - Variable in class gov.nih.mipav.model.algorithms.LsqFit

Show4D - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showAB(int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

showAllParameters - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

showAllSegmentationRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Button for displaying the full segmentation.

showAxes - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

If true, show XY, XZ, or ZY orientation axes in a corner of the component.

showAxes(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Turns displaying the Axis labes on or off:

showAxes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Turns displaying the Axis labels on or off:

showAxes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Turns displaying the Axis labels on or off:

ShowAxes - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showB1Check - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

showB1Map - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

showB1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

showBlank() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Resets the buffer to 0s and displays a blank image.

showBoundingBox(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turns showing the slice bounding box on/off.

showBoundingBox(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the bounding box for the given plane.

ShowBoundingBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

ShowBoundingBox(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Turns on/off displaying the bounding box for the given plane.

showBoundingRect - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

Specifies whether the user wants to show the cropping / paint bounds rectangle.

showBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Makes the box frame visible.

showBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Makes the box frame visible.

showBoxFrame() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Makes the box frame visible.

showBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Makes the box slice for the given orientation visible.

showBurnLabels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Flag indicates the show burning text label or not.

showBurnLabelsCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Show the burning text label checkbox.

showColorChooser() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

showColorDialog() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

showColorDialog() - Method in interface gov.nih.mipav.view.VOIHandlerInterface

Opens the color dialog for changing the selected VOI color.

showCrosshairs - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

If true, show crosshairs indicating the currently position within the component.

ShowCrossHairs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showCurvatureInfo(VOIBase, int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from the VOIManager.

showDataBuffer(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket

Utility method to dump hex and ASCII to the MIPAV debug frame.

showDebug - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

showDecInf - Variable in class gov.nih.mipav.model.file.FileJP2

showDialog(Component, String, String) - Method in class gov.nih.mipav.view.FileSelectorImpl

Sets up the parameters and show the dialog to let user make selection.

showEditImageInfo() - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

showFaceSegmentation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

when true, display the face segmentation

showFaceSegmentation - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

showFaceSegmentationRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Button for displaying the face segmentation.

showFilteredTransform - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

showFilteredTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

showFitFunction - Variable in class gov.nih.mipav.view.ViewJComponentFunct

DOCUMENT ME!

showFittedFunctions - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

Flag to show frame during each algorithm method call.

showFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Flag to show frame during each algorithm method call.

showFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Not used now.

showFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

showFrameBorder - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate

DOCUMENT ME!

showFrameBorder - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

showFunction - Variable in class gov.nih.mipav.view.ViewJComponentFunct

DOCUMENT ME!

showFunctions - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showGraph - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

showGridBox - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions

DOCUMENT ME!

showGridLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showGridOverlay(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Draws a grid on top of the image according to the gridSpacingX and gridSpacingY.

showHistogram() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Show the histogram without filtering it through a LUT.

showHistogram() - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

Show the histogram without filtering it through a LUT.

showHistogram(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Placeholder.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showHistogram(ModelLUT) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

Filters the histogram through the LUT and produces an int array (aRGB) that can be converted to a java image of the histogram for display purposes.

showIntensityGraph() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Shows a graph of the average intensities through a volume (calculated from AlgorithmPointArea).

showIntensityInfo(VOIBase, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from the VOIManager.

showInterImages - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

Whether intermediate images should be displayed during pipeline processing

showInterImages - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

showInterImagesBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

showIntermediateImages - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

Whether to show the intermediate images generated during the BSE algorithm.

showIntermediateImages - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Whether to show images from intermediate steps of the BSE algorithm.

showIntermediateImagesCB - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Checkbox to show images which can help in paramater tweaking.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

display kernel as 1 or 0 in the debug window.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

display kernel as 1 or 0 in the debug window.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

Display kernel as 1 or 0 in the debug window.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

display kernel as 1 or 0 in the debug window.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

display kernel as 1 or 0 in the debug window.

showKernel() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Display kernel as 1 or 0 in the debug window.

showLabels - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Flag to show the burning point label.

showLattice(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

showLattice(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Turns on/off lattice display:

showLatticeLabels(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

showLatticeLabels(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

showLegend - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showLicense() - Method in class gov.nih.mipav.view.ViewUserInterface

Displays the MIPAV Software Transfer Agreement in a JDialogText window.

showLicense(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface

Displays the MIPAV Software Transfer Agreement in a JDialogText window.

showLineEndPoints(VOIBase, Graphics) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

showLineVOIAngleBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

showLUTRecorder() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Show the LUT recorder dialog.

showM0Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

showMagIntensity - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Flag used to indicate that the intensity values of the image should be displayed in the magnified portion of the image.

showMAPplot - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM

showMAPplot - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

showMAPplotCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

showMarker(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

showMessage(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Shows a message in the GUI message panel.

showMessage(String) - Method in class gov.nih.mipav.view.DICOMDisplayer

Displays the message in the appropriate column.

showMinorTickMarks - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showModel(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

showModel(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

showNumbers - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

whether to number each z slice for 4D

showNumbers - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

showNumbers - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

equals zDim of original 4D before 4D to 3D conversion.

showNumbers - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

equals zDim of original 4D before 4D to 3D conversion.

showOpenDialog(Component) - Method in interface gov.nih.mipav.view.FileSelector

Shows the open dialog to retrieve the user's input, the approve button will be "Open", and title will be "Open Image", only files are displayed, multi selection will be allowed.

showOpenDialog(Component) - Method in class gov.nih.mipav.view.FileSelectorImpl

ShowOrientationCube - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showOutputWindow - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

showOverlay(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Displays Image overlays (DICOM or image attributes).

showOverlayBox - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay

showPane(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

Displays the panel with the given name.

showPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

showPointsAndLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

showPrivate - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

showPrivateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

showProgress - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility

showProgress - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP

showProgress - Variable in class gov.nih.mipav.model.file.FileOME

Whether to show a progress bar while processing the file.

showProgress - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Display the deconvolved image every X images to show progress:

showProgress(String, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Forest.showProgress

showR1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

showRegionInfo(int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuantify

Display statistics about the grown region.

showRegionInfo(int[], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmQuantify

Display statistics about the grown region.

showRegionInfo(int, double[], double[], double[], String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Display statistics about the grown region.

showRegionInfo(int, float[], float[], float[], String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Display statistics about the grown region.

showRegionInfo(int, String) - Method in interface gov.nih.mipav.view.PaintGrowListener

Display statistics about the grown region.

showRegionInfo(int, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Display statistics about the grown region.

showResultCB - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

showRGB() - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Show RGB histogram.

showRGB(int[], int) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB

DOCUMENT ME!

showSaveAsDialog(Component) - Method in interface gov.nih.mipav.view.FileSelector

Shows the save as dialog to retrieve the user's input, the approve button will be "Save", and title will be "Save Image As", only file are displayed, multi selection is not allowed.

showSaveAsDialog(Component) - Method in class gov.nih.mipav.view.FileSelectorImpl

showSaveDialog(Component) - Method in interface gov.nih.mipav.view.FileSelector

Shows the open dialog to retrieve the user's input, the approve button will be "Save", and title will be "Save Image", only directory are displayed, multi selection is not allowed.

showSaveDialog(Component) - Method in class gov.nih.mipav.view.FileSelectorImpl

showSegmentedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

showSegmentedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

showSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

showSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

showSelectedVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

showSelectedVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

showSelectedVOI(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

showSelectedVOI(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager

showSelectedVOI(MouseEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

showShortcutEditor(boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Opens a dialog for viewing/modifying shortcuts.

showSkullSegmentation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

when true, display the skull segmentation

showSkullSegmentation - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

showSlice(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Turns showing the slice on/off.

showSlice(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Turns on/off displaying the given plane.

ShowSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

ShowSlice(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Turns on/off displaying the given plane.

ShowSliceBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showSliceNumber - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

showSliceNumber - Variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

showSplashGraphics() - Method in class gov.nih.mipav.view.ViewUserInterface

Shows the MIPAV splash screen for a few seconds, or until the user clicks it.

showStatisticsCalculator() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Opens a JDialogStatistics to allow computation ofROI statistics.

showStatisticsCalculator() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Opens a JDialogStatistics to allow computation ofROI statistics.

ShowSurface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

Turns rendering the planes with the surface mask on/off.

ShowSurface(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Turns rendering the planes with the surface mask on/off.

showT1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

showTags(ViewTableModel, FileDicomTagTable, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Shows the "Other Image Information", with or without private tags.

showTags(ViewTableModel, FileInfoDicom, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Shows the "Other Image Information", with or without private tags.

showTagsNoCheckbox(ViewTableModel, FileInfoDicom, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Shows the "Other Image Information", with or without private tags.

showTalairachGrid - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

Whether to show the talairach grid on the component.

showTalairachGrid - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Flag for showing the Talairach grid on the component images.

showTalairachGrid(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets whether or not lines dividing the Talairach regions are shown.

showTalairachGridmarkers - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

Whether to show the talairach gridmarkers on the component.

showTalairachGridmarkers(boolean) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Sets whether the talairach grid markers will be displayed.

showTalairachPosition - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Flag for showing the Talairach position on the component images.

showTextBox(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Turns displaying the text on or off.

showTotals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Whether or not to show totals for each calculation.

showTotals - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions

A check box to opt for VOI totals.

showTotals - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

DOCUMENT ME!

showTransform - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

showTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

ShowUsage(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.PoissonRun

ShowUsage(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.test

showUsingOrientation(int, int[], int[], boolean, boolean) - Method in class gov.nih.mipav.view.PatientSlice

For generating the display of one or two ModelImages (imageA and imageB).

showUsingOrientation(int, int[], int[], boolean, boolean, float, boolean) - Method in class gov.nih.mipav.view.PatientSlice

For generating the display of one or two ModelImages (imageA and imageB).

showUsingOrientation(int, ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

For generating the display of 1 or 2 RGB images.

ShowVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

showVOIProperties() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

showVOIs - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

showWebHelp(String) - Static method in class gov.nih.mipav.view.MipavUtil

Pops up the MIPAV help for a given wiki help page.

showX() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

showX() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

showX() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

showXHairs(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Turns displaying the X and Y bars on or off:

showXHairs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Turns displaying the X and Y bars on or off:

showXHairs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Turns displaying the X and Y bars on or off:

showXMLThumbnail - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

showXYZLegends() - Method in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

showY() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

showY() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

showY() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

showZ() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

showZ() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

showZ() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

shrink - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

The factor by which the data is subsampled to a lower resolution in estimating the slowly varying non-uniformity field.

shrink - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

shrink - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

shrink - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

shrink - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

shrinking - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

shrinking - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

shuffle(Vector<Integer>, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

Shuffle() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Shuffles (randomizes) the vector.

shuffleAndSplit(Vector<Integer>, Vector<Integer>, int, int, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

shuffleAndSplitAppend(Vector<Integer>, Vector<Integer>, int, int, Vector<Integer>, Random) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

ShuffleData() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Shuffle each dimension in all data items over all observations.

shuffleList() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

Read 3D images atlas directory.

shutdown() - Method in class gov.nih.mipav.model.structures.ReminderThread

DOCUMENT ME!

shutdown() - Method in class gov.nih.mipav.model.structures.TimeoutThread

DOCUMENT ME!

shutterSpeed - Variable in class gov.nih.mipav.model.file.FileSVS

shutterSpeed - Variable in class gov.nih.mipav.model.file.FileTiff

shutterSpeedToExposureTime(double) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions

Converts a shutter speed to an exposure time.

si - Variable in class gov.nih.mipav.model.algorithms.Cephes

si - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU

si - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU

Si - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

Si() - Method in class gov.nih.mipav.util.DoubleDouble

siCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X

siCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sici(double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes

SICI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sideLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

sidePointsForCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid

sidePointsForCurvature - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

Maximum number of points to take from each side of a point on a curve in determining a curvature

sidePointsForTangent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse

sidePointsForTangent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola

sidePointsForTangent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola

sidePointsForTangent - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

Maximum number of points to take from each side of a point on a curve in determining a tangent

sidePointsForTangent - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

Maximum number of points to take from each side of a point on a curve in determining a tangent

sidePointsForTangent - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

Maximum number of points to take from each side of a point on a curve in determining a tangent

sidePointsForTangent - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

Maximum number of points to take from each side of a point on a curve in determining a tangent

sideText - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

sideText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

sideText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

sideText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

sideText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

SIEMENS - gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType

siemensScanner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

siemensScanner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

SiemensStudyDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SiemensStudyDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SiemensStudyDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SiemensStudyTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SiemensStudyTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SiemensStudyTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

SIEMENSTEXT - Static variable in class gov.nih.mipav.model.file.FileUtility

Extension: .hdr for header, .img for data

SIFT - Class in gov.nih.mipav.model.algorithms

Copyright (C) 2007-11, Andrea Vedaldi and Brian Fulkerson Copyright (C) 2012-13, The VLFeat Team All rights reserved.

SIFT() - Constructor for class gov.nih.mipav.model.algorithms.SIFT

SIFT - default constructor.

SIFT(String[], String[], boolean, boolean, String, String, String, String, String, String, int, int, int, double, double, double, double, double, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.SIFT

SIFT_cl_kernels() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.SIFT_cl_kernels

SIFT.FitMosaicModel - Class in gov.nih.mipav.model.algorithms

SIFT.ikeysComparator - Class in gov.nih.mipav.model.algorithms

SIFT.VlFileMeta - Class in gov.nih.mipav.model.algorithms

SIFT.VlPgmImage - Class in gov.nih.mipav.model.algorithms

SIFT.VlSiftFilt - Class in gov.nih.mipav.model.algorithms

------------------------------------------------------------------

SIFT.VlSiftKeypoint - Class in gov.nih.mipav.model.algorithms

sift3d - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D

SIFT3D - Class in gov.nih.mipav.model.algorithms

SIFT3D() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D - default constructor.

SIFT3D(ModelImage, ModelImage, double, double, int, boolean, double, double, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_AZ_MAX_F - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_CROSS(SIFT3D.Cvec, SIFT3D.Cvec, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_DOT(SIFT3D.Cvec, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_L2_NORM(SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_L2_NORM_SQ(SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_MINUS(SIFT3D.Cvec, SIFT3D.Cvec, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_PLUS(SIFT3D.Cvec, SIFT3D.Cvec, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_SCALE(SIFT3D.Cvec, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_CVEC_TO_SVEC(SIFT3D.Cvec, SIFT3D.Svec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_desc_acc_interp(SIFT3D.SIFT3DC, SIFT3D.Cvec, SIFT3D.Cvec, SIFT3D.SIFT3D_Descriptor) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_Descriptor() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor

SIFT3D_Descriptor_store() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store

SIFT3D_detect_keypoints(SIFT3D.SIFT3DC, SIFT3D.Image, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_DOUBLE - gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type

SIFT3D_DUPLICATE_SLICES - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_err_thresh_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_err_thresh_default - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_extract_descriptors(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store, SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_FAILURE - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_FALSE - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_FILE_DOES_NOT_EXIST - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_FLOAT - gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type

SIFT3D_GAUSS_GET(SIFT3D.GSS_filters, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_GAUSS_WIDTH_FCTR - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_GAUSS_WIDTH_FCTR - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_have_gpyr(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_HELP - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_IM_CONTAINS_CVEC(SIFT3D.Image, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_IM_GET_GRAD(SIFT3D.Image, int, int, int, int, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_INCONSISTENT_AXES - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_INT - gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type

SIFT3D_MATCH_MAX_DIST - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_MATCH_MAX_DIST - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_matches_to_Mat_rm(SIFT3D.SIFT3D_Descriptor_store, SIFT3D.SIFT3D_Descriptor_store, int[], SIFT3D.Mat_rm, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_MUL_MAT_RM_CVEC(SIFT3D.Mat_rm, SIFT3D.Cvec, SIFT3D.Cvec) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_nn_match(SIFT3D.SIFT3D_Descriptor_store, SIFT3D.SIFT3D_Descriptor_store, double, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_nn_thresh_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_nn_thresh_default - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_num_iter_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_num_iter_default - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_ORI_SOLID_ANGLE_WEIGHT - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_ORI_SOLID_ANGLE_WEIGHT - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_PO_MAX_F - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_PYR_IM_GET(SIFT3D.Pyramid, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_PYR_LAST_LEVEL(SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_PYR_LAST_OCTAVE(SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_RANSAC_REFINE - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_RANSAC_REFINE - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

SIFT3D_RESIZE_SLAB(SIFT3D.Slab, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_SINGULAR - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_SUCCESS - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_TRUE - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_UNEVEN_SPACING - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_UNSUPPORTED_FILE_TYPE - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_VERSION - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D_WRAPPER_NOT_COMPILED - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

SIFT3D.Affine - Class in gov.nih.mipav.model.algorithms

SIFT3D.CL_data - Class in gov.nih.mipav.model.algorithms

SIFT3D.Cvec - Class in gov.nih.mipav.model.algorithms

SIFT3D.Gauss_filter - Class in gov.nih.mipav.model.algorithms

SIFT3D.GSS_filters - Class in gov.nih.mipav.model.algorithms

SIFT3D.Hist - Class in gov.nih.mipav.model.algorithms

SIFT3D.im_format - Enum in gov.nih.mipav.model.algorithms

SIFT3D.Image - Class in gov.nih.mipav.model.algorithms

SIFT3D.interp_type - Enum in gov.nih.mipav.model.algorithms

SIFT3D.Kernels - Class in gov.nih.mipav.model.algorithms

SIFT3D.Keypoint - Class in gov.nih.mipav.model.algorithms

SIFT3D.Keypoint_store - Class in gov.nih.mipav.model.algorithms

SIFT3D.Mat_rm - Class in gov.nih.mipav.model.algorithms

SIFT3D.Mat_rm_type - Enum in gov.nih.mipav.model.algorithms

SIFT3D.Mesh - Class in gov.nih.mipav.model.algorithms

SIFT3D.Pyramid - Class in gov.nih.mipav.model.algorithms

SIFT3D.Ransac - Class in gov.nih.mipav.model.algorithms

SIFT3D.Reg_SIFT3D - Class in gov.nih.mipav.model.algorithms

SIFT3D.Sep_FIR_filter - Class in gov.nih.mipav.model.algorithms

SIFT3D.SIFT_cl_kernels - Class in gov.nih.mipav.model.algorithms

SIFT3D.SIFT3D_Descriptor - Class in gov.nih.mipav.model.algorithms

SIFT3D.SIFT3D_Descriptor_store - Class in gov.nih.mipav.model.algorithms

SIFT3D.SIFT3DC - Class in gov.nih.mipav.model.algorithms

SIFT3D.Slab - Class in gov.nih.mipav.model.algorithms

SIFT3D.Svec - Class in gov.nih.mipav.model.algorithms

SIFT3D.Tform - Class in gov.nih.mipav.model.algorithms

SIFT3D.tform_type - Enum in gov.nih.mipav.model.algorithms

SIFT3D.Tps - Class in gov.nih.mipav.model.algorithms

SIFT3D.Tri - Class in gov.nih.mipav.model.algorithms

SIFT3DC() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3DC

SIFTAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

SIFTImageSimilarity - Class in gov.nih.mipav.model.algorithms

SIFTImageSimilarity() - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity

SIFTImageSimilarity(ModelImage, ModelImage, double, int, double, int, String) - Constructor for class gov.nih.mipav.model.algorithms.SIFTImageSimilarity

SIFTImageSimilarity.DMatch - Class in gov.nih.mipav.model.algorithms

SIFTImageSimilarity.DMatchComparator - Class in gov.nih.mipav.model.algorithms

SIFTImageSimilarity.KeyPoint - Class in gov.nih.mipav.model.algorithms

SIFTImageSimilarity.KeypointComparator - Class in gov.nih.mipav.model.algorithms

sig - Variable in class gov.nih.mipav.model.algorithms.ODE

sig - Variable in class gov.nih.mipav.model.algorithms.ODEEP

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation

The C++ source code for the port was downloaded from Pedro F.

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement

sigma - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameDisc

< center y-coordinate

sigma - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc

< center y-coordinate

sigma - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

sigma - Variable in class gov.nih.mipav.model.algorithms.FitGaussian

Sigma parameter

sigma - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

sigma - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

sigma - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint

< s coordinate.

sigma - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Gauss_filter

sigma - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity

sigma - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise

sigma - Variable in class gov.nih.mipav.model.algorithms.WishartVariateGenerator

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

DOCUMENT ME!

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

sigma - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

Sigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM.model

SIGMA - Variable in class gov.nih.mipav.model.algorithms.NelderMead

SIGMA_DO_Z_RES_CORRECTION - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Label used for the parameter indicating whether to correct the gaussian's standard deviation Z dimension using the ratio of the X and Z resolutions.

sigma_n - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid

sigma_n_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

sigma_nsq - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

sigma0 - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< nominal image smoothing.

sigma0 - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Pyramid

sigma0_default - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

sigma1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation

Reference: Retinex-Based Perceptual Contrast Enhancement in Images Using Luminance Adaptation by Qingtao Fu, Cheolkon Jung, and Kaiqiang Xu, IEEE Access, current version November 9, 2018, Digital Object Identifier 10.1109/ACCESS.2018.2870638.

sigma1 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

sigma16Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigma1Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigma2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation

sigma2 - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

sigma2 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

DOCUMENT ME!

sigma2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigma3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation

sigma3 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

sigma4Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigma8Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigmaC - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

sigmaColor - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

sigmaColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

sigmaGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigmak - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< smoothing of pyramid base.

sigmaLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

SigmaMakernoteDescriptor(MetadataExtractor.SigmaMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDescriptor

SigmaMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

sigmaMaxX - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigmaMaxY - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigmaMaxZ - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigmaMinX - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigmaMinY - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigmaMinZ - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

sigman - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

sigmanbinsText - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

sigmaonf - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising

sigmaonf - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

sigmaOnf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency

sigmap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

DOCUMENT ME!

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

sigmaPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

Standard deviations of the Gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

the kernel size to use in calculating the gradient magnitude image.

sigmas - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization

UnsharpMask sigmas, for blurring.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

Standard deviations of the Gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur

Standard deviations of the Gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGradientMagnitude

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian

Standard deviations of the gaussian used to calculate the kernels.

sigmas - Variable in class gov.nih.mipav.model.algorithms.GenerateDGaussian

standard dev. in each direction

sigmas - Variable in class gov.nih.mipav.model.algorithms.GenerateGaussian

standard dev. in each direction

sigmas - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

sigmas - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Std deviation of the Gaussian function.

sigmas - Variable in class gov.nih.mipav.model.GaussianKernelFactory

sigmas - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

sigmas - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

sigmas - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

SIGMAS - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Label used for the parameter indicating the unnormalized/uncorrected gaussian standard deviation to be used.

sigmasB - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

second sigma values for dual-deconvolution

sigmaSpace - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

sigmaSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

sigmaSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

sigmasPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

DOCUMENT ME!

sigmasPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

DOCUMENT ME!

sigmaText - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

sigmaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

sigmaU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

sigmaU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

sigmaU - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

sigmaU - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

sigmaU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

sigmaU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

sigmaV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

sigmaX - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D

sigmaX - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

sigmaY - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D

sigmaY - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

sigmoid(double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron

SIGMOID - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

SIGMOID - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

sigmoid_predict(double, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

sigmoid_predict(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

sigmoid_train(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

sigmoid_train(int, double[], double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

sigmoidNormalizedAlpha - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

sigmoidNormalizedBeta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

sign - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q

sign - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

sign - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q

sign(double) - Method in class gov.nih.mipav.model.algorithms.Covdet

sign(double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

sign(double) - Method in class gov.nih.mipav.model.algorithms.NESolve

sign(double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

sign(double, double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

sign(double, double) - Method in class gov.nih.mipav.model.algorithms.sproot

sign(double, double, double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils

sign(DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

SIGN(double, double) - Method in class gov.nih.mipav.model.structures.jama.SVD

sign2Axial - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

sign2ImgA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

signal2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

signal2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signal2Image - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signal2Index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

The index of a second optional signal VOI.

signal2Index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR

DOCUMENT ME!

signal2Index - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

signal2Index - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signalBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

DOCUMENT ME!

signalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

signalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

signalButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signalImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR

DOCUMENT ME!

signalImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signalIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach

DOCUMENT ME!

signalIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

The index of a required signal VOI.

signalIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR

DOCUMENT ME!

signalIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

signalIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

signalIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

signalResiduals(double, double[], double[], double, int, int, double[], double, double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

signalTest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

SIGNATURE_TYPE_MIXED - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

SIGNED - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

SIGNED_INTEGER - Static variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

SIGNED_PIXEL_REP - Static variable in class gov.nih.mipav.model.file.FileInfoDicom

(0028,0103) Pixel Representations

SignedDistanceCharacters() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters

significant_bits - Variable in class gov.nih.mipav.model.file.FileICS

signtype - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

signum() - Method in class gov.nih.mipav.util.DoubleDouble

Returns an integer indicating the sign of this value.

SigSet() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SigSet

sigyy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

SILENT - gov.nih.mipav.model.algorithms.CeresSolver.LoggingType

SILU - gov.nih.mipav.model.structures.jama.SuperLU.milu_t

silver - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

DOCUMENT ME!

sim_mat - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

similarity_penalty_weight - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions

similarityAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

Use serialVersionUID for interoperability.

SimilarityMeasure() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes

Returns the similarity measure.

similarityWindowSide - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter

Comparsion window.

similarityWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

simple - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

simple_convolve(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

simple_hrf_estimation() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

simple_retro_convolve(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

SimpleColorMap(int...) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap

Creates a new ContourPlot.SimpleColorMap with the specified colors and uniform spacing.

SimpleColorMap(int[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.SimpleColorMap

Creates a ContourPlot.SimpleColorMap with the specified colors and corresponding locations in the unit interval.

simpleEigenvalue(double[][], int, String, double[], int, double[], double[][]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

Calculate requested eigenvalues and eigenvectors of a matrix

simpleEigenvalueTest1() - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

simpleImg1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation

SimpleImages to describe ModelImage data, simpleImg2 is always registered image

simpleImg1 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Holds extents, other info about firstImage and SecondImage

simpleImg1 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

Holds extents, other info about firstImage and SecondImage

simpleImg1 - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Holds extents, other info about firstImage and SecondImage

simpleImg2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation

SimpleImages to describe ModelImage data, simpleImg2 is always registered image

simpleImg2 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Holds extents, other info about firstImage and SecondImage

simpleImg2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

Holds extents, other info about firstImage and SecondImage

simpleImg2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Holds extents, other info about firstImage and SecondImage

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of input image.

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of input image.

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of input image.

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of input image.

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of input image.

simpleInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of input image.

simpleInput_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of an image slice of the input image.

simpleInput_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of an image volume of the input image.

simpleInput_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of an image slice of the input image.

simpleInput_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of an image volume of the input image.

simpleInputSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of an image slice of the input image, subsampled by 16.

simpleInputSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of an image volume of the input image, subsampled by 16.

simpleInputSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of an image slice of the input image, subsampled by 16.

simpleInputSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of an image volume of the input image, subsampled by 16.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of input image, subsampled by 2.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of input image, subsampled by 2.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of input image, subsampled by 2.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of input image, subsampled by 2.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of input image, subsampled by 2.

simpleInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of input image, subsampled by 2.

simpleInputSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of an image slice of the input image, subsampled by 2.

simpleInputSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of an image volume of the input image, subsampled by 2.

simpleInputSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of an image slice of the input image, subsampled by 2.

simpleInputSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of an image volume of the input image, subsampled by 2.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of input image, subsampled by 4.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of input image, subsampled by 4.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of input image, subsampled by 4.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of input image, subsampled by 4.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of input image, subsampled by 4.

simpleInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of input image, subsampled by 4.

simpleInputSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of an image slice of the input image, subsampled by 4.

simpleInputSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of an image volume of the input image, subsampled by 4.

simpleInputSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of an image slice of the input image, subsampled by 4.

simpleInputSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of an image volume of the input image, subsampled by 4.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of input image, subsampled by 8.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of input image, subsampled by 8.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of input image, subsampled by 8.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of input image, subsampled by 8.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of input image, subsampled by 8.

simpleInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of input image, subsampled by 8.

simpleInputSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of an image slice of the input image, subsampled by 8.

simpleInputSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of an image volume of the input image, subsampled by 8.

simpleInputSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of an image slice of the input image, subsampled by 8.

simpleInputSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of an image volume of the input image, subsampled by 8.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of reference image.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of reference image.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of reference image.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of reference image.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of reference image.

simpleRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of reference image.

simpleRef_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of input image.

simpleRef_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of input image.

simpleRef_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of input image.

simpleRef_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of input image.

simpleRefSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of input image, subsampled by 16.

simpleRefSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of input image, subsampled by 16.

simpleRefSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of input image, subsampled by 16.

simpleRefSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of input image, subsampled by 16.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of reference image, subsampled by 2.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of reference image, subsampled by 2.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of reference image, subsampled by 2.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of reference image, subsampled by 2.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of reference image, subsampled by 2.

simpleRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of reference image, subsampled by 2.

simpleRefSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of input image, subsampled by 2.

simpleRefSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of input image, subsampled by 2.

simpleRefSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of input image, subsampled by 2.

simpleRefSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of input image, subsampled by 2.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of reference image, subsampled by 4.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of reference image, subsampled by 4.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of reference image, subsampled by 4.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of reference image, subsampled by 4.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of reference image, subsampled by 4.

simpleRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of reference image, subsampled by 4.

simpleRefSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of input image, subsampled by 4.

simpleRefSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of input image, subsampled by 4.

simpleRefSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of input image, subsampled by 4.

simpleRefSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of input image, subsampled by 4.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of reference image, subsampled by 8.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of reference image, subsampled by 8.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of reference image, subsampled by 8.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of reference image, subsampled by 8.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of reference image, subsampled by 8.

simpleRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of reference image, subsampled by 8.

simpleRefSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of input image, subsampled by 8.

simpleRefSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of input image, subsampled by 8.

simpleRefSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of input image, subsampled by 8.

simpleRefSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of input image, subsampled by 8.

simpleSort(int, int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream

simpleWeightI_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

simpleWeightI_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

simpleWeightI_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

simpleWeightI_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted input image.

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted input image.

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted input image.

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted input image.

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted input image.

simpleWeightInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted input image.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted input image, subsampled by 2.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted input image, subsampled by 4.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted input image, subsampled by 8.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted input image, subsampled by 8.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted input image, subsampled by 8.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted input image, subsampled by 8.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted input image, subsampled by 8.

simpleWeightInputSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted input image, subsampled by 8.

simpleWeightISub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

simpleWeightISub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

simpleWeightISub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

simpleWeightISub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

simpleWeightISub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

simpleWeightISub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

simpleWeightISub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

simpleWeightISub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

simpleWeightISub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

simpleWeightISub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

simpleWeightISub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

simpleWeightISub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

simpleWeightISub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

simpleWeightISub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

simpleWeightISub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

simpleWeightISub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

simpleWeightR_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of weighted input image.

simpleWeightR_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of weighted input image.

simpleWeightR_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of weighted input image.

simpleWeightR_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of weighted input image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted reference image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted reference image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted reference image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted reference image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted reference image.

simpleWeightRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted reference image.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted reference image, subsampled by 2.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted reference image, subsampled by 4.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRefSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Simple version of weighted reference image, subsampled by 8.

simpleWeightRSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of weighted input image, subsampled by 16.

simpleWeightRSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of weighted input image, subsampled by 16.

simpleWeightRSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of weighted input image, subsampled by 16.

simpleWeightRSub16_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of weighted input image, subsampled by 16.

simpleWeightRSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of weighted input image, subsampled by 2.

simpleWeightRSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of weighted input image, subsampled by 2.

simpleWeightRSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of weighted input image, subsampled by 2.

simpleWeightRSub2_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of weighted input image, subsampled by 2.

simpleWeightRSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of weighted input image, subsampled by 4.

simpleWeightRSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of weighted input image, subsampled by 4.

simpleWeightRSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of weighted input image, subsampled by 4.

simpleWeightRSub4_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of weighted input image, subsampled by 4.

simpleWeightRSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Simple version of weighted input image, subsampled by 8.

simpleWeightRSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Simple version of weighted input image, subsampled by 8.

simpleWeightRSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Simple version of weighted input image, subsampled by 8.

simpleWeightRSub8_1 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Simple version of weighted input image, subsampled by 8.

simplex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

simplex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

simplex_sort(NelderMead.simplex_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead

simplex_t() - Constructor for class gov.nih.mipav.model.algorithms.NelderMead.simplex_t

simplexCentre - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

simplexCentre - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

SimplexColProj(Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

simplexDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

Size of the simplex vertex array (5 == tx, ty, rot, zoomx, zoomy).

simplexDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

simplexDim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

simplexLineValues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

simplexLineValues - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

simplexNumber() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

SIMPLEXOPT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

SimplexProj(Matrix) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

simplexResiduals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

simplexResiduals - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

simplicity(double, double[], double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson

simplicity_max(double, double[], int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson

simplifiedInstances() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

sin() - Method in class gov.nih.mipav.util.DoubleDouble

For all real x, sin(x) = x - x**3/3!

sin(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

sin(double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

sin22 - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform

sinButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

sinc(double) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

sinc(double) - Method in class gov.nih.mipav.model.algorithms.SVM

sinc2(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sincKernel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

sincWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

sincx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

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sincy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

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sincz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

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SINGLE - gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType

SINGLE_EXPONENTIAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

SINGLE_LEVEL_DWT - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SINGLE_LEVEL_DWT - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

SINGLE_LINKAGE - gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType

SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality SPECT.

SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality SPECT.

SINGLE_SCALE - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

singleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

singleExpButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

SingleFrameEyetrackerMode - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage

singleInversion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

singleInvRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

singleLevelDWTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

singleLevelSet(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Creates a single level set.

singleLevelSet2(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Creates a single level set.

SingleLinkageClusteringComponentWithWeakLink() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SingleLinkageClusteringComponentWithWeakLinkAndStrongLink() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SingleLinkageClusteringGraphHasTwoComponents() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SingleLinkageClusteringOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.SingleLinkageClusteringOptions

singleSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

singleSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

singleSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

singleSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

singleSlice - Variable in class gov.nih.mipav.view.JPanelStatisticsList

Whether this list is dealing with lists of 2D contours.

singletonReference - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder

The reference to the only occurrance of this class.

singletonReference - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder

The reference to the only occurrance of this class.

singletonReference - Static variable in class gov.nih.mipav.model.scripting.ScriptRunner

The reference to the only occurrance of this class.

singletonReference - Static variable in class gov.nih.mipav.model.scripting.VariableTable

The reference to the only VariableTable which should ever be instantiated.

singleTSlice - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

SinglyEvenMagicSquare(int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

SingularValueDecomposition - Class in gov.nih.mipav.view.renderer.WildMagic.AAM

Singular Value Decomposition.

SingularValueDecomposition(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition

Construct the singular value decomposition

sinh() - Method in class gov.nih.mipav.util.DoubleDouble

For all real x, sinh(x) = x + x**3/3!

sinh(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

sinh(double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

sinusoidalData - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

Sinv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.LandData

Sit - gov.nih.mipav.model.file.MetadataExtractor.FileType

Site() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Site

siteidx - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

sitenbr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Site

sites - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

Sitx - gov.nih.mipav.model.file.MetadataExtractor.FileType

sixButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

sixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

sixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

sixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

sixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

sixItems(int, int, int, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems

sixItemsComparator() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItemsComparator

siz - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid

size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint

size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.uni_elt

size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D.intObject

size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D.intObject

DOCUMENT ME!

size - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D.intObject

DOCUMENT ME!

size - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Block

size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Chunk

size - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

size - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform

size - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdres

size - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat

size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Cache

size - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

size - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm

size - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint

size - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t

size - Variable in class gov.nih.mipav.model.structures.TableSorter.Arrow

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size - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux

size - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_TristripAux

size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache

size() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge

size() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath

Gets size of knots list

size() - Method in class gov.nih.mipav.model.scripting.parameters.ParameterTable

Returns the number of parameters contained in the table.

size() - Method in class gov.nih.mipav.model.structures.PointStack

Returns the number of points.

size() - Method in class gov.nih.mipav.model.structures.TransferFunction

Indicated the number of points in the function.

size() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet

DOCUMENT ME!

size() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

return number of non-zero entries in the matrix.

size() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

size() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge

size() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge

size() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

Size() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

Size(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

SIZE - Class in gov.nih.mipav.view.renderer.WildMagic.AAM

SIZE() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

SIZE(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

SIZE(POINT) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

SIZE(SIZE) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HomogeneousVectorParameterization

size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IdentityParameterization

size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

size_callocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t

size_hallocs - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mcore_t

size_log2(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SIZE_MAX_PLATEAU - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

size_penalty_weight - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions

SIZE_TESTING_COST_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

sizeArray - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

sizeC - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sizeCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

sizeConstraint - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

default size constraint contribution:.

SIZED_CIRCLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

DOCUMENT ME!

SIZED_CIRCLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

DOCUMENT ME!

SIZED_CIRCLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

DOCUMENT ME!

SIZED_CIRCLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

DOCUMENT ME!

SIZED_SPHERE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

DOCUMENT ME!

SIZED_SPHERE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

DOCUMENT ME!

SizedCostFunction(int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SizedCostFunction

SizedCostFunction(int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SizedCostFunction

sizedouble - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader

sizedoublecomplex - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader

sizeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

sizeI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction

sizeint - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.ExpHeader

sizeLimit - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

sizeList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

sizeof() - Method in class gov.nih.mipav.model.file.FileDicomTag

Gets the data size in bytes of the units held in this class.

sizeof_hdr - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Always of length 348.

sizeof_hdr - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Should always be a length of 348.

sizeof_hdr - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Always of length 348.

sizeof_hdr - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

sizePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

sizes - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter

Kernel dimensionality.

sizes - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

SizeTestingCostFunction(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SizeTestingCostFunction

sizeTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

sizeX - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

sizeX - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF

sizeX - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

sizeY - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

sizeY - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF

sizeY - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

sizeZ - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

sizeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

Skeleton3D - Class in gov.nih.mipav.view.renderer.flythroughview

Implementation of the 3D skeletonization of a binary volume based on the paper "Penalized-distance volumetric skeleton algorithm"; I.

Skeleton3D(ModelImage, ModelImage3DLayout) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.Skeleton3D

Create a 3D skeletonization of the specified binary volume of data.

skeletonize(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

Skeletonizes the image by using a lookup table to repeatedly remove pixels from the edges of objects in a binary image, reducing them to single pixel wide skeletons.

skeletonize(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Skeletonizes the image by using a lookup table to repeatedly remove pixels from the edges of objects in a binary image, reducing them to single pixel wide skeletons.

skeletonize(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Skeletonizes the image by using a lookup table to repeatedly remove pixels from the edges of objects in a binary image, reducing them to single pixel wide skeletons.

SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

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SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

DOCUMENT ME!

SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

DOCUMENT ME!

SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

DOCUMENT ME!

SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

DOCUMENT ME!

SKELETONIZE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

DOCUMENT ME!

skeletonizeAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

DOCUMENT ME!

skeletonizeAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

DOCUMENT ME!

skeletonizeAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

DOCUMENT ME!

skernelX - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

Kernels for the Smoothing kernel.

skernelY - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

DOCUMENT ME!

skernelZ - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

DOCUMENT ME!

skewness - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

Skewness() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the skewness the vector.

skewnessB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

skewnessDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

skewnessG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

skewnessR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

SKIN - Static variable in class gov.nih.mipav.model.structures.ModelLUT

Sets up the transfer function colors to be skin-colors.

skinPresetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Skin segmentation preset opacity transform function control button.

skip - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

skip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

skip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader

Skips forward in the sequence.

skip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

skip_blank() - Method in class gov.nih.mipav.model.algorithms.LSCM.Parser

skip_input_data(libjpeg.jpeg_decompress_struct, int) - Method in class gov.nih.mipav.model.file.libjpeg

skip_variable(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

SKIP_VARIABLE - Static variable in class gov.nih.mipav.model.file.libjpeg

skipBlocks(MetadataExtractor.SequentialReader) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifReader

skipBytes(byte[], int) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.TestHelper

skipBytes(int) - Method in class gov.nih.mipav.model.file.FileDicomBase

Skips to a new point in the buffer.

skipBytes(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

skipCommentAndWhiteSpace() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW

Skips any line in the header starting with '#' and any space, tab, line feed or carriage return.

skipInternal(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

SkipLines() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Skip comment line or empty line

skipPadding(int) - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream

skipPadding(int) - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream

skipPadding(int) - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream

skipPadding(int) - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream

skippedBytes - Variable in class gov.nih.mipav.model.file.FileNRRD

Number of bytes to skip

skippedEntity(String) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

Do nothing but show the entity we skipped.

skippedEntity(String) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler

Handle any skipped entities by writing them out to the debug window.

skippedEntity(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler

Do nothing but show the entity we skipped.

skippedEntity(String) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler

Do nothing but show the entity we skipped.

skippedEntity(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler

Do nothing but show the entity we skipped.

skippedEntity(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler

Do nothing but show the entity we skipped.

skippedLines - Variable in class gov.nih.mipav.model.file.FileNRRD

Number of lines to skip

skipPreCheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

skipTime - Variable in class gov.nih.mipav.model.file.FileAvi

skipToNonopaque(int, short[]) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

An array is maintained that keeps track of opaque intermediate pixels during the resampling phase.

skipVariable(int) - Method in class gov.nih.mipav.model.file.FileDicomJPEG

Skip this variable.

skr2Irregular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

skr2IrregularCIELab() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

skr2L1Regular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

skr2Regular(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

skr2RegularCIELab(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

skRadius - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

Width of the smoothing buffer.

skullRemoval() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

Main algorithm implementation, skull segmentation and removal.

SL - gov.nih.mipav.model.file.FileDicomTagInfo.VR

slab - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store

Slab() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Slab

SlantTransform - Class in gov.nih.mipav.model.algorithms

One dimensional forward and inverse slant transforms are ported from FORATRAN programs in Appendix A of AD-767 758 Technical Report Slant Transform Image Coding by Wen-Hsiung Cheng of the University of Southern California, prepared for the Advanced Research Projects Agency, Air Force Eastern Test Range, May 1973.

SlantTransform() - Constructor for class gov.nih.mipav.model.algorithms.SlantTransform

SlantTransform(ModelImage, ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.SlantTransform

sleepAmount - Variable in class gov.nih.mipav.view.ImageRegistryMonitor

DOCUMENT ME!

sleepAmount - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

DOCUMENT ME!

sleeptime - Variable in class gov.nih.mipav.model.structures.ReminderThread

DOCUMENT ME!

sleeptime - Variable in class gov.nih.mipav.model.structures.TimeoutThread

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark.CostFunction

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.model.file.FileUtility.nameSliceItem

slice - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Current slice of image

slice - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.view.dialogs.JDialogTextGE4X

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.view.PatientSlice

The 2D slice to extract from the ModelImage:.

slice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Current slice of 3D image, used to figure out XY plane to plot.

slice - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

slice - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

current slice for 3D images:

slice - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

slice - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

slice() - Method in class gov.nih.mipav.model.structures.VOIBase

Returns the slice value of the contour on every plane.

slice(int) - Method in class gov.nih.mipav.model.structures.VOIBase

Returns the point value the contour has in common if it lies in the given plane.

slice(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

SLICE - gov.nih.mipav.view.ViewJSlider.SliderType

SLICE - Static variable in class gov.nih.mipav.view.ViewJSlider

slice_dim - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Bits 4 and 5 of the dim_info character contain the slice_dim information. 0 for "No slice acquisition direction is present", 1 for "Slice acquisition in the x direction", 2 for "Slice acquisition in the y direction", and 3 for "Slice acquisition in the z direction".

slice_dim - Variable in class gov.nih.mipav.model.file.FileNIFTI

Bits 4 and 5 of the dim_info character contain the slice_dim information. 0 for "No slice acquisition direction is present", 1 for "Slice acquisition in the x direction", 2 for "Slice acquisition in the y direction", and 3 for "Slice acquisition in the z direction".

SLICE_GROUPING - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

SLICE_INDEX - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions

The label to use for the parameter indicating the index of the slice from which to set/retrieve the resolutions.

SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.file.FileDicom

SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions

The label to use for the parameter indicating the slice thickness.

slice_timeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

SLICE_XY - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

Constants for xy plane, yz plane and zx plane.

SLICE_XY - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

Constants for xy plane, yz plane and zx plane.

SLICE_XY - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

Constants for xy plane, yz plane and zx plane.

SLICE_YZ - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

SLICE_YZ - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

SLICE_YZ - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

SLICE_ZX - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

SLICE_ZX - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

SLICE_ZX - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

sliceAdaptiveTruncatedVectorMedianFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Allows a single slice to be filtered.

sliceAdaptiveVectorFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Allows a single slice to be filtered.

sliceAng - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

par/rec slice Angulation

sliceAng - Variable in class gov.nih.mipav.model.file.FileInfoSPAR

par/rec slice Angulation

sliceAng0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

sliceAng1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

sliceAng2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing

Area of a slice (Xdim * Ydim).

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices

Area of a slice (Xdim * Ydim).

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes

Area of a slice (Xdim * Ydim).

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

Area of a slice (Xdim * Ydim).

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

Area of a slice (Xdim * Ydim).

sliceArea - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices

Area of a slice (Xdim * Ydim).

sliceBox - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

sliceBuf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

The image slice that holds the VOI we are working on.

sliceBufferDouble - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

sliceBufferDouble - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

sliceBufferFloat - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

sliceBufferFloat - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

sliceButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

sliceCode - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

If this is nonzero, AND if slice_dim is nonzero, AND if slice_duration is positive, indicates the timing pattern of the slice acquisition.

sliceCode - Variable in class gov.nih.mipav.model.file.FileNIFTI

If this is nonzero, AND if slice_dim is nonzero, AND if slice_duration is positive, indicates the timing pattern of the slice acquisition.

SliceColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

sliceCosts - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

sliceCosts - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

sliceDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Dialog to turn the slices control box on and off.

sliceDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

sliceDistanceFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

Whether or not to calculate largest slice distance, true by default

sliceDuration - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Time used to acquire 1 slice.

sliceDuration - Variable in class gov.nih.mipav.model.file.FileNIFTI

Time used to acquire 1 slice.

sliceEnd - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Slice timing pattern ends with slice = (sliceEnd + 1)

sliceEnd - Variable in class gov.nih.mipav.model.file.FileNIFTI

Slice timing pattern ends with slice = (sliceEnd + 1)

sliceField - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

sliceFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Allows a single slice to be filtered.

sliceFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Allows a single slice to be filtered.

sliceFilterBorder(float[], float[], int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Allows a single slice to be filtered.

sliceFilterBorder(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Performs mode filtering on a single slice with a 2D or 3D buffer.

sliceFiltering - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

DOCUMENT ME!

sliceFiltering - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

do all filtering slice-by-slice, rather than as a volume.

sliceFiltering - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

do all filtering slice-by-slice, rather than as a volume.

sliceGapString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

slice gap String

sliceGradient - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

sliceGradientDuration - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

sliceGradientLimit - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

sliceGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

3D Slice-view user-interface panel:

sliceHdrSize - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

sliceIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

sliceImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice

DOCUMENT ME!

sliceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

sliceImageComponent2D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Each Texture2D adds a ImageComponent2D:

sliceImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

image vector.

sliceIndex - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions

index of the slice from which to retrieve the resolutions.

sliceIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

slice index for which fileInfo is saved *

sliceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet

sliceIndex1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

slice index for voi1

sliceIndex2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

slice index for voi2

sliceInfo - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

slice specific info

sliceLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

DOCUMENT ME!

sliceLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

DOCUMENT ME!

sliceList - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder

DOCUMENT ME!

sliceLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Used for construction of the preview.

sliceLocation - Variable in class gov.nih.mipav.model.file.FileInfoDicom

DICOM slice location.

sliceLocation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

SliceMap - Variable in class gov.nih.mipav.model.file.FilePARREC

slice map

sliceModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModel

sliceModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageModelSVM

sliceMultiplier - Variable in class gov.nih.mipav.model.file.FileGESigna4X

sliceMultiplier - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sliceNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

sliceNum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

sliceNum - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice

DOCUMENT ME!

sliceNum - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset

Slice value for removed dimension.

sliceNum - Variable in class gov.nih.mipav.model.file.FilePaintBitmap

File directory where the VOI is to read or written.

sliceNum - Variable in class gov.nih.mipav.model.file.FileVOI

File directory where the VOI is to read or written.

sliceNum - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

sliceNum - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

sliceNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

sliceNumber - Variable in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler

The slice the VOI contour should be on.

sliceNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

DOCUMENT ME!

sliceNumber - Variable in class gov.nih.mipav.view.dialogs.MyXMLHandler

The slice the VOI contour should be on.

sliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.SliceSetString

sliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler

The slice the VOI contour should be on.

sliceNumCache - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sliceOffset - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice

sliceOldNumber - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

red, green, and blue origContrast remains constant until applyButton is pressed, restores contrast if cancelButton is pressed.

sliceOldNumber - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

sliceOrientation - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

sliceOrientIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

sliceOrientPos - Variable in class gov.nih.mipav.model.file.FilePARREC

slicePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

slicePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dialog to turn the slices control box on and off.

slicePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dialog to turn the slices control box on and off.

slicePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

sliceParallelVectorFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Allows a single slice to be filtered.

SliceParameters - Variable in class gov.nih.mipav.model.file.FilePARREC

slice parameters

slicePosition - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

slicePosition - Variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

slicePosition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

sliceQuantity - Variable in class gov.nih.mipav.model.file.FileGESigna4X

sliceQuantity - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sliceRefNum - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

sliceRenum - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Reordering of slices/volumes.

sliceRenum - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Reordering of slices/volumes

sliceResolutions - Variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

slices - Variable in class gov.nih.mipav.model.file.FileTiff

Slices - Variable in class gov.nih.mipav.model.file.FilePARREC

slices

SLICES_COARSE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

DOCUMENT ME!

SLICES_FINE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Used to select which nodes in the switch is selected.

sliceSeparationMode - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

The slice inversion time of the scan

SliceSet - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

SliceSet(int, int, int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.SliceSet

SliceSetString(int, Vector<String>, Vector<String>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.SliceSetString

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The size, in voxels, of a slice of the volume.

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

xDim * yDim.

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Computed as xDim*yDim

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

sliceSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

sliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

sliceSize - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Number of pixels used by a slice/volume, includes colorFactor.

sliceSize - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

sliceSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Used for construction of the preview.

slicesPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

slicesPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

slicesPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

slicesPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

slicesPts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

sliceStart - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Slice timing pattern starts with slice = (sliceStart + 1)

sliceStart - Variable in class gov.nih.mipav.model.file.FileNIFTI

Slice timing pattern starts with slice = (sliceStart + 1)

slicesTextField - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sliceString - Variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

sliceStructure - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ImageAttribute

slicesVector - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

slices *

slicesWithTimeOffsets - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

slicesWithTimeOffsets - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

sliceTextures - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

ViewJComponentTriSliceImages -> Texture2D to display the image slices:

sliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoBase

The thickness of individual slices in the image volume.

sliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

26 in mm.

sliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

sliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoNRRD

sliceThickness - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

sliceThickness - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions

the slice thickness.

sliceThickness - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

sliceThicknessDisclaimer - Variable in class gov.nih.mipav.model.file.FileGESigna4X

sliceThicknessDisclaimer - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

sliceThicknessString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

sliec thickness

sliceThicknessTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

textfields *

sliceTime - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

sliceTouched - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Slices that have been examined in recursive structure for swapping slices.

SliceTransferable(int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable

sliceTransparency - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

ViewJComponentTriSliceImages -> Texture2D transparency values:

sliceType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

Insert an AVERAGE or BLANK image slice.

sliceType - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

DOCUMENT ME!

sliceVectorDirectionFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Allows a single slice to be filtered.

sliceVectorMagnitudeFilter(float[], float[], int, String) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Allows a single slice to be filtered.

sliceVisible - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Flags indicating if the image slices are on or off.

sliceVisible - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Flags indicating if the image slices are on or off.

SLIDE_MICROSCOPY - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality slide microscopy.

SLIDE_MICROSCOPY - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality slide microscopy.

slider - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

slider - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

slider - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

slider - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

slider2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

slider2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

sliderA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Static, static inverse and arbitrary clipping plane boundary box.

sliderControlPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

sliderCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Slider moves event counter.

sliderCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Slider moves event counter.

sliderEvents - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Slider events used by the mouse recorder.

sliderEvents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Slider events used by the mouse recorder.

sliderFrame - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Slider for frame/slice of image.

sliderLevMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

sliderLevMin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

sliderMax - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sliderMaxMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

labels at top and bottom of sliders indicating slider bounds *

sliderMaxMin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

labels at top and bottom of sliders indicating slider bounds *

sliderMinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

labels at top and bottom of sliders indicating slider bounds *

sliderMinMin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

labels at top and bottom of sliders indicating slider bounds *

sliderPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

DOCUMENT ME!

sliderPanel - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

sliderPanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

sliderT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sliders for the image planes.

sliderT - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sliders for the image planes.

sliderT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sliders for the image planes.

SliderType(String) - Constructor for enum gov.nih.mipav.view.ViewJSlider.SliderType

sliderWinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

sliderWinMin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

sliderX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sliders for the image planes.

sliderX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The probe X slider that control the probe push and pull movements.

sliderX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sliders for the image planes.

sliderXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sliders for the image planes.

sliderY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sliders for the image planes.

sliderY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sliders for the image planes.

sliderYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sliders for the image planes.

sliderZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sliders for the image planes.

sliderZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

3, 1-100%, dictating where the image in the surface should be displayed.

sliderZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sliders for the image planes.

sliderZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sliders for the image planes.

sln - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

slocfov - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

274 Slice offsets on frequency axis.

SLONG - gov.nih.mipav.model.file.FileSVS.Type

32 bit signed, again only 4 bytes

SLONG - gov.nih.mipav.model.file.FileTiff.Type

32 bit signed, again only 4 bytes

SLONG - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SLONG - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

slop_float_1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

676 Float Slop Field 1.

slop_float_2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

680 Float Slop Field 2.

slop_float_3 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

684 Float Slop Field 3.

slop_float_4 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

688 Float Slop Field 4.

slop_float_5 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

692 Float Slop Field 5.

slop_int_1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

656 Integer Slop Field 1.

slop_int_2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

660 Integer Slop Field 2.

slop_int_3 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

664 Integer Slop Field 3.

slop_int_4 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

668 Integer Slop Field 4.

slop_int_5 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

672 Integer Slop Field 5.

slop_int_6 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

974 Integer Slop Field 6.

slop_int_7 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

978 Integer Slop Field 7.

slop_int_8 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

982 Integer Slop Field 8.

slop_int_9 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

986 Integer Slop Field 9.

slop_str_1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

696 16 characters String Slop Field 1.

slop_str_2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

712 16 characters String Slop Field 2.

slope - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

slope - Variable in class gov.nih.mipav.model.structures.HQueue

DOCUMENT ME!

slope - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter

slope - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

The slope and offset of the total least squares line.

slopes - Variable in class gov.nih.mipav.model.structures.TransferFunction

The array of pre-calculated slope values.

slow - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse

slow - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

slow_decision_map(double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse

slow_di_pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit

slow_majority_filter(boolean[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse

slow_pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit

slow_tri_pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit

SLOW2DFCT(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

SLOW2DIFCT(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

slowButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

slowChirp(double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

SLOWFCT(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

SLOWIFCT(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

slowPPFT(double[][][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

slowppft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

slowRadon(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

slowradon3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

slquant - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

398 Number of slices in this scan group.

SLU_C - gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

SLU_D - gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

SLU_DN - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_DOUBLE - gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t

SLU_EXTRA - gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t

SLU_GE - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_HEL - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_HEU - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

slu_mmdelm_(int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

slu_mmdint_(int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

slu_mmdnum_(int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

slu_mmdupd_(int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

SLU_NC - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_NCP - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_NR - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_NR_loc - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

slu_PrintInt10(String, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

SLU_S - gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

SLU_SC - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_SCP - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_SINGLE - gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t

SLU_SR - gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

SLU_SYL - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_SYU - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_TRL - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_TRLU - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_TRU - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_TRUU - gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

SLU_Z - gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

slupdt(double[], double, int, double, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol

slvmul(int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol

sm - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix

sm2Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

DOCUMENT ME!

sm2Task(int, int, int, double[], double[], double[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

small - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges

small - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

small - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

small_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

small_list - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr

SMALL_NEF - Variable in class gov.nih.mipav.model.algorithms.CVODES

SMALL_NST - Variable in class gov.nih.mipav.model.algorithms.CVODES

small_pool_struct() - Constructor for class gov.nih.mipav.model.file.libjpeg.small_pool_struct

SMALL_THRESH - Static variable in class gov.nih.mipav.model.file.CBZip2OutputStream

small_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

smallCircularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

DOCUMENT ME!

smallestElement() - Method in class gov.nih.mipav.model.structures.IntVector

Gets the smallest in value element of array without removing it.

smallestImagePixelValue - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

smallestMagnitudeNegative - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudeNegativeB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudeNegativeG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudeNegativeR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudePositive - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudePositiveB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudePositiveG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestMagnitudePositiveR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

smallest magnitude negative and positive.

smallestToLargestAxisRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

smallestToLargestMajorAxisRatio - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration

smallLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

xDim * yDim.

smallN - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

smallPointerCursor - Static variable in class gov.nih.mipav.view.MipavUtil

Custom cursor: small pointer.

smallPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

smallPos - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

smallPos3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

smallSliceSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

smallX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

smallX - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

smallY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

smallY - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

SMART - gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

smartCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

smartNoiseField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

sMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Mask for shrunken buffer.

smax - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

smax - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

smax - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

smax - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

smax - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

sMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Maximum value of shrunken buffer.

SMILU_1 - gov.nih.mipav.model.structures.jama.SuperLU.milu_t

SMILU_2 - gov.nih.mipav.model.structures.jama.SuperLU.milu_t

SMILU_3 - gov.nih.mipav.model.structures.jama.SuperLU.milu_t

smin - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

smin - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

smin - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

sMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Minimum value of shrunken buffer.

Smin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

smirnov(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

SMIRNOV - Static variable in class gov.nih.mipav.model.algorithms.Cephes

smirnovi(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

SMIRNOVI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

SMNAB(int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

smofil_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

smooth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

smooth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

smooth - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

SMOOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

SMOOTH_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes

Use smoothing model to perform triangle consistency.

smooth1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

smooth1 and smooth2 are only used with gain field correction.

smooth1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

smooth1 and smooth2 are only used with gain field correction.

smooth1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

smooth1 and smooth2 are only used with gain field correction.

SMOOTH1 - Static variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Smooth type: SMOOTH1 corresponds to ModelTriangleMesh.smoothMesh()

smooth1Button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Smooth button.

smooth1Button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Smooth button.

smooth2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

smooth2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

smooth2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

SMOOTH2 - Static variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Smooth type: SMOOTH2 corresponds to ModelTriangleMesh.smoothTwo()

smooth2Button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Smooth button.

smooth2Button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Smooth button.

SMOOTH3 - Static variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Smooth type: SMOOTH3 corresponds to ModelTriangleMesh.smoothThree()

smooth3Button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Smooth button.

smooth3Button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Smooth button.

smoothAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

smoothAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

smoothAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

smoothB1Box - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

smoothB1Field - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

smoothB1Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

smoothCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

smoothCurve(VOIContour, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

smoothCurve(VOIContour, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Generates the Natural Spline for the lattice center-line curve.

smoothCurve(Vector<VOIWormAnnotation>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

smoothedIntensity(ModelImage, ModelImage, double, double, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

smoothFace(BitSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Connects near neighbors of set values in removeRegion.

smoothField(double[][], float[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

smoothFieldB(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

smoothGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

smoothGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

smoothing - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite

smoothing - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

smoothing_ok(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

smoothing2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

Performs 2D and 2.5 nonlinear smoothing.

smoothing3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

Performs 3D nonlinear smoothing.

smoothingKernel - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

smoothMesh(int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Smooth mesh.

smoothMesh(int, float, boolean, float, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Smooth mesh.

smoothMesh(String, int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Smooth the given surface.

smoothMesh(String, int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Smooth the given surface.

smoothness - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

smoothness - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake

The maximum angle we want to have between points in the result VOI.

smoothness - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

smoothness - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

smoothPath(int, LinkedList, LinkedList, LinkedList, LinkedList, LinkedList, LinkedList) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Smooth the path.

smoothPath(TriMesh, int, LinkedList<Integer>, LinkedList<Integer>, LinkedList<Integer>, LinkedList<Integer>, LinkedList<Integer>, LinkedList<Vector4f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Smooth the path.

smoothSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

smoothSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

smoothSize - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Optional smooth parameter for both cost functions

smoothSurface(int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Smoothes the selected surfaces.

smoothSurface(SurfaceAttributes[], int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Smoothes the selected surfaces.

smoothThree(int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Smooth mesh.

smoothThree(int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Smooth mesh.

smoothThree(String, int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Smooth the given surface.

smoothThree(String, int, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Smooth the given surface.

smoothTwo(int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Derived from the first 2 of the 3 components of AlgorithmBrainExtraction Note that m_fStiffness does not increase and then decrease as in AlgorithmBrainExtraction but instead remains constant.

smoothTwo(int, float, boolean, float, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Derived from the first 2 of the 3 components of AlgorithmBrainExtraction Note that m_fStiffness does not increase and then decrease as in AlgorithmBrainExtraction but instead remains constant.

smoothTwo(String, int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Smooth the given surface.

smoothTwo(String, int, float, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Smooth the given surface.

smoothVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

smoothVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

smoothVOI(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

smoothVOI120(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Convert the mask image to VOI with 120 points.

smoothVOI120(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Convert the mask image to VOI with 120 points.

smoothVOI120Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI120Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI120Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI120Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI120Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

smoothVOI128(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

smoothVOI128double(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

smoothVOI128single(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

smoothVOI128single(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

smoothVOI150Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI150Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI150Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI150Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI150Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt

Smooth the AAM initial generated contour with 30 landmark points.

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

Smooth generated VOI contours by 30 points.

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Smooth VOI with 30 points.

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

smoothVOI30(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

smoothVOI30Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI30Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI30Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI32(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

smoothVOI50(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Convert the mask image to VOI with 50 points

smoothVOI50(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Convert the mask image to VOI with 50 points

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

Smooth VOIs to 60 points.

smoothVOI60(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

Smooth VOIs to 60 points.

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI60DualContour(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

smoothVOI60Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI60Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI60Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI60Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI60Single(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVOI60Special(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

smoothVOIFlag - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

smoothVOISingle(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOISingle(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOISingle(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOISingle(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

smoothVOISingle(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

smoothVOISingle(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

smoothVOISingle(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

smoothVOISingle(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

smoothVolumeLookup2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

smoothVolumeLookup3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

smu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SMU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

sn - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

sn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

sn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t

sn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t

SN - Static variable in class gov.nih.mipav.model.algorithms.JacobianElliptic

snakeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

snakeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

SnakeInitialiser() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

SnakeNode() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

snapButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Camera button.

snapToTarget - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Whether to snap to center of a target surface when it is selected; defaults to true.

snapToTargetCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Checkbox indicating whether to snap to center of a target surface when it is selected.

snnAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

sNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X

sNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

snp_data - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data

snpa() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SNPA - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

snrAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

DOCUMENT ME!

snrAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

snrAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

SNSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sobelAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSobel

DOCUMENT ME!

socket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

socket used to connect to server.

socket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Socket

Socket object.

SOF0 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (0) segment identifier for Baseline DCT.

SOF0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF1 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (1) segment identifier for Extended sequential DCT.

SOF1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF10 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (10) segment identifier for Progressive DCT.

SOF10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF11 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (11) segment identifier for Lossless (sequential).

SOF11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF13 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (13) segment identifier for Differential sequential DCT.

SOF13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF14 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (14) segment identifier for Differential progressive DCT.

SOF14 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF14 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF15 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (15) segment identifier for Differential lossless (sequential).

SOF15 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF15 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF2 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (2) segment identifier for Progressive DCT.

SOF2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF3 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (3) segment identifier for Lossless (sequential).

SOF3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF5 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (5) segment identifier for Differential sequential DCT.

SOF5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF6 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (6) segment identifier for Differential progressive DCT.

SOF6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF7 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (7) segment identifier for Differential lossless (sequential).

SOF7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

SOF9 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start-of-Frame (9) segment identifier for Extended sequential DCT.

SOF9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOF9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

soft - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

soft(double[][], double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

soft(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

soft(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

soft(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

soft(double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

soft(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

soft(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform

soft(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform

soft(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform

soft(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

SOFT - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

SOFT - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

SOFT_THRESHOLDING - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

SOFT_THRESHOLDING - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

softButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

softButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

softButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

SoftLineSearch(CDVector, double, CDVector, CDVector, CDVector, double[], boolean[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

Perform line search Given g'p < 0 and alpha < 1/2 (alpha = 1e-4 is used), find plus = xc + lambda p,lambda in [0;1], such that f(xplus) <= f(xc) + alpha * lambda * g'p, using backtracking line search Algorithm A6.3.1 p. 325 Dennis and Schnabel, Numerical Methods for Unconstrained Optimization and Nonlinear Equations 1983, Prentice-Hall Input: xc: parameter fc: function value at xc g: gradient at xc sn: search direction Output: xplus: new parameter fplus: function value for new parameter maxtaken: max taken in line search return termination code

SoftLOneLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss

softness - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising

softness - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

software - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

software - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

software - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

software - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

SOFTWARE - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SOFTWARE - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

SOFTWARE - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

SOFTWARE - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

SoftwareLight - Class in gov.nih.mipav.view.renderer.J3D

The base class for lights in a general lighting system to calculate colors at a point in space.

SoftwareLight() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLight

Construct a light.

SoftwareLight(SoftwareLight) - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLight

Copy (deep) constructor.

SoftwareLightAmbient - Class in gov.nih.mipav.view.renderer.J3D

The class for ambient lights in a general lighting system to calculate ambient colors at a point in space.

SoftwareLightAmbient() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightAmbient

Construct an ambient light.

SoftwareLightAmbient(SoftwareLightAmbient) - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightAmbient

Copy (deep) constructor.

SoftwareLightDirectional - Class in gov.nih.mipav.view.renderer.J3D

The class for directional lights in a general lighting system to calculate diffuse and specular colors at a point in space.

SoftwareLightDirectional() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

Construct a directional light.

SoftwareLightDirectional(SoftwareLightDirectional) - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

Copy (deep) constructor.

SoftwareLightPoint - Class in gov.nih.mipav.view.renderer.J3D

The class for point lights in a general lighting system to calculate diffuse and specular colors at a point in space.

SoftwareLightPoint() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

Construct a point light.

SoftwareLightPoint(SoftwareLightPoint) - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

Copy (deep) constructor.

SoftwareLightSet - Class in gov.nih.mipav.view.renderer.J3D

This class maintains a set of SoftwareLight instances where each light can be of type ambient, directional, point, or spot.

SoftwareLightSet() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet

Default constructor.

SoftwareLightSpot - Class in gov.nih.mipav.view.renderer.J3D

The class for spot lights in a general lighting system to calculate diffuse and specular colors at a point in space.

SoftwareLightSpot() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Construct a spot light.

SoftwareLightSpot(SoftwareLightSpot) - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

Copy (deep) constructor.

SoftwareMaterial - Class in gov.nih.mipav.view.renderer.J3D

This class maintains the following material properties:

SoftwareMaterial() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial

Default constructor.

softwareVersions - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

SoftwareVertexProperty - Class in gov.nih.mipav.view.renderer.J3D

This class maintains the following properties for a vertex.

SoftwareVertexProperty() - Constructor for class gov.nih.mipav.view.renderer.J3D.SoftwareVertexProperty

Default constructor.

SOI - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Start Of Image segment identifier.

SOI - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOI - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

sol_b - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

SOL_COMM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

sol_eta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

sol_expected - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

SOL_GEMM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

SOL_TOT - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

SOL_TRSM - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

SOLID - Static variable in class gov.nih.mipav.model.structures.VOI

Indicates that the VOI should be displayed as a solid and not just a boundary.

solidCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

solidity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

solidityDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

soliuc(double, int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

soliuc(DoubleDouble, int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

SOLNC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

solsimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation

solsimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solsreal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation

solsreal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP

SOLUN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

solution - Variable in class gov.nih.mipav.model.algorithms.NelderMead

SolutionInfo() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo

SolutionInfo() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo

solve(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

solve(JamaMatrix) - Method in class gov.nih.mipav.model.structures.jama.JamaMatrix

solve(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm

solve(Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI

Solve(double[], double[], double[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor

Solve(int, LIBSVM.QMatrix, double[], byte[], double[], double, double, double, LIBSVM.Solver.SolutionInfo, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU

Solve(int, LIBSVM.QMatrix, double[], byte[], double[], double, double, double, LIBSVM.Solver.SolutionInfo, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

Solve(int, QMatrix, double[], byte[], double[], double, double, double, Solver.SolutionInfo, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU

Solve(int, QMatrix, double[], byte[], double[], double, double, double, Solver.SolutionInfo, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

Solve(CeresSolver.GradientProblemSolverOptions, CeresSolver.GradientProblem, double[], CeresSolver.GradientProblemSolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ConjugateGradientsSolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseNormalCholeskySolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver

Solve(CeresSolver.LinearOperator, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TypedLinearSolver

Solve(CeresSolver.LinearOperator, Vector<Double>, CeresSolver.LinearSolverPerSolveOptions, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ConjugateGradientsSolver

Solve(CeresSolver.Program, CeresSolver.LinearSolver, double[], int, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CoordinateDescentMinimizer

Solve(CeresSolver.SolverOptions, CeresSolver.ProblemImpl, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

Solve(SparseMatrix, VectorF, int, VectorF, float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

Solve(SparseSymmetricMatrix, VectorD, int, VectorD, double, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix

Solve(SparseSymmetricMatrix, VectorD, int, VectorD, double, int, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix

Solve(SparseSymmetricMatrix, VectorF, VectorF, int, VectorF, float, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix

SOLVE - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

solve_c_svc(LIBSVM.svm_problem, LIBSVM.svm_parameter, double[], LIBSVM.Solver.SolutionInfo, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

solve_c_svc(svm_problem, svm_parameter, double[], Solver.SolutionInfo, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

solve_depressed_cubic(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_cubic(QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_cubic(QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_cubic(DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_poly(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_poly(int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_poly(int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_poly(int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_quadratic(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_quadratic(QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_quadratic(QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_quadratic(DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_quartic(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_quartic(QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_depressed_quartic(QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_depressed_quartic(DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_directly2D(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

solve_directly3D(double[], double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

solve_epsilon_svr(LIBSVM.svm_problem, LIBSVM.svm_parameter, double[], LIBSVM.Solver.SolutionInfo) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

solve_epsilon_svr(svm_problem, svm_parameter, double[], Solver.SolutionInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

solve_ez(LSQR.lsqr_solver_ez, double[], double, double[], int[], double[], int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR

solve_l1r_l2_svc(Problem, double[], double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

A coordinate descent algorithm for L1-regularized L2-loss support vector classification

solve_l1r_lr(Problem, double[], double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

A coordinate descent algorithm for L1-regularized logistic regression problems

solve_l2r_l1l2_svc(Problem, double[], double, double, double, SolverType) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

A coordinate descent algorithm for L1-loss and L2-loss SVM dual problems

solve_Mat_rm(SIFT3D.Mat_rm, SIFT3D.Mat_rm, double, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

solve_Mat_rm_ls(SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

solve_normalized_poly(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_normalized_poly(int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_normalized_poly(int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_normalized_poly(int, DoubleDouble[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_normalized_poly(int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_nu_svc(LIBSVM.svm_problem, LIBSVM.svm_parameter, double[], LIBSVM.Solver.SolutionInfo) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

solve_nu_svc(svm_problem, svm_parameter, double[], Solver.SolutionInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

solve_nu_svr(LIBSVM.svm_problem, LIBSVM.svm_parameter, double[], LIBSVM.Solver.SolutionInfo) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

solve_nu_svr(svm_problem, svm_parameter, double[], Solver.SolutionInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

solve_one_class(LIBSVM.svm_problem, LIBSVM.svm_parameter, double[], LIBSVM.Solver.SolutionInfo) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

solve_one_class(svm_problem, svm_parameter, double[], Solver.SolutionInfo) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

solve_poly(int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_poly(int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_real_poly(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

solve_real_poly(int, DoubleDouble[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_real_poly(int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

solve_sub_problem(double, int, double, int, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

solve_system(SIFT3D.Mat_rm, SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

solve_tril(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

solve_tril2(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

solve_triu(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

solve_triu2(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

SolveFixedDepthMatrix(int, int, SortedTreeNodes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

SolveFixedDepthMatrix(int, SortedTreeNodes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

SolveImpl(CeresSolver.BlockSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver

SolveImpl(CeresSolver.BlockSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.IterativeSchurComplementSolver

SolveImpl(CeresSolver.BlockSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver

SolveImpl(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseNormalCholeskySolver

SolveImpl(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver

SolveImpl(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver

SolveImpl(MatrixType, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TypedLinearSolver

SolveInitialized - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t

SolveInPlaceUsingCholesky(int, double[][], double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

SolveInPlaceUsingQR(int, int, double[][], int, double[], double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

solveLinearEquation(double[][], double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion

SolveP2(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP3(double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP4(double[], double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP4Bi(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP4De(double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP5(double[], double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

SolveP5_1(double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Poly

solver - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm

Solver - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Solver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Solver

Solver() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Solver

Solver() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

SOLVER_ABORT - gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType

SOLVER_CONTINUE - gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType

Solver_NU - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Solver_NU() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU

Solver_NU() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU

solver_summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

SOLVER_TERMINATE_SUCCESSFULLY - gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType

Solver.SolutionInfo - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

SolverCantMixEvaluationCallbackWithInnerIterations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveReducedLinearSystem(CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSchurComplementSolver

SolveReducedLinearSystem(CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurComplementSolver

SolverFixedCostForConstantProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverIterativeLinearSolverForDogleg() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverLinearSolverTypeNormalOperation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverLineSearchProblemHasNoParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverLineSearchProblemHasZeroResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverLineSearchProblemIsConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverMCSVM_CS - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm

Copyright (c) 2007-2014 The LIBLINEAR Project.

SolverMCSVM_CS(Problem, int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

SolverMCSVM_CS(Problem, int, double[], double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

SolverMCSVM_CS(Problem, int, double[], double, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

SolverOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

SolverOptionsDefaultLineSearchOptionsAreValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverOptionsDefaultTrustRegionOptionsAreValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverSummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

SolverTrustRegionProblemHasNoParameterBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverTrustRegionProblemHasZeroResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolverTrustRegionProblemIsConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveRTRWithSparseRHS(int, int[], int[], double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

solverType - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

solverType - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

SolverType - Enum in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm

Copyright (c) 2007-2014 The LIBLINEAR Project.

SolverType() - Constructor for enum gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType

SolverUpdateStateEveryIterationOption() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveSymmetric(SparseMatrix, VectorF, int, VectorF, float, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

solveSymmetricCG(int, float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

Conjugate gradient method for sparse, symmetric matrices.

SolveUpperTriangularInPlace(int, int[], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

SolveUpperTriangularTestRTRSolveWithSparseRHS() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveUpperTriangularTestSolveInPlace() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveUpperTriangularTestTransposeSolveInPlace() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

SolveUpperTriangularTransposeInPlace(int, int[], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

SolveUsingEigen(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseNormalCholeskySolver

SolveUsingEigen(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver

SolveUsingLAPACK(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseNormalCholeskySolver

SolveUsingLAPACK(CeresSolver.DenseSparseMatrix, double[], CeresSolver.LinearSolverPerSolveOptions, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver

SonyEncodedDataDirectoryBase() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyEncodedDataDirectoryBase

SonyTag9050bDescriptor(MetadataExtractor.SonyTag9050bDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDescriptor

SonyTag9050bDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

SonyType1MakernoteDescriptor(MetadataExtractor.SonyType1MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDescriptor

SonyType1MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

SonyType1MakernoteTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.SonyType1MakernoteTest

SonyType6MakernoteDescriptor(MetadataExtractor.SonyType6MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDescriptor

SonyType6MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory

SonyType6MakernoteTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.SonyType6MakernoteTest

sop_uid - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

778 32 characters Service Obj Clas Unique ID.

SOPInstanceUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UID

String representing the SOP Instance UID

SOPInstanceUID - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

Sopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexOptions

< covariance type for R (usually COV_IID).

Sopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions

SOR_EXTRAPOLATION_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

sor_iteration(double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double[], double[], int, int, int, int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

SOR iteration in one position

sor_iteration(double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

SOR iteration in one position

sor_iteration(double[], double[], double[], double[], double[], double[], double[], double, int, int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.HornSchunk

Function to compute the SOR iteration at a given position (SOR = Successive Over-Relaxation)

SOR_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

SOR_PARAMETER - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

sorh - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D

sort() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject

sort() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data

sort() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator

After the heap is initialized, it must be sorted.

sort(float[], int[], int) - Static method in class gov.nih.mipav.model.file.FileIO

Sorts an array of floats (using Arrays.sort), turns into array of ints used to sort images by A; thus, the final value of B[i] is for the ith image read in, put that image at location B[i] in the image buffer.

sort(int[], int[], int) - Static method in class gov.nih.mipav.model.file.FileIO

Sorts an array of ints (using insertion sort), turns into array of ints used to sort images by image number; thus, the final value of B[i] is for the ith image read in, put that image at location B[i] in the image buffer.

sort(ViewTableModel, int, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

Sort the tag column or name column of the table model.

sort(ViewTableModel, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Sorts the column of the table model.

sort(ViewTableModel, int, boolean, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

Sort the tag column or name column of the table model.

sort(ViewTableModel, int, boolean, boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF

Sort the tag column or name column of the table model.

sort(Object[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort

sort(Object[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort

sort(Object[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort

sort(Object[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort

Sort() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Sort(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Sorts the vector in either ascending (default) or descending order.

sort_by_features() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container

sort_heap_external(int, int[], int[], int[], int) - Method in class gov.nih.mipav.model.structures.Triangulation

SortableHeaderRenderer(TableCellRenderer) - Constructor for class gov.nih.mipav.model.structures.TableSorter.SortableHeaderRenderer

Creates a new SortableHeaderRenderer object.

sortAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator

Sort the full path tables for images and vois.

sortBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE

DOCUMENT ME!

sortBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

here for memory/speed concerns.

sortCEDImageVOIs(ModelImage, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Sort the CED image VOIs

sortCEDImageVOIs(ModelImage, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Sort the CED image VOIs

sortCrossingPoints(float[], int) - Static method in class gov.nih.mipav.model.structures.VOIBase

Sorts the edge crossing points in place.

sortCrossingPoints(int[], int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

Sorts the edge crossing points in place.

sortCrossingPoints(int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Sorts the edge crossing points in place.

sortCrossingPoints(int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Sorts the edge crossing points in place.

sortDtiDicomData(String, String, String, FileDicomTagTable, FileInfoDicom[], int[], int, int[]) - Method in class gov.nih.mipav.model.file.FileIO

sorted - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

SortedTreeNodes - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

SortedTreeNodes() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes

sorter - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

sortg(double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtility

DOCUMENT ME!

sortg(DoubleDouble[], int, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP

DOCUMENT ME!

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

Sort the testing image directory in accending order.

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

Sort the testing image directory in accending order.

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

sortImageTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

sortImageVectorString(Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

Sort image vector in ascending order.

sortImageVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Sorting image VOI

sortImageVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Sorting image VOI

sortImageVOIsInit(ModelImage, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Sort the original MR image's specified VOIs

sortImageVOIsInit(ModelImage, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Sort the original MR image's specified VOIs

sortingColumns - Variable in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

sortingStatusChanged() - Method in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

SortingTableModel - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

SortingTableModel() - Constructor for class gov.nih.mipav.model.structures.SortingTableModel

Creates a new SortingTableModel object.

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

sortKeyImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

sortKeyImage_1() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

sortKeyImage_2() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

sortKeyImage_3() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

sortKeyImage_4() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

sortKeyImage_5() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

sortKeyImage_Map() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

sortKeyImage_OrigImg() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

sortLeicaFiles(JDialogLoadLeica.LeicaSeries) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

DOCUMENT ME!

sortModelStructure - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

SVM model vector after sorted by name.

sortrows(int[], int[][]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

sortTagKeys(Hashtable<FileDicomKey, FileDicomTagInfo>) - Static method in class gov.nih.mipav.model.file.DicomDictionary

Sorts the list of tags and returns it as an array in order of FileDicomKeys.

sortTags(FileDicomKey[], Object[]) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

sortTagsList(Collection<FileDicomTag>) - Static method in class gov.nih.mipav.model.file.FileDicomTagTable

Sorts the list of tags and returns it as an array in order.

sortTagsList(Dictionary<FileDicomKey, FileDicomTag>) - Static method in class gov.nih.mipav.model.file.FileDicomTagTable

Sorts the list of tags and returns it as an array in order.

sortTriIndex(Point3i, Point3f[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Used when new triangles are added to the mesh, either when the mesh is triangulated along the smoothed geodesic curve, or when the mesh is cut. sortTriIndex sorts the triangle indices so that the triangle is always front-facing and that the normals are correct for rendering

sortTriIndex(Vector3f, VertexBuffer) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Used when new triangles are added to the mesh, either when the mesh is triangulated along the smoothed geodesic curve, or when the mesh is cut. sortTriIndex sorts the triangle indices so that the triangle is always front-facing and that the normals are correct for rendering

SortUtil - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

Quick and merge sort implementations that create no garbage, unlike Arrays.sort(int[]).

SortUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortUtil

SortVector(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

sortVOITable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

sortVOITable() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

sortVOIVectorString(Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

Sort VOI name vector in ascending order.

SOS - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

SOS - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

source - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

source - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ

DOCUMENT ME!

source - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ

DOCUMENT ME!

source - Variable in class gov.nih.mipav.model.structures.UpdateVOIEvent

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse

Event source

source - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning

DOCUMENT ME!

source - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse

DOCUMENT ME!

source() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

SOURCE - Static variable in class gov.nih.mipav.view.DICOMDisplayer

A source type message is the server from which the images are coming.

sourceBitPix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Source bits per pixel : 1,8,16,32,64,128 24(rgb).

sourceBitPix - Variable in class gov.nih.mipav.model.file.FileNIFTI

Source bits per pixel = sourceBitPix

SourceBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

sourceFile - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB

sourceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

sourceImage - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

sourceInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

FileInfoDicom for source image

sourceList - Variable in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection

List of available VOIs.

sourceMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sourceMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sourcePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

sourceRoot - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

DOCUMENT ME!

sourceRoot - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

DOCUMENT ME!

sourceTagsAL - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer

sourceTextF - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

sourceType - Variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

sourceType - Variable in class gov.nih.mipav.model.file.FileFits

DOCUMENT ME!

sourceType - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

Original unscaled source data type

sourceType - Variable in class gov.nih.mipav.model.file.FileNIFTI

Original unscaled source data type

sourceVoiModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

The tree of VOIs, composed of an image with children VOIs

sourceVoiModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

The tree of VOIs, composed of an image with children VOIs

sourceVoiTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

The graphical representation of voiModel

sourceVoiTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

The graphical representation of voiModel

sourceXdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceXdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

sourceXres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceXres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

sourceYdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceYdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

sourceYres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceYres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

sourceZdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceZdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

sourceZres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

sourceZres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

south - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

South - gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition

Sp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Lifo

SP(int) - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP

sp_coletree(int[], int[], int[], int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_dconvert(int, int, double[], int, int, int, double[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_dgemm(char, char, int, int, int, double, SuperLU.SuperMatrix, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_dgemv(char, double, SuperLU.SuperMatrix, double[], int, double, double[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_dtrsv(char, char, char, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_ienv(int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_ienv_test(int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_preorder(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_symetree(int[], int[], int[], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_zconvert(int, int, SuperLU.doublecomplex[], int, int, int, SuperLU.doublecomplex[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_zgemm(char, char, int, int, int, SuperLU.doublecomplex, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_zgemv(char, SuperLU.doublecomplex, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

sp_ztrsv(char, char, char, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.doublecomplex[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

spa() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

spa(int[], NonnegativeMatrixFactorization.info, Matrix, int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SPA - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

space - Variable in class gov.nih.mipav.model.file.FileNRRD

RAS, LAS, LPS, RAST, LAST, LPST, SCANNER_XYZ, SCANNER_XYZ_TIME, THREED_RIGHT_HANDED, THREED_LEFT_HANDED, THREED_RIGHT_HANDED_TIME, or THREED_LEFT_HANDED_TIME

space - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

DOCUMENT ME!

space - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

DOCUMENT ME!

spaceDirections - Variable in class gov.nih.mipav.model.file.FileNRRD

Second index of spaceDirections specifies row of matrix to set.

spaceField - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

spaceField - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

spaceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

spaceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

SpaceNavigatorController - Class in gov.nih.mipav.view.input.spacenav

Allows for controlling a SpaceNavigator, could also be generalized for any joystick-type device.

SpaceNavigatorController() - Constructor for class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

SpaceNavigatorEvent - Class in gov.nih.mipav.view.input.spacenav

Allows events to originate from GPURenderBase

SpaceNavigatorEvent(GPURenderBase) - Constructor for class gov.nih.mipav.view.input.spacenav.SpaceNavigatorEvent

SpaceNavigatorListener - Interface in gov.nih.mipav.view.input.spacenav

Interface for receiving space navigator events.

SpaceNavigatorPoller - Class in gov.nih.mipav.view.input.spacenav

Polls the space navigator.

SpaceNavigatorPoller() - Constructor for class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller

spaceNavMax - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

actual min and max values for the 3D mouse (the space navigator)

spaceNavMin - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

actual min and max values for the 3D mouse (the space navigator)

spaceOrigin - Variable in class gov.nih.mipav.model.file.FileNRRD

Used to set origin values.

spaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

spaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

spaceString - Variable in class gov.nih.mipav.model.file.FileInfoNRRD

Possible values are "right-anterior-superior", "left-anterior-superior", "left-posterior-superior", "right-anterior-superior-time", "left-anterior-superior-time", "left-posterior-superior-time", "scanner-xyz", "scanner-xyz-time", "3d-right-handed", "3d-left-handed", "3d-right-handed-time", "3d-left-handed-time"

spaceText - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Text field of the ray trace space size.

spaceUnits - Variable in class gov.nih.mipav.model.file.FileNIFTI

Bits 0, 1, and 2 of xyzt_units specify the units of pixdim[1..3], that is the spatial units of the nifti x, y, and z axes. 0 means "Spatial units are unknown", 1 means "Spatial units are meters", 2 means "Spatial units are millimeters", 3 means "Spatial units are micrometers".

spaceUnitsString - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

spacing - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake

SPACING_BETWEEN_SLICES - Static variable in class gov.nih.mipav.model.file.FileDicom

spacingBetweenSlices - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

spacings - Variable in class gov.nih.mipav.model.file.FileNRRD

Resolutions values for nrrd axes

SPAR - Static variable in class gov.nih.mipav.model.file.FileUtility

SPAR file format for use with PARREC images

spare_full - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

spare_row8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

spare_row9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

sparse_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions

sparse_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions

sparse_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

sparse_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

sparse_linear_algebra_library_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions

sparse_mu_v_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SPARSE_MU_V_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

sparse_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SPARSE_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SPARSE_NORMAL_CHOLESKY - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType

SPARSE_QR - gov.nih.mipav.model.algorithms.CeresSolver.CovarianceAlgorithmType

SPARSE_SCHUR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType

SparseEigenvalue - Class in gov.nih.mipav.model.structures.jama

These sparse symmetric eigenvalue and eigenvector routines are ported from the FORTRAN ARPACK package.

SparseEigenvalue() - Constructor for class gov.nih.mipav.model.structures.jama.SparseEigenvalue

Creates a new SparseEigenvalue object.

SparseLinearAlgebraLibraryType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType

SparseMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

SparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

SparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix

SparseMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

SparseMatrix(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

SparseMatrix(int, int) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.SparseMatrix

SparseMatrix(SparseMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

SparseMatrixPreconditionerWrapper(CeresSolver.SparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrixPreconditionerWrapper

SparseSymmetricMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

SparseSymmetricMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseSymmetricMatrix

SpaSize(int, int, float) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

SPATIAL_CORRELATION_COEFFICIENT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

spatialBandwidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

spatialBandwidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

SpatialBroxOpticalFlow - Class in gov.nih.mipav.model.algorithms

SpatialBroxOpticalFlow() - Constructor for class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

SpatialBroxOpticalFlow(ModelImage, ModelImage, ModelImage, ModelImage, double, double, int, double, double, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

spatialCorrelationCoefficient - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

spatialGaussianButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

spatialGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

spatialKernelType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

spatialKernelType - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

spatialScale - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

spatialText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

spatialUniformButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

special_case(double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit

special_nmf_cost - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

specificCharacterSet - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

specimen - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

specimen - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

specimenSpecies - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

specimenSpecies - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

specsum - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

SPECTRAL_ANGLE_MAPPER - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

spectral_conv - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear

spectral_convolve(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spectral_deconvolve(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spectral_radius_est(fMRIBlindDeconvolution.ConvAndLinear, int, int, double, boolean) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spectral_retro_convolve(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spectral_retro_deconvolve(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spectralScan - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

spectraNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

SPECTROSCOPY - Variable in class gov.nih.mipav.model.file.FileDicomBase

SPECTROSCOPY_DATA - Static variable in class gov.nih.mipav.model.file.FileDicom

Spectrum - Static variable in class gov.nih.mipav.model.structures.ModelLUT

SPECTRUM - Static variable in class gov.nih.mipav.model.structures.ModelLUT

Sets up the transfer function colors to be colours of .

spectrumNumber - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

spectStudyGeneral - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

spectStudyReconstructedData - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

specular - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight

DOCUMENT ME!

specular - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial

DOCUMENT ME!

SPECULAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

specularButton - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Specular color button for vertex material.

specularColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

DOCUMENT ME!

specularColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

DOCUMENT ME!

specularVector - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

speed - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

double scalar containing an estimate of the linear convergence factor.

speed - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

double scalar containing an estimate of the linear convergence factor.

speed(float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

Calculates the speed at some point q.

speedInt - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

speedLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

speedLabelTable - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

speedSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

speedThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

speedThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

speedThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

speedThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

speedupCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

speedUpGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

speedUpLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

speedUpLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

SpeedUpLevel() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel

spence(double) - Method in class gov.nih.mipav.model.algorithms.Cephes

SPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes

spg_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SPG_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

spgrData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

spgrData - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

spgrImageComboBoxAr - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

spgrImageIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

spgrImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

spgrNumFA - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

spgrPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

spgrRepTime - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

sphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Sphere showing where the user clicked in the surface.

SPHERE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

DOCUMENT ME!

SPHERE_RADIUS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Radius of the sphere control points of the widget in world coordinates.

sphereBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Default burning point array.

sphereBranch - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Branch group parent of the sphere.

sphereClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

sphereColorButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

sphereDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

kernel diameter.

sphereDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

kernel diameter.

sphereDiameter - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

sphereRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

spheres - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Burning point sphere.

SPHERES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

SPHERES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

sphereScale - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

sphereShowing - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Flag indicating if the sphere is currently showing.

sphereTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Transform group parent of the sphere.

spinAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Rotation row angle.

spinAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Rotation row angle.

spineLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

spineLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

spineLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

spineMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

spineMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

spineMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

spineMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

spineMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

spineMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

spinIcon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

spinLower - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

handling of intensity threshold.

spinnerDefaultValue - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Used to setup the paint spinner.

spinnerMax - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Used to setup the paint spinner.

spinnerMin - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Used to setup the paint spinner.

spinnerStep - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Used to setup the paint spinner.

spinTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Row transform.

spinTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Row transform.

spinUpper - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

splev - Class in gov.nih.mipav.model.algorithms

splev(double[], int, double[], int, double[], double[], int, int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.splev

spline - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

spline - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

spline - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

spline_lambda - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

spline_subsample - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

spline_type - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

spline_type - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

splineButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

splineControlPtsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

splineDegree - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

DOCUMENT ME!

splineModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

splineModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

splineOrder - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

splineOrder - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

splineOrder - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

splineOrder - Variable in class gov.nih.mipav.model.structures.BSplineKernelFunction

splineOrder - Variable in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction

splineRangeIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

SplineSmooth(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Bspline smoothing

SplineWavelets() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

split(VOIBase, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

SPLIT - Static variable in class gov.nih.mipav.util.DoubleDouble

The value to split a double-precision value on during multiplication

Split_crit() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.Split_crit

Split_mode() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.Split_mode

split_pnm - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters

split_select_varIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

split_select_varIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

split_select_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

split_select_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

split_select_weights_file - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

split_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

split_varIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

Split_vars() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.Split_vars

SPLIT_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Indicates the MIPAV cursor is in split VOI mode

splitClasses() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

SplitComplexFormat - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDataFormat

spliterator - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor

spliterator() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Spliterator over the pixels of this image.

spliterator(int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Creates a Spliterator over the pixels within the specified area.

spliteratorMinimumSplitSize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img

minimum number of elements this Img's Spliterators can be split to.

SPLITLINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

splitNode(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

splitNodeInternal(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

splitNodeInternal(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification

splitNodeInternal(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability

splitNodeInternal(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression

splitNodeInternal(int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival

splitOpt - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions

splitOpt - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

SPLITP - gov.nih.mipav.model.algorithms.libdt.Split_crit

splitPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

splitPaneCenter - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

splitPaneLower - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

splitPaneUpper - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

splitPNM - Variable in class gov.nih.mipav.model.file.FileJPEG2000

SPLITQ - gov.nih.mipav.model.algorithms.libdt.Split_crit

splitrule - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

splitrule - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

splitrule - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

SplitRule() - Constructor for enum gov.nih.mipav.model.algorithms.StochasticForests.SplitRule

splitString(Vector<String>, String, String) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

SplitTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

splitVOI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter

Splits the VOI

splitVOIs(boolean, boolean, VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

sPLT - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

SPM - Static variable in class gov.nih.mipav.model.file.FileUtility

SPM file format.

spm_hrf(double[], double[], double, double, double, boolean, double, double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

spmpar(int) - Method in class gov.nih.mipav.model.algorithms.CDFLIB

sposl(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

sposl(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

spotRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Spot light radio button.

spotRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Spot light radio button.

spp - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

spp - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

sproot - Class in gov.nih.mipav.model.algorithms

sproot() - Constructor for class gov.nih.mipav.model.algorithms.sproot

sproot(double[], int, double[], double[], int, int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.sproot

SQ - gov.nih.mipav.model.file.FileDicomTagInfo.VR

SQ(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

SQ(double) - Method in class gov.nih.mipav.model.algorithms.KDTree

sqdist(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.Fastfit

sqDistance(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

sqr() - Method in class gov.nih.mipav.util.DoubleDouble

Computes the square of this value.

sqr(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

Sqr() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Takes the power of two of each element.

Sqr() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Squares each element.

SQR(double) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

SQR = x^2.

SQR(double) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

SQR = x^2.

SQR(double) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

SQR = x^2.

SQR(double) - Static method in class gov.nih.mipav.view.ViewJFrameRegistration

SQR = x^2.

SQR(double) - Static method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

SQR = x^2.

sqrdc(double[][], int, int, double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

sqrdc(DoubleDouble[][], int, int, DoubleDouble[], int[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

sqrsl(double[][], int, int, double[], double[], double[], double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

sqrsl(DoubleDouble[][], int, int, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

sqrt() - Method in class gov.nih.mipav.util.DoubleDouble

Computes the positive square root of this value.

Sqrt() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Takes the square root of each element.

Sqrt() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Takes the square root of each element.

Sqrt(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor

SQRT_3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor

sqrt_nsites - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

sqrt_rho1_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector

sqrt10 - Variable in class gov.nih.mipav.model.algorithms.LsqFit

sqrt10 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

sqrt2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed

sqrt2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed

sqrt2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

sqrt2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

sqrt2 - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform

SQRT2 - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sqrt2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sqrt3 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

sqrt5 - Variable in class gov.nih.mipav.model.algorithms.LsqFit

sqrt5 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

sqrt6 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

sqrtc(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

Performs square root of complex argument.

sqrtc(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

sqrtc(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

Ported from Tohru Morita article Performs square root of complex argument.

sqrtem5 - Variable in class gov.nih.mipav.model.algorithms.LsqFit

sqrtem5 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

SQRTH - Static variable in class gov.nih.mipav.model.algorithms.Cephes

sqrtNum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sqrtw - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

sqrtXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

sqrtXY - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

sqrtXYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver

sqrtXYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver

sqteta_dotprd - Variable in class gov.nih.mipav.model.algorithms.NL2sol

sqteta_v2norm - Variable in class gov.nih.mipav.model.algorithms.NL2sol

SQTPI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

Square - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes

Square - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Square - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Square() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Square

SQUARE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

SQUARE - gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode

SQUARE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

DOCUMENT ME!

SQUARE - Static variable in class gov.nih.mipav.model.structures.VOIBase

SQUARE(double) - Method in class gov.nih.mipav.model.algorithms.NelderMead

SQUARE_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

square kernel.

SQUARE_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

square kernel (2D only).

SQUARE_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

square kernel (2D only).

SQUARE_ROOT - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

SQUARE_ROOT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

DOCUMENT ME!

squareButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

Buttons for selecting magnifying shape.

squareCellLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon

Square cell length.

SquareClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer

This class implements a 2D Square-shaped ClassficiationWidget.

SquareClassificationWidget(int, int, Vector2f, Vector2f, Texture, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

squareComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

SquaredColumnNorm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

SquaredColumnNorm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

SquaredColumnNorm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

SquaredColumnNorm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

SquaredColumnNorm(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

SquaredColumnNorm(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

squaredDiag() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

squaredDistance(Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

SquareDistance(Point3D, Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry

squaredNorm() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

SquaredNorm() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

squareEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

SquareLength(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry

SquareLength(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation

sr - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Reference to ViewJFrameSurfaceRenderer.

srand - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

SRATIONAL - gov.nih.mipav.model.file.FileSVS.Type

signed rational with two longs, 1st numerator

SRATIONAL - gov.nih.mipav.model.file.FileTiff.Type

signed rational with two longs, 1st numerator

SRATIONAL - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SRATIONAL - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

src - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

src_units - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D

srcArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

srcBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Source buffer number of slices.

srcBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Source buffer number of slices.

srcBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Source buffer number of rows.

srcBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Source buffer number of rows.

srcBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Source buffer number of columns.

srcBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Source buffer number of columns.

srcButton - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber

this is a ref to the source button so that the text on the button can be changed

srcBvalGradTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

srcBvalGradTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

srcByteArray - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Source byte array allocated ONCE used in reading from the stream.

srcDicomInfo - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices

srcDirs - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

DOCUMENT ME!

srcExtents - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Original extents array

srcFileInfos - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Original FileInfoBase array.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHessian

Image to convolve with hessian.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake

Source image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

src image, result image

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

src image

srcImage - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

srcImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

srcImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

srcImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt

target image

srcImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite

srcImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices

Source image

srcImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays

Source image RGB type image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB

Source image RGB type image.

srcImage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Image to subsample from.

srcImage - Variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.components.JPanelColorChannels

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.components.JPanelSigmas

the input image which will be processed

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

The image to attenuate.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

Use serialVersionUID for interoperability.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

src image *

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlices

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

The image that face anonymization will be performed on.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

The image that face anonymization will be performed on.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

The source image must be either an image with donor dye only taken with a donor fluorescent peak filter or an image with acceptor dye only taken with a acceptor fluorescent peak filter.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

The source image must be the image taken with the donor fluorescent peak filter.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

Use serialVersionUID for interoperability.

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

src image, result image

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

srcImage for keeping track of slices

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

srcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

srcImage - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Reference to imageA.

srcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

srcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

srcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

srcImage - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

srcImage1 - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

srcImage1 - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

srcImage1 - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

srcImage1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat

Source image 1.

srcImage1 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

srcImage1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

srcImage1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

srcImage1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

srcImage2 - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

srcImage2 - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

srcImage2 - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

srcImage2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat

Source image 2.

srcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

srcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

srcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

srcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

srcImageA - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

Source image A.

srcImageArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

srcImageB - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

second ModelImage for dual-deconvolution

srcImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat

Source gray scale image to be stored in the BLUE channel.

srcImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

Source image B.

srcImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages

srcImageB: image to match to srcImage

srcImageB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat

Source gray scale image to be stored in the BLUE channel.

srcImageG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat

Source gray scale image to be stored in the GREEN channel.

srcImageG - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat

Source gray scale image to be stored in the GREEN channel.

srcImageR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat

Source gray scale image to be stored in the RED channel.

srcImageR - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat

Source gray scale image to be stored in the RED channel.

srcImages - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping

srcImages - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

when performing bulk operations via Image Calculator (Bulk Images) dialog, this array is populated

srcImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

list of images to send to algorithm

srcImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

list of images to send to algorithm

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

table to display the src image names.

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D

table

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D

table

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D

table

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

table to display the src image names.

srcImagesTable - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

table to display the src image names.

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

srcImageTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

srcMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

SrcMaxX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Get the shape max x coordinate

SrcMaxY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Get the shape max x coordinate

srcMin - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

SrcMinX() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Get the shape min x coordinate

SrcMinY() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Get the shape min x coordinate

srcNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

srcNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

srcNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

srcPaintMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

srcPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

table model for the srcimages.

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D

table model

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D

table model

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D

table model

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

table model for the srcimages.

srcTableModel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

table model for the srcimages.

srcTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

table model for the srcimages.

srcThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji

Original image threshold

srcThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Original image threshold

srcToDet - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

58 Distance from source to detector.

srcToIso - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

62 Distance from source to iso.

srcValue - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber

src button text number

srcVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

The initial VOI to initialize the evolution process.

srcVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake

The initial VOI to initialize the evolution process.

srcVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

The initial VOI to initialize the evolution process.

srcVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake

The initial VOI to initialize the evolution process.

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

srcVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

src VOI used for thresholding ME!

srcVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

srcVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

srcVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

srcVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

srcVOITable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

srelpr - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

single relative precision.

srelpr - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

single relative precision.

sRGB - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

srgb2linear(double) - Method in class gov.nih.mipav.model.algorithms.BlindDeblur

srgmu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SRGMU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SRHSFUNC_RECVR - Variable in class gov.nih.mipav.model.algorithms.CVODES

srow_x - Variable in class gov.nih.mipav.model.file.FileNIFTI

1st row affine transform

srow_y - Variable in class gov.nih.mipav.model.file.FileNIFTI

2nd row affine transform

srow_z - Variable in class gov.nih.mipav.model.file.FileNIFTI

3rd row affine transform

Ss - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

Byte indicating which location to use as the predictor.

Ss - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

SS - gov.nih.mipav.model.file.FileDicomTagInfo.VR

ssa - Variable in class gov.nih.mipav.model.algorithms.Cephes

sScanLinePart() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart

ssfpImageIndex_phase0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

ssfpImageIndex_phase180 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

ssfpImageNames_phase0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

ssfpImageNames_phase180 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

SSFPq - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree

SSFPTRField - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree

SSHORT - gov.nih.mipav.model.file.FileSVS.Type

16 bit signed

SSHORT - gov.nih.mipav.model.file.FileTiff.Type

16 bit signed

SSHORT - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SSHORT - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

sSig - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig

ssim(boolean) - Method in class gov.nih.mipav.model.algorithms.ImageQuality

SSIM_WITH_AUTOMATIC_DOWNSAMPLING - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

ssize - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D

ssize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

sSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Record the current static clipping slice number.

sSliceInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Record the current static clipping slice number.

ST - gov.nih.mipav.model.file.FileDicomTagInfo.VR

st_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node

stable - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed

StableIndependentSetBreakTies() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

StableIndependentSetOrdering(CeresSolver.Graph<Vertex>, Vector<Vertex>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

stableness_score(double, double) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation

stableness_score(QuarticEquation.complex_t, QuarticEquation.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquation

stableness_score(QuarticEquationEP.complex_t, QuarticEquationEP.complex_t) - Static method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

stableness_score(DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP

stack - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

stack - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

stack - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Used to calculate the levelset contour.

stack(GaussianMixtureModelsIncompleteSamples.GMM[], double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

stack_end_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.stack_end_t

stack_fit(GaussianMixtureModelsIncompleteSamples.GMM[], double[][], double[][][], String, double, double, String, String, GaussianMixtureModelsIncompleteSamples.Background, int, double, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

StackElem() - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream.StackElem

stageCalibrated - Variable in class gov.nih.mipav.model.file.FileInfoZVI

stageLabel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

StageLabel(String, Float, Float, Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.StageLabel

Creates a new StageLabel object.

stagePositionX - Variable in class gov.nih.mipav.model.file.FileInfoZVI

stagePositionY - Variable in class gov.nih.mipav.model.file.FileInfoZVI

stageXPosition - Variable in class gov.nih.mipav.model.file.FileInfoCZI

stageYPosition - Variable in class gov.nih.mipav.model.file.FileInfoCZI

STAIRCASE - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

Staircase transfer function.

stampSecondary - Variable in class gov.nih.mipav.model.file.FileDicom

Whether MIPAV should be written to this dicom file as the secondary stamp *

stampSecondary - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

Whether to stamp DICOM files with the MIPAV secondary stamp

stampSecondaryCapture(FileInfoDicom) - Method in class gov.nih.mipav.model.file.FileDicom

Writing a file to disk likely indicates that it was changed in some way.

stampSecondaryCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

Check box for specifying whether DICOM files should be stamped with MIPAV information

standard - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing

standard - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

STANDARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

STANDARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

STANDARD - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Show standard progress bar with cancel.

standardButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

standardButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

standardCols - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

standardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

If true calculate glcm standard deviation glcm standard deviation = square root(glcm variance).

standardDeviation - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

If true calculate glcm standard deviation glcm standard deviation = square root(glcm variance).

standardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

standardDeviation - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

standardDeviation(float[], float) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Finds the standard deviation of the values in the input list (defined as: s = [(1/(N-1))*SUM (from 0 to N-1)[ (Xi - X)^2]]^(1/2)).

standardDeviationCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

standardDeviationCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

standardGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

standardizeExtensionFormat(String) - Static method in class gov.nih.mipav.model.file.FileTypeTable

Standardizes an file extension string to conform with how they should be stored in the file type table.

StandardKey(KeyEvent) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey

Creates new thread and sets up mouse event variables appropriately.

StandardMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse

Creates new thread and sets up mouse event variables appropriately.

StandardMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse

Creates new thread and sets up mouse event variables appropriately.

StandardMouse(MouseEvent) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse

Creates new thread and sets up mouse event variables appropriately.

standardOS - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Text field for the user inputed operating system.

standardRows - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

standardUrgency - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Text field for the user inputed urgency of the bug

standardVersion - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Text field for the user inputed mipav version.

STAPT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Point that was initially passed into function.

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Point that was initially passed into function.

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

Point that was initially passed into function.

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

Point that was initially passed into function.

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

start - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask

start - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Chunk

start - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

start - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

start - Variable in class gov.nih.mipav.model.algorithms.libdt.Range

start - Variable in class gov.nih.mipav.model.algorithms.NMSimplex

start - Variable in class gov.nih.mipav.model.algorithms.ODE

start - Variable in class gov.nih.mipav.model.algorithms.ODEEP

start - Variable in class gov.nih.mipav.model.file.FileGESigna4X

start - Variable in class gov.nih.mipav.model.file.FileGESigna5X

DOCUMENT ME!

start - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t

pointer to the start of the buffer

start - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t

start - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t

pointer to the start of the buffer

start - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

start - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Col

start - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.Colamd_Row

start - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial

start - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear.GroupClassesReturn

start() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream

start() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream

start() - Method in class gov.nih.mipav.view.ImageRegistryMonitor

Start the thread as a minimum priority thread.

start() - Method in class gov.nih.mipav.view.LineMeter

sets the animation/redraw thread up, then runs it.

start() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource

DOCUMENT ME!

start() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource

DOCUMENT ME!

start() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState

Reset parameters to start at the beginning of the path moving in the forward direction.

start() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState

Reset parameters to start at the beginning of the path moving in the forward direction.

start() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState

Reset parameters to start at the beginning of the path moving in the forward direction.

start() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

Start the thread as a minimum priority thread.

start() - Method in class gov.nih.mipav.view.ViewUserInterface.MemoryUsageUpdater

start(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

Checks to see if a thread is already running on this object, and if not starts it.

START_BLOCK_STATE - Static variable in class gov.nih.mipav.model.file.CBZip2InputStream

start_field - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

start_field - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

start_field - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

start_iMCU_row(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

start_input_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller

start_input_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_input_controller

start_input_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_INPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg

start_input_pass_coef(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_INPUT_PASS_COEF - Static variable in class gov.nih.mipav.model.file.libjpeg

start_level - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

start_level - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

start_of_file - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr

start_output_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller

start_output_pass(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_OUTPUT_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_idct_controller

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

start_pass - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample

START_PASS - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_1_quant(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_1_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_2_quant(libjpeg.jpeg_decompress_struct, boolean) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_2_QUANT - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_arith_decoder(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

start_pass_dcolor(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_DCOLOR - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_dpost(libjpeg.jpeg_decompress_struct, libjpeg.J_BUF_MODE) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_DPOST - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_huff_decoder(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_HUFF_DECODER - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_idct_controller(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

start_pass_main(libjpeg.jpeg_decompress_struct, libjpeg.J_BUF_MODE) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_MAIN - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_merged_upsample(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_MERGED_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pass_upsample(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

START_PASS_UPSAMPLE - Static variable in class gov.nih.mipav.model.file.libjpeg

start_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_packet_info_t

packet start position (including SOP marker if it exists)

start_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tp_index_t

start position

START_SLICE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for first slice to save from an image parameter.

START_TIME - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the parameter indicating the first time slice to save.

start_time_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger

start_time_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScopedExecutionTimer

start_time_in_secs_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

startAdjust - Variable in class gov.nih.mipav.model.file.FileGESigna5X

DOCUMENT ME!

startAdjust - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

startAngle - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

startAngle - Variable in class gov.nih.mipav.view.RubberbandEllipse

DOCUMENT ME!

startAnimator(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

startBlank - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

startBurn() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

When the burn button is clicked, invoked the start burn method to show the burnning process.

startBurn(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase

Show the the burning procedure.

startBurn(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Start burning.

startBurn(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView

Start burning.

startBurn(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView

Start burning.

startBurn(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView

Start burning.

startBurnPacking() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Start to try to choose an optimal ablation plan for the current target surface.

startButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Start button to auto snapshooting.

startCalendar - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

startCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

startDayBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

Parser calls this for the beginning of each element in the document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler

Parser calls this for each element in a document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler

Parser calls this for the beginning of each element in the document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler

Parser calls this for the beginning of each element in the document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler

Parser calls this for the beginning of each element in the document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler

Parser calls this for the beginning of each element in the document.

startElement(String, String, String, Attributes) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler

Parser calls this for each element in a document.

startElementEdge(Attributes) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

Called when the Edge start element is found.

startElementGraph(Attributes) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

Called when the Graph start element is found.

startElementLabel(Attributes) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

Called when the start of the Label element is found.

startElementNode(Attributes) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler

Called when the start of a Node Element is found.

startFirstImage - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

startHorizontalBedPosition - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

startIndex - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer

Points the start of data in the buffer.

startIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

startIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

startIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

startIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

starting_row - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller

StartingPolynomial - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

StartingPolynomial(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.StartingPolynomial

startInput - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

JTextfield for start slice of the computation.

startK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

startLoc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

122 - First scan location (L/S).

startLocation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Origin of the image.

startLocation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

startLocation - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh

DOCUMENT ME!

startLocation - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceExtractor

DOCUMENT ME!

startLocation - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

DOCUMENT ME!

startLocation - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM

DOCUMENT ME!

startLocation - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

image start location.

startLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor

Surface 3D location

startLocations - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

startMethod(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Checks to see if a thread is already running on this object.

startMonthBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

startOfFrame(InputStream, int) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

startOfFrame(InputStream, int) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

startOfImage() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

startOfImage() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

startOfScan(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

startOfScan(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

startPoint - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning

startPointTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Probe detection starting point transform group that represents the probe guide line starting point.

startPos - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

startPos - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

startPosition - Variable in class gov.nih.mipav.model.file.FileRaw

DOCUMENT ME!

startPt - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter

startPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

startPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

startPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

startPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

startPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

startPtTransVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Start point ( invisible ) coordinate vector in world coordinate system.

startQuote - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

startRAS - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

120 - 1 byte - RAS letter for first scan location (L/S).

startRecording() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Starts the recording of a new script (if one isn't already being recorded).

startRecording() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder

Starts the recording of a new script (if one isn't already being recorded).

startRecording() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

startRecording() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

startRecording() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

startScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

startSecondImage - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

startSectorArray - Variable in class gov.nih.mipav.model.file.FileZVI

startSlice - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator

startSlice - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

The first slice in the intensity projection calculation:

startSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

startSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Value of the start slice for the calculation (X,Y,Z).

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.Range

startSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Current segmentation processing slice range, which is between silce 3 and 20.

startStopVOIAnimation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

startsWithJpegExifPreamble(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifReader

Indicates whether 'bytes' starts with 'JpegSegmentPreamble'.

StartTemperature() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA

get start tempature.

startTime - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase

Start time (in milliseconds) to be used to compute elapsed time.

startTime - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

startTime - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

startTime - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

startTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

= localTime2 - localTime.

startTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

= localTime2 - localTime.

startTrain(ArrayList<Double[]>) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

startupCommand - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

The action command to send to the volume renderer after we start it (can be used to open a tab).

startupFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

Contains all java properties of the MIPAV app (used at least when loading!)

startVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

startVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

startVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

startVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

startVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

startVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

startX - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator

startX - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator

startX - Variable in class gov.nih.mipav.model.file.FileGESigna4X

startX - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

startX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line

startX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line

startX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line

startX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line

startX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line

startY - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator

startY - Variable in class gov.nih.mipav.model.file.FileGESigna4X

startY - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

startY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.Line

startY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.Line

startY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.Line

startY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.Line

startY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.Line

startYearBox - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

startZ - Variable in class gov.nih.mipav.model.file.FileGESigna4X

startZ - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

STAT_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Statistics Tab.

statAux - Variable in class gov.nih.mipav.model.file.FileAfni

# orts are nuisance parameters whose number is >= 1.

statAux - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

statCode - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

statData - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

statData - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

statData - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

statistic data corresponding to marked VOI vector.

state - Variable in class gov.nih.mipav.model.file.FileInfoCZI

state - Variable in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream

state - Variable in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream

state - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

State being recorded.

state - Variable in class gov.nih.mipav.view.renderer.MouseEventVector

State being recorded.

state() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

State(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State

state_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

state_offset() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

state_offset_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

state_start - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

state_start() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

state_updating_callback - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreprocessedProblem

stateChanged(Vector) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

.

stateChanged(Vector) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Updates the fileinfo with changes made within the JDialogs.

stateChanged(Vector) - Method in class gov.nih.mipav.model.file.FileInfoMGH

.

stateChanged(Vector) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

.

stateChanged(Vector) - Method in class gov.nih.mipav.model.file.FileInfoSPM

.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

state changed

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir

Updates the image based on thumbnails

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox

sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Handle events from the intensity bounds sliders.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

state change listener for the sliders.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrim

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.JPanelHistogram

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

ChangeListener for opacity slider changes.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Slider move event handler.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

ChangeListener for opacity slider changes.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

stateChanged.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

Called when the slider values have changed.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The override necessary to be a ChangeListener for a JSlider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Listens for changes in the velocity slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

Called when the slider values have changed.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Sets where image is in scene based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

State change event, invokded by the sliders moves.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Switch between slices control button and surface render button of the surface toolbar.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Resets the buttons depending on which tab was selected.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

state changed

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Called when the slider values have changed.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Slider move event handler.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Sets how the image plane should be displayed depending on value of slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Does nothing.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewControlsImage

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

ChangeListener************************************************************************* /** Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

ChangeListener************************************************************************* /** Sets values based on knob along slider

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Resets the buttons depending on which tab was selected.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory

Calls various methods based on the changes in the memory panel.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessage

Watches for tab index changes.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Sets values based on knob along time slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Sets values based on knob along time slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages

Calls various methods based on the changes in the memory panel.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

sets values based on knob along slider and catches the tabbed pane switching events.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Sets values based on knob along time slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Sets values based on knob along slider.

stateChanged(ChangeEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

states - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dec_memory_marker_handler_t

value of the state when the marker can appear

stateTransitionOK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

stateTransitionOK - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie

DOCUMENT ME!

stateTransitionOK - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker

DOCUMENT ME!

StateUpdatingCallback(CeresSolver.Program, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.StateUpdatingCallback

stateVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Vector to record state changes.

stateVector - Variable in class gov.nih.mipav.view.renderer.MouseEventVector

Vector to record state changes.

StateVectorToParameterBlocks(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program

StateVectorToParameterBlocks(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Program

StatFree(SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

static_mem - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm

StaticArgument(String, String, String...) - Constructor for enum gov.nih.mipav.view.Argument.StaticArgument

StaticGrid - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

StaticGrid() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid

staticLightBehaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Static light hehavior branch group.

staticLightBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The branch group that holds the static light bulb.

staticLightBulb - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The structure for the static light bulb.

staticLightTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The transform group that holds the static light branch group.

staticLightTranslate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Static light translate behavior.

staticLightZoom - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Static light zoom behavior.

staticRef - Static variable in class gov.nih.mipav.plugins.ManifestFile

staticStudyGeneral - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

StatInit(SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

Station - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

statisticDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

strings to test for when checking on statistics to calculate.

statistics - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm

< Stopping threshold.

statistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ExecutionSummary

Statistics - Class in gov.nih.mipav.model.algorithms

Statistics() - Constructor for class gov.nih.mipav.model.algorithms.Statistics

Statistics(int, double, double, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Statistics

Statistics(ModelSurfaceTopology) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Statistics

The constructor and only member function for the class.

Statistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Evaluator

Statistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemEvaluator

Statistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver

Statistics() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TypedLinearSolver

statistics_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ExecutionSummary

StatisticsOptionsActionListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener

StatisticsTable - Class in gov.nih.mipav.model.algorithms

StatisticsTable() - Constructor for class gov.nih.mipav.model.algorithms.StatisticsTable

statisticType - Variable in class gov.nih.mipav.model.algorithms.Statistics

StatPrint(SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

stats - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt

STATS1(double[], int, double[], double[], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

statsList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

statsToCalculate - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

MIPAV VOI properties parameters.

status - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

status - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

status - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

status - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

status - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics

STATUS - Static variable in class gov.nih.mipav.view.DICOMDisplayer

A status type message is "Sending query", "Moving images", etc.

STATUS_CANCELLED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_ECHO_SUCCESS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_ERRORFIRST - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_ERRORLAST - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_FIND_OBJECTNOTFOUND - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_FIND_PENDING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_FIND_PENDINGWARNING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_FIND_SUCCESS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_FIND_SUCCESSNORESULTS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_INTERVAL - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

STATUS_MOVE_CANCELLED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_NOCONTACTDEST - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_NODESTINATION - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_NULLDESTINATION - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_OBJECTNOTFOUND - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_PENDING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_SUCCESS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_UNKNOWNDESTINATION - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_MOVE_WARNING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_OK - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_PENDING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_STORE_FAILED - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

STATUS_STORE_SUCCESS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

status_variable_name - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

status_varID - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

status_varID - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival

STATUS_WARNING - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

statusMessage(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2

statusMessage(int) - Method in class gov.nih.mipav.model.algorithms.Lmmin

statusMessage(int) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

statusMessageNL2sol(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2

statusMessageNL2sol(int, int) - Method in class gov.nih.mipav.model.algorithms.NL2sol

statusPanel - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

statusStrings - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Strings describing the various recorder statuses.

statusStrings - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder

Strings describing the various recorder statuses.

std - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

std(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

Std() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the standard diviation of the matrix.

Std() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the standard deviation the vector.

STD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

STD - Static variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

STD_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Stardard mode of the camera auto snapshooting.

STD_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Stardard viewing mode.

stda - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP

stdb - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP

stdBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Standard behavior reference.

stdButton - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Auto snapshot button.

stdButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Standard behavior button.

STDButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

StdCol(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the standard deviation of each column into a vector.

stddev - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

stdDev - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

stdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Standard deviation used for the Gaussians.

stdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

stdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

stdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

standard deviations in VOI

STDDEV - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator

std dev

stdDevB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

stdDevB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

standard deviations in VOI

stdDevCurvature - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

stdDevCurvatureDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

stdDevG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

stdDevG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

standard deviations in VOI

stdDeviation - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

stdDeviationB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

stdDeviationG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

stdDeviationR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

stdDevLimit - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

only filter pixels with a value further than stdDevLimit from the mean.

stdDevR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

stdDevR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

standard deviations in VOI

stdDevTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

stdDevTextFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

stdDevTextFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

stdDevTextFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

stderiv(double[][], double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

stderivEP(DoubleDouble[][], DoubleDouble[][], DoubleDouble[], DoubleDouble[], int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stdL - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP

stdOld - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

stdSystemErr - Static variable in class gov.nih.mipav.view.LogStdStreams

DOCUMENT ME!

stdSystemOut - Static variable in class gov.nih.mipav.view.LogStdStreams

DOCUMENT ME!

stdText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

User message explain how the mouse moves in stardard mode.

stdtr(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

STDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes

stdtri(int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

STDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes

stdv - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

stdv - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

STEEPEST_DESCENT - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType

SteepestDescent() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SteepestDescent

steering() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

Compute steering matrices

STEERING_KERNEL_SECOND_ORDER_L1_NORM - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

steering2L1Norm - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

steeringStepSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

steeringStepSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

step - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

step - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceOctaveGeometry

< Height (number of pixels)

step - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec

step - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat

step - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchOptions

< patch size (x, y, z).

step - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

step - Variable in class gov.nih.mipav.model.file.FileMincHDF

MINC resolution (can be negative)

step - Variable in class gov.nih.mipav.model.file.FileMincVarElem

in zspace, step == slice gap, not necessarily slice thickness

step(double[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.ODE

step(DoubleDouble[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.ODEEP

step_addsub(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

step_addsub4(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

step_addsub8(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

step_c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

component step used to localize the packet in the include vector

step_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

step_evaluator_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

step_is_nonmonotonic - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

step_is_successful - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

step_is_valid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

step_l - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

layer step used to localize the packet in the include vector

step_norm - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

step_p - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

precinct step used to localize the packet in the include vector

step_r - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

resolution step used to localize the packet in the include vector

step_rotate(double[], int) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

step_rotate8(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

step_size - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchMinimizer.State

step_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

STEP_SIZE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

step_solver_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

StepAccepted(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

StepAccepted(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy

StepAccepted(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy

StepAccepted(double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator

stepb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

stepb - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

stepButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Next step button.

stepButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Next step button.

stepButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Next step button.

stepDecreaseButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

DOCUMENT ME!

stepIncrButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

DOCUMENT ME!

StepIsInvalid() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

StepIsInvalid() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy

StepIsInvalid() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy

StepQuality(double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator

StepRejected(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

StepRejected(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LevenbergMarquardtStrategy

StepRejected(double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy

stepReordered - Variable in class gov.nih.mipav.model.file.FileMincHDF

stepsize - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t

stepsize_ratio - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

stepSizeFile - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

stepsizeH - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

stepsizes - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t

stepsizes used for quantization

stepsizes_expn - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t

stepsizes used for quantization

stepsizes_mant - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t

stepsizes used for quantization

stepsizeW - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

stepText - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast

Text field of the ray trace step size.

stepText - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp

Text field of the ray trace step size.

stepuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

stepuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

stepxy - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

stepxy2 - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

stepz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

stepz2 - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

StereoType - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

Stern - Static variable in class gov.nih.mipav.model.structures.ModelLUT

STEST(int, double[], double[], double[], double, int, int, int, int, boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

STEST1(double, double, double[], double, int, int, int, int, boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

stevensBeta - Variable in class gov.nih.mipav.view.ColorWheel

Stevens Beta

stevensBeta - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

steven's beta *

stevensBeta - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

steven's beta *

stevensBeta - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage

Stevens Beta *

stevensBetaPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

stevensBetaPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

stevensBetaSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

various sliders in dialog *

stevensBetaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

various sliders in dialog *

stevensBetaTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

textfields *

stevensBetaTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

textfields *

STICKS - Static variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

stiffness - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Allows for variable motion of the mesh in the surface normal direction, default value of .15

stiffness - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

stiffness.

stiffnessBET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Parameter for brain extraction by default set to .15

stiffnessBET - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

Controls the stiffness of the brain approximation mesh.

stiffnessField - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

The text field corresponding to stiffnessBET.

stiffnessText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Text field for getting stiffness for smoothing.

stiffnessTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Field for specifing stiffness of the mesh.

stinvmap(double[][], double[][], double[], double[][], double[], double[][], double[][], boolean, boolean, double, int) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

STIR - Static variable in class gov.nih.mipav.model.algorithms.Cephes

stirf(double) - Method in class gov.nih.mipav.model.algorithms.Cephes

STIRF - Static variable in class gov.nih.mipav.model.algorithms.Cephes

STK - Static variable in class gov.nih.mipav.model.file.FileUtility

MetaMorph Stack (STK) file type. extension: .stk

stmap(double[][], double[][], double[][], double[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

stmap(double[][], double[][], double[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

StochasticForests - Class in gov.nih.mipav.model.algorithms

StochasticForests() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests

StochasticForests(StochasticForests.TreeType, boolean, boolean, String, StochasticForests.MemoryMode, String, int, String, int, long, int, String, StochasticForests.ImportanceMode, int, String, Vector<String>, String, boolean, Vector<String>, boolean, StochasticForests.SplitRule, String, boolean, double, double, double, boolean, StochasticForests.PredictionType, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests

StochasticForests.Data - Class in gov.nih.mipav.model.algorithms

StochasticForests.DataChar - Class in gov.nih.mipav.model.algorithms

StochasticForests.DataDouble - Class in gov.nih.mipav.model.algorithms

StochasticForests.DataFloat - Class in gov.nih.mipav.model.algorithms

StochasticForests.DataSparse - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest.computeTreePermutationImportanceInThread - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest.growTreesInThread - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest.predictInternalInThread - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest.predictTreesInThread - Class in gov.nih.mipav.model.algorithms

StochasticForests.Forest.showProgress - Class in gov.nih.mipav.model.algorithms

StochasticForests.ForestClassification - Class in gov.nih.mipav.model.algorithms

StochasticForests.ForestProbability - Class in gov.nih.mipav.model.algorithms

StochasticForests.ForestRegression - Class in gov.nih.mipav.model.algorithms

StochasticForests.ForestSurvival - Class in gov.nih.mipav.model.algorithms

StochasticForests.ImportanceMode - Enum in gov.nih.mipav.model.algorithms

StochasticForests.indexValueComparator - Class in gov.nih.mipav.model.algorithms

StochasticForests.indexValueDescendingComparator - Class in gov.nih.mipav.model.algorithms

StochasticForests.indexValueItem - Class in gov.nih.mipav.model.algorithms

StochasticForests.MemoryMode - Enum in gov.nih.mipav.model.algorithms

StochasticForests.PredictionType - Enum in gov.nih.mipav.model.algorithms

StochasticForests.SparseMatrix - Class in gov.nih.mipav.model.algorithms

StochasticForests.SplitRule - Enum in gov.nih.mipav.model.algorithms

StochasticForests.Tree - Class in gov.nih.mipav.model.algorithms

StochasticForests.TreeClassification - Class in gov.nih.mipav.model.algorithms

StochasticForests.TreeProbability - Class in gov.nih.mipav.model.algorithms

StochasticForests.TreeRegression - Class in gov.nih.mipav.model.algorithms

StochasticForests.TreeSurvival - Class in gov.nih.mipav.model.algorithms

StochasticForests.TreeType - Enum in gov.nih.mipav.model.algorithms

StochasticForests.ValuePair<K,V> - Class in gov.nih.mipav.model.algorithms

STONITS - Static variable in class gov.nih.mipav.model.file.FileSVS

Sample value to Nits, where Nits is the photometric unit for luminance, also written candelas/meter**2.

STONITS - Static variable in class gov.nih.mipav.model.file.FileTiff

Sample value to Nits, where Nits is the photometric unit for luminance, also written candelas/meter**2.

stop - Static variable in class gov.nih.mipav.model.algorithms.Cephes

stop - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

containing only 5 msec. sleep commands.

stop - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

containing only 5 msec. sleep commands.

stop() - Method in class gov.nih.mipav.view.ImageRegistryMonitor

kill the thread.

stop() - Method in class gov.nih.mipav.view.LineMeter

shuts the animation thread off.

stop() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource

DOCUMENT ME!

stop() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource

DOCUMENT ME!

stop() - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

kill the thread.

stop() - Method in class gov.nih.mipav.view.ViewUserInterface.MemoryUsageUpdater

STOP_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Recorder/Player is stopped.

STOP_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Recorder/Player is stopped.

STOP_MODE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Recorder/Player is stopped.

stop_opt() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.stop_opt

stop_rule - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

stopButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

stops the thread from continuing its processing. on same panel as OK and Cancel.

stopButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Stop button.

stopButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Stop button.

stopButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Stop button.

stopButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

stopButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

stopCellEditing() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor

stopInput - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

JTextfield for end slice of the computation.

STOPPED - Static variable in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Status indicating that the script recorder is currently stopped (either never started, or recording is over).

STOPPED - Static variable in class gov.nih.mipav.model.scripting.ScriptRecorder

Status indicating that the script recorder is currently stopped (either never started, or recording is over).

stopProcess() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

stopping a thread prematurely is a co-operative process where the Thread checks for a stop-flag periodically, and stops itself by coming to the end of its run() method early.

stopRecording() - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Stops script recording.

stopRecording() - Method in class gov.nih.mipav.model.scripting.ScriptRecorder

Stops script recording.

stopRecording() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

stopRecording() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

stopScale - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

stopSlice - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

The last slice in the intensity projection calculation:

stopThreadRequest - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

DOCUMENT ME!

stopTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

= localTime2 - localTime.

stopTime - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

= localTime2 - localTime.

stopx(int[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol

storage - Variable in class gov.nih.mipav.model.file.FileSiemensText

storage_type() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

storage_type_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

storageModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

storageProperty - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

A semicolon delimited list of the storage properties to use for this receiver

storageTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

StorageType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver2.StorageType

store(double) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric

This function forces its argument x to be stored in a memory location, thus providing a means of determining floating point number characteristics (such as the machine precision) when it is necessary to avoid computation in high precision registers.

store_nmf_info(Matrix, Matrix, Matrix, Matrix, NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.info, int, int, long, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

store_sol - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

storeColorOptions(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores the values of color channel processing options in the parameter table.

storeColorOptions(JPanelColorChannels) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores the values from the color channel panel in the parameter table.

storedBlockCRC - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

storedCombinedCRC - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

storedMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

storedMatrixBox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

StoreDN - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

storeImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

storeImage - creates a BufferedImage from the ModelImage data where the BufferedImage's size is the next-largest power of two from the ModelImage size.

storeImage(ModelImage, String) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores an input image in the list of parameters for the algorithm.

storeImage(ModelImage, String) - Method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters

Stores an input image in the list of parameters for the algorithm.

storeImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder

Convenience method used to store the name of an image in the image table being recorded/used in the current script.

storeImage(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder

Convenience method used to store the name of an image in the image table being recorded/used in the current script.

storeImage(String) - Method in class gov.nih.mipav.model.scripting.ScriptRunner

Convenience method used to store the name of an image in the image table being used by the current script.

storeImageInRecorder(ModelImage) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Store an image in the script recorder image variable table.

storeImageInRecorder(ModelImage) - Method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters

Store an image in the script recorder image variable table.

storeImageInRecorder(ModelImage, boolean) - Static method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase

Store an image in the script recorder image variable table.

storeImageInRunner(ModelImage) - Static method in class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase

Store an image in the script runner image variable table.

storeImageInRunner(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Store an image in the script runner image variable table.

storeImageName(String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable

Stores a new image name in the variable table, giving it the next available image placeholder variable name.

storeImageVariable(String, String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable

Associates an image (through its name) with an image placholder variable.

storeInputImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores an input image in the list of parameters for the algorithm.

storeInputImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters

Stores an input image in the list of parameters for the algorithm.

storeLimitValues() - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

Tries to store the values held in the text areas to temporary storage.

StoreNC - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

StoreNCP - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

StoreNR - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

storeNumIterations(int) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

DOCUMENT ME!

storeNumIterations(int) - Method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters

DOCUMENT ME!

storeOutputImageParams(ModelImage, boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores information about the output of images for this algorithm in the parameter table.

storeOutputImageParams(ModelImage, boolean) - Method in class gov.nih.mipav.view.dialogs.DataProvenanceParameters

Stores information about the output of images for this algorithm in the parameter table.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator

store params

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

Stores all the keys that were selected, but in string form so that it is easier to pull up later (although it is not a pretty sight to see in the recorder)

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogClose

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D

store params

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D

store params

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

store params...for scripting

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogErode

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

store parameters from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMask

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMean

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMode

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

store params

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI

Used in turning the plugin into a script

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

store params from gui

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

Store the parameters from the dialog to record the execution of this algorithm.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

Record the parameters just used to run this algorithm in a script.

storeParamsFromGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

storeParamsFromGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

storeParamsFromGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

storeParamsFromGUI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

Record the parameters just used to run this algorithm in a script.

storeProcess3DAs25D(boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

storeProcessingOptions(boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores options for how an algorithm should process images in the parameter table.

storeProcessSeparable(boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores options for an algorithm using a kernel that can process dimensions separately.

storeProcessWholeImage(boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores whether the whole image or just VOI regions should be processed in the parameter table.

StoreSC - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

storeSigmas(float[], boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores an algorithm's sigmas in the parameter table.

storeSigmas(JPanelSigmas) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores an algorithm's sigmas in the parameter table.

StoreState() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

storeTabbedPaneIndex - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Previoius tab index recorder.

storeToDefaults() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Stores the current light box display properties.

storeVariable(String, String) - Method in class gov.nih.mipav.model.scripting.VariableTable

Stores a variable name and its value in the variable table.

storeWaterShed(float[], boolean) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Stores an algorithm's sigmas in the parameter table.

stparam(double[][], double[], double[][], double[][], double[], int[], double[][], double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stpfun(double[], int, int, double[], double[][], int[], int[], boolean[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun

stpfun2(double[], int, int[], double[], boolean, int, double[], double[][], int[], int[], boolean[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2

stpfun3(boolean, double[], double[], boolean, double[][], Vector<Double>, double[], int, int, int, double, double, double, double, int, int, int, double[], double[][], int[], int[], boolean[], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3

stpfunEP(DoubleDouble[], int, int, DoubleDouble[], DoubleDouble[][], int[], int[], boolean[], DoubleDouble[][]) - Constructor for class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP

stplot(double[][], double[], double[][], double[], double[], double[], int, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stpmul - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

stquad(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

stquadEP(DoubleDouble[][], DoubleDouble[][], int[], DoubleDouble[][], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stquadh(double[][], double[][], int[], double[][], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

stquadhEP(DoubleDouble[][], DoubleDouble[][], int[], DoubleDouble[][], DoubleDouble[], DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

str - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

str - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit

str - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

str - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

str - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

str - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

str - Variable in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength

str - Variable in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType

str - Variable in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

str - Variable in enum gov.nih.mipav.view.Preferences.ComplexDisplay

The format of complex display

str - Variable in enum gov.nih.mipav.view.Preferences.DefaultDisplay

The format of default display

str - Variable in enum gov.nih.mipav.view.Preferences.InterpolateDisplay

The format of complex display

str - Variable in enum gov.nih.mipav.view.ViewJSlider.SliderType

straightenedAnnotations - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

straightenedLattice - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

straightenFrame(ModelImage, int, int[], Vector3f[], Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

straightenLineVOI(Vector3f, VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Modifies kPos to form an angle with its origin point that is a multiple of 15 degrees.

straightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

strain() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

strain() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

strain() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

strain() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

strain() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

strain1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

strain1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

strain1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

strain1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

strain1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

stRange - Variable in class gov.nih.mipav.model.structures.ModelHistogram

DOCUMENT ME!

stRange - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

DOCUMENT ME!

stRange - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

stRange1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType

The starting range value of the input image.

stRange2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType

The starting range value of the output image.

strategy_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

strConfEstim(float[], float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

stream() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a sequential Stream of pixels of this image.

stream(boolean) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Stream of pixels of this image.

stream(boolean, int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Pixel Stream for the specified area of this Img.
This Img's ContourPlot.ImgBase.spliterator(int,int,int,int) is used to create the Stream.

stream(int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Pixel Stream for the specified area of this Img.
This Img's ContourPlot.ImgBase.spliterator(int,int,int,int) is used to create the Stream.

stream(ContourPlot.PixelConvertingSpliterator.PixelConverter<? super P, T>, boolean) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Stream of the specified ContourPlot.PixelConvertingSpliterator.PixelConverter's element type over the pixels of this image.

stream(ContourPlot.PixelConvertingSpliterator.PixelConverter<? super P, T>, boolean, int, int, int, int) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Stream of the specified ContourPlot.PixelConvertingSpliterator.PixelConverter's element type over the pixels of this image within the specified area.

stream(Spliterator<Px>, boolean) - Static method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns a Stream<Pixel> for the specified Spliterator<Pixel>.

streamEnd - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

StreamReader(InputStream) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

StreamReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.StreamReaderTest

streams - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

streams - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageDataSource

DOCUMENT ME!

streams - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.ImageDataSource

DOCUMENT ME!

StreamUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.StreamUtil

strength(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

stretch(Point) - Method in class gov.nih.mipav.view.Rubberband

Stretch the rubberband to this point.

stretchedPt - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

stride - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection

strides - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt

strides - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo

string - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

string() - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

string() - Method in class gov.nih.mipav.model.algorithms.LSCM.Face

string() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

string() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

A character string that may be possibly have further format specifications is stored in the tag's value

STRING - Static variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

STRING - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

STRING_ATTRIBUTE - Static variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

stringBvalueArray - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

par/rec Bvalues

stringGradientArray - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

par/rec gradients

stringOfChar(char, int) - Static method in class gov.nih.mipav.util.DoubleDouble

Creates a string of a given length containing the given character

StringOutput() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

stringOverride - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

String used to override the slice number in the lower left corner.

strings - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

stringTable - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder

DOCUMENT ME!

StringType(String, FileDicomTagInfo.VR...) - Constructor for enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType

StringUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.StringUtil

StringUtilTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.StringUtilTest

StringValue(byte[], Charset) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.StringValue

StringVecComparator() - Constructor for class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.StringVecComparator

STRIP_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

STRIP_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

STRIP_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

STRIP_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

strip_height - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller

STRIP_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

STRIP_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

STRIP_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

STRIP_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

stripAccuracy(SchwarzChristoffelMapping.scmap) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stripCounts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

STRIPED - Static variable in class gov.nih.mipav.model.structures.ModelLUT

Sets up the transfer function colors to be striped.

stripeval(SchwarzChristoffelMapping.scmap, double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stripevalinv(SchwarzChristoffelMapping.scmap, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stripExtension(String) - Static method in class gov.nih.mipav.model.file.FileUtility

Helper method to strip the image name of the extension, so when we save we don't have double extensions (like genormcor.img.tif).

stripL - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap

stripmap(SchwarzChristoffelMapping.polygon, int[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

stripplot(SchwarzChristoffelMapping.scmap, double[], double[], int, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

strokeLength - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

strokePattern - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel

strokePattern - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

strokePattern2dashPattern(short, float) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer

strsl(int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

strsl(int[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

strtok2(String, String) - Method in class gov.nih.mipav.model.algorithms.libdt

struckOkayButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor

DOCUMENT ME!

struckOkayButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

DOCUMENT ME!

struckOkayButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

DOCUMENT ME!

STRUCT - Static variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

STRUCT_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer

structOptPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

STRUCTURAL_SIMILARITY_INDEX - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

structuralSimilarityIndex - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

structureSize - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

structureType - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

structureTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

structureY - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

structureY - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

structureY - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

structureY - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

struve(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

STRUVE - Static variable in class gov.nih.mipav.model.algorithms.Cephes

stSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

stSlice - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

Starting slice to evolve contour.

STUDENTS_T_DISTRIBUTION_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics

STUDENTS_T_DISTRIBUTION_PROBABILITY_DENSITY_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics

STUDENTS_T_INVERSE_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics

STUDY_LEVEL - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

studyAccNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyAge - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyDate - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyDate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyDate - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

studyDate - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

studyDate - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyDescrip - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyDescription - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyDescription - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyDiag - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

studyHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyHeaderBlocks - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyHeaderID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyHeaderID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyHeaderRevisionNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyHist - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyID - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

studyID - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyInstanceUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UID

String representing the Study Instance UID

studyInstanceUID - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

studyName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

This is the dir name of the study

studyName - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

studyName - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

study name string

studyNOText - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

studyNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyOcc - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyPath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

This is the full path of the study

studyPath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

study path

studyPhyRead - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyPhyRec - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyRefPhy - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studySize - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyStatus - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

506 Indicates if study has complete info (DICOM/genesis).

studyTable - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

studyTableModel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

studyTableSorter - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser

DOCUMENT ME!

studyTaskID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyTaskID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X

studyTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

studyTime - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

studyTime - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

studyTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

studyTime - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyUID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

474 - 32 bytes.

studyUID - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

studyWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

style - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas

style - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text

Stype - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

Stype_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

sub(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

sub(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

sub(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter

sub(MjPolynomial1f, MjPolynomial1f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f

sets this instance to the difference of two polynomial instances.

sub(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

sub(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Minus operator.

sub(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

sub(CVisRGBA, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

sub(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

sub(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

sub(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF

sub(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

sub(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

sub(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

sub(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

sub(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

sub(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Subtracts one vector from another and returns result. result = pt1 - pt2.

sub_into(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

sub_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

sub_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial

sub_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

sub_into(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

sub_into(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA

sub_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

sub_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

sub_into(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF

sub_into(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

sub_into(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

sub_into(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

sub_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

subbands - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

SUBBLOCK_BEAM_SPLITTER - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_BEAM_SPLITTERS - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_DATA_CHANNEL - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_DATA_CHANNELS - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_DETECTION_CHANNEL - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_DETECTION_CHANNELS - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_END - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_ILLUMINATION_CHANNEL - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_ILLUMINATION_CHANNELS - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_LASER - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_LASERS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SUBBLOCK_MARKER - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_MARKERS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SUBBLOCK_RECORDING - Static variable in class gov.nih.mipav.model.file.FileLSM

Values for entries in scan information.

SUBBLOCK_TIMER - Static variable in class gov.nih.mipav.model.file.FileLSM

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SUBBLOCK_TIMERS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SUBBLOCK_TRACK - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

SUBBLOCK_TRACKS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

subBrickIndex - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

subBrickNumber - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

subBrickNumber - Variable in class gov.nih.mipav.model.file.FileInfoAfni

Specifies sub-brick that this file-info belongs to

subButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

subcategory - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

subcluster(AlgorithmGaussianMixtureModelEM.SigSet, int, int, int, double, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM

subdim - Variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

Subdivide(OctNode, float, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

subdivideTriangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Smooth button.

subDivideTriangles(int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

subdivision - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap

subFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileSVS

SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.FileTiff

subFilePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel

SUBIFDS - Static variable in class gov.nih.mipav.model.file.FileSVS

SUBIFDS - Static variable in class gov.nih.mipav.model.file.FileTiff

SUBIN7(double[][], int, double, int, int, double[], double[], double, double[], double, double[], double[], int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SUBJ - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper

subjContributingStatus - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper

subject - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

subjectEditorHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

subjectID - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

subjectInformationStr - Static variable in class gov.nih.mipav.model.file.FileImageXML

array of strings representing the tags under in the xml schema.

subjectModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

model associated with subject information.

subjectName - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

Subject's information.

subjectTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

subject information table.

subjectTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

subjectVOIButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

DOCUMENT ME!

subjectVOIIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

DOCUMENT ME!

subLength - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

Submatrix(int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

Submatrix(int, int, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

Submatrix(int, int, CVisDMatrix, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

Subpath() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Subpath

Subpath(String) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Subpath

subpixel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

subpixel2D(int, int, int, int, int, int, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

subpoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

subQueryPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

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subs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt

subsample - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

If true, subsample image for histogram formation.

subsample - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

subsample(float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

scale down by a factor

subsample(float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

scale down by a factor

subsample(ModelImage, Dimension) - Static method in class gov.nih.mipav.model.file.FileIO

The purpose of this method is to subsample a ModelImage to the dimensions specified by the subsampleDimension parameter.

subSample - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI

Subsample flag.

subsample2D(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Subsample a 2D image.

subSample2dBy2() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples it by 2.

subSample2dBy2(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples it by 2.

subSample2dBy2(ModelSimpleImage) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples it by 2.

subSample2dBy2(ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples it by 2.

subSample2DimBy2(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

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subSample2DimBy2(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

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subsample3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Perform the subsampling.

subsample3dBy2() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples it by 2.

subsample3dBy2(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple 3D image and subsamples it by 2.

subsample3dBy2XY() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple 3D image and subsamples each image plane (XY) by 2.

subsample3dBy2XY(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple 3D image and subsamples each image plane (XY) by 2.

subSample3dBy2XY(ModelSimpleImage) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subSample3dBy2XY(ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subsample4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Perform the subsampling.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subSampleBy2(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subSampleBy2(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Takes a simple image and subsamples it by 2, interpolating so that the new values are averages.

subsampleBy2XY(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subsampleBy2XY(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subsampleBy2XY(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subsampleBy2XY(ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subSampleBy2XY(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subSampleBy2XY(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Takes a simple image and subsamples XY by 2, interpolating so that the new XY values are averages.

subSampleCBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI

Sub sampel combo box.

subsampleCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

subsamplingSanityCheck() - Method in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

subscribersHashtable - Variable in class gov.nih.mipav.model.structures.ReminderThread

DOCUMENT ME!

subscribersHashtable - Variable in class gov.nih.mipav.model.structures.TimeoutThread

DOCUMENT ME!

SUBSET_DICTIONARY - Static variable in class gov.nih.mipav.model.file.DicomDictionary

DOCUMENT ME!

SUBSET_DICTIONARY - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary

DOCUMENT ME!

SUBSET_DICTIONARY_FILENAME - Static variable in class gov.nih.mipav.model.file.DicomDictionary

subset dictionary file name, "dicomsave.dictionary".

SUBSET_DICTIONARY_FILENAME - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary

subset dictionary file name, "dicomsave.dictionary".

subset_preconditioner_start_row_block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions

subsetAlgo - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay

handle for Algorithm Subset *

subsetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

ref to AlgorithmSubset

subsetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

subsetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

subsetAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

subsetAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay

handle for Algorithm Subset *

subsetHashtable - Static variable in class gov.nih.mipav.model.file.DicomDictionary

Hashtable filled with DICOM tags which are a subset (not necessarily a proper subset) of dicom tags in the master table.

subsetImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

subsetImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

SubsetParameterization(int, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.SubsetParameterization

subSetsToArray(Vector<Vector<String>>) - Static method in class gov.nih.mipav.model.file.FilenameSorter

Method will convert a Vector of Vectors of String into a String array.

subsetTreeMap - Static variable in class gov.nih.mipav.model.file.PrivateDicomDictionary

TreeMap filled with DICOM tags which are a subset (not necessarily a proper subset) of dicom tags in the master table.

SubSig() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig

subsm(int, int, int, int[], double[], double[], int[], double[], double[], double[], double[][], double[][], double, double[], double[], int, int, int[], double[], double[][], int, int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B

subspace - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct

subspace_B() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspace_B_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspace_basis() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspace_basis_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

SUBSPACE_DOGLEG - gov.nih.mipav.model.algorithms.CeresSolver.DoglegType

subspace_g() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspace_g_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspace_is_one_dimensional_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy

subspaceEstim(float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

subsystemSpecificDataOffset - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB

subTDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

subtract(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble

Returns a DoubleDouble whose value is (this - y).

Subtract(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor

Subtract(Polynomial, Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial

SUBTRACT - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

SUBTRACT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

SUBTRACT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

DOCUMENT ME!

subtractedBaseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

subtractedSrcImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

subtractionMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

subtractionMask2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

SUBTRACTIVE - Static variable in class gov.nih.mipav.model.structures.VOI

Mask as zeros - i.e. put zeros to indicate where the VOI is located

subtractMask(ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

Removes portions of the image that are masked.

SubtractScaled(NVectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF

SubtractScaled(VectorD, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

SubtractScaled(VectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

subTriangles(ModelImage, float, float, float, float, float, float, float, float, float) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Subdivide the triangle.

subtype - Variable in class gov.nih.mipav.model.structures.VOIBase

initialize subtype to unknown

subType - Variable in class gov.nih.mipav.model.file.FileInfoCZI

subuc(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

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subuc(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

subvid(libdt.Mat[], int, int) - Method in class gov.nih.mipav.model.algorithms.libdt

subvid(libdt.Mat[], int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.libdt

subvid(libdt.Mat[], libdt.Range, libdt.Range, libdt.Range) - Method in class gov.nih.mipav.model.algorithms.libdt

subVOIAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

DOCUMENT ME!

subXDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

subXDim - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

subXTv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction

subXv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction

subYDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

subYDim - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

subZDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

succ - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

succeeded - Static variable in class gov.nih.mipav.view.DICOMDisplayer

DOCUMENT ME!

SucceedingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.SucceedingIterationCallback

success - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Indicates whether the ELSUNC algorithm succeeded in finding a minimum.

success - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Indicates whether the Powell algorithm succeeded in finding a minimum.

success - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary

success - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

flag indicating if method was successful

SUCCESS - Static variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

successful - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica

DOCUMENT ME!

successful - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

sufficient_curvature_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions

sufficient_decrease - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchOptions

suffix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

suffix - Variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO

DOCUMENT ME!

SUITE_SPARSE - gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType

suiteID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

0 - 4 bytes.

SUITESPARSE_VERSION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

sum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

sum - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

sum(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

Sum() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the total sum of the matrix.

Sum() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the sum of the vector.

SUM - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

SUM - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

DOCUMENT ME!

sum2Value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sumB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

sumBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

buffer for storing the current max of an OpenCL buffer

SumCol(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the sum of each column into a vector.

sumG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

sumImg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

651 Summary image field.

sumIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

sumIntensities - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

string to test for when checking on statics to calculate.

sumIntensitiesB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

sumIntensitiesG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

sumIntensitiesR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

SummarizeGivenProgram(CeresSolver.Program, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

SummarizeReducedProgram(CeresSolver.Program, CeresSolver.SolverSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

summary - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolver

summary - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolver

summary - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Solver

summary - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy

summary_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScopedExecutionTimer

summaryBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

Used to indicate the number of histogram bins when using the constructors that do NOT pass in the histogram object.

summaryBins - Variable in class gov.nih.mipav.view.ViewJFrameGraph

summaryField - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Text area for user inputed bug title

SummedWeights - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData

sumPixelInten - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

sumPixelInten - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

sumPixelIntenB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

sumPixelIntenB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

sumPixelIntenG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

sumPixelIntenG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

sumPixelIntenR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

sumPixelIntenR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

sumR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

sums - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression

sumValue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

sumwt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

sumwty - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

SUNDenseLinearLapackSolver(CVODES.NVector, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNDenseLinearSolver(CVODES.NVector, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

sUnits - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Deprecated.

SUNLINEARLAPACKSOLVER_DIRECT - gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

SUNLinearSolver() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver

SUNLINEARSOLVER_CUSTOM - gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

SUNLINEARSOLVER_DIRECT - gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

SUNLINEARSOLVER_ITERATIVE - gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

SUNLinearSolver_Type() - Constructor for enum gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

SUNLinSolFree_Dense(CVODES.SUNLinearSolver) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLinSolInitialize_Dense(CVODES.SUNLinearSolver) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLinSolSetup_Dense(CVODES.SUNLinearSolver, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLinSolSetup_LapackDense(CVODES.SUNLinearSolver, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLinSolSolve_Dense(CVODES.SUNLinearSolver, double[][], CVODES.NVector, CVODES.NVector, double) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLinSolSolve_LapackDense(CVODES.SUNLinearSolver, double[][], CVODES.NVector, CVODES.NVector, double) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_ATIMES_FAIL_REC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_ATIMES_FAIL_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_CONV_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_GS_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_ILL_INPUT - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_LUFACT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_MEM_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_MEM_NULL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PACKAGE_FAIL_REC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PACKAGE_FAIL_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PSET_FAIL_REC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PSET_FAIL_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PSOLVE_FAIL_REC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_PSOLVE_FAIL_UNREC - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_QRFACT_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_QRSOL_FAIL - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_RES_REDUCED - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNLS_SUCCESS - Variable in class gov.nih.mipav.model.algorithms.CVODES

SUNMatCopy(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNMatScaleAddI(double, double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

SUNMatZero(double[][]) - Method in class gov.nih.mipav.model.algorithms.CVODES

sup_to_col - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCformat

sup_to_colbeg - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat

sup_to_colend - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SCPformat

sup4thick(double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

SUPER_CIRCLE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm

Super-circle Halftoning

super_stats(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

SUPERIOR_EDGE - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage

AC-PC: Superior Edge reference point.

SUPERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage

Talairach: Superior reference point.

superiorCenter - Variable in class gov.nih.mipav.model.file.FileInfoMGH

superiorEdge - Variable in class gov.nih.mipav.model.file.FileInfoAfni

markers used for +orig to +ACPC transformation.

superiorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

superiorEdgeDicom - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

superiorEdgePt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

superiorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

superiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach

DOCUMENT ME!

superiorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC

superiorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach

DOCUMENT ME!

superiorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC

superKey - Variable in class gov.nih.mipav.model.file.FileOME.MyXMLHandler

The parent XML tag of the element we are currently parsing.

superlu() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

SuperLU - Class in gov.nih.mipav.model.structures.jama

The source code is distributed under BSD license, see the file License.txt at the top-level directory.

SuperLU() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU

superlu_abort_and_exit(String) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

superlu_options_t() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t

SuperLU.Colamd_Col - Class in gov.nih.mipav.model.structures.jama

SuperLU.Colamd_Row - Class in gov.nih.mipav.model.structures.jama

SuperLU.colperm_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.DiagScale_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.DNformat - Class in gov.nih.mipav.model.structures.jama

SuperLU.doublecomplex - Class in gov.nih.mipav.model.structures.jama

SuperLU.Dtype_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.ExpHeader - Class in gov.nih.mipav.model.structures.jama

SuperLU.fact_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.GlobalLU_t - Class in gov.nih.mipav.model.structures.jama

SuperLU.IterRefine_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.LU_space_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.LU_stack_t - Class in gov.nih.mipav.model.structures.jama

SuperLU.mem_usage_t - Class in gov.nih.mipav.model.structures.jama

SuperLU.MemType - Enum in gov.nih.mipav.model.structures.jama

SuperLU.milu_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.Mtype_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.NCformat - Class in gov.nih.mipav.model.structures.jama

The storage schemes are defined as follows

SuperLU.NCPformat - Class in gov.nih.mipav.model.structures.jama

SuperLU.norm_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.NRformat - Class in gov.nih.mipav.model.structures.jama

SuperLU.NRformat_loc - Class in gov.nih.mipav.model.structures.jama

SuperLU.NRformat_loc3d - Class in gov.nih.mipav.model.structures.jama

SuperLU.PhaseType - Enum in gov.nih.mipav.model.structures.jama

SuperLU.rowperm_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.rule_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.SCformat - Class in gov.nih.mipav.model.structures.jama

SuperLU.SCPformat - Class in gov.nih.mipav.model.structures.jama

SuperLU.stack_end_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.Stype_t - Enum in gov.nih.mipav.model.structures.jama

The matrix types are defined as follows

SuperLU.superlu_options_t - Class in gov.nih.mipav.model.structures.jama

SuperLU.SuperLUStat_t - Class in gov.nih.mipav.model.structures.jama

SuperLU.SuperMatrix - Class in gov.nih.mipav.model.structures.jama

SuperLU.trans_t - Enum in gov.nih.mipav.model.structures.jama

SuperLU.yes_no_t - Enum in gov.nih.mipav.model.structures.jama

SuperLUStat_t() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t

SuperMatrix() - Constructor for class gov.nih.mipav.model.structures.jama.SuperLU.SuperMatrix

supno - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

supp_tech - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

392 SAT fat/water/none.

support_width - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet

supportsRemoteBufferedImage() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img

supportsRemoteBufferedImage() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Returns true when this implementation of ContourPlot.ImgBase supports the ContourPlot.ImgBase.getRemoteBufferedImage() method.

supportsTexture3D() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Check to see if 3D textures are supported by the graphics card.

suppressionConfidenceText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

suppressionRankText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

suppressionTechnique - Variable in class gov.nih.mipav.model.file.FileGESigna4X

suppressionTechnique - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

suppressProgressBar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

suppressProgressBar - Variable in class gov.nih.mipav.model.file.FileIO

suppressProgressBar - Variable in class gov.nih.mipav.model.file.FileSVS

suppressProgressBar - Variable in class gov.nih.mipav.model.file.FileTiff

suppressUnknownFileTypeDialog - Variable in class gov.nih.mipav.model.file.FileIO

suppTags - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags

SUR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

View Mode Surface Constant:

surf - Variable in class gov.nih.mipav.view.ViewJFrameMemory

thread.

surf - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages

thread to watch image registry.

Surface - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams

Surface - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

SURFACE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

SURFACE - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

Surface Files (*.sur).

SURFACE_XML - Static variable in class gov.nih.mipav.model.file.FileUtility

MIPAV Surface XML file format. extension: .xml

surfaceAdded() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Returns true if a surface exists in the Renderer.

surfaceAmbient - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceArea - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface

surfaceArea - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

surfaceAreaDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

SurfaceAttributes - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

Class that holds the information about each surface displayed in the SurfaceRenderer.

SurfaceAttributes(ModelTriangleMesh[], String, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes

Constructor.

surfaceBackFaceCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Check Box for surface back face culling.

surfaceBackFaceCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Check Box for surface back face culling.

surfaceBoxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

surfaceClipCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Check Box for surface clpping of the volume render.

surfaceClipCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Check Box for surface clpping of the volume render.

SurfaceClipEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Surface clipping.

SurfaceClipEffect() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceClipEffect

Create a surface clip effect.

surfaceCoilIntensityCorrection - Variable in class gov.nih.mipav.model.file.FileGESigna4X

surfaceCoilIntensityCorrection - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

surfaceCoilsCorrectionType - Variable in class gov.nih.mipav.model.file.FileGESigna4X

surfaceCoilsCorrectionType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

surfaceCoilType - Variable in class gov.nih.mipav.model.file.FileGESigna4X

surfaceCoilType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

surfaceCoilType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

380.

surfaceColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

A vector of BitSet masks, one for each surface loaded into the viewer.

SurfaceColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

surfaceColumnNames - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

array of strings for surface column names.

surfaceCompositeInit - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceDir - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Loaded mask surface image directory.

surfaceDirectional - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceDirectionalStatic - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceDirectoryName - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The directory where a surface file was last loaded/saved.

SurfaceDisplay() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay

Creates surface display table.

SurfaceExtractImage - Class in gov.nih.mipav.view.renderer.WildMagic.Render

SurfaceExtractImage(GraphicsImage.FormatMode, int, int, int, byte[], String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage

Construct a 3D image (byte)

SurfaceExtractor - Class in gov.nih.mipav.view.renderer.WildMagic.Interface

A level surface extractor that is based on decomposing voxels into tetrahedra, assuming a linear interpolation on the tetrahedra, and extracting triangular level sets for those tetrahedra.

SurfaceExtractor(int, int, int, int[], float, float, float, int[], float[], TransMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractor

Create a level surface extractor for a 3D image.

SurfaceExtractorCubes - Class in gov.nih.mipav.view.renderer.WildMagic.Interface

A level surface extractor that is based on decomposing voxels into cubes, assuming a linear interpolation on the cubes, and extracting triangular level sets for those cubes.

SurfaceExtractorCubes(int, int, int, int[], float, float, float, int[], float[], TransMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceExtractorCubes

Create a level surface extractor for a 3D image.

surfaceFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface

Path and name of extracted surface file. ".sur" will be appended if necessary.

surfaceFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes

Path and name of extracted surface file. ".sur" will be appended if necessary.

surfaceFileName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction

DOCUMENT ME!

surfaceFileName - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes

Path and name of extracted surface file. ".sur" will be appended if necessary.

surfaceFinish - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceGeodesic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Geodesic reference.

surfaceGeodesic - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Geodesic reference.

SurfaceGifitXMLHandler(FileInfoSurfaceGiftiXML_WM) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler

Creates a new SurfaceXMLHandler object.

surfaceGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

3D Surface user-interface panel:

surfaceInit - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceInitColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceInitColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SurfaceLightingEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Surface lighting uses the lights defined in the Volume/Surface/Tri-Planar view in the vertex and pixel shaders.

SurfaceLightingEffect(VolumeImage[], Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

SurfaceLightingEffect(VolumeImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect

Creates a LightingEffect

SurfaceLink(String) - Constructor for class gov.nih.mipav.model.file.FileInfoImageXML.SurfaceLink

Create a new surface link with the given path.

surfaceList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The list box in the dialog for surfaces.

surfaceList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

surfaceList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

The list box in the dialog for surfaces.

SurfaceList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

SurfaceLoaderSUR - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview

Class used to load a surface stored in an file using the SUR format.

SurfaceLoaderSUR(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.SurfaceLoaderSUR

Open the specified file and load the surface data, stored in the SUR surface format, from it.

surfaceMask - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

A vector of BitSet masks, one for each surface loaded into the viewer.

SurfaceMask - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

SurfaceMask.

SurfaceMask() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

Default Constructor:

SurfaceMaterialDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Display component in the dialog that displays the material parameters for the surface.

SurfaceMaterialDisplay(MaterialState, Light[], boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay

Constructor.

surfaceNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

A vector of the mask names, so they can be accessed by name:

surfaceOpacity - Variable in class gov.nih.mipav.view.renderer.SceneState

Surface opacity slider value of the surface dialog.

surfaceOpacityEvents - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Surface opacity changes event queue.

surfaceOpacitySlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Surface volume opacity.

surfacePaint - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls

SurfacePaint reference

surfacePaint - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

SurfacePaint reference

SurfacePaint - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

SurfacePaint(JPanelSurface, SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Default Constructor

surfacePaint_WM - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls

SurfacePaint reference

surfacePaint_WM - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

SurfacePaint reference

SurfacePaint_WM - Class in gov.nih.mipav.view.renderer.WildMagic.Interface

SurfacePaint_WM(JPanelSurface_WM, VolumeTriPlanarInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Constructor.

surfacePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dialog for loading and displaying surfaces.

surfacePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dialog for loading and displaying surfaces.

surfacePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

surfacePickableCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Check Box for surface pickable.

surfacePickableCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Check Box for surface picking.

SurfacePlotter - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview

Frame that holds the surface plotter.

SurfacePlotter(ModelImage, ModelLUT, int, GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Makes a frame and puts the image and the plotted quad mesh into it.

surfacePoint - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfacePointStatic - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceReconstructionTBI() - Method in class gov.nih.mipav.view.ViewJFrameImage

SURFACEREF_XML - Static variable in class gov.nih.mipav.model.file.FileUtility

MIPAV Surface XML file format. extension: .xml

SurfaceRefXMLHandler(FileInfoSurfaceRefXML_J3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler

Creates a new SurfaceXMLHandler object.

SurfaceRefXMLHandler(FileInfoSurfaceRefXML_WM) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler

Creates a new SurfaceXMLHandler object.

surfaceRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase

Surface renderer reference.

surfaceRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Surface Render reference.

surfaceRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

The surface render reference.

surfaceRender - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Surface renderer reference.

SurfaceRender - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

Frame that holds the surface renderer.

SurfaceRender(ModelImage, ModelImage, GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Constructor called by the VirtualEndoscopyView.

SurfaceRender(ModelImage, ModelLUT, ModelImage, ModelLUT, ViewJFrameBase, GraphicsConfiguration, ViewJProgressBar) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Makes a frame and puts the three image planes into it.

surfaceRootBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The branch group that holds all the surfaces together.

surfaceRootTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The transform group to which the model lights are attached.

surfaces - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

List of files which describe surfaces attached to this image.

surfaces - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

for displaying surfaces.

surfaceSliderCount - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Counter for surface opacity slider moves.

surfaceSpot - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

surfaceSpotStatic - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SurfaceState - Class in gov.nih.mipav.view.renderer.WildMagic.Interface

SurfaceState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

SurfaceState(TriMesh, String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

surfaceStr - Static variable in class gov.nih.mipav.model.file.FileImageXML

array of strings representing the tags under in the xml schema.

surfaceTextureGUI - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Surface Texture user-interface panel:

surfaceTexturePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Panel for displaying the SurfaceTexture interface:

surfaceTexturePanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Panel for displaying the SurfaceTexture interface:

surfaceTransparencyCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Check Box for surface transparency.

surfaceTransparencyCB - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Check Box for surface transparency.

surfaceVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

A list of the surfaces.

SurfaceView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

Frame that holds the surface renderer.

SurfaceView(ModelImage, ModelImage, GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Constructor called by the VirtualEndoscopyView.

SurfaceView(ModelImage, ModelLUT, ModelImage, ModelLUT, ViewJFrameBase, GraphicsConfiguration, ViewJProgressBar) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Makes a frame and puts the three image planes into it.

SURFACEVIEW - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

SurfaceXMLHandler(FileInfoSurfaceXML_J3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler

Creates a new SurfaceXMLHandler object.

surfacState - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

SURFASTMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Invoke the SURFACEFAST rendering mode.

SURFASTMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Display the volume in Surface mode.

SURFASTMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Change to the Surface mode pixel shader program.

SURFASTMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SURFASTMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Display the volume in Surface mode.

surfcext - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

382 Extremity Coil Flag.

surLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay

DOCUMENT ME!

SURMode() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Invoke the SURFACE rendering mode.

SURMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Display the volume in Composite Surface mode.

SURMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Change to the Composite Surface mode pixel shader program.

SURMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

SURMode() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Display the volume in Composite Surface mode.

SURMode(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

surModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay

DOCUMENT ME!

surName - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

surPickLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Label to indicate that enable Surface pickable before drawing geodesic line.

surPickLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Label to indicate that enable Surface pickable before drawing geodesic line.

surRender - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

SurfaceRender reference.

surRender - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

SurfaceRender reference.

surRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Three types of renderer.

surTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay

DOCUMENT ME!

surTabVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

surTabVector - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

For each render, use the vector to store the currently active tabs.

surView - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Surface View reference

suspensions - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

SutterDG4Filter - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

SutterL10Filter1Array - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

SutterL10Filter2Array - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

SV - gov.nih.mipav.model.file.FileDicomTagInfo.VR

SV - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model

SV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model

sv_actual - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer

sv_coef - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model

sv_coef - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model

sv_colormap8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer

sv_colormap8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2

sv_colormap9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer

sv_colormap9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_cquantizer2

sv_indices - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_model

Sval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions

< Regularization method for S.

SVC_Q - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

SVC_Q(LIBSVM.svm_problem, LIBSVM.svm_parameter, byte[]) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q

SVC_Q(svm_problem, svm_parameter, byte[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q

svd - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

svd - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2

svd - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SVD - Class in gov.nih.mipav.model.structures.jama

SVD() - Constructor for class gov.nih.mipav.model.structures.jama.SVD

svdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

svdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

svdMethodsSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

Svec() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Svec

svm - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

svm() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

SVM - Class in gov.nih.mipav.model.algorithms

SVM() - Constructor for class gov.nih.mipav.model.algorithms.SVM

svm_binary_svc_probability(LIBSVM.svm_problem, LIBSVM.svm_parameter, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_binary_svc_probability(svm_problem, svm_parameter, double, double, double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_check_parameter(LIBSVM.svm_problem, LIBSVM.svm_parameter) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_check_parameter(svm_problem, svm_parameter) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_check_probability_model(LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_check_probability_model(svm_model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_cross_validation(LIBSVM.svm_problem, LIBSVM.svm_parameter, int, double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_cross_validation(svm_problem, svm_parameter, int, double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_get_labels(LIBSVM.svm_model, int[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_labels(svm_model, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_get_nr_class(LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_nr_class(svm_model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_get_nr_sv(LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_sv_indices(LIBSVM.svm_model, int[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_svm_type(LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_svm_type(svm_model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_get_svr_probability(LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_get_svr_probability(svm_model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_group_classes(LIBSVM.svm_problem, int[], int[][], int[][], int[][], int[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_group_classes(svm_problem, int[], int[][], int[][], int[][], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_load_model(BufferedReader) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_load_model(BufferedReader) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_load_model(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_load_model(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_model - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_model() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_model

svm_model() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_model

svm_node - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_node() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_node

svm_node() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node

svm_node(int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node

svm_one_class_probability(LIBSVM.svm_problem, LIBSVM.svm_model, double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_parameter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_parameter() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

svm_parameter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

svm_predict - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_predict() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict

svm_predict(LIBSVM.svm_model, LIBSVM.svm_node[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_predict(svm_model, svm_node[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_predict_probability(LIBSVM.svm_model, LIBSVM.svm_node[], double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_predict_probability(svm_model, svm_node[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_predict_values(LIBSVM.svm_model, LIBSVM.svm_node[], double[]) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_predict_values(svm_model, svm_node[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_print_interface - Interface in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_print_null - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

svm_print_null - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train

svm_print_stdout - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

svm_print_stdout - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_print_string - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

svm_print_string - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_problem - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_problem() - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_problem

svm_problem() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_problem

svm_save_model(String, LIBSVM.svm_model) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_save_model(String, svm_model) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_scale - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_scale() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

svm_set_print_string_function(LIBSVM.svm_print_interface) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_set_print_string_function(svm_print_interface) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_svr_probability(LIBSVM.svm_problem, LIBSVM.svm_parameter) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_svr_probability(svm_problem, svm_parameter) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_toy - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_toy() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy

svm_toy_frame(String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame

svm_toy.point - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

svm_train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.

svm_train() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train

svm_train(LIBSVM.svm_problem, LIBSVM.svm_parameter) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_train(svm_problem, svm_parameter) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_train_one(LIBSVM.svm_problem, LIBSVM.svm_parameter, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM

svm_train_one(svm_problem, svm_parameter, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm_type - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

svm_type - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

svm_type_table - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

svm_type_table - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm

svm.decision_function - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

SVM.svmtest - Class in gov.nih.mipav.model.algorithms

SVM.VlHomogeneousKernelMap - Class in gov.nih.mipav.model.algorithms

SVM.VlHomogeneousKernelMapWindowType - Enum in gov.nih.mipav.model.algorithms

SVM.VlHomogeneousKernelType - Enum in gov.nih.mipav.model.algorithms

SVM.VlSvm - Class in gov.nih.mipav.model.algorithms

SVM.VlSvmDataset - Class in gov.nih.mipav.model.algorithms

SVM.VlSvmLossType - Enum in gov.nih.mipav.model.algorithms

SVM.VlSvmSolverStatus - Enum in gov.nih.mipav.model.algorithms

SVM.VlSvmSolverType - Enum in gov.nih.mipav.model.algorithms

SVM.VlSvmStatistics - Class in gov.nih.mipav.model.algorithms

svmModelChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

SVM model panel.

svmModelDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

svmModelName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

svmOptionsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

svmOptionsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

svmSortModelStructure() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

sort SVM model with names.

svmtest() - Constructor for class gov.nih.mipav.model.algorithms.SVM.svmtest

svmTrainingBinary - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

svmTrainingBinary - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

flag to indicate is SVM training with binary class or multi-class.

svmTraverseDir(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Processing SVM model atlas.

SVR_Q - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm

SVR_Q(LIBSVM.svm_problem, LIBSVM.svm_parameter) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q

SVR_Q(svm_problem, svm_parameter) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q

svrmu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SVRMU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SVS - Static variable in class gov.nih.mipav.model.file.FileUtility

Aperio TIFF based .svs

sW - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

swap(double[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter

Swaps x[a] with x[b].

swap(double[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

swap(int[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

swap(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue

swap(IntArrayPointer, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

swap(Object[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.QuickSort

swap(Object[], int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.QuickSort

swap(T, T) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

Swap(int[], int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Swap values

SWAP(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Poly

SWAP_DOUBLE_ARRAY(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Cache

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.QMatrix

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q

swap_index(int, int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.QMatrix

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q

swap_index(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q

swap_points(int, NelderMead.point_t, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead

swap14() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims

Swaps the image first and fourth dimensions and replaces the source image with the swapped dimension image.

SWAP14 - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims

swap34() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34

Swaps the image third and fourth dimensions and replaces the source image with the swapped dimension image.

swap34() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims

Swaps the image third and fourth dimensions and replaces the source image with the swapped dimension image.

SWAP34 - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims

swap34Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogSwap34

DOCUMENT ME!

swapAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Running algorithm

swapDimsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims

DOCUMENT ME!

swapMatrixForVector(double[][], float[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

swapMatrixForVectorB(double[][], float[][], int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

SwapMode(String, int) - Constructor for enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode

swapModelClipBG(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Swap ModelClip Branch group between the 6 clipping plane and the arbitray clipping plane.

swapPF - Variable in class gov.nih.mipav.model.file.FileGESigna4X

swapPF - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

swapPF - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

262 Swap phase-frequency axis.

swapSlices() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Calculates the final output and stores it in the source image.

swapSlices(double[], double[], int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

Swap slices in order to apply FFT algorithm.

swapSlices(float[], float[], int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

Swap slices in order to apply FFT algorithm.

swapType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims

swapType - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapDims

swapVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Result image

swapXY - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Internal TrackVis use

swapXZ - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Internal TrackVis use

swapYAxis(P, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils

Swaps between GL and AWT coordinates, AWT coordinate system has its origin in the top left corner of a component and downwards pointing y axis, whereas GL has its origin in the bottom left corner of the viewport (at least in JPlotter) and upwards pointing y axis.

swapYZ - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Internal TrackVis use

sWarpEntry() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry

Swf - gov.nih.mipav.model.file.MetadataExtractor.FileType

swiAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

This is the SWIs algorithm

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

The switch group that switch between CoolTip probe and indicator probe.

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe

Switch group used to switch between cyan and green probes.

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

The switch group that switch between regular probe and indicator probe.

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

Switch group to switch between thermal branch group and the indicator branch group.

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Tri planar view and the 3D texture volume view switch group.

switchGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Tri planar view and the 3D texture volume view switch group.

switchPaintAndMask(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

Converts paint to a mask, then mask to paint.

switchTabList(String) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Update the tabbed pane when switch view buttons in the View toolbar.

switchToSliceView(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Perform some actions required when switching to the slice renderer.

switchToSliceView(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Perform some actions required when switching to the slice renderer.

switchToVolView(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Perform some actions required when switching to the volume renderer.

switchToVolView(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Perform some actions required when switching to the volume renderer.

swt(double[], int, double[], int, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt(double[], PyWavelets.DiscreteWavelet, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SWT - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SWT - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

swt_a(double[], int, PyWavelets.DiscreteWavelet, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt_axis(double[][][], PyWavelets.DiscreteWavelet, int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt_axis(double[][], PyWavelets.DiscreteWavelet, int, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt_buffer_length(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt_d(double[], int, PyWavelets.DiscreteWavelet, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt_max_level(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SWT_TRANSFORM - gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType

swt1D(double[][][], PyWavelets.DiscreteWavelet, int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt1D(double[][], PyWavelets.DiscreteWavelet, int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt1D(double[], PyWavelets.DiscreteWavelet, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swt2(double[][], PyWavelets.DiscreteWavelet[], int, int, int[], boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SWTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

swtn(double[][][], PyWavelets.DiscreteWavelet[], int, int, int[], boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

swtn(double[][], PyWavelets.DiscreteWavelet[], int, int, int[], boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

Sx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

Sx - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

Sy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

Sy - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

sycc_to_rgb(int, int, int[], int, int[], int, int[], int, int[], int, int[], int, int[], int) - Method in class gov.nih.mipav.model.file.FileJPEG2000

sycc420_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000

sycc422_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000

sycc444_to_rgb(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000

SYINF1(int[], int[], double[], double[], boolean, double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SYM - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME

sym_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym10_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym11_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym12_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym13_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym14_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym15_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym16_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym17_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym18_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym19_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym20_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

sym9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

SYMBFAC - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

symetrize(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D

symm_anls() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SYMM_ANLS - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

symm_halsacc() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SYMM_HALSACC - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

symm_newton() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

SYMM_NEWTON - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

symmetric - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Sep_FIR_filter

Symmetric - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

Symmetric - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

SYMMETRIC - Static variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter

Scale type: d' = -1 + 2*(d-min)/(max-min) in [-1,1]

symmetric_bc(int, int, boolean[]) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW

Symmetric boundary condition test

SYMMETRIC_ORTHOGONALIZATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

SYMMETRICAL_TRIANGULAR_FUZZY_TRUNCATED_MEDIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

SYMMETRICAL_TRIANGULAR_FUZZY_TRUNCATED_MEDIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

SymmetricIndex(int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

SymmetricIndex(int, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

SymmetricMode - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t

symmetricOrthogonalization - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

SymmetricPtCrv(CAAMShape, CAAMShape) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

A symmetric poin- to-curve measure, i.e.

SymmetricRankUpdate(int, int, double[], boolean, double, double, double[][]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

SymmetricRightMultiply(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix

symmetry - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet

symmetry - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info

SYMMETRY(int) - Constructor for enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

SymmsIntegralMapping - Class in gov.nih.mipav.model.algorithms

SymmsIntegralMapping() - Constructor for class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SymmsIntegralMapping(ModelImage, ModelImage, String, boolean, boolean, double[], int, boolean[], int[], double[][], int[], double[], int[], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

SymmsIntegralMapping.qaws - Class in gov.nih.mipav.model.algorithms

SymPattern - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t

SYMTY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

Sync() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader

Sync to read number.

syncImagesIcon - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

syncWithEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream

syncWithEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream

Synthesize(CAAMShape, CDVector, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize

Image synthesize.

Synthesize(CAAMShape, CDVector, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware

Renders a texture vector into a shape.

synthetic - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

SYNTHETIC_BLUR_SIZE - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

SYNTHETIC_NOISE_STD - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

SYSTEM - gov.nih.mipav.model.structures.jama.SuperLU.LU_space_t

SystemArchitecture() - Constructor for enum gov.nih.mipav.view.Preferences.SystemArchitecture

systemConfigHospitalName - Variable in class gov.nih.mipav.model.file.FileGESigna4X

systemConfigHospitalName - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

systemDPHolder - Variable in class gov.nih.mipav.view.ViewUserInterface

System DP holder (separate from images data provenance...this has everything).

systemGenerationID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

systemGenerationID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

systemID - Variable in class gov.nih.mipav.model.file.FileGESigna4X

systemID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

Use serialVersionUID for interoperability.

Sz - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

Sz - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

SZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes

szptr - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

T

t - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.P

t - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

t - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

t - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT

t - Variable in class gov.nih.mipav.model.algorithms.curev

t - Variable in class gov.nih.mipav.model.algorithms.curfit

t - Variable in class gov.nih.mipav.model.algorithms.CVODES.DtpntMemRec

t - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

t - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

t - Variable in class gov.nih.mipav.model.algorithms.ODE

t - Variable in class gov.nih.mipav.model.algorithms.ODEEP

t - Variable in class gov.nih.mipav.model.algorithms.splev

Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.

t - Variable in class gov.nih.mipav.model.algorithms.sproot

Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.

t - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

t - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

DOCUMENT ME!

t - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link

t - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT_REC

t - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.EVENT

t(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

T - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency

T - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSFTA

T - Static variable in class gov.nih.mipav.model.algorithms.Cephes

T - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

T - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Edge

DOCUMENT ME!

T - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Triangle

DOCUMENT ME!

T - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex

DOCUMENT ME!

t_add(int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

t_bounds_from_pars(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

t_cut_res - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_hjump - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_m - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_m2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_method - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

t_mult(int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

t_old_cut_res - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_old_m - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

t_r - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

t_x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

t_x - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

t_y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

t_y - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

t_z - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

t_z - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

t0 - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec

t0 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

t0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

t0_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

t1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

thresholds used in linear correlation calculations if doSecondIteration is true.

t1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting

t1 - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration

t1 - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject

t1 - Variable in class gov.nih.mipav.model.algorithms.CVODES_ASA.CVadjCheckPointRec

t1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

t1 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

T1_CTXNO_AGG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_CTXNO_MAG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_CTXNO_SC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_CTXNO_UNI - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_CTXNO_ZC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_NUMCTXS_AGG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_NUMCTXS_MAG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_NUMCTXS_SC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_NUMCTXS_ZC - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< No encoding the information is store under raw format in codestream (mode switch RAW)

T1_REFINE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_responses(double[][], double[][], double[], double[], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[], int[], int, int, double, double, double, int, int, String, String[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T1_SGN - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SGN_E - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SGN_N - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SGN_S - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SGN_W - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SIG - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SIG_E - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : North direction

T1_SIG_N - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : North-West direction

T1_SIG_NE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SIG_NW - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : South-West direction

T1_SIG_OTH - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : West direction

T1_SIG_PRIM - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_SIG_S - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : East direction

T1_SIG_SE - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : North-East direction

T1_SIG_SW - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : South-East direction

T1_SIG_W - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Context orientation : South direction

T1_TYPE_MQ - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

T1_TYPE_RAW - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

< Normal coding using entropy coder

T1_VISIT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

t15Radio - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

T1Combo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree

t1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

t1ImageName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

t1ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

t1ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

t1ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

The frames for result images (if null at end of algorithm src ModelImage is destroyed)

T1z2_get_filter_struct(double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[], double[], double, double, String, double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T1z2a_convert_filter(double[], double[], double[], double[], double[], double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T1z2b_time_resp(double[], double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

t2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

thresholds used in linear correlation calculations if doSecondIteration is true.

t2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting

t2 - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration

t2 - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject

t2 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

t2FileLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

DOCUMENT ME!

t2frame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

T2frame - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

T2Image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

Structural image as reference space (T2 image):

T2loadPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection

t2OpenPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

t2ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

t2ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

The frames for result images (if null at end of algorithm src ModelImage is destroyed)

T2z0_projection_terms(double[][][][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], int[], int, int, String[], ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z0a_invert_design(double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1_filter(double[][], double[][], double[][], double[][], int[][], double[][], double[][], double[][], double[][], double[], double[], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], int[], String[], int[], int, ModelImage, double[][][][][], String, String, double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1a_make_image_structure(double[], double[], double[], double[], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1b_get_responses_freq(double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], int, double[], double[], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1b_get_responses_time(double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1d_esa2D(double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], int, double[], double[], double, double, double, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

T2z1dI_get_responses_freq_gabor(double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

t3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting

t3 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

t30Radio - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

t3d_XY_t - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Actual transform of the image.

t4 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

T4OPTIONS - Static variable in class gov.nih.mipav.model.file.FileSVS

T4OPTIONS - Static variable in class gov.nih.mipav.model.file.FileTiff

t5 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

T6OPTIONS - Static variable in class gov.nih.mipav.model.file.FileSVS

T6OPTIONS - Static variable in class gov.nih.mipav.model.file.FileTiff

tab - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

TAB - Static variable in class gov.nih.mipav.model.file.FileXML

TAB string.

TAB_NAME_LABEL - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveTab

The label to use for the tab name parameter.

TabbedItem(String, JPanel) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView.TabbedItem

Creates a new TabbedItem object.

TabbedItem(String, JPanel) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView.TabbedItem

Creates a new TabbedItem object.

TabbedItem(String, JPanel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface.TabbedItem

Creates a new TabbedItem object.

TabbedList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

The tabbed pane that holds each dimension

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Tabbed pane

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

tabbed pane

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Tabbed pane

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

tabbedPane - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

tabbed pane for w/L and min/max *

tabbedPane - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog

tabbedPane - Variable in class gov.nih.mipav.view.JFrameHistogram

tabbed pane, each separate tab contains the interface for imageA and imageB

tabbedPane - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Tabbed pane that contains the list of opacity functions.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Tabbed Panel that hold the each clipping planes control box.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Tabbed pane that contains the list of opacity functions.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

The main tabbed pane in the volume view frame.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The main tabbed pane in the volume view frame.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

The main tabbed control panel.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

The Tabbed control panel.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Tabbed Panel that hold the each clipping planes control box.

tabbedPane - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

The main tabbed pane in the volume view frame.

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameBase

The main tabbed pane in the volume view frame.

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameMessage

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

tabbedPane - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

tabDelimited - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticFileFormatOptions

Radio button to choose a tab-delimited file.

table - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge

table - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap

table - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance.SelectionListener

table - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

DOCUMENT ME!

table - Variable in class gov.nih.mipav.view.JPanelEditSetOrParam

DOCUMENT ME!

table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge

table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge

table - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

TABLE_SIZE - Variable in class gov.nih.mipav.model.file.libjpeg

table1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

table1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

table1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

table1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

table2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

table2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

table2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

table2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

table3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

table3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

table3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

table3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

table4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

table4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

table4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

table4 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

table5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

table5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

table5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

table5 - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

tableCellRenderer - Variable in class gov.nih.mipav.model.structures.TableSorter.SortableHeaderRenderer

DOCUMENT ME!

tableChanged(TableModelEvent) - Method in class gov.nih.mipav.model.structures.TableSorter.TableModelHandler

DOCUMENT ME!

tableChanged(TableModelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

tableChanged(TableModelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

tableChanged(TableModelEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

tableDelta - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

214.

tableDestination - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Log file destination.

tableDestinationUsage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Indicates options for OVERWRITE, APPEND for the xlat file.

tableHeader - Variable in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

tableIndex - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder

DOCUMENT ME!

TableListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TableListener

TableListener() - Constructor for class gov.nih.mipav.view.ViewJFrameDICOMParser.TableListener

tableLocation - Variable in class gov.nih.mipav.model.file.FileGESigna4X

tableLocation - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

tableModel - Variable in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

tableModel - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

TableModelHandler() - Constructor for class gov.nih.mipav.model.structures.TableSorter.TableModelHandler

tableModelListener - Variable in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

tableNo - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

Table number - always 0 for non-color images.

tableOutput() - Method in class gov.nih.mipav.view.ViewJFrameGraph

tablePane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

tablePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Panel contains JTable for storing dicom tags.

tablePosition - Variable in class gov.nih.mipav.model.file.FileGESigna4X

tablePosition - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

tables - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TableSorter - Class in gov.nih.mipav.model.structures

TableSorter is a decorator for TableModels; adding sorting functionality to a supplied TableModel.

TableSorter() - Constructor for class gov.nih.mipav.model.structures.TableSorter

Creates a new TableSorter object.

TableSorter(TableModel) - Constructor for class gov.nih.mipav.model.structures.TableSorter

Creates a new TableSorter object.

TableSorter(TableModel, JTableHeader) - Constructor for class gov.nih.mipav.model.structures.TableSorter

Creates a new TableSorter object.

TableSorter.Arrow - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

TableSorter.Directive - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

TableSorter.MouseHandler - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

TableSorter.Row - Class in gov.nih.mipav.model.structures

Helper classes.

TableSorter.SortableHeaderRenderer - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

TableSorter.TableModelHandler - Class in gov.nih.mipav.model.structures

DOCUMENT ME!

tableStream - Variable in class gov.nih.mipav.model.file.FileSVS

tableStream - Variable in class gov.nih.mipav.model.file.FileTiff

TableTransferImporter(JTable) - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter

tabLevel - Variable in class gov.nih.mipav.model.file.FileXML

tab level counter for writing xml header.

tabPane - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

tabPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The main tab contrl panel.

tabs - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage

tabVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

For each render, use the vector to store the currently active tabs.

tag - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Feature

tag - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier

The Dicom Tag, held here to return the name of the tag, and when we need the value when processing.

tag - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

Tag(int, MetadataExtractor.Directory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Tag

TAG - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

A dicom tag is stored in the tag's value

TAG_35MM_FILM_EQUIV_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the equivalent focal length assuming a 35mm film camera, in mm.

TAG_9050A - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_9050B - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_9050C - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_ACCELERATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ACCELERATION_VECTOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_ACCELEROMETER_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ACCELEROMETER_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ACCELEROMETER_Z - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ACCESSORY_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ACCESSORY_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ACTION_ADVISED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ACTIVE_D_LIGHTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The active D-Lighting setting.

TAG_ADAPTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

A description of any auxiliary lens, as a string.

TAG_ADJUSTMENT_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_ADVANCED_SCENE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Normal
2 = Outdoor/Illuminations/Flower/HDR Art
3 = Indoor/Architecture/Objects/HDR B&W
4 = Creative
5 = Auto
7 = Expressive
8 = Retro
9 = Pure
10 = Elegant
12 = Monochrome
13 = Dynamic Art
14 = Silhouette

TAG_AE_BRACKET_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The AE bracket compensation, as a rational number.

TAG_AE_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_AEB_BRACKET_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

TAG_AEB_BRACKET_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_AF_AREA_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_AREA_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

2 bytes
(DMC-FZ10)
'0 1' = Spot Mode On
'0 16' = Spot Mode Off
'(other models)
16 = Normal?

TAG_AF_AREA_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_AREA_X_POSITIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_AREA_Y_POSITIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_ASSIST_LAMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Fired
2 = Enabled nut not used
3 = Disabled but required
4 = Disabled and not required

TAG_AF_FOCUS_POSITION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The position of the autofocus target.

TAG_AF_ILLUMINATOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_AF_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_INFO_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_AF_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_AF_INFO_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_AF_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_AF_POINT_POSITION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_AF_POINT_SELECTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

12288 = None (Manual Focus) 12289 = Auto Selected 12290 = Right 12291 = Centre 12292 = Left

TAG_AF_POINT_SELECTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_AF_POINT_USED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

TAG_AF_POINTS_IN_FOCUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_AF_POINTS_IN_FOCUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_AF_POINTS_IN_FOCUS_1D - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_AF_RESPONSE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's digital vari-program setting, as a string.

TAG_AF_RESULT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_AF_TUNE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_AF_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's auto-focus mode, as an uppercase string.

TAG_ALPHA_CHANNELS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ALPHA_IDENTIFIERS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ALPHA_MASK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_ALTERNATE_DUOTONE_COLORS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ALTERNATE_SPOT_COLORS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ALTITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Altitude GPSAltitude 6 6 RATIONAL 1

TAG_ALTITUDE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Altitude reference GPSAltitudeRef 5 5 BYTE 1

TAG_AMBIANCE_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_AMBIENT_INFRARED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_AMBIENT_LIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_AMBIENT_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_AMBIENT_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_AMBIENT_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_AMBIENT_TEMPERATURE_FAHRENHEIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_AMBIENT_TEMPERATURE_FAHRENHEIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_AMBIENT_TEMPERATURE_FAHRENHEIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_ANTI_BLUR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The actual aperture value of lens when the image was taken.

TAG_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_APEX_APERTURE_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_APEX_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_APEX_FILM_SPEED_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_APEX_SHUTTER_SPEED_TIME_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_APP14_FLAGS0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory

The convention for TAG_APP14_FLAGS0 and TAG_APP14_FLAGS1 is that 0 bits are benign. 1 bits in TAG_APP14_FLAGS0 pass information that is possibly useful but not essential for decoding.

TAG_APP14_FLAGS1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory

The convention for TAG_APP14_FLAGS0 and TAG_APP14_FLAGS1 is that 0 bits are benign. 1 bits in TAG_APP14_FLAGS1 pass information essential for decoding.

TAG_APPLE_MULTI_LANGUAGE_PROFILE_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_APPLICATION_NOTES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_APPLICATION_RECORD_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_APPROXIMATE_F_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_APS_C_SIZE_CAPTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_AREA_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Name of the GPS area GPSAreaInformation 28 1C UNDEFINED Any

TAG_ARM_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ARM_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ARTIST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ASPECT_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_AUDIO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Yes
2 = No

TAG_AUDIO_DURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_AUDIO_OUTCUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_AUDIO_SAMPLING_RATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_AUDIO_SAMPLING_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_AUDIO_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_AUTO_BRACKET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_AUTO_BRACKETING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_AUTO_DYNAMIC_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_AUTO_EXPOSURE_BRACKETING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

TAG_AUTO_EXPOSURE_BRACKETING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_AUTO_EXPOSURE_WARNING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_AUTO_FLASH_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The flash compensation, as an array of four integers.

TAG_AUTO_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The type of flash used in the photograph, as a string.

TAG_AUTO_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_AUTO_ISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_AUTO_PORTRAIT_FRAMED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_AUTO_ROTATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_AUTO_SAVE_FILE_PATH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_AUTO_SAVE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_BABY_AGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_BABY_AGE_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_BABY_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_BACKGROUND_COLOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_BACKGROUND_COLOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_BACKGROUND_COLOR_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_BASE_ISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_BATTERY_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_BATTERY_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_BATTERY_VOLTAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_BATTERY_VOLTAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_BATTERY_VOLTAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_BATTERY_VOLTAGE_AVG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_BESTSHOT_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

TAG_BITMAP_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_BITS_PER_CHANNEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

The number of bits per channel.

TAG_BITS_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_BITS_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

When image format is no compression, this value shows the number of bits per component for each pixel.

TAG_BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_BLACK_AND_WHITE_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_BLACK_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_BLACK_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_BLUE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_BLUE_MASK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_BLUE_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_BLUE_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_BLUR_WARNING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_BODY_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_BODY_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_BODY_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

String.

TAG_BORDER_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_BRACKET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_BRACKET_SETTINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_BRACKET_STEP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_BRIGHTNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_BRIGHTNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_BRIGHTNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_BTL_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_BULB_DURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_BURST_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_BURST_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Off
1 = On
2 = Infinite
4 = Unlimited

TAG_BURST_MODE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_BURST_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_BURST_UUID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_BW_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

0 = Off, 1 = On

TAG_BY_LINE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_BY_LINE_TITLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CAMERA_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The color space as set in the camera, as a string.

TAG_CAMERA_ELEVATION_ANGLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_CAMERA_HUE_ADJUSTMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The hue adjustment as set in the camera.

TAG_CAMERA_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_CAMERA_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_CAMERA_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_CAMERA_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CAMERA_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_CAMERA_ORIENTATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_CAMERA_OWNER_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

String.

TAG_CAMERA_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's serial number, as a string.

TAG_CAMERA_SERIAL_NUMBER_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera serial number, as a string.

TAG_CAMERA_SETTINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_CAMERA_SETTINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_CAMERA_SETTINGS_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras.

TAG_CAMERA_SETTINGS_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Alternate Camera Settings Tag.

TAG_CAMERA_SETTINGS_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CAMERA_SHARPENING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's sharpening setting, as an uppercase string.

TAG_CAMERA_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_CAMERA_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_CAMERA_TONE_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's tone compensation setting, as a string.

TAG_CAMERA_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_CAMERA_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_CAMERA_TYPE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_CAMERA_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_CAMERA_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's white balance setting, as an uppercase string.

TAG_CAMERA_WHITE_BALANCE_FINE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's white balance bias setting, as an uint16 array having either one or two elements.

TAG_CAMERA_WHITE_BALANCE_RB_COEFF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The first two numbers are coefficients to multiply red and blue channels according to white balance as set in the camera.

TAG_CANON_CUSTOM_FUNCTIONS_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_FILE_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_FLAGS_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_IMAGE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_IMAGE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_OWNER_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CANON_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CAPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CAPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_CAPTION_DIGEST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_CAPTION_WRITER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CAPTURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Auto 1 = Night-scene 2 = Manual 4 = Multiple

TAG_CATEGORIES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CATEGORY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CCD_BOARD_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_CCD_ISO_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Off 1 = On?

TAG_CCD_SCAN_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_CCD_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_CCD_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_CCD_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_CFA_PATTERN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_CFA_PATTERN_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

There are two definitions for CFA pattern, I don't know the difference...

TAG_CFA_REPEAT_PATTERN_DIM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_CHANNEL_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

The number of channels in the image, including any alpha channels.

TAG_CHANNELS_ROWS_COLUMNS_DEPTH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_CITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_CITY2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_CLEAR_RETOUCH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_CLEAR_RETOUCH_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_CLIPPING_PATH_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_CMDLINE - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_CMM_FLAGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_CMM_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_CODED_CHARACTER_SET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_COLOR_ADJUSTMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_COLOR_ADJUSTMENT_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_COLOR_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_COLOR_BALANCE_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_COMPENSATION_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_COLOR_DATA_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_EFFECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Off
2 = Warm
3 = Cool
4 = Black & White
5 = Sepia

TAG_COLOR_ENCODING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_COLOR_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_COLOR_HALFTONING_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_COLOR_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_INFO_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_MATRIX_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's color mode, as an uppercase string.

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Normal
1 = Natural
2 = Vivid

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

The color mode of the file.

TAG_COLOR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_COLOR_MODE_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_COLOR_SAMPLERS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_COLOR_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Defines Color Space.

TAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's color space setting.

TAG_COLOR_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_COLOR_SPACE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_COLOR_TABLE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_COLOR_TEMP_KELVIN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_COLOR_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_COLOR_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_COLOR_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_COLOR_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_COLOR_TEMPERATURE_BG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COLOR_TEMPERATURE_RG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COLOR_TONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_COLOR_TRANSFER_FUNCTIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_COLOR_TRANSFORM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory

TAG_COLOR_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_COLOUR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

1 = Normal 2 = Black & White 3 = Sepia

TAG_COLOUR_CONTROL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COLOUR_MATRIX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COLOUR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Off

TAG_COLOUR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras 0 = Natural Colour 1 = Black & White 2 = Vivid colour 3 = Solarization 4 = AdobeRGB

TAG_COLOUR_PLANES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_COMMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory

TAG_COMMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDirectory

TAG_COMMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDirectory

This value does not apply to a particular standard.

TAG_COMPONENT_DATA_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

the first of a possible 4 color components.

TAG_COMPONENT_DATA_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

the first of a possible 4 color components.

TAG_COMPONENT_DATA_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

the second of a possible 4 color components.

TAG_COMPONENT_DATA_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

the second of a possible 4 color components.

TAG_COMPONENT_DATA_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

the third of a possible 4 color components.

TAG_COMPONENT_DATA_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

the third of a possible 4 color components.

TAG_COMPONENT_DATA_4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

the fourth of a possible 4 color components.

TAG_COMPONENT_DATA_4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

the fourth of a possible 4 color components.

TAG_COMPONENTS_CONFIGURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_COMPRESSED_AVERAGE_BITS_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Average (rough estimate) compression level in JPEG bits per pixel.

TAG_COMPRESSED_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras.

TAG_COMPRESSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_COMPRESSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_COMPRESSION_RATIO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COMPRESSION_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

TAG_COMPRESSION_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

TAG_COMPRESSION_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_CONTACT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CONTENT_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_CONTENT_LOCATION_CODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CONTENT_LOCATION_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CONTINUOUS_DRIVE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Single Frame or Timer Mode 1 = Continuous

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Normal 1 = High 65535 = Low

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = -1 1 = Normal 2 = +1

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the direction of contrast processing applied by the camera when the image was shot.

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Normal

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Normal 1 = Low 2 = High

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_CONTRAST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_CONTRAST_CURVE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_CONTRAST_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

(this decoding seems to work for some models such as the LC1, LX2, FZ7, FZ8, FZ18 and FZ50, but may not be correct for other models such as the FX10, G1, L1, L10 and LC80)
0x0 = Normal
0x1 = Low
0x2 = High
0x6 = Medium Low
0x7 = Medium High
0x100 = Low
0x110 = Normal
0x120 = High
(these values are used by the GF1)
0 = -2
1 = -1
2 = Normal
3 = +1
4 = +2
7 = Nature (Color Film)
12 = Smooth (Color Film) or Pure (My Color)
17 = Dynamic (B&W Film)
22 = Smooth (B&W Film)
27 = Dynamic (Color Film)
32 = Vibrant (Color Film) or Expressive (My Color)
33 = Elegant (My Color)
37 = Nostalgic (Color Film)
41 = Dynamic Art (My Color)
42 = Retro (My Color)

TAG_CONTROL_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_CONTROLLER_BOARD_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_CONVERSION_LENS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_CONVERSION_LENS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Off
2 = Wide
3 = Telephoto
4 = Macro

TAG_CONVERTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_COPYRIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory

TAG_COPYRIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_COPYRIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_COPYRIGHT_NOTICE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CORING_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_COUNT_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_COUNTRY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_COUNTRY_OR_PRIMARY_LOCATION_CODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_COUNTRY_OR_PRIMARY_LOCATION_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CREDIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_CROP_HIGH_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_CROP_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CRW_PARAM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CUSTOM_FUNCTIONS_1D_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CUSTOM_FUNCTIONS_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CUSTOM_PICTURE_STYLE_FILE_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_CUSTOM_RENDERED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the use of special processing on image data, such as rendering geared to output.

TAG_DATA_DUMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Added during merge of Type2 & Type3.

TAG_DATA_DUMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_DATA_DUMP_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_DATA_DUMP_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_DATA_PRECISION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

This is in bits/sample, usually 8 (12 and 16 not supported by most software).

TAG_DATA_PRECISION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

This is in bits/sample, usually 8 (12 and 16 not supported by most software).

TAG_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_DATE_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_DATE_SENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_DATE_STAMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Date and time GPSDateStamp 29 1D ASCII 11

TAG_DATE_STAMP_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_DATE_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_DATE_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_DATE_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_DATE_TIME_STAMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_DATETIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_DATETIME_DIGITIZED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_DATETIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_DAY_OF_WEEK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_DAY_OF_WEEK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_DAYLIGHT_SAVINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

(String).

TAG_DCT_ENCODE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory

TAG_DEC_SWITCH_POSITION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_DELAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

TAG_DELETED_IMAGE_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_DEST_BEARING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Bearing of destination GPSDestBearing 24 18 RATIONAL 1

TAG_DEST_BEARING_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for bearing of destination GPSDestBearingRef 23 17 ASCII 2

TAG_DEST_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Distance to destination GPSDestDistance 26 1A RATIONAL 1

TAG_DEST_DISTANCE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for distance to destination GPSDestDistanceRef 25 19 ASCII 2

TAG_DEST_LATITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Latitude of destination GPSDestLatitude 20 14 RATIONAL 3

TAG_DEST_LATITUDE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for latitude of destination GPSDestLatitudeRef 19 13 ASCII 2

TAG_DEST_LONGITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Longitude of destination GPSDestLongitude 22 16 RATIONAL 3

TAG_DEST_LONGITUDE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for longitude of destination GPSDestLongitudeRef 21 15 ASCII 2

TAG_DESTINATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_DEVELOPMENT_DYNAMIC_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_DEVICE_ATTR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_DEVICE_MAKE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_DEVICE_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_DEVICE_SETTING_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates information on the picture-taking conditions of a particular camera model.

TAG_DIFFERENTIAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Whether differential correction is applied GPSDifferential 30 1E SHORT 1

TAG_DIGITAL_DATE_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_DIGITAL_TIME_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_DIGITAL_VARI_PROGRAM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's digital vari-program setting, as a string.

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = No Digital Zoom 1 = 2x 2 = 4x

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The amount of digital zoom used.

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Zoom Factor (0 or 1 = normal)

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

(0 = Off)

TAG_DIGITAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_DIGITAL_ZOOM_ON - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_DIGITAL_ZOOM_RATIO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the digital zoom ratio when the image was shot.

TAG_DIRECTORY_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_DISPLAY_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_DISPLAY_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_DISPLAY_INFO_OBSOLETE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_DISPOSAL_METHOD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

TAG_DISTORTION_CORR_PARAMS_PRESENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_DISTORTION_CORRECTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_DOCUMENT_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_DOP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Measurement precision GPSDOP 11 B RATIONAL 1

TAG_DRIVE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_DUOTONE_HALFTONING_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_DUOTONE_IMAGE_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_DUOTONE_TRANSFER_FUNCTIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_DUST_REMOVAL_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_DYNAMIC_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_DYNAMIC_RANGE_OPTIMISER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_DYNAMIC_RANGE_OPTIMIZER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_DYNAMIC_RANGE_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_EASY_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_EASY_SHOOTING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Full Auto 1 = Manual 2 = Landscape 3 = Fast Shutter 4 = Slow Shutter 5 = Night 6 = Black & White 7 = Sepia 8 = Portrait 9 = Sports 10 = Macro / Close-Up 11 = Pan Focus

TAG_EDIT_STATUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_EDITORIAL_UPDATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_EFFECTIVE_BLACK_AND_WHITE_VALUES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_EFFECTS_VISIBLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ENHANCEMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Off

TAG_ENVELOPE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ENVELOPE_PRIORITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ENVELOPE_RECORD_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_EPS_OPTIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_EQUIPMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EQUIPMENT_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_EVENT_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_EVENT_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_EVENT_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_EVENT_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_EXIF_DATA_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_EXIF_DATA_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_EXIF_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXIF_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXIF_SUB_IFD_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory

This tag is a pointer to the Exif SubIFD.

TAG_EXIF_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXIF_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

Panasonic Exif Version

TAG_EXPIRATION_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_EXPIRATION_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_EXPOSURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_EXPOSURE_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXPOSURE_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_EXPOSURE_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_EXPOSURE_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_EXPOSURE_DIFFERENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The exposure difference, as an array of four integers.

TAG_EXPOSURE_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXPOSURE_INDEX_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Easy Shooting (See Easy Shooting Mode) 1 = Program 2 = Tv-Priority 3 = Av-Priority 4 = Manual 5 = A-DEP

TAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the exposure mode set when the image was shot.

TAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_EXPOSURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_EXPOSURE_PROGRAM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Exposure program that the camera used when image was taken. '1' means manual control, '2' program normal, '3' aperture priority, '4' shutter priority, '5' program creative (slow program), '6' program action (high-speed program), '7' portrait mode, '8' landscape mode.

TAG_EXPOSURE_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The number of total shutter releases.

TAG_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Exposure time (reciprocal of shutter speed).

TAG_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_EXPOSURE_TUNING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_EXR_AUTO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_EXR_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_EXTENDER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_EXTENDER_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_EXTENDER_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_EXTENDER_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_EXTENSION_CODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory

TAG_EXTERNAL_FLASH_AE1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_AE1_0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_AE2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_AE2_0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_BOUNCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_G_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_FLASH_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_EXTERNAL_SENSOR_BRIGHTNESS_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_EXTRA_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_EXTRA_SAMPLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_F_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_F_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_FACE_DETECT_ARRAY_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FACE_DETECT_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FACE_DETECTION_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

Integer (16Bit) Indexes:
0 Number Face Positions (maybe less than Faces Detected)
1-4 Face Position 1
5-8 Face Position 2
and so on

The four Integers are interpreted as follows:
(XYWH) X,Y Center of Face, (W,H) Width and Height
All values are in respect to double the size of the thumbnail image

TAG_FACE_POSITIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

Left, top, right and bottom coordinates in full-sized image for each face detected.

TAG_FACE_REC_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FACE_RECOGNITION_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

Byte Indexes:
0 Int (2 Byte) Number of Recognized Faces
4 String(20 Byte) Recognized Face 1 Name
24 4 Int (8 Byte) Recognized Face 1 Position (Same Format as Face Detection)
32 String(20 Byte) Recognized Face 1 Age
52 String(20 Byte) Recognized Face 2 Name
72 4 Int (8 Byte) Recognized Face 2 Position (Same Format as Face Detection)
80 String(20 Byte) Recognized Face 2 Age

And so on

The four Integers are interpreted as follows:
(XYWH) X,Y Center of Face, (W,H) Width and Height
All values are in respect to double the size of the thumbnail image

TAG_FACES_DETECTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FACES_DETECTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FIELD_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FILE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_FILE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FILE_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_FILE_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FILE_MODIFIED_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory

TAG_FILE_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory

TAG_FILE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_FILE_NUMBER_MEMORY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FILE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDescriptor

TAG_FILE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory

TAG_FILE_SOURCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FILE_SOURCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FILE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_FILL_LIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_FILL_ORDER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

1 = Normal 2 = Reversed

TAG_FILM_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FILM_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Off

TAG_FILTER_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FILTER_METHOD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_FINE_PIX_COLOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FIRMWARE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FIRMWARE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_FIRMWARE_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_FIRMWARE_REVISION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Values observed - 0200 (D70) - 0200 (D1X)

TAG_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_FIXTURE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_FLASH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

0x0 = 0000000 = No Flash 0x1 = 0000001 = Fired 0x5 = 0000101 = Fired, Return not detected 0x7 = 0000111 = Fired, Return detected 0x9 = 0001001 = On 0xd = 0001101 = On, Return not detected 0xf = 0001111 = On, Return detected 0x10 = 0010000 = Off 0x18 = 0011000 = Auto, Did not fire 0x19 = 0011001 = Auto, Fired 0x1d = 0011101 = Auto, Fired, Return not detected 0x1f = 0011111 = Auto, Fired, Return detected 0x20 = 0100000 = No flash function 0x41 = 1000001 = Fired, Red-eye reduction 0x45 = 1000101 = Fired, Red-eye reduction, Return not detected 0x47 = 1000111 = Fired, Red-eye reduction, Return detected 0x49 = 1001001 = On, Red-eye reduction 0x4d = 1001101 = On, Red-eye reduction, Return not detected 0x4f = 1001111 = On, Red-eye reduction, Return detected 0x59 = 1011001 = Auto, Fired, Red-eye reduction 0x5d = 1011101 = Auto, Fired, Red-eye reduction, Return not detected 0x5f = 1011111 = Auto, Fired, Red-eye reduction, Return detected 6543210 (positions) This is a bitmask. 0 = flash fired 1 = return detected 2 = return able to be detected 3 = unknown 4 = auto used 5 = unknown 6 = red eye reduction used

TAG_FLASH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_FLASH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_FLASH_ACTIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Flash Did Not Fire 1 = Flash Fired

TAG_FLASH_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

The value of this tag may be translated into a flash bias value, in EV. 0xffc0 = -2 EV 0xffcc = -1.67 EV 0xffd0 = -1.5 EV 0xffd4 = -1.33 EV 0xffe0 = -1 EV 0xffec = -0.67 EV 0xfff0 = -0.5 EV 0xfff4 = -0.33 EV 0x0000 = 0 EV 0x000c = 0.33 EV 0x0010 = 0.5 EV 0x0014 = 0.67 EV 0x0020 = 1 EV 0x002c = 1.33 EV 0x0030 = 1.5 EV 0x0034 = 1.67 EV 0x0040 = 2 EV

TAG_FLASH_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FLASH_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FLASH_BRACKET_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The flash bracket compensation, as an array of four integers.

TAG_FLASH_CHARGE_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FLASH_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FLASH_CURTAIN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FLASH_DETAILS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_FLASH_DEVICE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FLASH_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Off

TAG_FLASH_ENERGY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FLASH_ENERGY_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FLASH_EV - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FLASH_EXPOSURE_BRACKETING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_FLASH_EXPOSURE_COMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FLASH_EXPOSURE_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The flash exposure compensation, as an array of four integers.

TAG_FLASH_FIRED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_FLASH_FIRED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FLASH_FIRED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_FLASH_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_FLASH_GUIDE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_FLASH_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_FLASH_INTENSITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_FLASH_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Flash Not Fired 1 = Auto 2 = On 3 = Red Eye Reduction 4 = Slow Synchro 5 = Auto + Red Eye Reduction 6 = On + Red Eye Reduction 16 = External Flash

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Flash mode, as a string.

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

1 = Auto 2 = Flash on 4 = Flash off 6 = Red-eye Reduction

TAG_FLASH_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_FLASH_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_FLASH_OUTPUT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_FLASH_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_FLASH_STATUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_FLASH_SYNC_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's flash setting, as an uppercase string.

TAG_FLASH_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_FLASH_USED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Whether the flash was used in this image.

TAG_FLASH_WARNING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = No
1 = Yes

TAG_FLASHPIX_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FLICKER_REDUCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_FNUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The actual F-number(F-stop) of lens when the image was taken.

TAG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

Units are tenths of a millimetre

TAG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Focal length of lens used to take image.

TAG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FOCAL_LENGTH_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_FOCAL_PLANE_DIAGONAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_FOCAL_PLANE_DIAGONAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Unit of FocalPlaneXResolution/FocalPlaneYResolution. '1' means no-unit, '2' inch, '3' centimeter.

TAG_FOCAL_PLANE_X_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FOCAL_PLANE_X_RESOLUTION_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FOCAL_PLANE_Y_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FOCAL_PLANE_Y_RESOLUTION_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_FOCAL_UNITS_PER_MM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_FOCUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_FOCUS_AREA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FOCUS_CONTINUOUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_FOCUS_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FOCUS_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FOCUS_DISTANCE_LOWER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_FOCUS_DISTANCE_UPPER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_FOCUS_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FOCUS_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Auto
2 = Manual
4 = Auto, Focus Button
5 = Auto, Continuous

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

2 = Custom 3 = Auto

TAG_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FOCUS_MODE_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = One-Shot 1 = AI Servo 2 = AI Focus 3 = Manual Focus 4 = Single 5 = Continuous 6 = Manual Focus

TAG_FOCUS_MODE_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Normal 1 = Macro

TAG_FOCUS_MODE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Focus Mode: Single 1 = Focus Mode: Continuous

TAG_FOCUS_MODE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

1 = Fixation 6 = Multi-Area Auto Focus

TAG_FOCUS_MODE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_FOCUS_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FOCUS_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_FOCUS_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_FOCUS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Manual 1 = Auto 3 = Close-up (Macro) 8 = Locked (Pan Mode)

TAG_FOCUS_WARNING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FOCUSING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_FOLDER_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_FRAME_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_FULL_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_GAIN_CONTROL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the degree of overall image gain adjustment.

TAG_GAMMA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Rational64u.

TAG_GAMMA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_GAMMA_BLUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_GAMMA_GREEN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_GAMMA_RED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_GE_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_GIF_FORMAT_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_GLOBAL_ALTITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_GLOBAL_ANGLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_GPS_INFO_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory

This tag is a pointer to the Exif GPS IFD.

TAG_GRAYSCALE_AND_MULTICHANNEL_HALFTONING_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_GRAYSCALE_AND_MULTICHANNEL_TRANSFER_FUNCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_GREEN_MASK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_GREEN_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_GREEN_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_GRID_AND_GUIDES_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_H_POSITIONING_ERROR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Horizontal positioning errors GPSHPositioningError 31 1F RATIONAL 1

TAG_HAS_GLOBAL_COLOR_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_HAS_LOCAL_COLOUR_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_HDR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_HDR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_HDR_IMAGE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_HDR_TONING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_HEADER_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_HEADLINE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_HIGH_ISO_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_HIGH_ISO_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's high ISO noise reduction setting, as an integer.

TAG_HIGH_ISO_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_HIGH_ISO_NOISE_REDUCTION_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_HIGHLIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_HOST_COMPUTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_HUMIDITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ICC_PROFILE_BYTES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ICC_PROFILE_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_ICC_UNTAGGED_PROFILE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_ADJUSTMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_IMAGE_ADJUSTMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's image adjustment setting, as a string.

TAG_IMAGE_AUTHENTICATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_IMAGE_BOUNDARY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Defines the photo corner coordinates, in 8 bytes.

TAG_IMAGE_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_IMAGE_DATA_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_IMAGE_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

The image's height.

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

The image's height.

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Epson cameras Units = pixels

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

The height of the image in pixels.

TAG_IMAGE_HISTORY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IMAGE_ID_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_IMAGE_MODE_FOR_RAW_FORMAT_FILES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IMAGE_OPTIMISATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's image optimisation, as a string.

TAG_IMAGE_ORIENTATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_IMAGE_PROCESSING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_IMAGE_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_IMAGE_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_IMAGE_QUALITY_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras. 0 = Raw 1 = Super Fine 2 = Fine 3 = Standard 4 = Extra Fine

TAG_IMAGE_QUALITY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Not 100% sure about this tag.

TAG_IMAGE_READY_7_ROLLOVER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_DATA_SETS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_ROLLOVER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_SAVE_LAYER_SETTINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_SELECTED_STATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_VARIABLES_XML - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_READY_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Large 1 = Medium 2 = Small

TAG_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = 640 x 480 pixels 4 = 1600 x 1200 pixels 5 = 2048 x 1536 pixels 20 = 2288 x 1712 pixels 21 = 2592 x 1944 pixels 22 = 2304 x 1728 pixels 36 = 3008 x 2008 pixels

TAG_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_IMAGE_STABILISATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's digital vari-program setting, as a string.

TAG_IMAGE_STABILISATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_IMAGE_STABILIZATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

2 = On, Mode 1
3 = Off
4 = On, Mode 2

TAG_IMAGE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_IMAGE_UNIQUE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_IMAGE_UNIQUE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_IMAGE_UNIQUE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates an identifier assigned uniquely to each image.

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDescriptor

The image's width.

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

The image's width.

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Epson cameras Units = pixels

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

The width of the image in pixels.

TAG_IMG_DIRECTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Direction of image GPSImgDirection 17 11 RATIONAL 1

TAG_IMG_DIRECTION_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for direction of image GPSImgDirectionRef 16 10 ASCII 2

TAG_IMPORTANT_COLOUR_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_INDEXED_COLOR_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_INDEXED_COLOR_TABLE_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_INFINITY_LENS_STEP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INFRARED_ILLUMINATOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_INTELLIGENT_AUTO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_INTELLIGENT_D_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_INTELLIGENT_EXPOSURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Off
1 = Low
2 = Standard
3 = High

TAG_INTELLIGENT_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Off
2 = Auto
3 = On

TAG_INTENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_INTER_COLOR_PROFILE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_INTERLACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_INTERLACE_METHOD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_INTERNAL_FLASH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_INTERNAL_FLASH_AE1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INTERNAL_FLASH_AE1_0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INTERNAL_FLASH_AE2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INTERNAL_FLASH_AE2_0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INTERNAL_FLASH_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_INTERNAL_ND_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_INTERNAL_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_INTERNAL_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

this number is unique, and contains the date of manufacture, but is not the same as the number printed on the camera body

TAG_INTERNAL_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_INTEROP_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_INTEROP_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory

This tag is a pointer to the Exif Interop IFD.

TAG_INTEROP_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_INTERVAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_INTERVAL_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_INTERVAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_IPTC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_IPTC_NAA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_IS_COLOR_TABLE_SORTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_IS_COLOR_TABLE_SORTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_IS_INTERLACED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_ISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Check ISOSpeedRatings EXIF tag for ISO Speed 15 = Auto ISO 16 = ISO 50 17 = ISO 100 18 = ISO 200 19 = ISO 400

TAG_ISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_ISO_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Values observed - 0 250 - 0 400

TAG_ISO_EQUIVALENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ISO_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_ISO_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's ISO mode, as an uppercase string.

TAG_ISO_REQUESTED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The requested ISO value, as an array of two integers.

TAG_ISO_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

3 = 50 4 = 64 6 = 100 9 = 200

TAG_ISO_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_ISO_SETTING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_ISO_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ISO_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

10 = ISO 100 16 = ISO 200 100 = ISO 100 200 = ISO 200

TAG_ISO_SPEED_LATITUDE_YYY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ISO_SPEED_LATITUDE_ZZZ - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ISO_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_ITERATION_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDirectory

TAG_JOB_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_JPEG_AC_TABLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_DC_TABLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_LOSSLESS_PREDICTORS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_POINT_TRANSFORMS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_PROC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_Q_TABLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

1 = Standard Quality 2 = High Quality 3 = Super High Quality

TAG_JPEG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_JPEG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_JPEG_RESTART_INTERVAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JPEG_TABLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_JUMP_TO_XPEP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_KEYWORDS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_KODAK_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_LABEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_LANDMARK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LANGUAGE_IDENTIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_LAST_FILE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_LAST_MODIFICATION_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_LATERAL_CHROMATIC_ABERRATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_LATITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Latitude GPSLatitude 2 2 RATIONAL 3

TAG_LATITUDE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

North or South Latitude GPSLatitudeRef 1 1 ASCII 2

TAG_LAYER_COMPS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LAYER_GROUPS_ENABLED_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LAYER_SELECTION_IDS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LAYER_STATE_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LAYERS_GROUP_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LEFT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_LENS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_LENS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

A pair of focal/max-fstop values that describe the lens used.

TAG_LENS_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_LENS_DISTORTION_PARAMETERS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_LENS_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_LENS_FIRMWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LENS_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_LENS_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_LENS_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_LENS_MAKE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

String.

TAG_LENS_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_LENS_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

String.

TAG_LENS_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_LENS_MOUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_LENS_PROPERTIES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_LENS_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_LENS_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

String.

TAG_LENS_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_LENS_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LENS_SPEC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_LENS_SPEC_FEATURES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_LENS_SPECIFICATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

An array of four Rational64u numbers giving focal and aperture ranges.

TAG_LENS_STOPS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Lens stops, as an array of four integers.

TAG_LENS_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_LENS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_LENS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_LENS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The type of lens used, as a byte.

TAG_LENS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_LENS_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LENS_TYPE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_LIGHT_CONDITION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_LIGHT_SOURCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Deprecated.
use com.drew.metadata.exif.ExifDirectoryBase#TAG_WHITE_BALANCE instead.

TAG_LIGHT_SOURCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The lighting type, as a string.

TAG_LIGHT_SOURCE_SPECIAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_LIGHT_VALUE_CENTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_LIGHT_VALUE_PERIPHERY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_LIGHTING_OPTIMIZER_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_LIGHTROOM_WORKFLOW - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_LINEARIZATION_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_LINKED_PROFILE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_LIVE_PHOTO_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_LOCAL_CAPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_LOCAL_COLOUR_TABLE_BITS_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_LOCATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LONG_EXPOSURE_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_LONG_EXPOSURE_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_LONG_EXPOSURE_NOISE_REDUCTION_OR_FOCUS_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

(FocusMode for RX100) 0 = Manual 2 = AF-S 3 = AF-C 5 = Semi-manual 6 = Direct Manual Focus (LongExposureNoiseReduction for other models) 0 = Off 1 = On 2 = On 2 65535 = n/a

TAG_LONG_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_LONGITUDE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Longitude GPSLongitude 4 4 RATIONAL 3

TAG_LONGITUDE_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

East or West Longitude GPSLongitudeRef 3 3 ASCII 2

TAG_M16_C_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_MAC_NSPRINTINFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_MAC_PRINT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_MACRO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MACRO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_MACRO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MACRO_FOCUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_MACRO_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

1 = Macro 2 = Normal

TAG_MACRO_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_MACRO_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

0 = Normal (Not Macro) 1 = Macro

TAG_MACRO_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = On
2 = Off

TAG_MAIN_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_MAKE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_MAKERNOTE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag holds the Exif Makernote.

TAG_MAKERNOTE_DATA_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory

TAG_MAKERNOTE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_MAKERNOTE_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_MAKERNOTE_PUBLIC_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_MAKERNOTE_PUBLIC_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_MAKERNOTE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_MAKERNOTE_THUMB_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory

TAG_MAKERNOTE_THUMB_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory

TAG_MAKERNOTE_THUMB_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory

TAG_MAKERNOTE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MAKERNOTE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras.

TAG_MAKERNOTE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_MAKERNOTE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_MANUAL_FLASH_OUTPUT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_MANUAL_FOCUS_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Added during merge of Type2 & Type3.

TAG_MANUAL_FOCUS_DISTANCE_OR_FACE_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_MAP_DATUM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Geodetic survey data used GPSMapDatum 18 12 ASCII Any

TAG_MASTER_DOCUMENT_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_MAX_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_MAX_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Maximum aperture value of lens.

TAG_MAX_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_MAX_APERTURE_AT_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_MAX_APERTURE_AT_MAX_FOCAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MAX_APERTURE_AT_MAX_FOCAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_MAX_APERTURE_AT_MIN_FOCAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MAX_APERTURE_AT_MIN_FOCAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_MAX_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MAX_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_MAX_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_MEASURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

GPS measurement mode GPSMeasureMode 10 A ASCII 2

TAG_MEASURED_COLOR_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_MEASURED_EV - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_MEASURED_EV_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_MEASURED_LV - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_MEASUREMENT_SCALE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

3 = Evaluative 4 = Partial 5 = Centre Weighted

TAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Exposure metering method. '0' means unknown, '1' average, '2' center weighted average, '3' spot, '4' multi-spot, '5' multi-segment, '6' partial, '255' other.

TAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_MGH_XFORM - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_MIN_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_MIN_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_MIN_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_MIN_SAMPLE_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_MINOLTA_MAKERNOTE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MINOLTA_THUMBNAIL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Length of thumbnail in bytes.

TAG_MINOLTA_THUMBNAIL_OFFSET_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Used by Konica / Minolta cameras.

TAG_MINOLTA_THUMBNAIL_OFFSET_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Alternate Thumbnail Offset.

TAG_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_MODEL_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_MODIFIED_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_MONTH_DAY_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_MOON_PHASE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_MOON_PHASE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_MOON_PHASE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_MOTION_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_MOTION_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_MOVIE_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_MULTI_BURST_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MULTI_BURST_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MULTI_BURST_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MULTI_EXPOSURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_MULTI_FRAME_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_MY_COLORS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_ND_FILTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_NEAR_LENS_STEP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_NEF_BIT_DEPTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_NEF_COMPRESSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The NEF (RAW) compression.

TAG_NEF_THUMBNAIL_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The NEF (RAW) thumbnail size, as an integer array with two items representing [width,height].

TAG_NEW_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The new subfile type tag. 0 = Full-resolution Image 1 = Reduced-resolution image 2 = Single page of multi-page image 3 = Single page of multi-page reduced-resolution image 4 = Transparency mask 5 = Transparency mask of reduced-resolution image 6 = Transparency mask of multi-page image 7 = Transparency mask of reduced-resolution multi-page image

TAG_NIKON_CAPTURE_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Data about changes set by Nikon Capture Editor.

TAG_NIKON_CAPTURE_OFFSETS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_NIKON_CAPTURE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_NIKON_SCAN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_NO_PRINT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_NOISE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The type of noise reduction, as a string.

TAG_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_NOISE_REDUCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

0 = Standard
1 = Low (-1)
2 = High (+1)
3 = Lowest (-2)
4 = Highest (+2)

TAG_NUM_AF_POINTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_NUMBER_OF_COMPONENTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

Usually 1 = grey scaled, 3 = color YcbCr or YIQ, 4 = color CMYK Each component TAG_COMPONENT_DATA_[1-4], has the following meaning: component Id(1byte)(1 = Y, 2 = Cb, 3 = Cr, 4 = I, 5 = Q), sampling factors (1byte) (bit 0-3 vertical., 4-7 horizontal.), quantization table number (1 byte).

TAG_NUMBER_OF_TABLES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TAG_OBJECT_ATTRIBUTE_REFERENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_CYCLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_OBJECT_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

Units are millimetres

TAG_OBJECT_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_PREVIEW_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_PREVIEW_FILE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_PREVIEW_FILE_FORMAT_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OBJECT_TYPE_REFERENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OLD_COLORTABLE - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_OLD_MGH_XFORM - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_OLD_SURF_GEOM - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_OLD_USEREALRAS - Static variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

TAG_OLYMPUS_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_OLYMPUS_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_ONE_TOUCH_WB - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_ONION_SKINS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_OPTICAL_ZOOM_CODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_OPTICAL_ZOOM_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Standard
2 = Extended

TAG_OPTICAL_ZOOM_ON - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_OPTO_ELECTRIC_CONVERSION_FUNCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Indicates the Opto-Electric Conversion Function (OECF) specified in ISO 14524.

TAG_ORDER_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_ORIENTATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_ORIGIN_PATH_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_ORIGINAL_DECISION_DATA_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_ORIGINAL_MANUFACTURER_MODEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

A string.

TAG_ORIGINAL_TRANSMISSION_REFERENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_ORIGINATING_PROGRAM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_OWNER_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_PADDING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PAGE_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PAGE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PALETTE_COLOUR_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_PALETTE_HAS_TRANSPARENCY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_PALETTE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_PANASONIC_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_PANASONIC_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_PANASONIC_TITLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PANASONIC_TITLE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PANORAMA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_PANORAMA_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_PANORAMA_DIRECTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.Panorama

TAG_PANORAMA_FRAME_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.Panorama

TAG_PARALLAX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_PATH_SELECTION_STATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PERSONAL_FUNCTION_VALUES_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_PERSONAL_FUNCTIONS_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_PEX_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_PHOTO_EFFECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_PHOTO_STYLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_PHOTOMETRIC_INTERPRETATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Shows the color space of the image data components. 0 = WhiteIsZero 1 = BlackIsZero 2 = RGB 3 = RGB Palette 4 = Transparency Mask 5 = CMYK 6 = YCbCr 8 = CIELab 9 = ICCLab 10 = ITULab 32803 = Color Filter Array 32844 = Pixar LogL 32845 = Pixar LogLuv 34892 = Linear Raw

TAG_PHOTOSHOP_SETTINGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PICT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PICT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_PICTURE_CONTROL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_PICTURE_EFFECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_PICTURE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_PITCH_ANGLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_PIXEL_ASPECT_RATIO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

TAG_PIXEL_ASPECT_RATIO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PIXELS_PER_UNIT_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_PIXELS_PER_UNIT_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_PLANAR_CONFIGURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

When image format is no compression YCbCr, this value shows byte aligns of YCbCr data.

TAG_PLATFORM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_POWER_UP_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_PRE_CAPTURE_FRAMES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PREDICTOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PRESSURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PREVIEW_IFD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Preview to another IFD (?)

TAG_PREVIEW_IMAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PREVIEW_IMAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_PREVIEW_IMAGE_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_PREVIEW_IMAGE_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PREVIEW_IMAGE_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_PREVIEW_IMAGE_START - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PREVIEW_IMAGE_VALID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_PREVIEW_THUMBNAIL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

Alternate thumbnail offset

TAG_PRIMARY_AF_POINT_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_PRIMARY_AF_POINT_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_PRIMARY_CHROMATICITIES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PRINT_FLAGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PRINT_FLAGS_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

See PIM specification here: http://www.ozhiker.com/electronics/pjmt/jpeg_info/pim.html

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

See the PIM specification here: http://www.ozhiker.com/electronics/pjmt/jpeg_info/pim.html

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

Info at http://www.ozhiker.com/electronics/pjmt/jpeg_info/pim.html

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

See Print Image Matching for specification.

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_PRINT_IMAGE_MATCHING_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_PRINT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PRINT_INFO_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PRINT_SCALE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PRINT_STYLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_PROCESSING_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_PROCESSING_METHOD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Name of the method used for location finding GPSProcessingMethod 27 1B UNDEFINED Any

TAG_PRODUCT_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_PROFILE_BYTE_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROFILE_CLASS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROFILE_CONNECTION_SPACE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROFILE_CREATOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROFILE_DATETIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROFILE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_PROGRAM_ISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_PROGRAM_SHIFT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's program shift setting, as an array of four integers.

TAG_PROGRAM_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_PROPRIETARY_THUMBNAIL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory

TAG_PROVINCE_OR_STATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

2 = Normal 3 = Fine 5 = Superfine

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

3 = Fine

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_QUALITY_AND_FILE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's quality setting, as an uppercase string.

TAG_QUALITY_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Good 1 = Better 2 = Best

TAG_QUALITY_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

1 = Fine 2 = Super Fine

TAG_QUALITY_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

2 = High
3 = Normal
6 = Very High
7 = Raw
9 = Motion Picture

TAG_QUICK_MASK_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_QUICK_SHOT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_RASTERIZED_CAPTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_RATING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RATING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_RATING_PERCENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RAW_DATA_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_RAW_DEVELOPMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_RAW_DEVELOPMENT_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_RAW_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_RECOGNIZED_FACE_FLAGS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_RECOMMENDED_EXPOSURE_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RECORD_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_RECORD_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

2 = Normal Mode

TAG_RECORD_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Normal
2 = Portrait
3 = Scenery
4 = Sports
5 = Night Portrait
6 = Program
7 = Aperture Priority
8 = Shutter Priority
9 = Macro
10= Spot
11= Manual
12= Movie Preview
13= Panning
14= Simple
15= Color Effects
16= Self Portrait
17= Economy
18= Fireworks
19= Party
20= Snow
21= Night Scenery
22= Food
23= Baby
24= Soft Skin
25= Candlelight
26= Starry Night
27= High Sensitivity
28= Panorama Assist
29= Underwater
30= Beach
31= Aerial Photo
32= Sunset
33= Pet
34= Intelligent ISO
35= Clipboard
36= High Speed Continuous Shooting
37= Intelligent Auto
39= Multi-aspect
41= Transform
42= Flash Burst
43= Pin Hole
44= Film Grain
45= My Color
46= Photo Frame
51= HDR

TAG_RECORD_SHUTTER_RELEASE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_RECORDING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_RED_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_RED_MASK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_RED_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_RED_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_REFERENCE_BLACK_WHITE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_REFERENCE_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_REFERENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_REFERENCE_SERVICE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_RELATED_IMAGE_FILE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RELATED_IMAGE_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RELATED_IMAGE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RELATED_SOUND_FILE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RELEASE_DATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_RELEASE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_RELEASE_MODE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_RELEASE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_RENDERING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_RENDERING_INTENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_RESAVED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_RESOLUTION_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_RESOLUTION_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_RESOLUTION_UNIT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_RESX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

TAG_RESY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

TAG_RETOUCH_HISTORY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_RICOH_CAMERA_INFO_MAKERNOTE_SUB_IFD_POINTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory

TAG_ROLL_ANGLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_ROTATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = 0 DG
3 = 180 DG
6 = 90 DG
8 = 270 DG

TAG_ROWS_PER_STRIP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The raster is codified by a single block of data holding this many rows.

TAG_RUN_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

TAG_SAMPLE_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SAMPLES_PER_PIXEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Each pixel is composed of this many samples.

TAG_SANYO_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SANYO_THUMBNAIL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SATELLITES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

GPS satellites used for measurement GPSSatellites 8 8 ASCII Any

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Normal 1 = High 65535 = Low

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = -1 1 = Normal 2 = +1

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the direction of saturation processing applied by the camera when the image was shot.

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The saturation level, as a signed integer.

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Normal 1 = Low 2 = High

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_SATURATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SATURATION_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's saturation level, as a string.

TAG_SCENE_AREA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SCENE_ASSIST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_SCENE_CAPTURE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the type of scene that was shot.

TAG_SCENE_DETECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SCENE_DETECT_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SCENE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's scene mode, as a string.

TAG_SCENE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SCENE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SCENE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SCENE_SELECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SCENE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SECURITY_CLASSIFICATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SEED_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_SELF_TIMER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

1 = Off?

TAG_SELF_TIMER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Off
2 = 10 s
3 = 2 s

TAG_SELF_TIMER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SELF_TIMER_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_SELF_TIMER_DELAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_SELF_TIMER_MODE_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SENSING_METHOD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SENSITIVITY_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Applies to ISO tag. 0 = Unknown 1 = Standard Output Sensitivity 2 = Recommended Exposure Index 3 = ISO Speed 4 = Standard Output Sensitivity and Recommended Exposure Index 5 = Standard Output Sensitivity and ISO Speed 6 = Recommended Exposure Index and ISO Speed 7 = Standard Output Sensitivity, Recommended Exposure Index and ISO Speed

TAG_SENSOR_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SENSOR_PIXEL_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The sensor pixel size, as a pair of rational numbers.

TAG_SENSOR_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SEQUENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_SEQUENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_SEQUENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SEQUENCE_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SEQUENCE_SHOT_INTERVAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SEQUENTIAL_SHOT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SERIAL_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_SERIAL_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_SERIAL_NUMBER_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SERIAL_NUMBER_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SERIAL_NUMBER_FORMAT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SERVICE_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SHADING_COMPENSATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SHADOW - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

0 = Normal 1 = High 65535 = Low

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = -1 1 = Normal 2 = +1

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the direction of sharpness processing applied by the camera when the image was shot.

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Normal 1 = Soft 2 = Hard

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_SHARPNESS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SHARPNESS_FACTOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SHARPNESS_FREQ_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SHARPNESS_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SHEET_DISCLOSURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_SHOOTING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's shooting mode.

TAG_SHOOTING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SHORT_DOCUMENT_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SHORT_FOCAL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_SHOT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Advertised as ASCII, but actually isn't.

TAG_SHOT_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SHOT_INFO_ARRAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SHUTTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_SHUTTER_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_SHUTTER_COUNT_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_SHUTTER_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_SHUTTER_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Shutter speed by APEX value.

TAG_SHUTTER_SPEED_VALUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_SHUTTER_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SIGNATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_SIGNIFICANT_BITS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_SLICES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_SLOW_SHUTTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_SLOW_SYNC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_SOFT_SKIN_EFFECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SOFTWARE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SOFTWARE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_SOFTWARE_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SONY_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_SONY_F_NUMBER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

TAG_SONY_MODEL_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_SOURCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SPATIAL_FREQ_RESPONSE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SPATIAL_FREQ_RESPONSE_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SPECIAL_INSTRUCTIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SPECIAL_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

Three values: Value 1: 0=Normal, 2=Fast, 3=Panorama Value 2: Sequence Number Value 3: 1 = Panorama Direction: Left to Right 2 = Panorama Direction: Right to Left 3 = Panorama Direction: Bottom to Top 4 = Panorama Direction: Top to Bottom

TAG_SPECIAL_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_SPECTRAL_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SPEED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Speed of GPS receiver GPSSpeed 13 D RATIONAL 1

TAG_SPEED_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Speed unit GPSSpeedRef 12 C ASCII 2

TAG_SPOT_FOCUS_POINT_X_COORDINATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SPOT_FOCUS_POINT_Y_COORDINATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SPOT_HALFTONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_SPOT_METERING_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_SRAW_QUALITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_SRGB_RENDERING_INTENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_STANDARD_ID_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_STANDARD_OUTPUT_SENSITIVITY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_STATE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_STATUS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

GPS receiver status GPSStatus 9 9 ASCII 2

TAG_STRIP_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The size of the raster data in bytes.

TAG_STRIP_OFFSETS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The position in the file of raster data.

TAG_STRIP_ROW_COUNTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUB_IFD_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Tag is a pointer to one or more sub-IFDs

TAG_SUB_LOCATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SUBFILE_TYPE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The old subfile type tag. 1 = Full-resolution image (Main image) 2 = Reduced-resolution image (Thumbnail) 3 = Single page of multi-page image

TAG_SUBJECT_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

TAG_SUBJECT_DISTANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

Indicates the distance the autofocus camera is focused to.

TAG_SUBJECT_DISTANCE_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the distance to the subject.

TAG_SUBJECT_LOCATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUBJECT_LOCATION_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUBJECT_PROGRAM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_SUBJECT_REFERENCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SUBSECOND_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUBSECOND_TIME_DIGITIZED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUBSECOND_TIME_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_SUPER_MACRO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_SUPPLEMENTAL_CATEGORIES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_SWEEP_PANORAMA_DIRECTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_SWEEP_PANORAMA_FIELD_OF_VIEW - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TAG_A2B0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_A2B1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_A2B2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_aabg - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_aagg - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_aarg - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_B2A0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_B2A1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_B2A2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_bfd - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_bkpt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_bTRC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_bXYZ - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_calt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_chad - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_chrm - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_COUNT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_cprt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_crdi - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_desc - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_devs - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_dmdd - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_dmnd - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_gamt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_gTRC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_gXYZ - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_kTRC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_lumi - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_meas - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_mmod - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_ncl2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_ncol - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_ndin - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_pre0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_pre1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_pre2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_ps2i - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_ps2s - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_psd0 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_psd1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_psd2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_psd3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_pseq - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_resp - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_rTRC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_rXYZ - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_scrd - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_scrn - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_targ - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_tech - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_vcgt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_view - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_vued - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TAG_wtpt - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_TARGET_APERTURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_TARGET_EXPOSURE_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_TELECONVERTER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_TEMPERATURE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TEXT_STAMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Off
2 = On

TAG_TEXT_STAMP_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Off
2 = On

TAG_TEXT_STAMP_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TEXT_STAMP_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TEXTUAL_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_THRESHOLDING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

1 = No dithering or halftoning 2 = Ordered dither or halftone 3 = Randomized dither

TAG_THUMB_HEIGHT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

TAG_THUMB_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

TAG_THUMBNAIL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_THUMBNAIL_COMPRESSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory

Deprecated.
use com.drew.metadata.exif.ExifDirectoryBase#TAG_COMPRESSION instead.

TAG_THUMBNAIL_DIMENSIONS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

2 values - x,y dimensions in pixels.

TAG_THUMBNAIL_IMAGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_THUMBNAIL_IMAGE_VALID_AREA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_THUMBNAIL_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory

The size of the thumbnail image data in bytes.

TAG_THUMBNAIL_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

Offset of Preview Thumbnail

TAG_THUMBNAIL_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory

The offset to thumbnail image bytes.

TAG_THUMBNAIL_OLD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_THUMBNAIL_SIZE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

Size in bytes

TAG_TILE_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TILE_LENGTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TILE_OFFSETS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TILE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_TIME_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_TIME_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_TIME_SENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_TIME_STAMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

GPS time (atomic clock) GPSTimeStamp 7 7 RATIONAL 3

TAG_TIME_ZONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

(string)

TAG_TIME_ZONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TIME_ZONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

(String).

TAG_TIME_ZONE_DIGITIZED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TIME_ZONE_OFFSET_TIFF_EP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TIME_ZONE_ORIGINAL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TIMELINE_INFORMATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_TIMER_RECORDING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TITLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_TONE_CURVE_MATCHING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_TONE_CURVE_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_TOP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_TOTAL_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_TOUCH_AE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TRACK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Direction of movement GPSTrack 15 F RATIONAL 1

TAG_TRACK_REF - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

Reference for direction of movement GPSTrackRef 14 E ASCII 2

TAG_TRANSFER_FUNCTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TRANSFER_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_TRANSFORM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

(decoded as two 16-bit signed integers) '-1 1' = Slim Low '-3 2' = Slim High '0 0' = Off '1 1' = Stretch Low '3 2' = Stretch High

TAG_TRANSFORM_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

(decoded as two 16-bit signed integers) '-1 1' = Slim Low '-3 2' = Slim High '0 0' = Off '1 1' = Stretch Low '3 2' = Stretch High

TAG_TRANSPARENCY_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_TRANSPARENT_COLOR_FLAG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

TAG_TRANSPARENT_COLOR_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

TAG_TRANSPARENT_COLOR_INDEX - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

Deprecated.
use MetadataExtractor.GifHeaderDirectory.TAG_BACKGROUND_COLOR_INDEX instead.

TAG_TRAVEL_DAY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_TRIGGER_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_TRIGGER_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_UIB_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_UNICODE_ALPHA_NAMES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_UNIQUE_DOCUMENT_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_UNIQUE_OBJECT_NAME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_UNIT_SPECIFIER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

TAG_UNITS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

Units for pixel density fields.

TAG_UNKNOWN_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_UNKNOWN_10 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_11 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_12 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_UNKNOWN_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_UNKNOWN_20 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_27 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_28 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_29 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_UNKNOWN_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_UNKNOWN_30 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_31 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_32 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_33 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_34 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

An unknown tag, as a rational.

TAG_UNKNOWN_35 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_36 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_37 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_38 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_39 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_40 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_41 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_42 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_43 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_44 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_45 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_46 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_47 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_48 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_49 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_5 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_50 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_51 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_52 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_53 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_54 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_55 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_UNKNOWN_6 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_UNKNOWN_7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_8 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_UNKNOWN_DATA_DUMP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

No idea, what this is

TAG_UPTIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

4 Bytes
Time in 1/100 s from when the camera was powered on to when the image is written to memory card

TAG_URGENCY - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

TAG_URL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_URL_LIST - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_USER_COMMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_USER_INPUT_FLAG - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

TAG_USER_LABEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

TAG_USER_LABEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

TAG_USER_LABEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

TAG_USER_PROFILE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_VALID_AF_POINTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo

TAG_VALID_BITS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

TAG_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_VERSION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory

TAG_VERSION_ID - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

GPS tag version GPSVersionID 0 0 BYTE 4

TAG_VIGNETTE_CONTROL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

The camera's vignette control setting.

TAG_VIGNETTING_CORRECTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_VIGNETTING_CORRECTION_ARRAY_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_VIGNETTING_CORRECTION_ARRAY_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_VOICE_MEMO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_VR_INFO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_VRD_OFFSET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_WATER_DEPTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_WATERMARK - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_WB_ADJUST_AB - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

WB adjust AB.

TAG_WB_ADJUST_GM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

WB adjust GM.

TAG_WB_BLUE_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_WB_BLUE_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_WB_GREEN_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_WB_GREEN_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_WB_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_WB_RED_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_WB_RED_LEVEL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_WB_SHIFT_AMBER_MAGENTA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.FocalLength

0 = Auto 1 = Sunny 2 = Cloudy 3 = Tungsten 4 = Florescent 5 = Flash 6 = Custom

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.ShotInfo

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

White balance (aka light source). '0' means unknown, '1' daylight, '2' fluorescent, '3' tungsten, '10' flash, '17' standard light A, '18' standard light B, '19' standard light C, '20' D55, '21' D65, '22' D75, '255' other.

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Auto
2 = Daylight
3 = Cloudy
4 = Incandescent
5 = Manual
8 = Flash
10 = Black & White
11 = Manual
12 = Shade

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

0 = Auto 1 = Daylight 2 = Shade 3 = Tungsten 4 = Fluorescent 5 = Manual

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

TAG_WHITE_BALANCE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_WHITE_BALANCE_1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

0 = Auto 1 = Daylight 2 = Shade 3 = Tungsten 4 = Fluorescent 5 = Manual

TAG_WHITE_BALANCE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

12 = Flash 0 = Manual 1 = Auto?

TAG_WHITE_BALANCE_2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_WHITE_BALANCE_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

TAG_WHITE_BALANCE_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_WHITE_BALANCE_BIAS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

TAG_WHITE_BALANCE_BLUE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_WHITE_BALANCE_BRACKET - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_WHITE_BALANCE_FINE_TUNE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

TAG_WHITE_BALANCE_FINE_TUNE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_WHITE_BALANCE_GREEN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_WHITE_BALANCE_MATCHING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_WHITE_BALANCE_MODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

This tag indicates the white balance mode set when the image was shot.

TAG_WHITE_BALANCE_RED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_WHITE_BALANCE_TABLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

TAG_WHITE_BOARD - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_WHITE_POINT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_WHITE_POINT_X - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_WHITE_POINT_Y - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

TAG_WIDE_FOCUS_ZONE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings

TAG_WIDE_RANGE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

TAG_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

TAG_WIN_AUTHOR - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The image author, as used by Windows XP (called Artist in the Windows shell).

TAG_WIN_COMMENT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The image comment, as used by Windows XP.

TAG_WIN_DEVMODE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_WIN_KEYWORDS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The image keywords, as used by Windows XP.

TAG_WIN_SUBJECT - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The image subject, as used by Windows XP.

TAG_WIN_TITLE - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

The image title, as used by Windows XP.

TAG_WORKFLOW_URL - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_WORLD_TIME - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

TAG_WORLD_TIME_LOCATION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

1 = Home
2 = Destination

TAG_X_PIXELS_PER_METER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_X_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_XML - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_XMP_DATA - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

TAG_XYZ_VALUES - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

TAG_Y_PIXELS_PER_METER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

TAG_Y_RESOLUTION - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_YCBCR_COEFFICIENTS - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_YCBCR_POSITIONING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_YCBCR_SUBSAMPLING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase

TAG_YEAR_CREATED - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

TAG_ZONE_MATCHING - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

TAG_ZOOM - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

TAG_ZOOM_SOURCE_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TAG_ZOOM_TARGET_WIDTH - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings

TagAeLock - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAfAreas - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAfFineTune - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAfFineTuneAdj - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAfInfo - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagAfPoint - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagAfPointSelected - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAfSearch - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

tagAlignMatvec - Variable in class gov.nih.mipav.model.file.FileAfni

The "p-values" for fico, fitt, and fizt datasets are 2-sided: that is, the value displayed by AFNI (below the slider) is the probability that the absolute value of such a deviate will exceed the threshold value on the slider.

tagArray - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor

TagArtFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagArtFilterEffect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagAspectFrame - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagAspectRatio - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagAutoFocus - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagBlackLevel1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlackLevel2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagBlackLevel2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagBlackLevel2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlackLevel3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlackLevelBlue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlackLevelGreen - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlackLevelRed - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagBlueBalance - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

tagBuffer - Variable in class gov.nih.mipav.model.file.FileDicomBase

The buffer that holds the tags of the DICOM image.

TagCameraSettingsVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagCameraTemperature - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCameraTemperature - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagCmContrast - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmExposureCompensation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmHue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmSaturation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmSharpness - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmWhiteBalance - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmWhiteBalanceComp - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCmWhiteBalanceGrayPoint - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCodeRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagCodeRenderer

TagColorCreatorEffect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagColorMatrix - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagColorMatrix2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagColorSpace - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagColorSpace - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagComparator(int) - Constructor for class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.TagComparator

Creates a new TagComparator object.

TagCompressionFactor - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagContrastSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagContrastSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCoringFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCoringFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCoringValues - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCoringValues - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCropBottom - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagCropHeight - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCropHeight - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCropLeft - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCropLeft - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCropLeft - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagCropRight - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagCropTop - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCropTop - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCropTop - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagCropWidth - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagCropWidth - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagCustomSaturation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagDateTimeUtc - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

tagDescription - Variable in class gov.nih.mipav.model.file.FileInfoBase

TagDescriptor(T) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor

TagDeviceType - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

tagDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay

DOCUMENT ME!

TagDistortionCorrection - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagDistortionCorrection - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionCorrection2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagDistortionInfo - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagDistortionN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionParam02 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionParam04 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionParam08 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionParam09 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionParam11 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDistortionScale - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

TagDriveMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagEncryptionKey - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagEnhancer - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagEnhancerValues - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

tagExistsInField(String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

TagExposureCompensation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagExposureMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagExposureMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagExposureShift - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagExposureTime - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagExtendedWBDetect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagExternalFlash - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagExternalFlashBounce - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagExternalFlashGuideNumber - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagExternalFlashZoom - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagFaceDetect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFaceDetectArea - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagFaceDetectFrameCrop - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagFaceDetectFrameSize - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagFaceName - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFaceRecognition - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFacesDetected - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagFilmMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagFirmwareName - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFlashControlMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFlashExposureComp - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFlashIntensity - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFlashMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFlashRemoteControl - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFNumber - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFocalLengthIn35mmFormat - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagFocusDistance - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagFocusInfoVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagFocusMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFocusProcess - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagFocusStepCount - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagFocusStepInfinity - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagFocusStepNear - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagGainBase - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagGradation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagHighIsoMultiplierBlue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagHighIsoMultiplierGreen - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagHighIsoMultiplierRed - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagHueSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagImageProcessingVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagImageQuality2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagImageStabilization - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagImageStabilization - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

tagInfo - Variable in class gov.nih.mipav.model.file.FileDicomTag

Pointer to more information about this tag, read in and contained within the dicom dictionary.

tagInformationPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Panels used by this dialog box

TagInputListener(JTextField, JList, JDialogDicomTagSelector) - Constructor for class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener

TagInternalFlash - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagInternalLensSerialNumber - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagIso - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagISO - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagJpgFromRaw - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

tagKey - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor

DOCUMENT ME!

tagKey - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

DOCUMENT ME!

tagKey - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

DOCUMENT ME!

TagKeystoneCompensation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagKeystoneDirection - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagKeystoneValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

tagLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

TagLensFirmware - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagLensModel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagLensType - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagLightSource - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagLinearityLimitBlue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagLinearityLimitGreen - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagLinearityLimitRed - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

tagList - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Original list of available DICOM tags

tagList - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags

The list of private tags that map to the keys in the previous list

tagList - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags

TagLocalLocationName - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagMacroLed - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagMacroMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagMagicFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagMake - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagMakerNoteVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagManometerPressure - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagManometerReading - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagManualFlash - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagManualFlashStrength - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagMaxFaces - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagMeteringMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

tagModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

model associated with tag information.

TagModel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagModifiedSaturation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagMultipleExposureMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

tagName - Variable in class gov.nih.mipav.model.file.FileInfoBase

tagName - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

TagNdFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagNoiseFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagNoiseReduction - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagNoiseReduction2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

tagNumber - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

TagNumWbEntries - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagNumWbEntries - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagOrientation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagOrientationInfo - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagOriginalDirectory - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagOriginalFileName - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagPanasonicRawVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagPanoramaMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeBWFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeContrast - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeEffect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeHue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeSaturation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeSharpness - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureModeTone - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPictureWizard - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagPitchAngle - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPreviewIfd - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagPreviewImageLength - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPreviewImageStart - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPreviewImageValid - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagPrintImVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDirectory

TagRawDataByteOrder - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagRawDataCFAPattern - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagRawDataOffset - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagRawDevArtFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevAutoGradation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevColorSpace - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevColorSpace - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevContrastValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevContrastValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevEditStatus - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevEngine - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevEngine - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevExposureBiasValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevExposureBiasValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevGradation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevGrayPoint - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevGrayPoint - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevMemoryColorEmphasis - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevMemoryColorEmphasis - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevNoiseReduction - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevNoiseReduction - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevPictureMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmBwFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmContrast - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmNoiseFilter - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmPictureTone - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmSaturation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevPmSharpness - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevSaturation3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevSaturationEmphasis - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevSaturationEmphasis - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevSettings - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevSharpnessValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevSharpnessValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevWbFineAdjustment - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevWbFineAdjustment - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawDevWhiteBalance - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevWhiteBalanceValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

TagRawDevWhiteBalanceValue - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

TagRawInfoVersion - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagRedBalance - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagReferenceRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.TagReferenceRenderer

TagRollAngle - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagRowsPerStrip - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSamsungModelId - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagSaturationSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagSceneArea - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagSceneDetect - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagSceneDetectData - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagSceneMode - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

tagSelector - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener

tagSelectorPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Panels used by this dialog box

TagSensorAreas - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagSensorBottomBorder - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSensorCalibration - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagSensorHeight - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSensorLeftBorder - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSensorRightBorder - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSensorTemperature - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TagSensorTopBorder - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSensorWidth - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagSerialNumber - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

tagsetFloats - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

tagsetLabelsString - Variable in class gov.nih.mipav.model.file.FileAfni

2560 characters giving the help strings for the markers (256 chars per marker, EXACTLY, including the NULS).

TagShadingCompensation - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagShadingCompensation2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagSharpnessSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagSharpnessSetting - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagShotInfo - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

tagsImportedFromNonDicomImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DICOM tags extracted from the image we want to save.

tagsList - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

The additional tags list is a list of tags the DTI group has requested.

TagSmartAlbumColor - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagSmartRange - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

tagsModel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

tagsTable - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Option table where dicom tags are reported to.

tagsTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

TagStackedImage - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagStripByteCounts - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagStripOffsets - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

tagTable - Variable in class gov.nih.mipav.model.file.FileDicom

The tag table for the base FileInfoDicom.

tagTable - Variable in class gov.nih.mipav.model.file.FileDicomTagTable

Tags unique to this slice, or all of the tags for this slice if this is a reference tag table.

tagTable - Variable in class gov.nih.mipav.model.file.FileInfoDicom

Stores all the information about the DICOM tags.

tagTable - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor

A reference to the tag table containing the tag we will be editing.

tagTable - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

A reference to the tag table containing the tag we will be editing.

tagTable - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

A reference to the tag table containing the tag we will be editing.

tagTable - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

TagToneLevel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

tagTypeHolder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML

TagUnknownBlock1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagUnknownBlock2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagUnknownBlock3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagUnknownBlock4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagValidBits - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagValidPixelDepth - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

tagValue - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

tagViewer - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

The table model

TagWbBlueLevel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagWbGLevel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel3000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel3300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel3600K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel3900K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel4000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel4300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel4500K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel4800K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel5300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel6000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel6600K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGLevel7500K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbGreenLevel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagWbInfo - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagWbInfo2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagWbRbLevels - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels3000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels3300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels3600K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels3900K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels4000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels4300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels4500K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels4800K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels5 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels5300K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels6 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels6000K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels6600K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevels7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbRbLevels7500K - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevelsAuto - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsCloudy - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsCoolWhiteFluor - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsCwB1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevelsCwB2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevelsCwB3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevelsCwB4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

TagWbRbLevelsDaylightFluor - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsDayWhiteFluor - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsEveningSunlight - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsFineWeather - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsShade - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsTungsten - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsUsed - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRbLevelsWhiteFluorescent - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWbRedLevel - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

TagWbRgbLevels - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

TagWbRgbLevels1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels5 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels6 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbRgbLevels7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType1 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType3 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType4 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType5 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType5 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType6 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType6 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWbType7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

TagWbType7 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

TagWhiteBalance2 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagWhiteBalanceBracket - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagWhiteBalanceComp - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagWhiteBalanceSetup - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

TagWhiteBalanceTemperature - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

TagYCbCrCoefficients - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

TagZoomStepCount - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

TAIL - gov.nih.mipav.model.structures.jama.SuperLU.stack_end_t

TAKE_OWNERSHIP - gov.nih.mipav.model.algorithms.CeresSolver.Ownership

takeScreenShot - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

talairach - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

talairach - Variable in class gov.nih.mipav.model.structures.ModelImage

Reference to talairach transform information.

TalairachCenter - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

talairachField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

talairachGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Method that goes to the talairach coordinate that is entered

talairachImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC

talairachMajorLineColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

talairachMinorLineColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

talairachPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

panels

talairachPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

talairachPanel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Panel for Talairach position display.

TalairachTransformInfo - Class in gov.nih.mipav.model.structures

This is the structure to store information needed to compute ACPC and Talairach normalization.

TalairachTransformInfo() - Constructor for class gov.nih.mipav.model.structures.TalairachTransformInfo

Creates a new TalairachTransformInfo object.

talGoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase

talGoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase

talXLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

talairach goto components*

talXTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

talYLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

talairach goto components*

talYTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

talZLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase

talairach goto components*

talZTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase

TAMAR - Variable in class gov.nih.mipav.model.file.FileDicomBase

TAMAR_COMPRESSED_PIXEL_DATA - Static variable in class gov.nih.mipav.model.file.FileDicom

TAMARData - Variable in class gov.nih.mipav.model.file.FileDicom

TAMARImageData() - Method in class gov.nih.mipav.model.file.FileDicom

tan() - Method in class gov.nih.mipav.util.DoubleDouble

For -PI/2 < x < PI/2, tan(x) = x + (x**3)/3 + 2*(x**5)/15 + 17*(x**7)/315 + 62*(x**9)/2835 + ... + (2**(2*n))*((2**(2*n)) - 1)*Bn*(x**(2*n-1))/((2*n)!)

tanButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

TANH_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

tanhButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

tao_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tArea - Variable in class gov.nih.mipav.view.components.WidgetFactory.ScrollTextArea

accessible JTextArea

tArea - Variable in class gov.nih.mipav.view.ViewJFrameMessage.ScrollTextArea

DOCUMENT ME!

target - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams

target - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

target - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

target - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

target - Variable in class gov.nih.mipav.model.file.FileDeleter

DOCUMENT ME!

target() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

target_length_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.CurveCostFunction

targetAxis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

the orientation the images are remapped to before processing:

targetBinned - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

targetImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter

targetImage - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising

targetImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite

targetImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

targetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

targetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

targetImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

target image references.

targetImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

target image variables.

targetImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

target image variables.

targetImageChooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

target image variables.

targetImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

targetImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

targetImageDirectory - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

targetImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

targetImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

targetImageName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

targetList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Surface target list (tumors).

targetTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Target transform group.

targetTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Target transform group.

targetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Target transform.

targetTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Target transform.

targetVolumeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Label containing the volume of the current target surface.

targetXdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetXdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetXres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetXres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetXText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

X label for the center coordinate of the current target surface.

targetYdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetYdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetYres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetYres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetYText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Y label for the center coordinate of the current target surface.

targetZdim - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetZdim - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetZres - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

targetZres - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

targetZText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Z label for the center coordinate of the current target surface.

tArray - Variable in class gov.nih.mipav.model.file.FileZVI

tau - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats

tau - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

tau - Variable in class gov.nih.mipav.model.algorithms.LsqFit

tau - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

tau - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

Tau - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD

Tau - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

tau_2D_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

tau_2D_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

tau_2D_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

tau_2D_W - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

tauMatch_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

tauMatch_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

Taut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD

Taut - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

tAxisOffsets - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

tAxisOffsets - Variable in class gov.nih.mipav.model.file.FileInfoAfni

If TAXIS_NUMS[1] > 0, then this array gives the time offsets of the

TAYLOR - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate Taylor series interpolation.

tBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Frame ToolBar.

tBar - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

tBar - Variable in class gov.nih.mipav.view.ViewJFrameMessage

DOCUMENT ME!

tBar - Variable in class gov.nih.mipav.view.ViewJFrameMessageGraph

DOCUMENT ME!

tBarPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

Panel to hold the toolbar.

TBSplineVolume() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

tc_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

TC_DIST_FACTOR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

tc_Index - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

tccp_info - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t

information concerning tile component parameters

tccps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcp_t

tile-component coding parameters

tcd_image - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t

info on each image tile

tcd_tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t

current encoded/decoded tile

tCoord - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

coordinate used to transform data point from image coordinate to dicom coordinate.

tcp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t

coding/decoding parameters common to all tiles

tcps - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

tile coding parameters

tCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics

tcustx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

tcusty_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

TCZ - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

Int denoting TCZ sequence

td_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tdata - Variable in class gov.nih.mipav.model.algorithms.LsqFit

TData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.TData

tDel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

226 Delay time after trigger (msec).

tdim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask

tDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

tDim - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

tDim of 4d image

tDim - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

tDim - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

tDim - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

tDim - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

tDim - Variable in class gov.nih.mipav.model.file.FileZVI

tDim - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Number of volumes in the dataset.

tDim - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

tDim - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

tDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z and time dimension values.

tDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dimensions of image A.

tDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dimensions of image A.

tDim - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Dimensions of image A.

tDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z and time dimension values.

tDim - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Note that xDim and yDim refer to destImage, while zDim and tDim refer to imageA.

tDim - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Time dimension of the original image.

Tdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing

Time dimension of the image.

Tdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

Original T dimension of the image.

tdx - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

XTsiz

tdy - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

YTsiz

te - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

te - Variable in class gov.nih.mipav.model.file.FileGESigna4X

te - Variable in class gov.nih.mipav.model.file.FileInfoCOR

DOCUMENT ME!

te - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

te - Variable in class gov.nih.mipav.model.file.FileInfoMGH

te - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

te - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

te_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

te2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

206 second echo echo (usec).

TE2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

TE2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

TECH - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

Medical Formats(*.dcm; *.ima; *.img; *.mnc; *.sig; *.xml; *.head; *.nii, *.rec, *.frec, *.nrrd, *.gz, *.bz2, *.zip).

TED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper

teensy_parchk - Variable in class gov.nih.mipav.model.algorithms.NL2sol

teLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

TEM - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

TEM - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

temp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

temp - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< current octave.

temp - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.ImageConverter

temp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

The temp.

temp_buffer_needed - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

temp_file - Variable in class gov.nih.mipav.model.file.libjpeg.backing_store_info

temp_name - Variable in class gov.nih.mipav.model.file.libjpeg.backing_store_info

temp2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tempA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

temp image

tempB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

temp image

tempDirList - Static variable in class gov.nih.mipav.view.ViewUserInterface

temperature - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

For Imaging Environment.

tempFileDir - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

tempFileName - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

tempImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization

a temporary image array.

tempImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

tempImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

tempImage - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

DOCUMENT ME!

template - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient

tempMaskImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations

Model Images

tempmemobj - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

tempmemobj_imag - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

tempmemobj_real - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

TemporalBroxOpticalFlow - Class in gov.nih.mipav.model.algorithms

TemporalBroxOpticalFlow() - Constructor for class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

TemporalBroxOpticalFlow(ModelImage, ModelImage, ModelImage, double, double, int, double, double, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

tempPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

tempPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

TempSpace(int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

TEN - Static variable in class gov.nih.mipav.util.DoubleDouble

tend - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

tenPercent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

tenPercent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

TENSOR_ESTIMATION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

tensorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

Diffusion tensor image:

tensorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

Diffusion tensor image:

tensorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

term_source(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

termBlack - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable

termBlack - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable

termcode - Variable in class gov.nih.mipav.model.algorithms.NESolve

terminal_class_counts - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability

TERMINALNODES - gov.nih.mipav.model.algorithms.StochasticForests.PredictionType

terminate() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel

terminate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl

terminate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning

TerminatingNodeAdjacencyFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

TerminatingNodeAdjacencyFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TerminatingNodeAdjacencyFunction

termination_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary

termination_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverSummary

termination_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

termination_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategySummary

TerminationType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.TerminationType

TerminationTypeToString(CeresSolver.TerminationType) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

termuc(int[], double) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

termuc(int[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

termvalBest - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions

termvalBest - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

termvalue - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions

termvalue - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

termWhite - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable

termWhite - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable

TernaryCostFunction(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction

TernaryCostFunction2(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction2

TernaryCostFunction3() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction3

TernaryCostFunction4(int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.TernaryCostFunction4

TESliceSpoilerGradientsAmplitude - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

TEsliceSpoilerGradientsDuration - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

TESliceSpoilerGradientsLimit - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

TESMD9(double[], double[][], double[], int, int, int, int, int, int[], int[], int[], int[], int[], int[], int[], int[], int[], double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, boolean[], double[], int[], double[], double[], double[], double[], double, double, double[], double[], double[], double[], int[], double[], double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

test - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson

test - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest

test - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter

test() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.test

test() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur

test() - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

test() - Method in class gov.nih.mipav.model.algorithms.KDTree

test() - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2

test() - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

test() - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.GrowingPlatePattern

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePattern

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical

test() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

test(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.EstimateTensorLLMSE

test(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

test(LSQR.lsqr_solver_ez, int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.LSQR

!

test(String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

test(ArrayList<Double[]>, int, double) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork

Test - Class in gov.nih.mipav.view.renderer.WildMagic.AAM

Test - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Test() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.Test

Test() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Test

test_1() - Method in class gov.nih.mipav.model.algorithms.LSQR

test_2() - Method in class gov.nih.mipav.model.algorithms.LSQR

test_3D() - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

test_3D_reconstruct() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_basic() - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

test_basic() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

test_basic_call() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

test_bilinear_operations() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

test_blob() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

test_BoSClassification() - Method in class gov.nih.mipav.model.algorithms.libdt

test_centrfreq() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_cgau() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_cholproj() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_cluster_null() - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

test_cmor() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_compare_different_czt_methods() - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

Starts the program.

test_compare_downcoef_coeffs() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_conv() - Method in class gov.nih.mipav.model.algorithms.Covdet

test_cwt_method_fft() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_cwt_small_scales() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dasum() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_data_gen() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_daxpy() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_dcm2q() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_dcopy() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_ddot() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_denoise_2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_actual_thresh() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_default() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_hard() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_levels() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_std() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_thresh_multiplier() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_threshold_low() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_2d() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_actual_thresh() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_levels() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_soft() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_std() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_thresh_multiplier() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_denoise_udwt_threshold_low() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_digamma() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_dirichlet_fit() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_dirichlet_sample() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_dirichletRnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

test_discreteRnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

test_dnrm2() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_downcoef_multilevel() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_drot() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_dscal() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_dwdtn_idwtn_allwavelets() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_coeff_len() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_idwt_allmodes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_idwt_basic() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_idwt_basic_complex() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_idwt_partial_complex() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_max_level() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_short_input_allmodes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt_wavelet_kwd() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_dwt2() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_erfinv() - Method in class gov.nih.mipav.model.algorithms.Erfinv

test_fbsp() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_fourier_adj_convolution_kernel_hrf_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_fourier_adj_convolution_kernel_hrf_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_fourier_convolution_kernel_hrf_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_fourier_convolution_kernel_hrf_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_gamma_fit() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_gammaln() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_gamrnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

test_gaus() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_gaussian_elimination() - Method in class gov.nih.mipav.model.algorithms.Covdet

test_gaussRnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

test_gaussRnd2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

test_HEM() - Method in class gov.nih.mipav.model.algorithms.libdt

test_HEMDTM() - Method in class gov.nih.mipav.model.algorithms.libdt

test_homkermap() - Method in class gov.nih.mipav.model.algorithms.SVM

test_idamax() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test_idwt_none_input() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_idwt2() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_inf_norm() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_integ_adj() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_integ_op() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_intwave_orthogonal() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_inv_posdef() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_isnormq() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_isq() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_logmulexp() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_logsumexp() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_mdwt_1D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mdwt_2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mexh() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_midwt_1D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_midwt_2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mirdwt_1() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mirdwt_2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mle() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

Maximum likelihood estimation (MLE):** ```python from predictr import Analysis prototype_a = Analysis(...) # create an instance prototype_a.mle() # use instance methods ``` Median Rank Regression (MRR)** ```python from predictr import Analysis prototype_a = Analysis(...) # create an instance prototype_a.mrr() # use instance methods ``` ### Bias-correction methods Since parameter estimation methods are only asymptotically unbiased (sample sizes -> "infinity"), bias-correction methods are useful when you have only a few failures.

test_modchol() - Method in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization

test_morl() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_mrdwt_1() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mrdwt_2() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mrdwt_2L2() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

test_mrr() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

test_mu() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

test_multiple() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

test_neighbors() - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

test_nonnegative_garotte() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_normcdf() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_per_axis_wavelets() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_perfect_reconstruction() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_pochhammer() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_polar() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

test_polya_fit() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_power_2_padding_length() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_ppnd16() - Method in class gov.nih.mipav.model.algorithms.Erfinv

test_ppnd7() - Method in class gov.nih.mipav.model.algorithms.Erfinv

test_q2dcm() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qconj() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qcvq() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qdecomp() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qmult() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qnorm() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_qsort() - Method in class gov.nih.mipav.model.algorithms.Covdet

test_qvqc() - Method in class gov.nih.mipav.model.algorithms.Quaternions

test_randgamma() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_randwishart() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_scal2frq_scale() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_sdca_basic() - Method in class gov.nih.mipav.model.algorithms.SVM

test_sgd_basic() - Method in class gov.nih.mipav.model.algorithms.SVM

test_shan() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_smooth() - Method in class gov.nih.mipav.model.algorithms.Covdet

test_solve_tri() - Method in class gov.nih.mipav.model.algorithms.Fastfit

TEST_SOURCE - Static variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

Compare outputs of different modules for self-testing.

test_sproot() - Method in class gov.nih.mipav.model.algorithms.sproot

test_svd2() - Method in class gov.nih.mipav.model.algorithms.Covdet

test_swt_axis() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt_decomposition() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt_default_level_by_axis() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt_iswt_integration() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt_max_level() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt_variance_and_energy_preservation() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt2_axes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt2_iswt2_integration() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt2_iswt2_non_square() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swt2_variance_and_energy_preservation() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swtn_axes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swtn_decomposition() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swtn_iswtn_integration() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swtn_iswtn2_integration() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_swtn_variance_and_energy_preservation() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_T2z0a_invert_design() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

TEST_TERM_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

test_threshold() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_threshold_firm() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_toeplitz_adj_convolution_kernel_hrf_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_adj_convolution_kernel_hrf_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_adj_convolution_kernel_signal_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_adj_convolution_kernel_signal_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_convolution_kernel_hrf_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_convolution_kernel_hrf_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_convolution_kernel_signal_on_ai_s() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_toeplitz_convolution_kernel_signal_on_dirac() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_trigamma() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_upcoef_multilevel() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_upcoef_reconstruct() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_variants_and_flipping() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

test_videoSegm(String) - Method in class gov.nih.mipav.model.algorithms.libdt

test_wavedec() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_wavedec2_many_levels() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_wavefun_bior13() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_wavefun_sym3() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_wavelet_coefficients() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_wavelet_properties() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec_accuracies() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec_all_wavelets_modes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec_axes_subsets() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec_axis_db2() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec_odd_length() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec2_accuracies() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec2_all_wavelets_modes() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec2_axes_subsets() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec2_odd_length() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverec3_accuracies() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverecn2() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_waverecn3() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

test_weights() - Method in class gov.nih.mipav.model.algorithms.SVM

test_wishpdf() - Method in class gov.nih.mipav.model.algorithms.Fastfit

test_zero_mirror_zero_padd_unpadd() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test_zero_padd_unpadd() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.GrowingPlatePattern

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegularEdgePattern

test1() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal

test10x12x16bitCMYK() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PsdReaderTest

test12() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

test1D() - Method in class gov.nih.mipav.model.algorithms.HaarTransform

test2() - Method in class gov.nih.mipav.model.algorithms.KDTree

test2() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.CornerEdgePattern

test2PerfectGaussians - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

test3() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.HolesPattern

test8x8x8bitGrayscale() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PsdReaderTest

testAddAndGetSegment() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

testAddingMultipleSegments() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

testAdj() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testAlgorithm() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

DOCUMENT ME!

TESTApplyOrderingNormal() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTApplyOrderingOrderingTooSmall() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testAreMultipleAllowed() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

testBasics() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteTrieTest

testBivariateCubicCoefficients5By5() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel

TESTBlockRandomAccessDenseMatrixGetCell() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTBlockRandomAccessDenseMatrixWriteCell() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testBlueBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

testBottom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

testBounds3D(double[], String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

testBounds3D(double[], String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

testBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

testButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

testCase - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

testCase - Variable in class gov.nih.mipav.model.algorithms.Integration2

testCase - Variable in class gov.nih.mipav.model.algorithms.Integration2EP

testCase - Variable in class gov.nih.mipav.model.algorithms.Lmmin

testCase - Variable in class gov.nih.mipav.model.algorithms.LsqFit

testCase - Variable in class gov.nih.mipav.model.algorithms.NESolve

testCase - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

testCase - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

testCase - Variable in class gov.nih.mipav.model.algorithms.ODE

testCase - Variable in class gov.nih.mipav.model.algorithms.ODEEP

testCDF() - Method in class gov.nih.mipav.model.algorithms.Gamma

testCephes() - Method in class gov.nih.mipav.model.algorithms.Cephes

testCfft() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testcgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma

testChirp() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testChiSquaredInverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics

testCompare() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

testcomplexArgument() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

testcomplexPsi() - Method in class gov.nih.mipav.model.algorithms.Psi

testComponent(JComponent, int) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp

testComponentData1() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testComponentData2() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testComponentData3() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testCompression() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testComputeJ1() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

testConstructorInvalidBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testConstructorTooLong() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testConstructorTooShort() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testConstructorValidBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testConstructWithNullBufferThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteArrayReaderTest

testConstructWithNullBufferThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest

testConstructWithNullBufferThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessStreamReaderTest

testConstructWithNullStreamThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialByteArrayReaderTest

testConstructWithNullStreamThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.StreamReaderTest

testContainsSegment() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

testContainsTag() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testContourPlot() - Method in class gov.nih.mipav.model.algorithms.ContourPlot

testconv2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

testConvertISO2022CharsetToJavaCharset() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.Iso2022ConverterTest

testCrashRegressionTest() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testCRDiskmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRDiskmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRDiskmap3() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRDiskmap5() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRDiskmap7() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCreateNullOutputStream() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NullOutputStreamTest

testCreateRational() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

testCRRectmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRRectmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testCRRectmap3() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testData - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testData() - Method in class gov.nih.mipav.model.algorithms.FitExponential

Test data to test fitting of exponential.

testData() - Method in class gov.nih.mipav.model.algorithms.FitGaussian

Test data to test fitting of gaussian.

testData() - Method in class gov.nih.mipav.model.algorithms.FitLaplace

Test data to test fitting of gaussian.

testData() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential

Test data to test fitting of exponential.

testDataType - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

testDateTime() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest

testDateTime() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testddst(int) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

testDecimalToDegreesMinutesSeconds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.GeoLocationTest

testDefaultEndianness() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testDefaultEndianness() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

TestDetectStructure() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testDifferenceImageAndThumbnailOrientations() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testDisallowsAddingEmptyPath() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteTrieTest

testDiskmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap3() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap4() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap5() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap6() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDiskmap7() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testDistance(int, int, int, int, int, int, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

Tests the distance for closeness; finds the length of the normal from (x,y) to the line (x1,y1) (x2,y2).

testDouble - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

True when double precision testing should be performed, default is float.

testEquality() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testEqualsAndHashCode() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest

testErgas() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testExifDirectory_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

testExifDirectory_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

testExifThumbnailDirectory_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

testExtensions() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.FileTypeTest

testExtermap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testExtermap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testExtract_DataPrecision() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testExtract_Height() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testExtract_InvalidData() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IccReaderTest

testExtract_NumberOfComponents() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testExtract_NumberOfTables() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest

testExtract_ProfileDateTime() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IccReaderTest

testExtract_Tables() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest

testExtract_Width() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

testExtractMetadata() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegMetadataReaderTest

testExtractMetadataUsingInputStream() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegMetadataReaderTest

testExtractMspaint() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkReaderTest

testExtractPhotoshop() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkReaderTest

testExtractWithNullDataThrows() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testflat() - Method in class gov.nih.mipav.model.structures.jama.LUSOL

testflat() - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP

testFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM

testfreqz2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

testgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma

testGeoLocation() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest

testGetAutoFlashCompensationDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

testGetBackgroundColorDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetBytesEOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetBytesEOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetColorModeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

testGetColorTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetComponent() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testGetComponent_NotAdded() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

testGetComponent_NotAdded() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testGetComponentCharacter() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegComponentTest

testGetComponentDataDescription_InvalidComponentNumber() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

testGetComponentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

testGetCompressionTypeDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetDataPrecisionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

testGetDateCreated() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

testGetDateSent() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

testGetDetectedFaces() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PanasonicMakernoteDescriptorTest

testGetDigitalDateCreated() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

testGetDirectoryName() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest

testGetDirectoryWhenNotExists() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest

testGetExpirationDate() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

testGetFilterMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetFlashBiasDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.CanonMakernoteDescriptorTest

testGetFloat32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetFloat32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetFloat64() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetFloat64() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetHueAdjustmentDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

testGetImageHeight() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testGetImageHeightDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

testGetImageWidth() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testGetImageWidthDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

testGetInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest

testGetInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest

testGetInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt32_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt32_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt64() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest

testGetInt64() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt64() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt64_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt64_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInt8EOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetInt8EOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetInterlaceMethodDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetInteropIndexDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifInteropDescriptorTest

testGetInteropVersionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifInteropDescriptorTest

testGetIsSrgbColorSpaceDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetLensDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

testGetMessage_Nested() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.CompoundExceptionTest

testGetMessage_NonNested() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.CompoundExceptionTest

testGetNonExistentTagIsNullForAllTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testGetNullTerminatedString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetNullTerminatedString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetNumberOfComponents() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testGetNumberOfTables() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

testGetNumberOfTablesDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDescriptorTest

testGetPaletteHasTransparencyDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetReciprocal() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

testGetRecognizedFaces() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PanasonicMakernoteDescriptorTest

testGetReleaseDate() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

testGetString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetTextualDataDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetUInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetUInt16() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetUInt16_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetUInt16_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetUInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetUInt32() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetUInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetUInt8() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetUInt8_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testGetUInt8_OutOfBounds() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testGetUnitSpecifierDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

testGetYCbCrSubsamplingDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifThumbnailDescriptorTest

testGimpGreyscaleWithManyChunks() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngMetadataReaderTest

testGpsDate() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest

testGreenBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

TestH5WriteFloats(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

testHartley() - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

testHartley() - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2

testHasErrors() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest

TestHelper() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.TestHelper

testHplmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

testHplmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

testHplmap3() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

testID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

TESTIdentityParameterizationEverythingTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughLine

testImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola

testImage - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

testImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

DOCUMENT ME!

testImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

DOCUMENT ME!

testImageDir - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

TestImplicitSchurComplement(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest

testincog() - Method in class gov.nih.mipav.model.algorithms.Gamma

testIndexPlusCountExceedsIntMaxValue() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testIndic - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

testingDataLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testingPatches(ModelImage, int, int, int, float, float, boolean, BufferedWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

testingPatches(ModelImage, int, int, int, float, float, boolean, BufferedWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

testingPatches(ModelImage, int, int, int, float, float, boolean, BufferedWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

testingPatches(ModelImage, int, int, int, float, float, boolean, BufferedWriter, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

testingPatches(ModelImage, int, int, int, float, float, boolean, BufferedWriter, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

testingRateLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testingValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testInitialThreeParameterApproximation() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

testIntersection(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Test if the input point is inside the triangle mesh.

testIntersection(Vector3f, Vector3f, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Tests if the line segment specified by the two input points intersects the mesh.

testIntersectionMask(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

testIntersections(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Tests if the line segment determined by the two input end-points intersects the mesh.

testIntersections(TriMesh, Vector3f, Line3f[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Test if the input point is inside the mesh.

testInverseCDF() - Method in class gov.nih.mipav.model.algorithms.Gamma

TESTInvertPSDMatrixFullRank5x5() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTInvertPSDMatrixIdentity3x3() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTInvertPSDMatrixRankDeficient5x5() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testippft() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testippft3() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testIptc1BytesFromFile() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIptc2Photoshop6BytesFromFile() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIptcEncodingUndefinedIso() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIptcEncodingUnknown() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIptcEncodingUnknown2() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIptcEncodingUtf8() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcReaderTest

testIRadon() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testiRadon3() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testIsAncillary() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testIsCritical() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testIsolinesViz() - Method in class gov.nih.mipav.model.algorithms.ContourPlot

testIsPrivate() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testIsSafeToCopy() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.PngChunkTypeTest

testIsTypical() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

testIters - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet

If testIters > 0, check if the boundary is unchanged every testIters iterations.

testIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

testJoinArray() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.StringUtilTest

testJoinIterable() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.StringUtilTest

testJYZO() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

testLatticeMeshIntersection() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

testLeft - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

testLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

testLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

testLevelArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

testLevels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

TESTLevenbergMarquardtStrategyAcceptRejectStepRadiusScaling() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTLevenbergMarquardtStrategyCorrectDiagonalToLinearSolver() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testlgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma

testLifo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

testLoadFujifilmJpeg() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testLoadJpegWithoutExifDataReturnsNull() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest

testMain - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

TESTMatrixMatrixMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTMatrixTransposeMatrixMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTMatrixTransposeVectorMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTMatrixVectorMultiply() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testMaxParameter(String, float) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Tests that the entered parameter is above maxValue.

testMinParameter(String, float) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Tests that the entered parameter is below minValue.

testMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

testMode - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

testMode - Variable in class gov.nih.mipav.model.algorithms.CVODES

testMode - Variable in class gov.nih.mipav.model.algorithms.Lmmin

testMode - Variable in class gov.nih.mipav.model.algorithms.LsqFit

module LsqFit export curve_fit, standard_error, margin_error, confidence_interval, estimate_covar, make_hessian, Avv, # StatsBase reexports dof, coef, nobs, mse, rss, stderror, weights, residuals using Distributions using OptimBase using LinearAlgebra using ForwardDiff import NLSolversBase: value, jacobian import StatsBase import StatsBase: coef, dof, nobs, rss, stderror, weights, residuals import Base.summary include("geodesic.jl") include("levenberg_marquardt.jl") include("curve_fit.jl") end

testMode - Variable in class gov.nih.mipav.model.algorithms.NESolve

testMode - Variable in class gov.nih.mipav.model.algorithms.NL2sol

testMode - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

testMode - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

testMode - Variable in class gov.nih.mipav.model.algorithms.ODE

testMode - Variable in class gov.nih.mipav.model.algorithms.ODEEP

testMove(Vector3f, Vector3f[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Called from VOIManagerInterface when several VOIs are selected and moved as a group.

testMse() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testMsPaint16color() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest

testMsPaint24bpp() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest

testMsPaintGif() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.GifReaderTest

testMsssim() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testName - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem

testName - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest

testName - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RegularizationCheckingLinearSolver

testName - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest

testName - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback

testNikonMakernote_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

testNikonMakernote_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

testNikonMakernote_MatchesKnownValues() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

testNoInnerException() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.CompoundExceptionTest

testNQM() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testOptimizedAdjPPFT() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

TESTOrderedGroupsAddAndRemoveEveryThingFromOneGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsBulkRemove() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsBulkRemoveWithNoElements() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsEverythingInOneGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsMinNonZeroGroup() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsReverseOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsReverseOrderingWithEmptyOrderedGroups() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTOrderedGroupsStartInOneGroupAndThenSplit() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testOrderOfDifferentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest

testOrderOfSameType() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest

testOrientation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

testOverflowBoundsCalculation() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessTestBase

testOverflowBoundsCalculation() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testParameter(String, double, double) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Tests that the entered parameter is in range from [minValue, maxValue].

testParameter(String, double, double) - Static method in class gov.nih.mipav.view.MipavUtil

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Tests that the entered parameter is in range.

testParameter(String, double, double) - Method in class gov.nih.mipav.view.ViewJFrameImage

Tests that the entered parameter is in range.

testParameter(String, int, int) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Tests that the entered parameter is in range.

TestParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.TestParameterization

testParameterMin(String, double) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Tests that the entered parameter is larger than the specified value.

testParameterMin(String, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Tests that the entered parameter is larger than the specified value.

testParameterMin(String, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Tests that the entered parameter is larger than the specified value.

testParse() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest

testPhotoshopGif() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.GifReaderTest

testPoint(Point) - Method in class gov.nih.mipav.view.Rubberband

Tests the point for validity within the image.

testPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

x + y*xDim.

testPos - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

TestPosePrediction(CAAMModel, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest

Tests the prediction matrices ability to predict pose displacements.

testppft3() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testppft3_ref() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testprecondAdjPPFT3(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testProstateBoundaryFeatureTrain() - Method in class gov.nih.mipav.view.ViewJFrameImage

testProstateFeatures() - Method in class gov.nih.mipav.view.ViewJFrameImage

testProstateFeatures2D() - Method in class gov.nih.mipav.view.ViewJFrameImage

testProstateFeaturesClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage

testProstateFeaturesTrain() - Method in class gov.nih.mipav.view.ViewJFrameImage

testPsnr() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testPSNRB() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testRadon() - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

testRandomWeibull() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

testRase() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testRbtInteractive - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

testRbtRandom - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

testRead() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JfifReaderTest

testReadAdobeJpegMetadata1() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest

testReadAllSegments() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest

testReadDhtSegment() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest

testReadJpegSegments_InvalidData() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.IccReaderTest

testReadJpegSegmentWithNoExifData() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testReadSpecificSegments() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest

testrealArgument() - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

testrealArgument() - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic

testrealPsi() - Method in class gov.nih.mipav.model.algorithms.Psi

testRectmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testRectmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testRectmap3() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testRedBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

testRemoveSegment() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

testRemoveSegmentOccurrence() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

TESTReorderResidualBlockNormalFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTResidualBlockEvaluteWithLocalParameterizations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTResidualBlockEvaluteWithNoLossFunctionOrLocalParameterizations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testResolution() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifDirectoryTest

testRight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

TEString - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

testRmse() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testRND(int) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

testRoutine - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

testRoutine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

testRoutine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

testRoutine() - Method in class gov.nih.mipav.model.algorithms.RectangularConformalMap

TestRun - Class in gov.nih.mipav.view.renderer.WildMagic.AAM

TestRun - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity

Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.

TestRun() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun

TestRun() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TestRun

testSam() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testSample - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

testSample - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

testSample - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

testSample() - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

testScc() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testSegmentTypes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest

testSegmentWithMultipleOccurrences() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentDataTest

testSequentialWeibull2param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

testSequentialWeibull3param() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution

testSetAndGetIntArray() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSetAndGetMultipleTagsInSingleDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSetAndGetValue() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

testSetAndGetValue() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

testSetIntArrayGetByteArray() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSetSameTagMultipleTimesOverwritesValue() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSetStringAndGetDate() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSetStringGetInt() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testSigmaValues() - Method in class gov.nih.mipav.view.components.JPanelSigmas

Tests the un-normalized sigma values against pre-determined okay values.

testSkipEOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

TestSolver(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest

testSonyType1Makernote() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SonyType1MakernoteTest

testSonyType6Makernote() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SonyType6MakernoteTest

testSsim() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testSsimDownload() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testStackOverflowOnRevisitationOfSameDirectory() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testStripmap1() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

testStripmap2() - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

TESTSubsetParameterizationDuplicateParametersDeathTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTSubsetParameterizationGreaterThanSizeParameterIndexDeathTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTSubsetParameterizationNegativeParameterIndexDeathTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTSubsetParameterizationNormalFunctionTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTSubsetParameterizationProductParameterizationWithZeroLocalSizeSubsetParameterization1() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTSubsetParameterizationProductParameterizationWithZeroLocalSizeSubsetParameterization2() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testTable - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testTableModel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

testTableScrollPane - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

TestTerm(int, int, int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm

testThumbnailLength() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testThumbnailOffset() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testThumbnailXResolution() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testThumbnailYResolution() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifReaderTest

testTop - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

testToSimpleString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

testToString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testToString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.MetadataTest

testToString() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

testTrack(VOIContour) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

testTrack(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

testTrack(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

TESTTripletSparseMatrixAppendCols() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixAssignmentOperator() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixCopyConstructor() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixDefaultConstructorReturnsEmptyObject() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixResize() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TESTTripletSparseMatrixSimpleConstructorAndBasicOperations() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

testTrySkipEOF() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.SequentialAccessTestBase

testType(int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI

Determine if the min and max values are in the image types range.

testType(int, double, double) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

Determine if the min and max values are in the image types range.

testType(int, double, double) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

Determine if the min and max values are in the image types range.

testType(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

testType(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

testType(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

testType(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

testType(int, float) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

testTypicalHuffman() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegMetadataReaderTest

testUnderlyingInt() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

testUnicodeComment_ActualBytes() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUnicodeComment_Ascii() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUqi() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testUserCommentDescription_AsciiHeaderAsciiEncoding() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUserCommentDescription_BlankAscii() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUserCommentDescription_EmptyEncoding() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUserCommentDescription_ZeroLengthAscii1() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUserCommentDescription_ZeroLengthAscii2() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifSubIFDDescriptorTest

testUtility - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

testVIF() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testVIFP() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

testVSNR() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

testWindowsXpFields() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifIFD0DescriptorTest

testWithNonJpegFile() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegSegmentReaderTest

testXResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifIFD0DescriptorTest

testYBuffer - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

testYResolutionDescription() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ExifIFD0DescriptorTest

testZeroOverZero() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

teText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

tetragamma(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit

texcoord - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux

texcoordind - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux

texID - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas

text - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer

text - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams

tEXt - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

Denotes an ancillary MetadataExtractor.PngChunk that contains textual data, having first a keyword and then a value.

Text(String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Text

Creates a new Text object with the specified string and font configuration.

Text(String, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Text

Creates a new Text object with the specified string and font configuration.

Text(String, int, int, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Text

Creates a new Text object with the specified string and font configuration.

TEXT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

TEXT_HEADER - Static variable in class gov.nih.mipav.model.file.FileVOI

textA - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

textA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Static and arbitrary text field.

texta0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

texta1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta3 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta4 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta5 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

texta6 - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

TextAcquisitionMatrixFreq - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionMatrixFreqO - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionMatrixFreqS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionMatrixPhase - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionMatrixPhaseAxis - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAcquisitionTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textActualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

textActualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

textAdjustedSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

textAdvectionWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Advection weight parameter

textAFPintoDFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

textAFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textAlphaBright - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

textAlphaDim - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

textAmpFact - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

DOCUMENT ME!

textAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

DOCUMENT ME!

TextAngle - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAngleFlag1 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAngleFlag2 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextAngleFlag3 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textAnimationFrame - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

Note that an attempt to have DocumentListener for textAnimationFrame set the slider value was unsuccessful.

textAnimationFrame - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

Note that an attempt to have DocumentListener for textAnimationFrame set the slider value was unsuccessful.

TextAnnotation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textAnnotations(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Creates the text annotations (arrow)

textArea - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance.SelectionListener

textArea - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance

DOCUMENT ME!

textArea - Variable in class gov.nih.mipav.view.dialogs.JDialogText

DOCUMENT ME!

textArea - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

textB - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

textB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

textBeta - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

textBeta - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textBeta - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

textBins - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

textBlackEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

textBloodIntrinsicRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textBoundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textBoundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

textBoundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textBoundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

textBoxB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textBoxG - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textBoxR - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textBvalGradFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

DOCUMENT ME!

textC - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textcdfTruncation - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

textChanged - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog

DOCUMENT ME!

textChanged - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog

DOCUMENT ME!

textChangeX - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

textClassicStep - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textClassNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

DOCUMENT ME!

textClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

textClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

textClusters - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

textCoarseMax - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Max coarse iterations.

textCoarsenessThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

textColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

textColor - Variable in class gov.nih.mipav.model.structures.VOIText

This must be kept separate (but parallel) to the VOI color.

textColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

textColor - Variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

textColumnNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

textColumns - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textConf - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

textContourPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textContract - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textContrast - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

textContrastRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textControlPoints - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

textCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

DOCUMENT ME!

textCross - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

textCSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

textCursor - Static variable in class gov.nih.mipav.view.MipavUtil

Cursor for doing annotations.

textCurvatureWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Curvature weight parameter

TextDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textDecim - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

DOCUMENT ME!

textDegree - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

textDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

textDelta - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER

textDeltaT - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textDepth - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textDepth - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

textDerivative - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

textDestinationMean - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

DOCUMENT ME!

textDFPintoAFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

textDFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

textDiffusion - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

textDiffusitivity - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

textDigitNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textDilation - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textDim1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textDim2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textDim3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textDim4 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textDim5 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textDimX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textDimY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textDimZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textDistortionThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

DOCUMENT ME!

TextDOBDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextDOBMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextDOBYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textDtheta - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textDTIColorImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

textDTIimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

textDTIimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

textDWIDataimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

textdx - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textDx - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textdy - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textDy - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textdz - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textEc - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

TextEchoNumber - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextEchoTime - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textEdgeAttract - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textEdgeThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textEditable - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation

textEmbeddedDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE

DOCUMENT ME!

textEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

textEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

textEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

textEndTol - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textEndTol - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textEnhancedThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textEps - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

textEpsilon - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textErode - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

textErrorThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

textEValueImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

textEVimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

textExpand - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textExpected - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

textExpectedExtentX - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the expected extent X

textExpectedExtentY - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the expected extent Y

textExpectedExtentZ - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the expected extent Z

textExpFuzzifier - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

DOCUMENT ME!

textExpo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

textExpo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

textExpo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

textF1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

textF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

textF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

textF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

textF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

textF2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

textFAimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

textField - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI

textField - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog

DOCUMENT ME!

textField - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog

DOCUMENT ME!

textField - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent

textField - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI

textFieldAngleThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textFieldAngleThreshold - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

textFieldAxialVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Text field for each VOI and ply file.

textFieldBallRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textFieldBallRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

textFieldClusteringRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textFieldClusteringRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

textFieldCoronalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Text field for each VOI and ply file.

textFieldCoronalVOI - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI

Text field for each VOI and ply file.

textFieldEndVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldEndVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldEndVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldEndVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldEndVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldEndVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

textFieldImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

textFieldImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

textFieldImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

textFieldImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

textFieldImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

textFieldImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

textFieldImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

textFieldImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

textFieldImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

textFieldImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

textFieldImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

textFieldImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

textFieldImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

textFieldImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

textFieldImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

textFieldImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

textFieldImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

textFieldInputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textFieldInputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

textFieldKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs

textFieldMidVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldMidVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldMidVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldMidVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldMidVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldMidVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

textFieldModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

textFieldOutputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textFieldOutputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

textFieldPlyFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Text field for each VOI and ply file.

textFieldPlyFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI

Text field for each VOI and ply file.

textFieldSagittalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Text field for each VOI and ply file.

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

saved 2D slices atlas dir.

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

saved 2D slices atlas dir.

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

textFieldSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

saved 2D slices atlas dir.

textFieldStartVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldStartVOIAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldStartVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldStartVOICoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldStartVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

textFieldStartVOISagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

textFieldSVMModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

textFile - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify

DOCUMENT ME!

TEXTFILE - gov.nih.mipav.model.algorithms.CeresSolver.DumpFormatType

textFill - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

textFill - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

DOCUMENT ME!

textFills - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

textFilterLength - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

DOCUMENT ME!

textFirstOctave - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textFirstSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textFirstTimePeriod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textFittingLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

textFlipAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

TextFlipAngle - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textFont - Variable in class gov.nih.mipav.model.structures.VOIText

The font is stored here so that it does not have to be reallocated on each redraw.

TextFOVH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextFOVV - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textFramesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

textFramesPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

textFU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

textFU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textFV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

textFV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

textGamma - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textGamma - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textGamma - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textGauss - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

textGaussian - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

textGaussian - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

textGaussianStdDev - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

textGaussianWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

textGaussScale - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.components.JPanelSigmas

gui, sigma value

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

gui, sigma value

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

textGaussX - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.components.JPanelSigmas

gui, sigma value

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

gui, sigma value

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

textGaussY - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.components.JPanelSigmas

gui, sigma value

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

gui, sigma value

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

textGaussZ - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

textgmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textgmax - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

textgmax - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

textgmid - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

DOCUMENT ME!

textgmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textgmin - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

textgmin - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

textGMScale - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Gradient Magnitude Scale factor

textGreaterEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textGVFIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textGVFIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textHammingDistanceThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

textHardCoefficient - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textHardSearchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textHardSimilar - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textHardStep - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textHeight - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textHematocrit - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textHighGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

textHighThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

textHighTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

textHistogramBins - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

textHistogramThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

textICNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

textImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

textImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

textImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

textImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

TextImageNumber - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextImageNumber2 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textInEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

textIniter - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textIniter - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textInitial0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textInitial1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textInitial2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textInitialGlobal - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textInitialKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

textInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

textInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

textInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

textInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

textInStart - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

textIntensity - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Light intensity textfield.

textIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Light intensity textfield.

textInterpNPts - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

textInterpNPts - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

textIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

textIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

textIterations2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textIterativeGlobal - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textIterativeGlobal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textIterativeKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textIters - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

DOCUMENT ME!

textIters - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Number of Iterations

textIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

difference between x,y resolutions (in plane) and z resolution (between planes).

textIters - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

textItr - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

textk - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

DOCUMENT ME!

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

DOCUMENT ME!

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

textK - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

textKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

textKernel - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textKernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

textKernelDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogClose

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat

DOCUMENT ME!

textKernelSize - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

textKernelSizeClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

textKernelSizeErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode

DOCUMENT ME!

textKernelSizeOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

textKSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

textL - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

DOCUMENT ME!

textLabelBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Burning point label array.

textLambda - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textLambda - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textLambda - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textLaplacianWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Laplacian weight parameter

textLastSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textLastTimePeriod - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textLesserEqual - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

textLinePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textListFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

DWI .list location:

textLocX - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian

DOCUMENT ME!

textLocY - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian

DOCUMENT ME!

textLocZ - Variable in class gov.nih.mipav.view.dialogs.JDialogHessian

DOCUMENT ME!

textLowerXmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textLowerYmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textLowerZmm - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textLowGain - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

textLowThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

DOCUMENT ME!

textLowTruncated - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

textm - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

textM - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textMagnification - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textMaskimage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

mask image location:

textMaskSD - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

discriminate between noise and the underlying image.

textMatch - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

textMatchFile - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

textMatchingThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

textMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

DOCUMENT ME!

textMax - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects

DOCUMENT ME!

textMax - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

DOCUMENT ME!

textMaxArea - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER

textMaxB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textMaxConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMaxConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMaxConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMaxConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMaxConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMaxConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMaxDiff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

textMaxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Max Distance parameter

textMaxDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

textMaxEMIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

textMaxEvolution - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Maximum Evolution steps

textMaxG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textMaximum - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

textMaximumDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

DOCUMENT ME!

textMaxiter - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

textMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

textMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

textMaxIter - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textMaxIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textMaxMAPIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM

textMaxNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

DOCUMENT ME!

textMaxNoise2 - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

textMaxR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textmaxRz - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textmaxTx - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textmaxTy - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textMaxVariation - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER

textMed - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

DOCUMENT ME!

textMin - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects

DOCUMENT ME!

textMin - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

DOCUMENT ME!

textMinArea - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER

textMinB - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textMinConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMinConstr0 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMinConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMinConstr1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMinConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textMinConstr2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textMinDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

textMinDiversity - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER

textMinG - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textMinimum - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

textMinPixels - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

textMinR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

textminRz - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textMinSize - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

DOCUMENT ME!

textminTx - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textminTy - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textMinwave - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

textModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

textModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

TextModelName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textMu - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

textMu - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion

textMult - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

textMult - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textmw1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

textmw2 - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

textNClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

textNClasses - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

textNClasses - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textNeighbors - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE

textNFirst - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textNiter - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

textNIter - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2

DOCUMENT ME!

textNIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate

DOCUMENT ME!

textNIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

DOCUMENT ME!

textNIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

textNIterClose - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

textNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat

DOCUMENT ME!

textNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogClose

DOCUMENT ME!

textNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

DOCUMENT ME!

textNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen

DOCUMENT ME!

textNIterD - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat

DOCUMENT ME!

textNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat

DOCUMENT ME!

textNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogClose

DOCUMENT ME!

textNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

DOCUMENT ME!

textNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen

DOCUMENT ME!

textNIterE - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat

DOCUMENT ME!

textNIterErode - Variable in class gov.nih.mipav.view.dialogs.JDialogErode

DOCUMENT ME!

textNIterOpen - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

textNLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textNOctaves - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textNoise - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

textNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

textNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

textNoiseStandardDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

textNorm - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

textNormThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textNPix - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode

DOCUMENT ME!

textNPyramid - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textNscales - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textNScales - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion

textNScales - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents

DOCUMENT ME!

textNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

DOCUMENT ME!

textNumberImages - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

textNumberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion

DOCUMENT ME!

textNumberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the number of deconvolution iterations:

textNumberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

textNumberIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

DOCUMENT ME!

textNwarps - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textnx - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textny - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textnz - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textObjectiveNumericalAperature - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the objective numerical aperature:

textOctaves - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

textOctreeDepth - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textOffset - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textOffsetDistance - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

textOffsetDistance - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textOneJacobiIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textOneSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textOperator - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

textOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

TextOrganization - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textOrient - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textOrientations - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

textOriginalExtentX - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for displaying the original extent X

textOriginalExtentY - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for displaying the original extent Y

textOriginalExtentZ - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for displaying the original extent Z

textOutEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

textOutiter - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textOutiter - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textOutputFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

textOutStart - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

textP1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textP2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog

DOCUMENT ME!

textPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog

DOCUMENT ME!

textPatchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel

TextPatientAge - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextPatientAgeUnits - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextPatientID - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextPatientName - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextPatientPosition - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextPatientSex - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textPeakThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textPercent - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

textPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

textPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

textPointThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

DOCUMENT ME!

textPotential - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment

textPropagationWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Propagation weight parameter

textPrune - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

DOCUMENT ME!

textR - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

textRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

textRadius - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

textReceiver - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

textRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

textRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

textRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

textReferenceSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

textRefractiveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the index of refraction:

textRegIter - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

textRegLevels - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

textRegularization - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

textRemap - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

textRemap - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat

TextRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.TextRenderer

TextRepetitionTime - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textRes1 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textRes1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textRes2 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textRes2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textRes3 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

DOCUMENT ME!

textRes3 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textRes3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textRes4 - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

DOCUMENT ME!

textRes4 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textRes4 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textRes5 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textRes5 - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

textResampling - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textRescaling - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

textRescaling - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

textResX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textResY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textResZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textRowNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

DOCUMENT ME!

textRows - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textRs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

textRs - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

textRs - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

textRs - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

textRs - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

textRx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textRx - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textRy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textRy - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textRz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textRz - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

texts - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

textSamplePerNode - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textSave - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

textSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

textSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

textSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

textScale - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

textScale - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textScale1 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE

textScale1 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

textScale2 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE

DOCUMENT ME!

textScale2 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

DOCUMENT ME!

textScale3 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE

textScale3 - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation

TextScanNumberA - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextScanNumberB - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextScanStartTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextScanStartTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextScanStartTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textse - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment

textSearchWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

textSegmentNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

TextSequence - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textShape - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textShininess - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Light shinness textfield.

textShowProgress - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the number of intermediate images to show:

textShrink - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textShrink - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection

textSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

textSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector

textSigma - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

textSigmaMaxX - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaMaxY - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaMaxZ - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaMinX - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaMinY - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaMinZ - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

textSigmaon - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textSigmaX - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

textSigmaY - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

textSigmoiBeta - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Sigmoid Beta parameter

textSigmoidAlpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Sigmoid Alpha parameter

textSigmoidMax - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Sigmoid Max parameter

textSigmoidMin - Variable in class gov.nih.mipav.view.dialogs.JDialogFastMarching

Sigmoid Min parameter

textSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

textSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

textSignal - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

textSignal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textSimilarityWindowSide - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

textSize - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text

textSize - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textSizeX - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

textSizeY - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

textSizeZ - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

textSKx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSKx - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textSKy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSKy - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textSKz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSKz - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

textSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

DOCUMENT ME!

textSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

TextSlicePosition - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textSliceThickness - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

TextSliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textSmoothing - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

textSmoothness - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

textSmoothness - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

textSoft - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

textSolverDivide - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

textSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

textsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

textsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textsrcImage2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textSrcThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textSSize - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

textSt1 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textSt2 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textSt3 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textSt4 - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

textStart - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textStartNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

textStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Static and arbitrary text field.

textStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Static and arbitrary text field.

TextStation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textSTDDeviation - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

textSteeringStep - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textStep - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

textString - Variable in class gov.nih.mipav.model.structures.VOIText

The String to be displayed.

textString - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

textStructuring - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

TextStudyImageNumber3 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextStudyNumber - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextStudyNumber2 - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textSU - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

textSU - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textSV - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

textSV - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textSx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSx - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textSy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSy - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textSz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textSz - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textT - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Text fields that display the slice number next to the sliders.

textT - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Text fields that display the slice number next to the sliders.

textT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Text fields that display the slice number next to the sliders.

textT2image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

DOCUMENT ME!

textT2image - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization

Text boxes for the tensor, color image, eigen vector, eigen value, and functional anisotropy files:

TextTablePosition - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textTagElement - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

textTagGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

DOCUMENT ME!

textTagName - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

textTagValue - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

textTau - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

texttd2Image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

texttd3Image - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

textTDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

textTestIters - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

textTheta - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

textTheta - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textTheta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textTheta1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textTheta2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

textThickness - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

textThres1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

textThres1 - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

textThres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

textThres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

textThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

textThresh - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

DOCUMENT ME!

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

textThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

textThreshold1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

Text fields for lower & upper thresholds and fill values.

textThreshold1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

textThreshold1 - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

Text fields for lower & upper thresholds and fill values.

textThreshold2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

textThreshold2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

textThreshold2 - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

textThreshold3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

textTimeBetweenShots - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

TextTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

TextTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision

DOCUMENT ME!

textTimesFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textTissueIntrinsicRelaxivityRate - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

textTol - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE

textTol - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textTol - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textTol - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

textTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

textTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

textTransformDimX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTransformDimY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTransformDimZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTransformResX - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTransformResY - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTransformResZ - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

textTwoJacobiIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textTwoSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textTx - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textTx - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textTy - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textTy - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textTz - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

textTz - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

textUpscale - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

texture - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Reference to 3D texture node for the volume.

texture - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Texture mapped image.

TEXTURE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Displays the ModelImage with 3D Texture-mapping :.

TEXTURE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Paint into the 3D texture map:

TEXTURE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Paint into the 3D texture map:

textureAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

textureAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

DOCUMENT ME!

textureAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture

DOCUMENT ME!

textureAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis

textureAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Algorithm to save Hurst index and Haralick features.

textureAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

textureAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textureAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

TextureBasis() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Returns the texture PCA.

TextureEnabled - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

TextureInstance(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Generates a texture based on a set of model parameters.

TextureMovie(String, int, double, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer

Generates movies files showing each mode of texture variation by adjusting the each mode of variation to +/- 'range' times in 2*'step'+1 steps.

TextureOn - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

TexturePCA() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Returns the texture PCA.

TextureSculptor - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Volume Sculpting for the VolumeTexture Rendering.

TextureSculptor(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor

Constructor:

textureSegAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

DOCUMENT ME!

TextureTF() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Return texture transfer function.

textVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

textVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

textVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

textVal1 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

textVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

textVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

textVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

textVal2 - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

textValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

Used for single value, real part of complex, and red part of color

textValue - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

textValueB - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

Used for blue part of color

textValueB - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

textValueG - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

textValueI - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

Use for imaginary part of complex and green part of color

textVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation

the VOI that contains the VOIText.

textVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

textVOIFile2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

textVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

DOCUMENT ME!

textVolumeLength - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

DOCUMENT ME!

textVoxelLength - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

textWarps - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textWavelength - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

User-Interface for entering the sample wavelength:

textWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

DOCUMENT ME!

textWeightDiff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

textWhiteStart - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

DOCUMENT ME!

textWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textWienerSearchSize - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textWienerSimilar - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textWienerStep - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

textWindow - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

textWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

textWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

textWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

textWindowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

textWindowSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

textX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Text fields that display the slice number when slider moves.

textX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Text fields that display the slice number next to the sliders.

textX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Text fields that display the slice number next to the sliders.

textXDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

textXDim - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

textXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

X, Y, Z inverse text field.

textXmin - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Text fields that display the slice number when slider moves.

textY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Text fields that display the slice number next to the sliders.

textY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Text fields that display the slice number next to the sliders.

textYDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

textYDim - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

textYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

X, Y, Z inverse text field.

textYmin - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

textZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Text fields that display the slice number when slider moves.

textZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Text fields that display the slice number next to the sliders.

textZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Text field displaying the percentage of the slider.

textZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Text fields that display the slice number next to the sliders.

textZDim - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

textZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

textZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

textZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

textZfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

textZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

X, Y, Z inverse text field.

textZmin - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

texUnitStateBXY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Texture creating appearance for the "back" of the image.

texUnitStateFXY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Texture creating appearance for the "front" of the image.

tf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

Time between frames (volumes) in seconds (0.1 - 30.0)

tfActiveIndex - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

DOCUMENT ME!

tfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

tfBase - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

tfIdentity - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

tfLookUp - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

tform - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData

tform - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Affine

tform - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tps

Tform() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Tform

tform_err_sq(SIFT3D.Affine, SIFT3D.Mat_rm, SIFT3D.Mat_rm, int) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

tform_type() - Constructor for enum gov.nih.mipav.model.algorithms.SIFT3D.tform_type

tFrame - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

tfUniformStretch - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

tfWavelet - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

tg - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

TG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

TG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

tg_ghost - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

TGA - Static variable in class gov.nih.mipav.model.file.FileUtility

extension: .tga.

TGA_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

tga_writeheader(RandomAccessFile, int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileJPEG2000

tgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

tgetv0 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tgmo(double[][][], double[], int[][], int, double, int, double[][], String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

Compute the texture gradient at a single scale and multiple orientations

tGrid - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tgs_z_factor - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

tgso(double[][], int[][], int, double, double, String, double, double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

Compute the texture graident at a single orientation and scale

th - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

number of tiles in heigth

TH - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper

THDATA(double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

THead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

THERMAL_HEAT_PROBE - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

The thermal heat type probe, which is in blue color.

thermalProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Reference to the thermal heat probe geometry structures.

thermalProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

The root transform group of the thermal probe.

ThermalProbe - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview

Title: ThermalProbe

ThermalProbe() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

Constructor to initialize the thermal probe geometry.

thermalProbeBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

The root branch group of the theraml probe.

THERMOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality thermography.

THERMOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality thermography.

theta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

Flip angle in degrees (0.0 - 90.0)

theta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

theta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute

theta - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

theta - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

theta - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

theta - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

theta - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

theta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint

theta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint

theta - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.LEG

theta - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

theta - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

theta_pre - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

theta0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

theta0Num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid

theta0Num - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

DOCUMENT ME!

theta0Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

DOCUMENT ME!

theta1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji

Angular equivalence of black band, 0 <= theta1 <= PI/2

theta1 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Angular equivalence of black band, 0 <= theta1 <= PI/2

theta2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji

Angular equivalence of white band, 0 <= theta2 <= PI/2

theta2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

Angular equivalence of white band, 0 <= theta2 <= PI/2

thetaArray - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice

thetaMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

thetaMAX - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D

thetaMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

thetaXY - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation

DOCUMENT ME!

thetaXZ - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation

DOCUMENT ME!

thetaZY - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation

DOCUMENT ME!

thick - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

DOCUMENT ME!

thickness - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.LineLabel

thickness - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator

thickness - Variable in class gov.nih.mipav.model.file.FileGESigna4X

thickness - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

thickness - Variable in class gov.nih.mipav.model.structures.VOI

The thickness of the VOI lines

thickness - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

thickness0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

thickness1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.SegmentDetails

thicknesses - Variable in class gov.nih.mipav.model.file.FileNRRD

Used to obtain MIPAV sliceThickness value

thicknessSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

thin(int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

This a thinning algorithm used to do half of one layer of thinning (which layer is dictated by whether pass is even or odd).

thin(int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

This a thinning algorithm used to do half of one layer of thinning (which layer is dictated by whether pass is even or odd).

thin(int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

This a thinning algorithm used to do half of one layer of thinning (which layer is dictated by whether pass is even or odd).

thinAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogThinning2D

DOCUMENT ME!

third - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet

third - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

thirdColor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

thirdValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal

This value equal one third (0.3333333).

thirdValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray

This value equal one third (0.3333333).

THIRTY - Variable in class gov.nih.mipav.model.algorithms.CVODES

thisFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

thisFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

thisFrame - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

thisOrientation - Variable in class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage

thk_disclmr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

578 Slice Thickness.

thread - Variable in class gov.nih.mipav.view.ImageRegistryMonitor

DOCUMENT ME!

thread - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

DOCUMENT ME!

thread_idx - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.computeTreePermutationImportanceInThread

thread_idx - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.growTreesInThread

thread_idx - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictInternalInThread

thread_idx - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.predictTreesInThread

thread_ranges - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

threadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

threadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

threadedGenerateDataForFitting() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

threadedGenerateDataForReconstruction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

threads - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

threadStopped - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBase

Flag indicating whether or not the thread is stopped.

ThreadUtil - Class in gov.nih.mipav.util

ThreadUtil() - Constructor for class gov.nih.mipav.util.ThreadUtil

THREE - Variable in class gov.nih.mipav.model.algorithms.CVODES

threeButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

threeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

threeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

DOCUMENT ME!

threeByteInteger - Variable in class gov.nih.mipav.model.file.FileRaw

threeByteInteger - Variable in class gov.nih.mipav.model.file.FileRawChunk

threeByThree - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

threeD - Variable in class gov.nih.mipav.view.dialogs.JDialogMask3D4D

Radio button indicating that the image should only be masked in 3D

ThreeD - gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode

THREED_LEFT_HANDED - Static variable in class gov.nih.mipav.model.file.FileNRRD

Any left-handed three-dimensional space.

THREED_LEFT_HANDED_TIME - Static variable in class gov.nih.mipav.model.file.FileNRRD

Like THREEE_LEFT_HANDED, but with time along the fourth axis.

THREED_RIGHT_HANDED - Static variable in class gov.nih.mipav.model.file.FileNRRD

Any right-handed three-dimensional space.

THREED_RIGHT_HANDED_TIME - Static variable in class gov.nih.mipav.model.file.FileNRRD

Like THREED_RIGHT_HANDED, but with time along the fourth axis.

threeDButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

threef0(double, double, double, double, double[]) - Method in class gov.nih.mipav.model.algorithms.Cephes

ThreeParameterCostFunctorTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

ThreeParameterCostFunctorTestTestThreeParameterJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

ThreeParameterCostFunctorTestTestThreeParameterJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

ThreeParameterCostFunctorTestTestThreeParameterResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

ThreeParameterCostFunctorTestTestThreeParameterResiduals() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

ThreeParameterCostFunctorTestThreeParameterJacobianWithFirstAndLastParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

ThreeParameterCostFunctorTestThreeParameterJacobianWithFirstAndLastParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

ThreeParameterCostFunctorTestThreeParameterJacobianWithSecondParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

ThreeParameterCostFunctorTestThreeParameterJacobianWithSecondParameterBlockConstant() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

threeParameterFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.threeParameterFittingCostFunction

threePDownHillSimplex(double[], double[], double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

threeTField - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

thres1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

thres1 - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

thres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

thres2 - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

THRESH - Variable in class gov.nih.mipav.model.algorithms.CVODES

threshAtRobustMaxAndMin(VabraVolumeCollection) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

threshField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold

DOCUMENT ME!

threshFillBF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

threshFillBF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

threshFillF - Variable in class gov.nih.mipav.view.JPanelHistogram

displays the threshold fill-value

threshFillF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

threshold related.

threshFillF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

threshold related.

threshholding - Variable in class gov.nih.mipav.model.file.FileSVS

threshholding - Variable in class gov.nih.mipav.model.file.FileTiff

THRESHHOLDING - Static variable in class gov.nih.mipav.model.file.FileSVS

THRESHHOLDING - Static variable in class gov.nih.mipav.model.file.FileTiff

threshLowerBF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

threshLowerBF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

threshLowerF - Variable in class gov.nih.mipav.view.JPanelHistogram

displays the threshold lower-value

threshLowerF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

threshold related.

threshLowerF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

threshold related.

threshLowerF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

threshold related.

threshMax1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

628 Upper range of pixels 1.

threshMax2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

636 Upper range of pixels 2.

threshMin1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

624 Lower range of pixels 1.

threshMin2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

632 Lower range of pixels 2.

threshold - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass

Array of two thresholds. threshold[0] = Minimum threshold, threshold[1] = Maximum threshold.

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

This is a fast implementation of the marching squares algorithm for finding isolines (lines of equal color) in an image.

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Values at less than threshold are treated as part of the background.

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders

threshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual

Array of two thresholds. threshold[0] = Minimum threshold, threshold[1] = Maximum threshold.

threshold - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

threshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

threshold - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal

Only average values above threshold.

threshold - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray

Only average values above threshold.

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

threshold - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

threshold - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

threshold() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

threshold() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

threshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Convert the mask image specified theshold values.

Threshold(String) - Constructor for enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

THRESHOLD - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

Thresholded transfer function mode (grayscale).

threshold_firm(double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

threshold_firm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

threshold_firm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.HaarTransform

threshold_firm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SlantTransform

threshold_firm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform

threshold_firm(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

threshold_GT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

threshold_kernel - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

threshold1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

The minimum values that are considered as data values.

threshold1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

threshold1 - Variable in class gov.nih.mipav.view.PatientSlice

Threshold value:.

threshold1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

threshold2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold2 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

threshold2 - Variable in class gov.nih.mipav.view.PatientSlice

Threshold value:.

threshold2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

threshold3 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting

thresholdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

thresholdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

DOCUMENT ME!

thresholdAlgo - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

DOCUMENT ME!

thresholdAlgoRGB - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

thresholdAverage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal

If true only average values above threshold.

thresholdAverage - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray

If true only average values above threshold.

thresholdAverage - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

thresholdB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB

DOCUMENT ME!

thresholdB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB

DOCUMENT ME!

thresholdB - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

thresholdB - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

thresholdBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

thresholdButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Toggle buttons for transfer, threshold and threshold inverse.

thresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

thresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

thresholdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

DOCUMENT ME!

thresholdCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

ThresholdChoiceListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener

thresholdField - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

thresholdG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB

DOCUMENT ME!

thresholdG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB

DOCUMENT ME!

thresholdG - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

thresholdG - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

ThresholdGamma - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

thresholdGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

thresholdGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

thresholdGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

thresholdGT() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

thresholdImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

thresholdingIsNecessary - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

threshold the image while processing.

thresholdingType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

thresholdingType - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdingTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdingTypeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

thresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

thresholdLabels1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

thresholdLabels1 - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

thresholdLabels2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

thresholdLabels2 - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

thresholdLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

thresholdLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection

DOCUMENT ME!

thresholdLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

thresholdLevel - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

thresholdLowPass - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

thresholdLowPass - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdLowPassCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

thresholdMethod - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

thresholdMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

thresholdMode - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

The current threshold mode (dual or dual inverse) or NO_THRESHOLD if not in theshold mode.

thresholdMultiplier - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

thresholdMultiplier - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdMultiplierLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdMultiplierText - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

thresholdOn1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

thresholdOn1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

thresholdOn1 - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

If true, the matrix of linear correlation coefficients is taken along color 1 at unity spacings.

thresholdPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

thresholdParametersLeftPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

thresholdParametersPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

thresholdParametersRightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

thresholdProcPixel(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

process pixel at pixel pix using data from the srcBuffer. builds a list of monochromatic image values of the neighboring pixels image values (using a map generated by the kernelMask), builds the histogram of those values, clamps when necessary, then scales the cumulative histogram, getting the brightness back out.

thresholdR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB

Three arrays (R,G,B) containing minimum and maximum threshold for each channel.

thresholdR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB

Three arrays (R,G,B) containing minimum and maximum threshold for each channel.

thresholdR - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

lower [0] and upper [1] thresholds for RGB.

thresholdR - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

lower [0] and upper [1] thresholds for RGB.

thresholdRadioGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

radio groups

thresholdSelected - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

If true don't use pixels below thresholdLevel that are 4 or 6 neighbor connected to boundary pixels below thresholdLevel.

thresholdSelected - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection

If true, don't use periphery pixels below threshold or pixels below threshold connected to periphery pixels below threshold thru a 4 neighbor chain of below threshold pixels.

thresholdSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

thresholdSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

thresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

thresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

thresholdTextField - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

thresholdType - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

thresholdType - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

thresholdType - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

thresholdValueInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold

DOCUMENT ME!

threshUpperBF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

threshUpperBF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

threshUpperF - Variable in class gov.nih.mipav.view.JPanelHistogram

displays the threshold upper-value

threshUpperF - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

threshold related.

threshUpperF - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

threshold related.

threshUpperF - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

threshold related.

threshValue - Variable in class gov.nih.mipav.model.algorithms.MotionDetection

threshValue - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

thrLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

thumbnail - Variable in class gov.nih.mipav.model.file.FileImageXML

Thumbnail data and AWT Image.

thumbnail - Variable in class gov.nih.mipav.model.file.FileInfoCZI

thumbnail - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

thumbnail - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

DOCUMENT ME!

thumbnail - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

thumbNail - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

Thumbnail(int, int, int[]) - Constructor for class gov.nih.mipav.model.file.FileImageXML.Thumbnail

Default constructor for the Thumbnail.

thumbnailBuffer - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

thumbnailBufferIndex - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

thumbnailOffset - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

thumbnailOption - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

thumbNailX - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

thumbnailXDim - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

thumbNailY - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

thumbnailYDim - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

ThunderScanCompression - Variable in class gov.nih.mipav.model.file.FileSVS

ThunderScanCompression - Variable in class gov.nih.mipav.model.file.FileTiff

ThunderScanDecompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileSVS

ThunderScanDecompresser(byte[], byte[], int, int) - Method in class gov.nih.mipav.model.file.FileTiff

ThurberCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.ThurberCostFunction

ThurberData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest

ThurberObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest

ti - Variable in class gov.nih.mipav.model.file.FileGESigna4X

ti - Variable in class gov.nih.mipav.model.file.FileInfoCOR

DOCUMENT ME!

ti - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

ti - Variable in class gov.nih.mipav.model.file.FileInfoMGH

ti - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

tickColor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

ticklabels - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel

tickMarkGenerator - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

tickMarkLabels - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

ticks - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

ticks - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel

TIF_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000

Tiff - gov.nih.mipav.model.file.MetadataExtractor.FileType

TIFF - Static variable in class gov.nih.mipav.model.file.FileUtility

TIFF file; tagged header. extension: .tif, .tiff

TIFF - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

TIFF_DIGIT_NUMBER - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the parameter indicating the number of digits to use in tiff image file naming.

TIFF_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility

Multiple files of TIFF images.

TIFF_SET_WRITE_PACK_BIT - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the tiff set write pack bit parameter.

TIFF_START_NUMBER - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the tiff initial image number parameter.

TiffDataFormat() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

TiffDataFormat(String, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

tiffEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

TIFFLZWDecoder - Class in gov.nih.mipav.model.file

A class for performing LZW decoding.

TIFFLZWDecoder(int, int, int) - Constructor for class gov.nih.mipav.model.file.TIFFLZWDecoder

Creates a new TIFFLZWDecoder object.

tiffPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

TiffProcessingException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.TiffProcessingException

TiffProcessingException(String, Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.TiffProcessingException

TiffProcessingException(Throwable) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.TiffProcessingException

TiffReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.TiffReader

TIFFYCbCrInputStream(FileSVS.IntFilterInputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream

TIFFYCbCrInputStream(FileTiff.IntFilterInputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream

tiflat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tiindex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tildeLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

tile - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Tile number

TILE_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TILE_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

TILE_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

TILE_BYTE_COUNTS - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tile_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_codestream_index_t

tile_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters

tile number ot the decoded tile

tile_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dparameters_t

tile number ot the decoded tile

TILE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TILE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

TILE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

TILE_LENGTH - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

TILE_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TILE_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

TILE_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

TILE_OFFSETS - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

TILE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TILE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

TILE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

TILE_WIDTH - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileByteCounts - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileByteCounts - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileByteCounts - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileByteCounts - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileByteNumber - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileByteNumber - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileByteNumber - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileByteNumber - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileIndex - Variable in class gov.nih.mipav.model.file.FileJPEG2000

tileLength - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileLength - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileLength - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileLength - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileMaxByteCount - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileMaxByteCount - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileMaxByteCount - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t

tile index

tileno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_info_v2_t

number (index) of tile

tileOffsetNumber - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileOffsetNumber - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileOffsetNumber - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileOffsetNumber - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileOffsets - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileOffsets - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileOffsets - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileOffsets - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tiles - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_image_t

tilesAcross - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tilesAcross - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tilesAcross - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tilesAcross - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tilesDown - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tilesDown - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tilesDown - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tilesDown - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tilesPerImage - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tilesPerImage - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tilesPerImage - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tilesPerImage - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tilesPerSlice - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tilesPerSlice - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tilesPerSlice - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tilesPerSlice - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileTemp - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileTemp - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileTemp - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileTemp - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tileWidth - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

tileWidth - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tileWidth - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tileWidth - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tiltAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

DOCUMENT ME!

tiltAngle - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection

tiltAngle - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

tiltAngles - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

tilticon - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

tImage() - Constructor for class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.tImage

tImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage

tImageSlider

tImageSlider - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Slider for 4D images, time dimension.

time - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel

DOCUMENT ME!

time - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i

DOCUMENT ME!

time - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p

DOCUMENT ME!

time - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s

DOCUMENT ME!

time - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics

time - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

time - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace

DOCUMENT ME!

time - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2

Independent variable for which the inverse Laplace transform has to be computed. time value should be greater than zero.

time - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd

resulting vector of times.

time - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info

time - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

time - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

time - Variable in class gov.nih.mipav.model.file.XMLParameter

Parameter time.

time - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Time to wait for the next mouse event.

time - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera

Time to wait for the next mouse event.

time - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Time to wait for the next mouse event.

time - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Standard mouse tread waiting time.

time - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

time - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

time - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

tIME - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

TIME - gov.nih.mipav.model.file.FileInfoBase.UnitType

TIME - gov.nih.mipav.view.ViewJSlider.SliderType

TIME - Static variable in class gov.nih.mipav.view.ViewJSlider

TIME_SLICE - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase

Label for the parameter indicating which time slice to save when saving 4D images in a format which only supports 3D image writing.

timeAcquired - Variable in class gov.nih.mipav.model.file.FileInfoFits

timeDifferenceX - Variable in class gov.nih.mipav.model.file.FileInfoLSM

timeDifferenceX - Variable in class gov.nih.mipav.model.file.FileLSM

timeDifferenceY - Variable in class gov.nih.mipav.model.file.FileInfoLSM

timeDifferenceY - Variable in class gov.nih.mipav.model.file.FileLSM

timeDifferenceZ - Variable in class gov.nih.mipav.model.file.FileInfoLSM

timeDifferenceZ - Variable in class gov.nih.mipav.model.file.FileLSM

timeDim - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

timeElapsed - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

timeElapsed - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

timeElapsed - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

timeElapsed - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

timeEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

timeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

timeField - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

timeFrame - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

timeFrameNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeFrames - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeFunction - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace

resulting vector of real-space values.

timeFunction - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd

resulting vector of real-space values.

timeIncrement - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

DOCUMENT ME!

timeInterval - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

timeInterval - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

timeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

timeLater - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

timeLater - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

timeLater - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

timeLater - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

timeLoaded - Variable in class gov.nih.mipav.plugins.ManifestFile

timeNow - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

timeNow - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

timeNow - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

timeNow - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

timeOrigin - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

timeOrigin - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

timeout - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Socket

DOCUMENT ME!

timeoutBetweenProjectionTransfers - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

TimeoutThread - Class in gov.nih.mipav.model.structures

Thread which sleeps for a pre-determined amount of time, then calls a method (if the thread hasn't had its shutdown method called).

TimeoutThread(long) - Constructor for class gov.nih.mipav.model.structures.TimeoutThread

Creates a new ReminderThread object.

timePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices

DOCUMENT ME!

timeProcessed - Variable in class gov.nih.mipav.model.file.FileInfoFits

TIMER_ENTRY_ACTIVATION_NUMBER - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_ACTIVATION_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_DESCRIPTION - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_INTERVAL - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_TRIGGER_IN - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TIMER_ENTRY_TRIGGER_OUT - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

times(libdt.Mat[], double) - Method in class gov.nih.mipav.model.algorithms.libdt

times(libdt.Mat, double) - Method in class gov.nih.mipav.model.algorithms.libdt

times(libdt.Mat, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

timeSlice - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

timeSlice - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Current time slice being displayed.

timeSlice - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Time sliders value.

timeSlice - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

timeSlice - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

timeSliceA - Variable in class gov.nih.mipav.view.PatientSlice

For 4D data, the timeSlice multiplier for imageA:.

timeSliceA - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

DOCUMENT ME!

timeSliceB - Variable in class gov.nih.mipav.view.PatientSlice

For 4D data, the timeSlice multiplier for imageB:.

timeSliceB - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

DOCUMENT ME!

timestamp() - Method in class gov.nih.mipav.model.algorithms.NL2sol

timeStamp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

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timeStamp - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

timeStamp - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

timeStamp - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry

The timestamp

timeStamper() - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Creates a string in the form of the time determined when this method is called.

timeStamps - Variable in class gov.nih.mipav.model.file.FileInfoCZI

TimeStatistics(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchFunction

timeStep - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

The time parameter step size, called tau in the algorithm description In 2D for stability the time step should be <= 0.25.

timeStep - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

The time parameter step size, called tau in the algorithm description In 2D for stability the time step should be <= 0.25.

timeStep - Variable in class gov.nih.mipav.model.file.FileAfni

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timeStep - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

timeStepUnit - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

timeStr - Variable in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

timesValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

timeUnits - Variable in class gov.nih.mipav.model.file.FileNIFTI

Bits 3, 4, and 5 of xyzt_units specify the units of pixdim[4], that is the temporal units of the nifti time axis.

timeVals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

timeVals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

timeVals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

A vector of center times for each volume

timeVals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask

timeVals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

A vector of center times for each volume

timeVals - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

timeWindowImages - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowImagesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowLowerLimit - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowLowerLimitIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindows - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowsNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowUpperLimit - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWindowUpperLimitIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

timeWritten - Variable in class gov.nih.mipav.model.file.FileInfoFits

tIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangulationEdge

tInfo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

tInfo - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

tInfo - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

tInverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics

tiny - Variable in class gov.nih.mipav.model.algorithms.Bessel

2**-1022 = D1MACH(1).

tiny - Variable in class gov.nih.mipav.model.algorithms.BesselEP

2**-1022 = D1MACH(1).

tiny - Variable in class gov.nih.mipav.model.algorithms.NL2sol

2**-1022 = D1MACH(1).

TINY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Used to prevent division by zero.

TINY - Variable in class gov.nih.mipav.model.algorithms.CVODES

TINY - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

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TINYd - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

TinyPivots - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t

tipLen - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute

Burning probe tip length.

tipLengthCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Combo box for indicating the length of the probe tip.

tips - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

tissueGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

tissueImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

tissueImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

tissueImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

tissueImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

tissueSource - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

tissueSource - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

tistep - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

title - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig

title - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SigSet

title - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata

title - Variable in class gov.nih.mipav.model.file.FileInfoCZI

title - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator

Title of investigator.

title - Variable in class gov.nih.mipav.model.file.FileInfoZVI

title - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW

Reference to the TitleUpdater instance.

title - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor

Reference to the TitleUpdater instance.

title - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

dialog title and version *

title - Variable in class gov.nih.mipav.view.dialogs.JDialogServer

DOCUMENT ME!

title - Variable in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode

title - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

title - Static variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

title - Static variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

title - Variable in class gov.nih.mipav.view.ProgressChangeEvent

The title of the progress dialog

title - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

dialog title and version *

title - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

title - Variable in class gov.nih.mipav.view.ViewJProgressBar

Title of the frame for the progress bar.

title - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer

Base title string inputted at instantiation

titledBorder - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

titled border for certain components *

titledBorder - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

titled border for certain components *

titleField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer

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titleField - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

titleLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer

DOCUMENT ME!

titleLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

titleLabel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer

Actual displayed label: also includes the message

titles - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

titles - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogClose

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

locks the frame title

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

locks the frame title

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogErode

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Used to lock and unlock images.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Used to lock and unlock images.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

String titles for the new windows.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

or if the source image is to be replaced.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

or if the source image is to be replaced.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMean

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMode

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

Used for setting image to locked and unlocked.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Used to lock and unlock images.

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

locks the frame title

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat

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titles - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

The GUI list of images

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

titles - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

titleStr - Variable in class gov.nih.mipav.model.file.FileInfoTMG

DOCUMENT ME!

titref - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tjflat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tjindex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tjstep - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

tl_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

tliop() - Constructor for class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.tliop

TLRC_AC_TO_LAT - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants.

TLRC_AC_TO_PC - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants.

TLRC_AC_TO_TOP - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants.

TLRC_BOT_TO_AC - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants. most inferior to AC.

TLRC_FRONT_TO_AC - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants.

TLRC_PC_TO_BACK - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

acpc constants.

TLRC_TO_ACPC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

TLRC_TO_ACPC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

TLRC_TO_ORIG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

TLRC_TO_ORIG - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

tlrcAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Anterior Comissure in Talairach space.

tlrcACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

tlrcDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Image dimensions.

tlrcDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

tlrcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

tlrcPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Posterior Comissure in Talairach space.

tlrcPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

tlrcRes - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

tlrcRes - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

tlrcRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Voxel resolutions for the sub-boxes.

tlrcRes - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

tlrcResCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

tlrcResFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

tlrcToAcpc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Transforms point from tlrc to acpc...matrix is implicitly inverted in code.

tlrcToAcpc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Transforms point from tlrc to acpc...matrix is implicitly inverted in code.

tlrcToOrig(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Transforms point from tlrc to orig...matrix is implicitly inverted in code.

tlrcToOrig(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

Transforms point from tlrc to orig...matrix is implicitly inverted in code.

tm - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

TM - gov.nih.mipav.model.file.FileDicomTagInfo.VR

tm_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

tMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Mask that meets threshold and sMask requirements for shrunken volume.

TmatchPts - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

tMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

tMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

tMatrix - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

tMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation

Initial transmatrix for cost functions

tMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

Identity matrix for testing cost

tMatrix - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

Identity matrix for testing cost

tMatrix - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Identity matrix for testing cost

tMatrixMatchtoBase - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

tmax - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

Tmax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tmax_plot - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

tmesh - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

triangle mesh for decimation.

TMG - Static variable in class gov.nih.mipav.model.file.FileUtility

Optical coherence tomography. extension: .tmg

tmin - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

Tmin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tmin_plot - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

tmp_e_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement

tmp_e_cols_2_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement

tmp_f_cols_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement

tmp_rows_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement

tmpArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution

DOCUMENT ME!

tmpImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

tmpIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

tmppoint3d1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

tmppoint3d1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

tmppoint3d2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

tmppoint3d2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

tmpPosition - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark

DOCUMENT ME!

tmpPt - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

tmpPt - Variable in class gov.nih.mipav.view.RubberbandPolyline

DOCUMENT ME!

tmpStr - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold

DOCUMENT ME!

tmpStr - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids

DOCUMENT ME!

tmpXfrm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

tmvbx - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tmvopx - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

TN_vector_expectation(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

TN_vector_variance(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

TNGQP - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

TO_BE_DEFINED - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod

to_explore - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

toAbridgedString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem

Creates string of this object with just first 6DOF and cost.

toAbridgedString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem

Creates string of this object with just first 6DOF and cost.

toAbridgedString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem

Creates string of this object with just first 6DOF and cost.

toAbridgedString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem

Creates string of this object with just first 6DOF and cost.

toAbridgedString() - Method in class gov.nih.mipav.model.algorithms.registration.MatrixListItem

Creates string of this object with just first 6DOF and cost.

toArchiveCnt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

228 - (internal use) number of Unarchived images.

toArchiveData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

236.

toArchiveLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

232 - (internal use) Unarchived images keys in Series.

toArray(Boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

toBufferedImage() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

toBufferedImage(BufferedImage) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img

toBufferedImage(BufferedImage) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.ImgBase

Copies this image's data to the specified BufferedImage.

ToCRSMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

ToCRSMatrix(CeresSolver.CRSMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

todayCalendar - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

ToDebugString() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

ToDegrees(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

ToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

ToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

ToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

ToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

ToDenseMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

toDialogString() - Method in class gov.nih.mipav.model.structures.TransMatrix

Produces a string of the matrix values, rows separated by tabs.

toDialogString() - Method in class gov.nih.mipav.model.structures.TransMatrixd

Produces a string of the matrix values, rows separated by tabs.

toDMSString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation

toDouble(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Doubles with length equal to the tag vm.

toeplitz(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

toeplitz_from_kernel(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

tOffset - Variable in class gov.nih.mipav.model.file.FileNIFTI

The toffset field can be used to indicate a nonzero start point for the time axis.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize

Write an object to disk.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Writes a PCA object to a binary file.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo

Write point info to a file

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Writes the class data to disk.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Write the shape to a binary file.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp

Writes the class info to file.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

Not used

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Writes the matrix to disk in binary format.

ToFile(DataOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Writes the vector to disk in binary format.

ToFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMObject

ToFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Writes the matrix to disk in binary format.

ToFile(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Writes the vector to disk in binary format.

toFloat(byte) - Static method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Convert a 'byte' that represents an unsigned 8-bit integer (uint8) to a 32-bit float.

toFloat(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Floats with length equal to the tag vm.

toFriendlyString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age

toFullMatrix(libdt.CovMatrix) - Method in class gov.nih.mipav.model.algorithms.libdt

toggleArray - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

elements of tBar.

toggleArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

toggleArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

toggleArray - Static variable in class gov.nih.mipav.view.ViewJFrameLightBox

Elements of tBar.

toggleArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

toggleArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

toggleDisplay(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Called by the JPanelGeodesic interface to switch between displaying the Smoothed Geodesic, Dijkstra's path, or the Euclidian path.

toggleDisplaySurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Toggle Surface display on/off.

toggleDisplayVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Toggle 3D VOI display on/off.

toggleDisplayVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Toggle 3D Volume display on/off.

toggleDisplayVolumeSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Toggle 3D Slice display on/off.

toggleGeodesicPathDisplay(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Causes the Geodesic class to switch between displaying the Smoothed Geodesic, Dijkst'ra path along the mesh, or the straight-line Euclidian path between the selected endpoints.

toggleGeodesicPathDisplay(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Toggle which type of Geodesic is displayed on the surface (Euclidian, Dijkstra, Geodesic).

toggleGeodesicPathDisplay(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Switches between different ways of displaying the geodesic path (Euclidean, Geodesic, or Mesh).

toggleGeodesicPathDisplay(String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Switches between different ways of displaying the geodesic path (Euclidean, Geodesic, or Mesh).

ToggleGeodesicPathDisplay(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Switches between different ways of displaying the geodesic path (Euclidean, Geodesic, or Mesh).

toggleLatLonLines() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Toggle between displaying the latitude and longitude lines:

toggleLatLonLines(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Toggle between displaying the latitude and longitude lines:

toggleLivewire() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Toggle between livewire mode and point & click mode.

toggleLivewire() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Toggles between live wire mode and point and click mode for drawing geodesics on the surfaces.

toggleLivewire() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Toggles between live wire mode and point and click mode for drawing geodesics on the surfaces.

toggleLivewire() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Toggle between livewire mode and point & click mode.

toggleNavigation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Toggle Navigation mode.

toggleNavigation(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Toggle navigation fly-thru tracking mode

toggleNode(Node, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Toggle the display on/off for the given Node.

togglePathDisplay(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Causes the Geodesic class to switch between displaying the Smoothed Geodesic, Dijkst'ra path along the mesh, or the straight-line Euclidian path between the selected endpoints.

togglePickCorrespondence() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Enables picking with the mouse and drawing the curve on the mesh.

togglePickCorrespondence() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Enables picking with the mouse and drawing the curve on the mesh.

togglePickPuncture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

Enables picking with the mouse and drawing the curve on the mesh.

togglePickPuncture() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Enables picking with the mouse and drawing the curve on the mesh.

toggleRemoveSelection(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel

toggleSelectedImage() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

toggleSelectedImage - Toggles which image is currently selected.

toggleSlider() - Method in class gov.nih.mipav.view.ViewControlsImage

This method toggles between the intensities between Image A and Image B

toggleWireframe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Toggle between wireframe and filled polygon mode:

toggleWireframe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic

Toggles between wireframe and filled polygon drawing for the surfaces.

toggleWireframe() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Toggle between wireframe and filled polygon mode.

toggleWireframe() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM

Toggles between wireframe and filled polygon drawing for the surfaces.

toHexString(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Converts an integer to a hex string of length 4 with leading zeros.

toHexString2(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Converts an integer to a hex string of length 2 with leading zeros.

toImg() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback

toImg() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas

Fetches the current contents of the framebuffer and returns them as an ContourPlot.Img.

toInt(byte) - Static method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

Convert a 'byte' that represents an unsigned 8-bit integer (uint8) to a signed 32-bit integer (int32).

toInt(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Integers with length equal to the tag vm.

toInt32BigEndian() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteConvertTest

toInt32BigEndian(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteConvert

toInt32LittleEndian() - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.ByteConvertTest

toInt32LittleEndian(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteConvert

Token() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Token

tokenize(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

method that tokenizes the expression

TokenizerException - Exception in gov.nih.mipav.model.structures

Exception to indicate that a problem was encountered parsing a string.

TokenizerException() - Constructor for exception gov.nih.mipav.model.structures.TokenizerException

Create a new exception.

TokenizerException(String) - Constructor for exception gov.nih.mipav.model.structures.TokenizerException

Create a new exception with a specific message.

tokens() - Method in class gov.nih.mipav.model.algorithms.LSCM.Parser

tol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLLE

tol - Variable in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

tol - Variable in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

tol - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient

tol - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace

numerical tolerance of approaching pole (default 1.0e-9).

tol - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd

numerical tolerance of approaching pole (default 1.0e-9).

tol - Variable in class gov.nih.mipav.model.algorithms.NESolve

tol - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient

tol - Variable in class gov.nih.mipav.view.dialogs.JDialogLLE

tol - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

tol - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

tol - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

tol - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter

TOL - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

TOL - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

TOL - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

TOL - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

TOL - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

tol_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

TOL_E - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection

tol_grad_ratio - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

tol_optgap - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

toLabelX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

toLabelY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

toLabelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

tolcostdegrease - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

told - Variable in class gov.nih.mipav.model.algorithms.ODE

told - Variable in class gov.nih.mipav.model.algorithms.ODEEP

tolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Array of tolerances for each dimension.

tolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

tolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

tolerance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Array of tolerances for each dimension.

tolerance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

DOCUMENT ME!

tolerance - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

pseudo rank tolerance constant used to determine the pseudo rank of the Jacobian J.

tolerance - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

pseudo rank tolerance constant used to determine the pseudo rank of the Jacobian J.

tolerance - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

tolerance - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

tolerance - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

tolerance - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity

toleranceText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

toleranceText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

TolerantLoss(double, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss

tolf - Variable in class gov.nih.mipav.model.algorithms.NelderMead

toList(Iterable<E>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Iterables

TOLOU - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

toLPS(ModelImage, int[], boolean[]) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems

Returns the axisOrder and axisFlip mapping of the input image to LPS coordinates.

tolText - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

tolx - Variable in class gov.nih.mipav.model.algorithms.NelderMead

ToMatlab(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh

Writes mesh structure to a matlab file containing three vectors: xTri X-points. yTri Y-points.

ToMatlab(String, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection

Writes the shapes in a (NShapes x 2*NPoints) matrix in Matlab (*.m) format.

ToMatlab(String, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Writes the matrix to disk in MatLab (.m) format.

ToMatlab(String, String, String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Writes the vector to disk in MatLab (.m) format.

ToMatrix(int, int, CDMatrix, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Converts this vector to a matrix, either by row (default) or column.

toolBar - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

tool bar *

toolBar - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

Toolbar.

toolBar - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Toolbar.

toolBar - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove

Tool bar of the mouse recorder.

toolBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Tool bar of the mouse recorder.

toolBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Tool bar of the mouse recorder.

toolBar - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Tool bar.

toolBar - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

ToolBar that hold the linear, horizontal mode etc.

toolBar - Variable in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB

Deprecated.

ToolBar that hold the linear, horizontal mode etc.

toolBar - Variable in class gov.nih.mipav.view.ViewControlsImage

Main toolbar .

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

toolBar - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

toolBar2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

toolBar2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

toolBarBottom - Variable in class gov.nih.mipav.view.JPanelHistogram

bottom tool bar

toolBarBottom - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Bottom toolbar.

toolBarBottom - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

toolbarBuilder - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

ViewToolBarBuilder *

toolbarBuilder - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME !

toolbarBuilder - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

Toolbar builder reference.

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Toolbar builder reference.

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

ViewToolBarBuilder *

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

Toolbar builder reference.

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

The toolbar builder that constructs the VOI toolbar -- it stores the VOI color button.

toolbarBuilder - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Toolbar builder reference.

toolbarBuilder - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Toolbar builder reference.

toolBarCenter - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

center toolbar

toolBarCenter - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

center toolbar

toolbarFlags - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

toolBarObj - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Toolbar that hold the linear, horizontal mode control buttons.

toolBarObj - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Object which generates the toolbar.

toolBarObj - Variable in class gov.nih.mipav.view.ViewControlsImage

Object builds and controls the toolbars.

toolBarObj - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Object which generates the toolbar.

toolBarObj - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

toolbarPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

toolbarPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

DOCUMENT ME!

toolbarPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

The dialog's toolbar panel.

toolbarPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

toolbarPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

variables for the toolbar.

toolbarPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

toolbarPanel - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

Variables for the toolbar.

toolBarSep - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

toolBarThreshold - Variable in class gov.nih.mipav.view.JPanelHistogram

threshold tool bar

toolBarThreshold - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

toolBarTop - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Top toolbar

toolBarTop - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

toolFrame - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

Frame where component image is displayed (only for new RegistrationTool).

tooltip - Variable in class gov.nih.mipav.view.CustomUIBuilder.UIParams

toolTip - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

DOCUMENT ME!

TOOLTIP_DISMISS_DELAY - Static variable in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

TOOLTIP_INITIAL_DELAY - Static variable in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

toOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

The transformation matrix to the origin of the input image.

toOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

The transformation matrix to the origin of the input image.

toOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

The transformation matrix to the origin of the input image.

toOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

The transformation matrix to the origin of the input image.

toOrigin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

The transformation matrix to the origin of the input image.

toOriginal(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

to convert frame coordinates into the original image ones

toOriginal(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

to convert frame coordinates into the original image ones

top - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

top - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect

Top() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

TOP - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes

TOP_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Top bounding edge of the canvas in world coordinates.

TOP_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

TOP_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

TOP_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

top1 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t

top2 - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t

topFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

topInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins

DOCUMENT ME!

topInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

topInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

topinv(double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topinvmul(double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topLeftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

toplevelOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

topmul(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topObject - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer

TOPOLSOLINE_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TOPOPROFILE_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

topPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

topPadBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

topPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas

topPanel - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Toolbar panel.

topPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

and innerPanel placed in scrollPane.

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

and innerPanel placed in scrollPane.

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

and innerPanel placed in scrollPane.

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

and innerPanel placed in scrollPane.

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

topPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

toppedColor - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

topprep(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topprepinv(double[][], double[][], double[][], double[][], double[][], double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topRightBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

topSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

topSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

topsol(double[][], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

topSpace - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

if y is an even number, use the extra space on the top half (otherwise bottom).

topX - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

topY - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

topZ - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

ToRad(float) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

ToRad(float) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.RunBallPivoting

ToRad(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

toSciNotation() - Method in class gov.nih.mipav.util.DoubleDouble

Returns the string representation of this value in scientific notation.

toSet(Iterable<E>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Iterables

toShort(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Integers with length equal to the tag vm.

toSimpleString(boolean) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational

Returns the simplest representation of this MetadataExtractor.Rational's value possible.

toStandardNotation() - Method in class gov.nih.mipav.util.DoubleDouble

Returns the string representation of this value in standard notation.

toString() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel

toString() - Method in class gov.nih.mipav.model.algorithms.BlindDeblur.Pair

toString() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Pair

toString() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ResidualBlock

toString() - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet

toString() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pair

toString() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel

toString() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D

toString() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D

toString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D.MatrixListItem

Creates readable string of this object, including cost, matrix, and point with its meanings.

toString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D.MatrixListItem

Creates readable string of this object, including cost, matrix, and point with its meanings.

toString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D.MatrixListItem

Creates readable string of this object, including cost, matrix, and point with its meanings.

toString() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D.MatrixListItem

Creates readable string of this object, including cost, matrix, and point with its meanings.

toString() - Method in class gov.nih.mipav.model.algorithms.registration.MatrixListItem

Creates readable string of this object, including cost, matrix, and point with its meanings.

toString() - Method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

toString() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Pair

toString() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object

Used for DICOM data objects.

toString() - Method in class gov.nih.mipav.model.file.FileDicomKey

Returns the unique identifier.

toString() - Method in class gov.nih.mipav.model.file.FileDicomSQ

Returns the word 'Sequence'.

toString() - Method in class gov.nih.mipav.model.file.FileDicomTag

Used for debugging so that the information contained in the tag can be converted to a readable form.

toString() - Method in class gov.nih.mipav.model.file.FileDicomTagInfo

Return information about the tag, in string form.

toString() - Method in class gov.nih.mipav.model.file.FileDicomTagTable

Returns a string containing information about this tag table.

toString() - Method in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation

toString() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Modality

toString() - Method in class gov.nih.mipav.model.file.FileInfoBase

Gives the information contained in FileInfo in a string.

toString() - Method in enum gov.nih.mipav.model.file.FileInfoBase.Unit

toString() - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit

toString() - Method in class gov.nih.mipav.model.file.FileMincAttElem

Method that converts this attribute to a readable string.

toString() - Method in class gov.nih.mipav.model.file.FileMincDimElem

Creates a readable version of this element; used in displayAboutInfo.

toString() - Method in class gov.nih.mipav.model.file.FileMincVarElem

Converts information contained in variable to a readable form.

toString() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

toString() - Method in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream

toString() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

toString() - Method in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream

toString() - Method in class gov.nih.mipav.model.file.FileWriteOptions

Shows these options as a string, useful for debugging.

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age

toString() - Method in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Face

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational

Returns a string representation of the object of form numerator/denominator.

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StringValue

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Tag

A basic representation of the tag's type and value.

toString() - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

toString() - Method in class gov.nih.mipav.model.file.PrivateFileDicomKey

Returns the unique identifier.

toString() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW

Returns a string of information about the object, more than 1 line long.

toString() - Method in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice

Returns a string of information about the object, more than 1 line long.

toString() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

Returns a string of information about the object, more than 1 line long.

toString() - Method in class gov.nih.mipav.model.file.XMLParameter

String representation of parameter.

toString() - Method in class gov.nih.mipav.model.file.XMLPSet

Returns a String representation of the Set.

toString() - Method in class gov.nih.mipav.model.provenance.ProvenanceEntry

prints out a few things (not done)

toString() - Method in exception gov.nih.mipav.model.scripting.parameters.ParameterException

Returns a string representing the information contained in this exception.

toString() - Method in exception gov.nih.mipav.model.scripting.ParserException

Converts the information contained in this exception to a String suitable for display to the user.

toString() - Method in class gov.nih.mipav.model.structures.CubeBounds

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.model.structures.MatrixHolder

toString() - Method in class gov.nih.mipav.model.structures.ModelImage

Gives a readable representation of the ModelImage, including file name and extents.

toString() - Method in class gov.nih.mipav.model.structures.ModelLUT

displays the LUT colours and alpha values in hex.

toString() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Returns a readable representation of this simple image.

toString() - Method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType

toString() - Method in class gov.nih.mipav.model.structures.Point3D

Prints out this point object in a user readable form.

toString() - Method in class gov.nih.mipav.model.structures.TransferFunction

toString() - Method in class gov.nih.mipav.model.structures.TransMatrix

ToString method that includes the matrix printout as well as the transform ID of the transmatrix

toString() - Method in class gov.nih.mipav.model.structures.TransMatrixd

ToString method that includes the matrix printout as well as the transform ID of the transmatrixd

toString() - Method in class gov.nih.mipav.model.structures.UpdateVOIEvent

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.model.structures.VOI

toString() - Method in class gov.nih.mipav.util.DoubleDouble

Returns a string representation of this number, in either standard or scientific notation.

toString() - Method in enum gov.nih.mipav.view.Argument.InstanceArgument

toString() - Method in enum gov.nih.mipav.view.Argument.StaticArgument

toString() - Method in interface gov.nih.mipav.view.dialogs.ActionMetadata

toString() - Method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength

toString() - Method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType

toString() - Method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

toString() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.DicomTagIdentifier

Returns the group and element in parenthesis as displayed by the FileDicomKey and the name of the DICOM tag.

toString() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.view.dialogs.MipavActionMetadata

toString() - Method in class gov.nih.mipav.view.dialogs.ScriptImage

toString() - Method in class gov.nih.mipav.view.dialogs.ScriptVOI

toString() - Method in enum gov.nih.mipav.view.Preferences.ComplexDisplay

toString() - Method in enum gov.nih.mipav.view.Preferences.DefaultDisplay

toString() - Method in enum gov.nih.mipav.view.Preferences.InterpolateDisplay

toString() - Method in enum gov.nih.mipav.view.Preferences.LogLevel

toString() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.view.renderer.SceneState

Print out the present screen state.

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Pair

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode

toString() - Method in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node

toString() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode

Returns readable representation of this node.

toString() - Method in class gov.nih.mipav.view.RubberbandLivewire.TreeNode

Returns readable representation of this node.

toString() - Method in class gov.nih.mipav.view.ShortCutted

DOCUMENT ME!

toString() - Method in class gov.nih.mipav.view.ViewFileTreeNode

Gets the name of the File.

toString() - Method in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode

toString() - Method in enum gov.nih.mipav.view.ViewJSlider.SliderType

toString() - Method in class gov.nih.mipav.view.VOIContourNode

the string returned is the name of the VOI returns the name of the VOI if it exists, or null if it doesn't.

toString() - Method in class gov.nih.mipav.view.VOIFrameNode

the string returned is the name of the VOI returns the name of the VOI if it exists, or null if it doesn't.

toString() - Method in class gov.nih.mipav.view.VOIGroupNode

the string returned is the name of the VOI returns the name of the VOI if it exists, or null if it doesn't.

toString() - Method in class gov.nih.mipav.view.VOIGroupTree

nothing really important to say here....

toString() - Method in class gov.nih.mipav.view.VOIOrientationNode

the string returned is the name of the VOI returns the name of the VOI if it exists, or null if it doesn't.

toString(boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelLUT

Presents the Lookuptable by.

toString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType

toString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm

toString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent

toString(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod

toString(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression

toString(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType

toString(String) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options

Convert the options to a delimeted text string.

toString(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Object

Creates a description of the entire DICOM_VR list.

toString(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_ObjectList

Converts object to string

toString(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_VR

Creates a string representation of this VR.

toString(Charset) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StringValue

ToString() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

ToString() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Returns a string representing the matrix.

ToString(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Returns a string representing the vector.

toStringArray() - Static method in enum gov.nih.mipav.view.Preferences.LogLevel

total - Variable in class gov.nih.mipav.view.ViewJFrameMemory

DOCUMENT ME!

total(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

total(libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt

TOTAL - Static variable in class gov.nih.mipav.model.structures.VOIStatisticalProperties

total_extra_passes - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr

total_iMCU_rows - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

total_len - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TURN_REP_REC

total_len - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.turnrep

total_needed - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.mem_usage_t

total_passes - Variable in class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr

total_passes - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_progress_mgr

total_space_allocated - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr

total_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary

total_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchSummary

total_time_in_seconds - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

TOTAL_VOIS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

TOTAL_VOIS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

totalArea - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalAreaB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalAreaG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalAreaR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

number of histogram and histomap values actually used.

totalBlankFrames - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

totalCounts - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

totalCountsIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

totalDataFrames - Variable in class gov.nih.mipav.model.file.FileAvi

These are used for writing the AVI frame by frame from the surface renderer.

totalDeformField - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

totalDeformFieldSplit - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

totalDistanceString - Variable in class gov.nih.mipav.model.structures.VOIPoint

Distance is calculated and passed in by VOI for polyline_slices

totalDistanceString() - Method in class gov.nih.mipav.model.structures.VOIPoint

Returns the totalDistance string.

totalFrames - Variable in class gov.nih.mipav.model.file.FileInfoAvi

DOCUMENT ME!

totalHaralickFilters - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

totalHaralickFilters - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

totalHaralickFilters - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

totalImageNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

totalImageNumber - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

totalImageSlices - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

total image slices

totalLen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

DOCUMENT ME!

totalMemory - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

DOCUMENT ME!

totalNumberOfDiffusionExperiments - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

totalNumVolumes - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

total num of volumes in study

totalPixels - Variable in class gov.nih.mipav.model.structures.ModelHistogram

DOCUMENT ME!

totalPostTriggerDelayTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X

totalPostTriggerDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

totalsearch - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

totalShortStreamSize - Variable in class gov.nih.mipav.model.file.FileZVI

totalSize - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

totalSlices - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

totalSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices

Number of slices that will be present in the 3D image after the missing slices have been inserted.

totalThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

TotalTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

totalvids - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

totalVolume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalVolume - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation

The total volume of the burns in this treatment set (if it has been calculated and the number of burns hasn't changed).

totalVolumeB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalVolumeG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalVolumeLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Burning points total volume label.

totalVolumeR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

total volume in threshold

totalVolumeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Burning point total volume text.

totalWeight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

totalWeight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

ToTextFile(File) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

ToTextFile(File) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

ToTextFile(File) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

ToTextFile(File) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

ToTextFile(File) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

ToTripletSparseMatrix(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

toUInt(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Longs with length equal to the tag vm.

toUnaliasedCoord(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

toUnaliasedIdx(int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

toUnshiftedOffset(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader

toUnshiftedOffset(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

toUnshiftedOffset(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader

toUnshiftedOffset(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

toUpdate() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

toUShort(byte[], int, boolean) - Static method in class gov.nih.mipav.model.file.FileDicomTag

Converts a little-endian byte array into an array of Integers with length equal to the tag vm.

tout - Variable in class gov.nih.mipav.model.algorithms.ODE

tout - Variable in class gov.nih.mipav.model.algorithms.ODEEP

ToVector(CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Converts this matrix to a vector, either by row (default) or column.

toXML() - Method in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults

Returns this result object in XML format.

tp(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

tp_index - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tile_index_t

information concerning tile parts

tp_num - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t

Tile part number

tp_on - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

Enabling Tile part generation

tp_pos - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_t

Position of the tilepart flag in Progression order

tPos - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

tPos - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

TPPQF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

tProbabilityFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics

Tps() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Tps

TPS - gov.nih.mipav.model.algorithms.SIFT3D.tform_type

tpSpline() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Thin-plate registration method.

tpSpline() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Thin-plate registration method.

tpSpline2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

tpSpline2D(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

tpSpline3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

tpSplineButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

tPts - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace

DOCUMENT ME!

tPts - Variable in class gov.nih.mipav.model.algorithms.InverseLaplaceqd

DOCUMENT ME!

tpvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

positive volume fraction.

tpvf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

positive volume fraction.

tpwgts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

tql2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition

TQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex

DOCUMENT ME!

tr - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

Time between shots in seconds (0.0 - 10000.0)

tr - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tr - Variable in class gov.nih.mipav.model.file.FileGESigna4X

tr - Variable in class gov.nih.mipav.model.file.FileInfoCOR

DOCUMENT ME!

tr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

tr - Variable in class gov.nih.mipav.model.file.FileInfoMGH

tr - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

tr - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

tr - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

TR - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tr_i(TURN_REP, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

tr_len(TURN_REP, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

tr_n(TURN_REP) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

tr_s(TURN_REP, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

tr_smt(TURN_REP, int, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

tr_theta(TURN_REP, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

trace(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Ray trace the 3D image in its current orientation as determined by the oriented bounding box.

trace(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Ray trace by step size.

trace(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

Ray trace by step size.

trace(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageShearWarp

Ray trace image volume by the step size and the space size.

trace(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

Trace() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calculates the trace - i.e. the sum of diagonal elements.

trace_level - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr

trace_to_root(LSCM.Vertex, Vector<LSCM.Vertex>) - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph

traceBackLeftLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceBackLeftLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceBackLeftLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceBackLeftLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceBackLeftLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceBackLeftLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceBackRightLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceBackRightLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceBackRightLegGroup4(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceBackRightLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceBackRightLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceBackRightLegGroup7to6(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceBlockRays(int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

traceContour() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

traceImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

TraceImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting

Called at the beginning of the trace methods.

traceInit() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP

Called at the beginning of the trace methods.

traceSection1(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection1(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection1(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection1(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection1(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection1_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection1_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection1_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection2(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection2(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection2(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection2(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection2(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection2_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection2_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection2_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection3(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection3(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection3(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection3(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection3(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection3_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection3_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection3_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection4(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection4(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection4(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection4(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection4(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection4_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection4_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection4_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection4Backward(float, float, float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection4Backward(float, float, float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection4Backward(float, float, float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection5(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection5(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection5_lower(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection5_lower(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection5_lower(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection5_lower_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection5_lower_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection5_lower_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection5_upper(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection5_upper(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection5_upper(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection5_upper_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection5_upper_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection5_upper_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection6(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection6(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection6(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceSection6(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

traceSection6(float, float, float, float, Vector3f, float, int, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

traceSection6_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceSection6_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceSection6_condyle(float, float, float, float, Vector3f, float, int, float, float, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceTract2(VOIContour, Vector3f, Vector3f, ModelImage, ModelImage, ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

traceTract2(Vector<Integer>, Vector3f, Vector3f, ModelImage, ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract

Traces a single fiber bundle tract starting at the input position and following the input direction.

traceTwoIslands(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceTwoIslands(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceTwoIslands(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceTwoIslandsOnLeft(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceTwoIslandsOnLeft(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceTwoIslandsOnLeft(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

traceTwoIslandsOnRight(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

traceTwoIslandsOnRight(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

traceTwoIslandsOnRight(FileInfoImageXML[], FileInfoImageXML[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFS(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

tracingDFS(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

tracingDFS(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

tracingDFS(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFS(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFS_condyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

tracingDFS_condyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFS_condyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFS_mid(ModelImage, ModelImage, VOI, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFS_mid(ModelImage, ModelImage, VOI, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

tracingDFS_mid(ModelImage, ModelImage, VOI, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFS_mid(ModelImage, ModelImage, VOI, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

tracingDFS_mid(ModelImage, ModelImage, VOI, VOI, VOI, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

tracingDFS_mid_cutoffLine(ModelImage, ModelImage, VOI, VOI, VOI, boolean, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFS_mid_cutoffLine(ModelImage, ModelImage, VOI, VOI, VOI, boolean, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

tracingDFS_mid_cutoffLine(ModelImage, ModelImage, VOI, VOI, VOI, boolean, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFS_shaftCondyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

tracingDFS_shaftCondyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFS_shaftCondyle(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, VOI, VOILine, VOILine) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFSBackward(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

tracingDFSBackward(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

tracingDFSBackward(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, VOI, VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

TracingPoint(double, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.TracingPoint

TracingPoint(double, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.TracingPoint

TracingPoint(double, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.TracingPoint

TracingPoint(double, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.TracingPoint

TracingPoint(double, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.TracingPoint

tracingSliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

tracingSliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

tracingSliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

number of slices to trace, start from the apex and base VOIs

tracingSliceNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

number of slices to trace, start from the apex and base VOIs

TRACK_BLEACH_PIXEL_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM

TRACK_ENTRY_ACQUIRE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_BLEACH_COUNT - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_BLEACH_POSITION_Z - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_BLEACH_SCAN_NUMBER - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_COLLIMATOR1_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_COLLIMATOR1_POSITION - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_COLLIMATOR2_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_COLLIMATOR2_POSITION - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_CONDENSOR_APERTURE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_CONDENSOR_FILTER - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_CONDENSOR_FRONTLENS - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ENABLE_SPOT_BLEACH_POS - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_FIELD_STOP_VALUE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_CONDENSOR_APERTURE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_CONDENSOR_FRONTLENS - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_CONDENSOR_REVOLVER - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_FIELD_STOP - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_TRANSMISSION_FILTER1 - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_TRANSMISSION_FILTER2 - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_TRANSMISSION1 - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_TRANSMISSION2 - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_ID_TUBELENS - Static variable in class gov.nih.mipav.model.file.FileLSM

TRACK_ENTRY_ID_TUBELENS_POSITION - Static variable in class gov.nih.mipav.model.file.FileLSM

TRACK_ENTRY_IS_BLEACH_AFTER_SCAN_NUMBER - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_IS_BLEACH_TRACK - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_IS_RATIO_TRACK - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_MULTIPLEX_ORDER - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_MULTIPLEX_TYPE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_PIXEL_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_REPEAT_BLEACH - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SAMPLE_OBSERVATION_TIME - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SAMPLING_METHOD - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SAMPLING_MODE - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SAMPLING_NUMBER - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TRACK_ENTRY_SPI_CENTER_WAVELENGTH - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SPOT_BLEACH_POSX - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_SPOT_BLEACH_POSY - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_TIME_BETWEEN_STACKS - Static variable in class gov.nih.mipav.model.file.FileLSM

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TRACK_ENTRY_TRIGGER_IN - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TRACK_ENTRY_TRIGGER_OUT - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TRACK_REFLECTED_LIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM

TRACK_SIMULTAN_GRAB_AND_BLEACH - Static variable in class gov.nih.mipav.model.file.FileLSM

TRACK_TRANSMITTED_LIGHT - Static variable in class gov.nih.mipav.model.file.FileLSM

Tracker(Vector<Double>, double[], double[], double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

TrackFileName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

trackingBackward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

trackingForward - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

trackingPointLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

TRACKVIS - Static variable in class gov.nih.mipav.model.file.FileUtility

Extension: .trk, TrackVis track data

TRADITIONAL_DOGLEG - gov.nih.mipav.model.algorithms.CeresSolver.DoglegType

traditionalInput - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

trailer - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.PropertyListResults

Trailer() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BplistReader.Trailer

train() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

train() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

train() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

train() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

train(Problem, Parameter) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

Train - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm

Copyright (c) 2007-2014 The LIBLINEAR Project.

Train() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train

train_exit_with_help() - Method in class gov.nih.mipav.model.algorithms.LIBSVM

train_one(Problem, Parameter, double[], double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

trainByAllDataButton - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainData - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

trainFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

trainFileDirAbs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

trainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

trainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

trainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

trainFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain

trainFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification

trainFilePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain

trainGroupPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

trainGroupTextfield - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

trainIdx - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.DMatch

training - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64

training - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees

trainingDataLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainingPatches(ModelImage, int, int, int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

trainingPatches(ModelImage, int, int, int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

trainingPatches(ModelImage, int, int, int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

trainingPatches(ModelImage, int, int, int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

trainingPatches(ModelImage, int, int, int, float, float, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

trainingRateLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainingValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainTable - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainTableModel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainTableScrollPane - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

trainvidnum - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge

trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.Face

trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

Trait() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Trait

trans - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

trans - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

trans - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

trans - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

trans - Variable in class gov.nih.mipav.model.file.FileTrackVis

Transformation matrix for image

Trans - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.superlu_options_t

TRANS - gov.nih.mipav.model.structures.jama.SuperLU.trans_t

trans_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.trans_t

transCEDImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

transCEDImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

transCEDImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

transCEDImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

transCEDImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

TRANSCENDENTAL_COST_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

TRANSCENDENTAL_FUNCTOR - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

TranscendentalCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalCostFunction

TranscendentalFunctor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TranscendentalFunctor

TRANSCODE_8_BIT_RLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_CVID - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_DIVX - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_DX50 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_GEOV - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_IV32 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_IV41 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_IV50 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_MJPG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_MP42 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_MPG4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_QT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TRANSCODE_RGB - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

TransferA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

TransferB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

transferBits(short, int[]) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.LinesRenderer

transferButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Toggle buttons for transfer, threshold and threshold inverse.

transferFiles() - Method in interface gov.nih.mipav.plugins.PlugInFileTransfer

Transfers the files from one file system to the other file system.

transferFunction - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

DOCUMENT ME!

TransferFunction - Class in gov.nih.mipav.model.structures

Title: TransferFunction

TransferFunction() - Constructor for class gov.nih.mipav.model.structures.TransferFunction

Simple class to hold an array of points that describe a transfer function.

TransferFunction(TransferFunction) - Constructor for class gov.nih.mipav.model.structures.TransferFunction

Copies the object that extends this class.

transferIn(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Starts method of file/image transferring

transferIn(FileInfoBase[], Number[], int, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume

Transfers the given buffer into the given location.

transferLine - Variable in class gov.nih.mipav.model.structures.ModelLUT

Function that maps image values into the LUT.

transferSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store

The transfer syntax used when storing images.

transferSyntaxInSequence - Variable in class gov.nih.mipav.model.file.FileDicom

transferSyntaxLocation - Variable in class gov.nih.mipav.model.file.FileDicom

transferSyntaxValue - Variable in class gov.nih.mipav.model.file.FileDicom

TransferValue(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

transform - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

handle to AlgorithmTransform

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Transformation algorithm for creating an isotropic reference image.

transform - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

transform - Variable in class gov.nih.mipav.model.algorithms.SlantTransform

transform - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

transform - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

transform - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

transform - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC

transform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

Current sceneRoot transform.

transform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes

probe transform.

transform - Variable in class gov.nih.mipav.view.renderer.SceneState

Current sceneRoot transform.

transform() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Creates buffer for new image, prepares transformation matrix, and calls transform function for interpolation specified.

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

Convert the MRI image and corresponding image mask to isotropic image.

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

transform() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

transform() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Transforms the image.

transform() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Transforms the image.

transform(double[], boolean) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

transform(double[], double[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes a 3D or 2D point (as a double array) and premultiplies it by the 3D transformation matrix.

transform(double[], double[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes a 3D or 2D point (as a double array) and premultiplies it by the 3D transformation matrix.

transform(double, double, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes double components of a 2D point and premultiplies it by the 2d transformation matrix.

transform(double, double, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes double components of a 2D point and premultiplies it by the 2d transformation matrix.

transform(double, double, double, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes the double components of a 3D point and premultiplies it by the 3D transformation matrix.

transform(double, double, double, double[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes the double components of a 3D point and premultiplies it by the 3D transformation matrix.

transform(float[], float[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes a 3D point, as a float array, and premultiplies it by the 3D transformation matrix.

transform(float[], float[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes a 3D point, as a float array, and premultiplies it by the 3D transformation matrix.

transform(float, float, float[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes float components of a 2D point and premultiplies it by the 2d transformation matrix.

transform(float, float, float[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes float components of a 2D point and premultiplies it by the 2d transformation matrix.

transform(float, float, float, float[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes the float components of a 3D point and premultiplies it by the 3D transformation matrix.

transform(float, float, float, float[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes the float components of a 3D point and premultiplies it by the 3D transformation matrix.

transform(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation

Sets the transformation matrix and sends the image data to the appropriate interpolation routine.

transform(TransMatrix) - Method in class gov.nih.mipav.model.structures.VOIBase

Copies the input VOIBase, transformed by the input TransMatrix.

transform(Polygon) - Method in class gov.nih.mipav.model.structures.TransMatrix

Tranforms a Polygon (2D).

transform(Polygon) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Tranforms a Polygon (2D).

transform(Vector4f) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Transform a point rotation inverse to the volume rotation.

TRANSFORM_ANOTHER_DATASET - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Another Dataset transform ID.

TRANSFORM_ANOTHER_DATASET - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Another Dataset transform ID.

TRANSFORM_ANOTHER_DATASET - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Another Dataset transform ID.

TRANSFORM_COLUMNS - Static variable in class gov.nih.mipav.model.algorithms.SlantTransform

TRANSFORM_COLUMNS - Static variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

Use serialVersionUID for interoperability.

TRANSFORM_COMPOSITE - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Composite, dynamically generated matrix type

TRANSFORM_COMPOSITE - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Composite, dynamically generated matrix type

TRANSFORM_ID - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo

The label to use for the parameter indicating the transform ID

TRANSFORM_ID_STR - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Array of transform ID strings.

TRANSFORM_ID_STR - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Array of transform ID strings.

TRANSFORM_MATRIX - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo

The label to use for the parameter indicating the transform matrix

TRANSFORM_MNI_152 - Static variable in class gov.nih.mipav.model.file.FileInfoBase

MNI 152 transform ID.

TRANSFORM_MNI_152 - Static variable in class gov.nih.mipav.model.structures.TransMatrix

MNI 152 transform ID.

TRANSFORM_MNI_152 - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

MNI 152 transform ID.

TRANSFORM_NIFTI_SCANNER_ANATOMICAL - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Scanner anatomical matrix associated with NIFTI type

TRANSFORM_NIFTI_SCANNER_ANATOMICAL - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Scanner anatomical matrix associated with NIFTI type

TRANSFORM_ROWS - Static variable in class gov.nih.mipav.model.algorithms.SlantTransform

TRANSFORM_ROWS - Static variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

TRANSFORM_SCANNER_ANATOMICAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Scanner Anatomical transform ID.

TRANSFORM_SCANNER_ANATOMICAL - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Scanner Anatomical transform ID.

TRANSFORM_SCANNER_ANATOMICAL - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Scanner Anatomical transform ID.

TRANSFORM_STATUS_DEFAULT_TEXT - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

TRANSFORM_TALAIRACH_TOURNOUX - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Talairach Tournoux transform ID.

TRANSFORM_TALAIRACH_TOURNOUX - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Talairach Tournoux transform ID.

TRANSFORM_TALAIRACH_TOURNOUX - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Talairach Tournoux transform ID.

TRANSFORM_UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Unknown transform ID.

TRANSFORM_UNKNOWN - Static variable in class gov.nih.mipav.model.structures.TransMatrix

Composite transform ID.

TRANSFORM_UNKNOWN - Static variable in class gov.nih.mipav.model.structures.TransMatrixd

Composite transform ID.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Transformation algorithm for creating an isotropic input image.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Transformation algorithm for creating an isotropic input image.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Transformation algorithm for creating an isotropic input image.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Transformation algorithm for creating an isotropic input image.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Transformation algorithm for creating an isotropic input image.

transform2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Transformation algorithm for creating an isotropic input image.

transform25DMatchSlice(int, TransMatrix, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

Transforms 2.5 D match slice.

transform25DVOI(ModelImage, double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples a 3D VOI using nearest neighbor interpolation.

transform25DVOI(ModelImage, float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Transforms and resamples a 2D or 25D VOI using nearest neighbor interpolation.

transform25DVOI(ModelImage, ModelImage, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

transform2DVOI(ModelImage, double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples a 2D VOI using nearest neighbor interpolation.

transform2DVOI(ModelImage, ModelImage, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D

Transforms and resamples a 2D VOI using nearest neighbor interpolation.

transform2DVOI(ModelImage, ModelImage, float[], float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D

transform2DVOI(ModelImage, ModelImage, float[], TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

transform3DVOI(ModelImage, double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples a 3D VOI using nearest neighbor interpolation.

transform3DVOI(ModelImage, float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Transforms and resamples a 3D VOI using nearest neighbor interpolation.

transform3DVOI(ModelImage, ModelImage, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

transform3DVOI(ModelImage, ModelImage, float[], float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D

transform3DVOI(ModelImage, ModelImage, float[], TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

transform3DVOIByte(ModelImage, byte[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples a 3D VOI using nearest neighbor interpolation.

transformACPC(ModelImage, float[], TransMatrix, float, float, float, int, int, int, int, int, int[], boolean, float, float, float, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase

This routine is designed to transform AFNI functional images which have already been transformed to match AFNI original images to match AFNI +acpc images.

transformACPCTrilinear(float[], TransMatrix, float, float, float, int, int, int, float, float, float, int, int, int) - Method in class gov.nih.mipav.model.file.FileAfni

transformACPCTrilinear - transforms and resamples volume using trilinear interpolation.

transformACPCTrilinear(ModelImage, float[], double[][], float, float, float, int, int, int, float, float, float, int, int, int, ViewJProgressBar) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC

Transforms and resamples volume using trilinear interpolation

transformAFNI(ModelImage, float[], float, float, float, int, int, int, int, float, float, float, float, float, float, int, int[], boolean, float, float, float, int, int, int, float, float, float, float, float, float) - Method in class gov.nih.mipav.view.ViewJFrameBase

This routine is designed to transform AFNI functional images and AFNI 3D + time anatomical images to match AFNI original 3D anatomical images.

transformAlgorithmBspline2D(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using Bspline interpolation.

transformAlgorithmBspline2DC(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using Bspline interpolation.

transformAlgorithmBspline3D(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using Bspline interpolation.

transformAlgorithmBspline3DC(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using Bspline interpolation.

transformAlgorithmBspline4D(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using Bspline interpolation.

transformAlgorithmBspline4DC(double[], TransMatrix, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples color volume using Bspline interpolation.

transformAsPoint2Dd(Vector2d[], Vector2d[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes an array of Point2Dd 2D vectors and multiplies them with the 2d transformation matrix.

transformAsPoint2Df(Vector2f[], Vector2f[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes an array of Point2Df 2D vectors and multiplies them with the 2d transformation matrix.

transformAsPoint3Dd(Vector3d, Vector3d) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes a Point3Dd 3D point and multiplies it by the 3D transformation matrix.

transformAsPoint3Df(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes a Point3Df 3D point and multiplies it by the 3D transformation matrix.

transformAsVector3Dd(VOIBase, Vector3d[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes an array of Vector3Dd 2D vectors and multiplies them with the 2d transformation matrix.

transformAsVector3Dd(Vector3d[], Vector3d[]) - Method in class gov.nih.mipav.model.structures.TransMatrixd

Takes an array of Vector3Dd 2D vectors and multiplies them with the 2d transformation matrix.

transformAsVector3Df(VOIBase, Vector3f[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes an array of Vector3Df 2D vectors and multiplies them with the 2d transformation matrix.

transformAsVector3Df(Vector3f[], Vector3f[]) - Method in class gov.nih.mipav.model.structures.TransMatrix

Takes an array of Vector3Df 2D vectors and multiplies them with the 2d transformation matrix.

transformAWT2CoordSys(Point2D, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Transforms a location in AWT coordinates (y axis extends to bottom) on this renderer to the corresponding coordinates in the coordinate system view (in GL coords).

transformB0Checkbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

transformB0label - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

transformB0MatCheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

transformBilinear(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation.

transformBilinear(float[], float[], TransMatrix, int, int, float, float, int, int, float, float, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(float[], float[], TransMatrix, int, int, float, float, int, int, float, float, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(float[], ModelImage, TransMatrix, int, int, float, float, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(float[], ModelImage, TransMatrix, int, int, float, float, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Transforms and resamples volume using bilinear interpolation.

transformBilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar, boolean, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using bilinear interpolation.

transformBilinear3D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation.

transformBilinear3DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation (2.5D) This version used with color images.

transformBilinear4D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation (2.5D) Used as a slice only algorithm on 3D images.

transformBilinear4DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation This version used with color images This alogorithm used on a slice by slice basis on 4D images.

transformBilinearC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using bilinear interpolation.

transformBilinearC(ModelImage, ModelImage, TransMatrix, int, int, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Used on color images.

transformBilinearC(ModelImage, ModelImage, TransMatrix, int, int, float, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Used on color images.

transformBoxSlices(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

transform the points used to render the triSliceImages textures.

transformBoxSlices(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

transform the points used to render the triSliceImages textures.

transformBU - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Current updated transform.

transformC() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Transforms color image.

transformC() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Transforms color image.

transformCenter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

transformChange - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Flag indicates that a transform changed event is invoked.

transformChange - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

DOCUMENT ME!

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Needed for this to implement MouseBehaviorCallback.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Tells the mouse dialog that the transform has changed.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

transformChanged.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

MouseBehaviorCallback override.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

Accessor that lets the dialog know that the canvas transform has changed.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Accessor that lets the dialog know that the canvas transform has changed.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Does nothing but must instantiate for this to be a subclass of ViewJFrameSurface.

transformChanged(int, Transform3D) - Method in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback

Classes implementing this interface that are registered with one of the MouseBehaviors will be called every time the behavior updates the Transform.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

When the probe is picked and rotated by mouse, detecting the probing tissue along the probing path.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Tells the mouse dialog that the transform has changed.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Tells the mouse dialog that the transform has changed.

transformChanged(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Tells the mouse dialog that the transform has changed.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom

Users can overload this method which is called every time the Behavior updates the transform.

transformChanged(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior

Users can overload this method which is called every time the Behavior updates the transform.

transformCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

transformCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

transformCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

transformCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

transformContour(TransMatrix, boolean) - Method in class gov.nih.mipav.model.structures.VOIContour

Transforms self.

transformCounter - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Transform counter, used to reduce the rendering frequency.

transformCubic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Cubic tansform3D.

transformCubic - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Cubic tansform3D.

transformCubicLagrangian2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation.

transformCubicLagrangian2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation.

transformCubicLagrangian3D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation.

transformCubicLagrangian3DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation.

transformCubicLagrangian3Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation Does a slice by slice cubic Lagrangian interpolation on a 3 dimensional object.

transformCubicLagrangian3Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 3 dimensional object.

transformCubicLagrangian4D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D cubic Lagrangian interpolation.

transformCubicLagrangian4DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D cubic Lagrangian interpolation.

transformCubicLagrangian4Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation Does a slice by slice cubic Lagrangian interpolation on a 4 dimensional object.

transformCubicLagrangian4Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using cubic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 4 dimensional object.

transformDimPowerOf2(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

Calculate the dimension value to power of 2.

transformDir - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

FORWARD or INVERSE for FFT.

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

Transform direction.

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

Transform direction.

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

transformDir - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

Transform direction.

transformDir - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

transformDWICheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

DOCUMENT ME!

transformedOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

TransformedSpaceStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML

array of strings representing the tags under in the Gifti xml schema.

transformFileName - Variable in class gov.nih.mipav.model.file.FileInfoMGH

transformFunc - Variable in class gov.nih.mipav.view.renderer.SceneState

Currrent tranform function of the volume render look up table.

transformGL2CoordSys(Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Transforms a location in GL coordinates on this renderer to the corresponding coordinates in the coordinate system view.

transformGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

transformHepticLagrangian2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation.

transformHepticLagrangian2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation This version used with color images.

transformHepticLagrangian3D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation.

transformHepticLagrangian3DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation This version used with color images.

transformHepticLagrangian3Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation Does a slice by slice heptic Lagrangian interpolation on a 3 dimensional object.

transformHepticLagrangian3Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 3 dimensional object.

transformHepticLagrangian4D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

transforms and resamples 4 dimensional object using 3D heptic Lagrangian interpolation.

transformHepticLagrangian4DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

transforms and resamples 4 dimensional object using 3D heptic Lagrangian interpolation.

transformHepticLagrangian4Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation Does a slice by slice heptic Lagrangian interpolation on a 4 dimensional object.

transformHepticLagrangian4Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using heptic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 4 dimensional object.

transformIDBox - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

transformImage - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

transformImage - Variable in class gov.nih.mipav.model.algorithms.HaarTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2

transformImage - Variable in class gov.nih.mipav.model.algorithms.SlantTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform

transformImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform2

transformImage - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHaarTransform

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSlantTransform

transformImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

transformImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

transformLength - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

transformMatDWICheckbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing

transformNearestNeighbor2D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor2D(float[], float[], TransMatrix, int, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using Nearest neighbor interpolation.

transformNearestNeighbor2D(float[], float[], TransMatrix, int, int, float, float, int, int, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms using Nearest neighbor interpolation.

transformNearestNeighbor2D(float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor2DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3D(float[], ModelImage, int, int, int, TransMatrix) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3D(float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3Dim2D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor3Dim2DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor4D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D algorithm using nearest neighbor interpolation.

transformNearestNeighbor4DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D algorithm using nearest neighbor interpolation.

transformNearestNeighbor4Dim2D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNearestNeighbor4Dim2DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using nearest neighbor interpolation.

transformNode3d - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Setup the initial position of the image, added to ScenerootTG transform group.

transformNode3d - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Setup the initial position of the image, added to ScenerootTG transform group.

transformPtVolumeToImage(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Transform a java3d point [-1,1] to the image volume space.

transformQuinticLagrangian2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation.

transformQuinticLagrangian2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation This version used with color images.

transformQuinticLagrangian3D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation.

transformQuinticLagrangian3DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation This version used with color images.

transformQuinticLagrangian3Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation Does a slice by slice quintic Lagrangian interpolation on a 3 dimensional object.

transformQuinticLagrangian3Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 3 dimensional object.

transformQuinticLagrangian4D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D quintic Lagrangian interpolation.

transformQuinticLagrangian4DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional color object using 3D quintic Lagrangian interpolation.

transformQuinticLagrangian4Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation Does a slice by slice quintic Lagrangian interpolation on a 4 dimensional object.

transformQuinticLagrangian4Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using quintic Lagrangian interpolation This version used with color images This version performs a slice by slice algorithm on a 4 dimensional object.

transformSlice(int, TransMatrix, float[], float[], Vector3f) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

Transforms a slice.

transformStatusTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

transformTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

transformTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

transformTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

transformTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

transformTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

transformTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

transformTalairach(ModelImage, float[], TransMatrix, float, float, float, int, int, int, int, int, int[], boolean, float, float, float, int, int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase

This routine is designed to transform AFNI functional images which have already been transformed to match AFNI original images to match AFNI +tlrc images.

transformTalairachTrilinear(float[], double[][], float, int, int, int, float, float, float, int, int, int, int, int, int, int, int, int, ViewJProgressBar, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC

Transforms and resamples volume using trilinear interpolation

transformTalairachTrilinear(float[], TransMatrix, float, float, float, int, int, int, float, float, float, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileAfni

transformTalairachTrilinear - transforms and resamples volume using trilinear interpolation.

transformTalairachTrilinear(float[], TransMatrix, float, int, int, int, float, float, float, int, int, int, int, int, int, int, int, int, ViewJProgressBar, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach

Transforms and resamples volume using trilinear interpolation.

transformTalairachVolume(double[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

computes the selected Talairach transform.

transformToACPC() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

transformToTLRC() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

transformTrilinear(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples a 3D volume using trilinear interpolation.

transformTrilinear(float[], float[], TransMatrix, int, int, int, float, float, float, int, int, int, float, float, float, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(float[], float[], TransMatrix, int, int, int, float, float, float, int, int, int, float, float, float, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(float[], ModelImage, TransMatrix, int, int, int, float, float, float, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(float[], ModelImage, TransMatrix, int, int, int, float, float, float, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar, boolean) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear(ModelImage, ModelImage, TransMatrix, ViewJProgressBar, boolean, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation.

transformTrilinear4D(double[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using trilinear interpolation.

transformTrilinear4D(ModelImage, ModelImage, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Performs trilinear interpolation on black and white image data in a 4D image.

transformTrilinear4DByteC(byte[], byte[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional color ARGB object using trilinear interpolation.

transformTrilinear4DC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional color object using trilinear interpolation.

transformTrilinearByteC(byte[], byte[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation This version is used with ARGB color images.

transformTrilinearC(double[], float[], TransMatrix) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation This version is used with color images.

transformTrilinearC(ModelImage, ModelImage, float[], TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Performs trilinear interpolation on color image data.

transformTrilinearC(ModelImage, ModelImage, TransMatrix, int, int, int, float, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation Use on color images USE THIS IF OUTPUT IMAGE HAS DIFFERENT DIM/RES THAN INPUT IMAGE.

transformTrilinearC(ModelImage, ModelImage, TransMatrix, int, int, int, float, float, float, float) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using trilinear interpolation Use on color images USE THIS IF OUTPUT IMAGE HAS DIFFERENT DIM/RES THAN INPUT IMAGE.

transformTrilinearC4D(ModelImage, ModelImage, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Performs trilinear interpolation on color image data in a 4D image.

transformType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

transformType - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

transformType - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

transformTypeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

transformTypeName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

transformUpdate(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

The raybased renderer invokes this method when a mouse release event occurs.

transformUpdate(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

The raybased renderer invokes this method when a mouse release event occurs.

transformUpdate(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Tells the mouse dialog that the transform has changed.

transformVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

transformVOI - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

DOCUMENT ME!

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

BSpline smooth the final auto segmentation VOI contours.

transformVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

BSpline smooth the final auto segmentation VOI contours.

transformVOI(ModelImage, ModelImage, int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Transform the the resulting VOI from cropped image to oringal MR image.

transformVOI(ModelImage, ModelImage, ModelImage, ModelImage, int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Transform the the resulting VOI from cropped image to oringal MR image.

transformVOIAAM() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

BSpline to smooth the final segmented VOIs.

transformVOIs - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

if true transform VOIs.

transformVOIs - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

if true transform VOIs.

transformVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

transformVOIsBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

transformWSinc2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation.

transformWSinc2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation This version used with color images.

transformWSinc3D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation.

transformWSinc3DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation This version used with color images.

transformWSinc3Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation Does a slice by slice windowed sinc interpolation on a 3 dimensional object.

transformWSinc3Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation This version used with color images This version performs a slice by slice algorithm on a 3 dimensional object.

transformWSinc4D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D windowed sinc interpolation.

transformWSinc4DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples 4 dimensional object using 3D windowed sinc interpolation.

transformWSinc4Dim2D(double[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation Does a slice by slice windowed sinc interpolation on a 4 dimensional object.

transformWSinc4Dim2DC(double[], float[], TransMatrix, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Transforms and resamples volume using windowed sinc interpolation This version used with color images This version performs a slice by slice algorithm on a 4 dimensional object.

transformX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

transformY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

transitiveClosure() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

transKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

transKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

transKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

transKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

transKeyImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

translate - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Burning point center.

translate(float, float) - Method in class gov.nih.mipav.model.structures.VOILine

Translate both points of the VOI.

translate(float, float) - Method in class gov.nih.mipav.model.structures.VOIProtractor

Translates 3 points of the protractor VOI.

translate(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIContour

Translates a VOI by some amount in x and y.

translate(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix

Translate the matrix to the specified x, y, z postion.

translate(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

translate(Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase.Matrix

Translate the matrix to the given vector postion.

Translate(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Translates the shape.

Translate(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Translates the shape.

Translate(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode

Translate(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Add to the object translation vector.

TRANSLATE - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback

DOCUMENT ME!

TRANSLATE - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Indicates the VOI cursor is in translate mode

translateButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

translateButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

TranslatedPoint2D(Point2D, double, double) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D

Creates a new ContourPlot.TranslatedPoint2D from the specified point with specified translation.

translateEvent(MouseEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

Translates the mouse event received from the mouse control buttons to its equivalent on the canvas.

translateImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

DOCUMENT ME!

translatePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

translateRangePanelX - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

private JPanel finePanelX, finePanelY, finePanelZ;.

translateRangePanelY - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

private JPanel finePanelX, finePanelY, finePanelZ;.

translateRangePanelZ - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

private JPanel finePanelX, finePanelY, finePanelZ;.

translateSurface(String, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Changes the translation vector for the surface with the given name.

translateSurface(String, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Changes the translation vector for the surface with the given name.

translation - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

translation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

DOCUMENT ME!

translation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

DOCUMENT ME!

translation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom

DOCUMENT ME!

translation - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior

DOCUMENT ME!

translation_2d_mat(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D

translationBF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

translationCutoff - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

used as cutoffs for making space navigator mouse less sensitive to the low range values that may not be intentional user input

translationCutoffTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

translationScaleFactor - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

translationText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Brute-force registration parameters:.

transLimits - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

transMatrix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

transMatrix - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

DOCUMENT ME!

transMatrix - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo

TransMatrix - Class in gov.nih.mipav.model.structures

Transformation matrix class is an affine homogeneous class that can be used to rotate objects like images and VOIs.

TransMatrix(int) - Constructor for class gov.nih.mipav.model.structures.TransMatrix

Construct a transformation matrix.

TransMatrix(int, int) - Constructor for class gov.nih.mipav.model.structures.TransMatrix

TransMatrix(int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.structures.TransMatrix

TransMatrix(TransMatrix) - Constructor for class gov.nih.mipav.model.structures.TransMatrix

copy constructor.

TransMatrix.DataFileV2Keys - Enum in gov.nih.mipav.model.structures

TransMatrixd - Class in gov.nih.mipav.model.structures

Transformation matrix class is an affine homogeneous class that can be used to rotate objects like images and VOIs.

TransMatrixd(int) - Constructor for class gov.nih.mipav.model.structures.TransMatrixd

Construct a transformation matrix.

TransMatrixd(int, int) - Constructor for class gov.nih.mipav.model.structures.TransMatrixd

TransMatrixd(int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.structures.TransMatrixd

TransMatrixd(TransMatrixd) - Constructor for class gov.nih.mipav.model.structures.TransMatrixd

copy constructor.

TransMatsInumber - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

TransMatsInumber - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

transmitAttenuatorSetting - Variable in class gov.nih.mipav.model.file.FileGESigna4X

transmitAttenuatorSetting - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

transmitCoilName - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

transmittedLightHalogenLampMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI

transmittedLightHalogenLampVoltage - Variable in class gov.nih.mipav.model.file.FileInfoZVI

transmittedLightShutter - Variable in class gov.nih.mipav.model.file.FileInfoZVI

transp2(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

transPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

TransparencyOn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

TRANSPARENT - Static variable in class gov.nih.mipav.view.ColorIcon

transpose(libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

transpose(Problem) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear

Transpose() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

Transpose() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

Transpose() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

transpose_Mat_rm(SIFT3D.Mat_rm, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

Transpose3x3(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

transposed - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet

transposed - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog

Transposed() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

TransposeForCompressedRowSparseStructure(int, int, int, int[], int[], double[], int[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

transPower - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

transRotation - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

transform rotation of the volume image during camera snapshot.

transRotationMatrix - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Rotation matrix.

transScalar - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

TRANSVERSE_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

TRANSVERSE_FLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

TRANSVERSE_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

DOCUMENT ME!

TRANSVERSE_UNFLIPPED - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

transVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

transVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

transVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

transVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

transVOIImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

trapezoidConstant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

trapezoidConstant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

trapezoidConstant - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

trapezoidMidpoint - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

trapezoidSlope - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

trapezoidSlope - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.sm2Task

trapezoidSlope - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

trapz(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

trapz(double[][][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

trauma - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

132 Trauma Flag.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

Recursivly traverse the AAM atlas directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

Recursivly traverse the AAM atlas directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Recursively read AAM dir, and update the AAM model structure.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Traverse the 2D slices directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Recursively traverse the image directory.

traverse(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

traverse(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

traverse_100(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

traverse_100(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

traverse_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

traverse_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

traverse_80(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Recursively traverse the image directory.

traverse_date(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_date(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_date(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_dicom(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_dicom(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_dicom(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

traverse_DicomLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

traverse_file(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

traverse_file(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_firstLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_firstLayer_DS(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_firstLayer_ForNathan(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_firstLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_firstLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_firstLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

traverse_firstLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

traverse_firstLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

traverse_fold(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

traverse_fold(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

Traverse the folder

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

Traverse the folder

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI

traverse_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12

traverse_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

traverse_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

traverse_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

traverse_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

traverse_folder_1(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

traverse_folder_2(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

traverse_folder_2(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

traverse_folder_2(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

traverse_folder_2(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

traverse_folder_3(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

traverse_folder_4(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_folder_5(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_folder_5(File, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_5(File, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_5(File, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_folder_5(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

traverse_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

traverse_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

traverse_folder_5(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

traverse_folder_5_old(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_folder_5_old(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

traverse_folder_5_old(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_folder_femur(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

traverse_folder_knees(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

traverse_folder_map(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

traverse_folder_map(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

traverse_folder_map(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

traverse_folder_map(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

traverse_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

traverse_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

Traverse the HNN subdirectories.

traverse_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

Traverse the HNN subdirectories.

traverse_folder_map(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

traverse_folder_org_img(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

traverse_folder_patella(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

traverse_gt_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

traverse_id(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

traverse_id(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

traverse_image_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

traverse_image_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

Traverse the test image folder

traverse_image_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

Traverse the test image folder

traverse_image_folder(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_Layer(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_Layer_DS(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_Layer_extra(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_Layer_extra(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_Layer_extra(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_Layer_ForNathan(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_layer_modified(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_layer_modified(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_Layer_noCoil(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_Layer_noCoil(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_Layer_noCoil(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

traverse_Layer_noCoil(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

traverse_Layer_noCoil(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

traverse_nii(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

traverse_nii(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

traverse_nii(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

traverse_orientation(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_orientation(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_orientation(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_patientID(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_patientID(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_patientID(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_scanLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_secondLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_secondLayer_DS(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_secondLayer_ForNathan(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_secondLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_secondLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_secondLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

traverse_secondLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

traverse_secondLayer_noCoil(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

traverse_secondLayer_noCoil_ext(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

traverse_secondLayer_noCoil_ext(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

traverse_serial(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

traverse_serial(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_serial(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

traverse_special(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

traverse_T2Layer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_T2Layer(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_T2Layer(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_T2Layer(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_T2Layer_deeper(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_T2Layer_deeper(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_T2Layer_deeper(File, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_thirdLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_thirdLayer_ForNathan(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_train_folds(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator

Traverse the specified 10-fold training directory

traverse_voi_folder(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

traverse_voiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

traverse_VoiLayer(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

traverse_voiLayer_ForNathan(File, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

traverseButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Control the tri-planar default view nevigation mode.

traverseButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Button for traversing the images.

traverseCurrent(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

traverseCurrent(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

traverseCurrent(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

traverseCurrent(File) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

traverseDeeper(File) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

traverseDicom(File, String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

traverseLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

traverseLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

traverseLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

traverseLevel1(File, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

traverseWall(AlgorithmNetworkSnake.PixelGrid.PixelGridNode, AlgorithmNetworkSnake.PixelGrid.PixelGridNode, int, boolean[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid

trbase - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

trcg(double, double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron

TreatmentInformation - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview

Information about a set of burns attempting to treat one of the target surfaces from the target list.

TreatmentInformation() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation

Create a new treatment set information object.

treatmentVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

List of treatment sets.

tred2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition

tree - Variable in class gov.nih.mipav.model.algorithms.KDTree.kdres

tree - Variable in class gov.nih.mipav.view.CheckTreeManager

tree - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir

tree - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreePanel

The file tree.

tree - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

tree - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags

The tree used to keep track of keys.

tree - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags

tree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

Tree() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Tree

Tree(Vector<Vector<Integer>>, Vector<Integer>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.Tree

TREE_CLASSIFICATION - gov.nih.mipav.model.algorithms.StochasticForests.TreeType

TREE_PROBABILITY - gov.nih.mipav.model.algorithms.StochasticForests.TreeType

TREE_REGRESSION - gov.nih.mipav.model.algorithms.StochasticForests.TreeType

tree_size - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

private Dimension initial_frame_size = new Dimension(725,800);.

TREE_SURVIVAL - gov.nih.mipav.model.algorithms.StochasticForests.TreeType

treeA - Variable in class gov.nih.mipav.view.JPanelTreeController

upper or left-most tree.

TREEA - Static variable in class gov.nih.mipav.view.JPanelTreeController

treeB - Variable in class gov.nih.mipav.view.JPanelTreeController

lower or right-most tree.

TREEB - Static variable in class gov.nih.mipav.view.JPanelTreeController

treeCheckBox - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

TreeClassification(Vector<Double>, Vector<Integer>, Vector<Vector<Integer>>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification

TreeClassification(Vector<Vector<Integer>>, Vector<Integer>, Vector<Double>, Vector<Double>, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification

treeCollapsed(TreeExpansionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory

Unchanged.

treeExpanded(TreeExpansionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory

Expands tree node in file tree.

treeLayout - Variable in class gov.nih.mipav.view.JPanelTreeController

DOCUMENT ME!

treeLevelColorChooser - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel

ColorChooser for changing graph colors.

TreeMouseAdapter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseAdapter

TreeMouseDragAdapter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeMouseDragAdapter

TreeNode(int, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.TreeNode

Creates a new tree node with the given data.

TreeNode(int, float) - Constructor for class gov.nih.mipav.view.RubberbandLivewire.TreeNode

Creates a new tree node with the given data.

TreeNodeData - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

TreeNodeData() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData

treeNodes - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes

treeNodesTemp - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SortedTreeNodes

treePanel - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

TreePostorder(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

TreeProbability(Vector<Double>, Vector<Integer>, Vector<Vector<Integer>>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability

TreeProbability(Vector<Vector<Integer>>, Vector<Integer>, Vector<Double>, Vector<Double>, Vector<Integer>, Vector<Vector<Double>>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability

TreeRegression() - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression

TreeRegression(Vector<Vector<Integer>>, Vector<Integer>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression

TreeRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer

Creates a new TreeRenderer object.

trees - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

treeScroll - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

treeSelectionChange - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

treeSelectionChange - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

treeSelectionChange - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

TreeSurvival(Vector<Double>, int, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival

TreeSurvival(Vector<Vector<Integer>>, Vector<Integer>, Vector<Double>, Vector<Vector<Double>>, Vector<Double>, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival

treetype - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

TreeType() - Constructor for enum gov.nih.mipav.model.algorithms.StochasticForests.TreeType

treFA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

treFA - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

treFA_phase0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

treFA_phase0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

treFA_phase180 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

treFA_phase180 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

treLong - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

tRes - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

tRes - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

tRes - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

tRes - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

tRes - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Resolution in the time dimension.

TRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

TRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

TRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

treTR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

treTR - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

treTR - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

TRfine - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

trgWindow - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

240 Trigger window (% of R-R interval).

tri - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mesh

Tri() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Tri

TRI - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer

tri_pochhammer(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit

tri_pochhammer(double, int) - Method in class gov.nih.mipav.model.algorithms.Fastfit

triangle - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry

Triangle - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry

Triangle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Triangle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Triangle() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Triangle

Creates a new Triangle object.

Triangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

Triangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle

Triangle(int, int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Triangle

Constructs a triangle in the table.

Triangle(int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Triangle

Triangle(LODMesh.Vertices, LODMesh.Vertices, LODMesh.Vertices) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

TRIANGLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction

DOCUMENT ME!

TriangleAttribute() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.TriangleAttribute

Construct an attribute for a triangle.

TriangleClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer

This class implements a 2D Triangle-shaped ClassficiationWidget.

TriangleClassificationWidget(int, int, Vector2f, Vector2f, Texture, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

TriangleCollapse(float, Vector<TriangleIndex>, Vector<Point3D>, Vector<Point3D>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Geometry

triangleCount() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData

triangleCount() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData

TriangleDetails(double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

TriangleDetails(Point2D, Point2D, Point2D) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails

triangleEdge(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

if the two of the first three triangle indices equal the second two indices, then the third index is returned.

triangleEdge(int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

if the two of the first three triangle indices equal the second two indices, then the third index is returned.

triangleEquals(int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Returns true if the first three triangle indices equal the second three indices.

triangleEquals(int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Returns true if the first three triangle indices equal the second three indices.

triangleExists(Point3i) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

Check to see if the triangle specified in the triangle list.

triangleExists(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

Check to see if the triangle specified in the triangle list.

triangleIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData

TriangleIndex - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry

TriangleIndex() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangleIndex

triangleLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The number of triangles label.

triangleLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

The number of triangles label.

TriangleMesh - Class in gov.nih.mipav.view.renderer.WildMagic.Decimate

TriangleMesh(VertexBuffer, IndexBuffer) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

triangles - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer

triangles - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

triangles - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

triangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

triangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData

triangles - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation

triangles - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes

Triangles() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

Triangles() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh

Returns a vector of triangles

TrianglesRenderer() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.TrianglesRenderer

triangleText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Displays the number of triangles.

triangleText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Displays the number of triangles.

triangulate - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

triangulate(ModelTriangleMesh, LinkedList, LinkedList, LinkedList, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

triangulates the mesh along a single geodesic.

triangulate(TriMesh, LinkedList, LinkedList, LinkedList, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

triangulates the mesh along a single geodesic.

triangulateMeshPath() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

re-triangulates the mesh along the Smoothed Geodesic.

triangulateMeshPath() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

re-triangulates the mesh along the Smoothed Geodesic.

Triangulation - Class in gov.nih.mipav.model.structures

Triangulation - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry

Triangulation() - Constructor for class gov.nih.mipav.model.structures.Triangulation

Triangulation() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation

TriangulationEdge - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry

TriangulationEdge() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangulationEdge

TriangulationTriangle - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry

TriangulationTriangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.TriangulationTriangle

TriEdges(int[][], int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

trigamma(double) - Method in class gov.nih.mipav.model.algorithms.Fastfit

triggerPopup(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.PopupListener

DOCUMENT ME!

triggerPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder.PopupListener

DOCUMENT ME!

triggerTime - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

triggerTime - Variable in class gov.nih.mipav.model.file.FilePARREC

triggerTimeIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

triggerTimePos - Variable in class gov.nih.mipav.model.file.FilePARREC

TRIGONOMETRIC - Variable in class gov.nih.mipav.model.algorithms.LsqFit

TRIGONOMETRIC - Variable in class gov.nih.mipav.model.algorithms.NESolve

TRIGONOMETRIC - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

trigPoly(double[][][][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

trigPoly(double[][][], double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

triImage - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

triImageFrame - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

The tri image frame of which this object is a component.

triImagePanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Tri image planar render panels.

triImagePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Tri image planar render panels.

triImagePanel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

TriL(CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Extract lower triangular part of matrix.

trilateralFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

DOCUMENT ME!

TRILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

Trilinear interpolation.

TRILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Trilinear interpolation.

TRILINEAR - Static variable in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.InterpolationType

trilinearFlag - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample

Whether to perform trilinear filtering when getting intensities of points on the source image.

TrilinearInterpolateDefField(ModelImage, int, int, int, double, double, double, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

TrilinearInterpolation(float[], int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

TrilinearInterpolation(float[], int, int, int, double, double, double, int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

TrilinearInterpolation(ModelImage, int, int, int, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

trim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth

Trim out nearly collinear points.

trim - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

trim - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

trim - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

DOCUMENT ME!

trim() - Method in class gov.nih.mipav.model.structures.VOI

Trims all active contours in the VOI based on the Preferences getTrim and getTrimAdjacent values.

trim(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor

Trim(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Removes the extreme 'percentage' part of the vector.

trimCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Checkbox for whether adjacent points are trimmed

trimCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

trimCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

trimCOR(String) - Static method in class gov.nih.mipav.model.file.FileUtility

Trims the numbers or file extension from COR file names.

triMesh - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

triMesh - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

TriMesh - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

TriMesh() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

trimIgnorableChar(String) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Trims the numbers and special character from the file name.

trimIntensityThreshold(ModelImage, BitSet, BitSet) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

trim the mask using the intensity

trimmedFileName - Variable in class gov.nih.mipav.model.file.FilePaintBitmap

File name without the extension.

trimmedFileName - Variable in class gov.nih.mipav.model.file.FileVOI

File name without the extension.

TrimmedMean(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the trimmed mean.

TrimmedStd(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the trimmed standard deviation.

TrimmedVar(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the trimmed variance.

trimmer(String) - Static method in class gov.nih.mipav.model.file.FileMicroCat

Trims the numbers(numerics and some special characters [-, _, .) off the end of a string (file name).

trimNumbersAndSpecial(String) - Static method in class gov.nih.mipav.model.file.FileUtility

Trims the numbers and special character from the file name.

trimPoints(double, boolean) - Method in class gov.nih.mipav.model.structures.VOIBase

Trims a contour and then removes collinear points in the resulting contour.

trimVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage

trimVOIsInSingleImage(ModelImage, int, int, Vector<Vector3f>, Vector<Vector3f>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

In Dicom space, central contours projections to eliminate the extra contours at the apex and base.

trimVOIsInSingleImage(ModelImage, int, int, Vector<Vector3f>, Vector<Vector3f>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

In Dicom space, central contours projections to eliminate the extra contours at the apex and base.

triPlanarAlphaBlend - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

DOCUMENT ME!

triPlanarClosing() - Method in class gov.nih.mipav.view.ViewJFrameImage

DOCUMENT ME!

triPlanarViewBG - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Triplanar view branch group, which hold the three plane view and the slice box frame view.

Triplet() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Triplet

Triplet(int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Triplet

Triplet(T, U, V) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.Triplet

TripletSparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

TripletSparseMatrix(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

TripletSparseMatrix(int, int, Vector<Integer>, Vector<Integer>, Vector<Double>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

TripletSparseMatrix(CeresSolver.TripletSparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

TripletSparseMatrixRandomMatrixOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrixRandomMatrixOptions

TriRapideStochastique(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

TriRapideStochastique_dec(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

TriRapideStochastique_inc(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

triSliceGeometry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

triSliceImages - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

ImageRenderers for the AXIAL, CORONAL, SAGITTAL slices:

triTable - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes

TriTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceExtractImage

TriU(CDMatrix, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Extract upper triangular part of matrix.

triunc(double, int, int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

triunc(DoubleDouble, int, int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

TrivialLoss() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrivialLoss

trLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

trLimits - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D

Array of translation and rotation limits for each dimension.

trLimits - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase

Array of translation and rotation limits for each dimension.

trMax - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

trMin - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

tRNS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

trnSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext

List of transfer syntaxes approiate for the abstract syntax.

trnSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept

PDU item type transfer syntax.

tron(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron

Tron - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm

Copyright (c) 2007-2014 The LIBLINEAR Project.

Tron(Function) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron

Tron(Function, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron

Tron(Function, double, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Tron

TRRAD - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

TRString - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

TRSV - gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

trText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

TRUE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU

true_gamma(double) - Method in class gov.nih.mipav.model.algorithms.Cephes

TRUE_GAMMA - Static variable in class gov.nih.mipav.model.algorithms.Cephes

trueArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

trueBoundingVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

DOCUMENT ME!

trueFound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

in the true image.

trueFound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

number of the absoluteTrue found in the test image.

trueID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

trueID - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

DOCUMENT ME!

trueImage - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

trueImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

DOCUMENT ME!

trueImage - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

DOCUMENT ME!

trueImageExtension - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

trueImageFileDirectory - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

trueImageFileName - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

trueLevelArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

trueLevels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation

DOCUMENT ME!

trueStart - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

trueVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation

DOCUMENT ME!

trunc() - Method in class gov.nih.mipav.util.DoubleDouble

Returns the integer which is largest in absolute value and not further from zero than this value.

trunc_thresh - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

truncate(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Trims string to length.

Truncate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform

Truncate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Truncate eigenvectors and eigenvalues to retain the 'n' largest.

truncateArray(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse

TRUNCATED_MEDIAN - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

TRUNCATED_MEDIAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

truncatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

TruncateParallel() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform

TruncateParallel() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Truncate eigenvectors and eigenvalues using parallel analysis.

truncateRGB(float, float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage

truncat RGB based on heuristic parameters

TruncateVar(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform

TruncateVar(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Truncate eigenvectors and eigenvalues to retain 'retained_variance'.

truncMultColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage

arry of r,g,b after scaling/truncating *

truncMultPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

panels *

truncMultPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

panels *

truncMultRadioGroup - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

radio group for truncate/multiply *

truncMultRadioGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

radio group for truncate/multiply *

truncRadio - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

radio buttons for truncate/multiply *

truncRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

radio buttons for truncate/multiply *

TRUST_REGION - gov.nih.mipav.model.algorithms.CeresSolver.MinimizerType

TRUST_REGION - Variable in class gov.nih.mipav.model.algorithms.NESolve

trust_region_minimizer_iterations_to_dump - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

trust_region_minimizer_iterations_to_dump - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

trust_region_problem_dump_directory - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

trust_region_problem_dump_directory - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

trust_region_problem_dump_format_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

trust_region_problem_dump_format_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

trust_region_radius - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.IterationSummary

trust_region_step_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

trust_region_strategy - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

trust_region_strategy_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

trust_region_strategy_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

trust_region_strategy_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions

TrustRegionMinimizer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

TrustRegionMinimizerGradientToleranceConvergenceUpdatesStep() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionMinimizerJacobiScalingTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionMinimizerPowellsSingularFunctionUsingDogleg() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionMinimizerPowellsSingularFunctionUsingLevenbergMarquardt() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionOptionsAreValid(String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

TrustRegionPreprocessor() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor

TrustRegionPreprocessorParameterBlockBoundsAreInvalid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorParamterBlockIsInfeasible() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorProblemWithInvalidParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorRemoveParameterBlocksFailed() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorRemoveParameterBlocksSucceeds() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorTestInnerIterationsWithOneParameterBlock() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionPreprocessorZeroProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

TrustRegionStepEvaluator(double, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator

TrustRegionStrategy() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategy

TrustRegionStrategyOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyOptions

TrustRegionStrategyPerSolveOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyPerSolveOptions

TrustRegionStrategySummary() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategySummary

TrustRegionStrategyType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyType

TRY_AGAIN - Variable in class gov.nih.mipav.model.algorithms.CVODES

tryAdvance(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator

tryAdvance(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator

tryAdvance(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator

tryAdvance(Consumer<? super P>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator

tryAdvance(Consumer<? super T>) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator

tryCustomProcessFormat(int, int, long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler

tryCustomProcessFormat(int, int, long) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

tryEnterSubIfd(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifTiffHandler

tryEnterSubIfd(int) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

tryPartitionByMediaUID(FileInfoDicom[]) - Method in class gov.nih.mipav.model.file.FileIO

partition into image subsets using media instance uids

trySkip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

trySkip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader

Skips forward in the sequence, returning a boolean indicating whether the skip succeeded, or whether the sequence ended.

trySkip(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

trySplit() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator

trySplit() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator

trySplit() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator

trySplit() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator

trySplit() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator

tryToStoreResultImageInRunner(ModelImage) - Method in class gov.nih.mipav.view.dialogs.AlgorithmParameters

DOCUMENT ME!

ts - Variable in class gov.nih.mipav.model.file.FileGESigna4X

ts - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

tsaitr - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

Tsallis_Sqrt(double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection

tsapps - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tsaup2 - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tsaupd - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tsconv - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tseigt - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tsgets - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

TSJAC3(int[], int[], double[], double[][], int, int[], int, int, int, int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

tSlice - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

Image time sequence number of image that is displayed.

tSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Which time slice is currently displayed.

tSlice - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Which time slice is currently displayed.

tSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

Image time sequence number of image that is displayed.

tSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Which time slice is currently displayed.

tSlice - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Time slice that this image is on.

tSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

tSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

DOCUMENT ME!

tSliderDictionary - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

DOCUMENT ME!

tSliderPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

DOCUMENT ME!

tsm - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DenseSparseMatrixTest

tsm - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest

tsm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix

tsm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix

tsmooth(double[][], double, int, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion

tSpace - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

tSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

tstart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

tStart - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

Time.

tStart - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

tStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

TSTNG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

tStop - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

TSTPLT(double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

TSTPLT(double[], double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

tt - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

Tt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD

Reference: Gang Cao, Lihui Huang, Huawei Tian, Xianglin Huang, Yongbin Wang, Ruicong Zhi.

Tt - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD

tt1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

tTable - Static variable in class gov.nih.mipav.model.algorithms.StatisticsTable

t-statistics table

TTail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

tTalVoxLabel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

talairach voxel label *

TTest(int, int, double[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Student's T-test.

ttp - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

tType - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

tType - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Tubes - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

tubeType - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

66.

TukeyLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss

TUMOR_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Value which indicates a voxel in the segmenation image that is part of the tumor.

TUMOR_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Value which indicates a voxel in the segmenation image that is part of the tumor.

tunable - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser

tUnits - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Deprecated.

tuple2i(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i

turboFactor - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

turboFactor - Variable in class gov.nih.mipav.model.file.FilePARREC

turboFactorIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

turboFactorPos - Variable in class gov.nih.mipav.model.file.FilePARREC

turn(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity

TURN_REP - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity

Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.

TURN_REP() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TURN_REP

TURN_REP_REC - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity

Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.

TURN_REP_REC() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.TURN_REP_REC

turnOffLogging() - Static method in class gov.nih.mipav.view.LogStdStreams

DOCUMENT ME!

turnrep - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity

Ported to Java from C code from http://www8.cs.umu.se/kurser/TDBAfl/VT06/algorithms/WEBSITE/IMPLEMEN/TURN/IMPLEMEN.HTM May only be used for non-commercial purposes.

turnrep() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.turnrep

tv(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tVal - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

tvl1 - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

tvl1 - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

tvl1 - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

TVL1Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

TVL1FLOW - Class in gov.nih.mipav.model.algorithms

TVL1FLOW() - Constructor for class gov.nih.mipav.model.algorithms.TVL1FLOW

TVL1FLOW(ModelImage, ModelImage, ModelImage, ModelImage, double, double, double, int, double, int, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.TVL1FLOW

tvsimp(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

tvwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

tw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

number of tiles in width

TWELVE - Variable in class gov.nih.mipav.model.algorithms.CVODES

twentyPercent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

twentyPercent - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

twentySixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

twentySixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

twentySixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion

twentySixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

twist(float, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Called when the JPanelProbe twist slider is changed.

twist_kernel - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

twistKernelInterleaved - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

twistKernelPlannar - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan

TWO - Variable in class gov.nih.mipav.model.algorithms.CVODES

TWO - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream

TWO - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream

TWO_NORM - gov.nih.mipav.model.structures.jama.SuperLU.norm_t

two_pass_quantize - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

TWO_PI - Static variable in class gov.nih.mipav.util.DoubleDouble

The value nearest to the constant 2 * Pi.

TWOALPHA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality

TWOBETA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality

twoButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

twoButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

twoDButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

twoDButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

TWODELTA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality

twoFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice

DOCUMENT ME!

twoFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice

DOCUMENT ME!

TWOGAMMA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality

twoJacobiIter - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

twoJacobiIter - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

twoJacobiIter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

TWOMM - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

TWOMM - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

TWOMM2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

TWOMM2 - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

twoMM2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

twoMMButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection

twoParameterFittingCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.twoParameterFittingCostFunction

twoPContraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPContraction - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPDownHillSimplex(double[], double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPExpansion - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPExpansion - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twophase - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges

twophase - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

twoPhaseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

DOCUMENT ME!

twoPi - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage

two pi *

TwoPi - Variable in class gov.nih.mipav.model.algorithms.Poly

twoPReflection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPReflection - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPShrink - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPShrink - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPSimplex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPSimplex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPSimplexCentre - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPSimplexCentre - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPSimplexLineValues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPSimplexLineValues - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twoPSimplexResiduals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2

twoPSimplexResiduals - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

twor() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

twor() - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

twoSmooth - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

twoSmooth - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

twoSmooth - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

TWOTHIRDSAMPLE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

twou - Variable in class gov.nih.mipav.model.algorithms.ODE

twou - Variable in class gov.nih.mipav.model.algorithms.ODEEP

tx - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D

tX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience

tx0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

XTOsiz

tx0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

tx0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values for Tile width and height

tx0_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Temporary values for Tile parts, initialised in pi_create_encode

tx1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

tx1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values for Tile width and height

txE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values of Tile width and height, initialised in pi_initialise_encode

TxFont - Static variable in class gov.nih.mipav.model.file.FileLIFF

txS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values of Tile width and height, initialised in pi_initialise_encode

TxSize - Static variable in class gov.nih.mipav.model.file.FileLIFF

TXT - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer

txtChannels - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

txtDirectory - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

txtHeight - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

txtResampleHeight - Variable in class gov.nih.mipav.view.ViewFileChooserSubsample

DOCUMENT ME!

txtResampleWidth - Variable in class gov.nih.mipav.view.ViewFileChooserSubsample

DOCUMENT ME!

txtSlices - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

txtStr - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text

txtTimePoints - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

txtWidth - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

DOCUMENT ME!

ty - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TranslatedPoint2D

tY - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience

ty0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_cp_t

YTOsiz

ty0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

ty0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values for Tile width and height

ty0_t - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Temporary values for Tile parts, initialised in pi_create_encode

ty1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

ty1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values for Tile width and height

tyE - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values of Tile width and height, initialised in pi_initialise_encode

type - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig

type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions

type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions

type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions

type - Variable in class gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver

type - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

type - Variable in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient

type - Variable in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType

type - Variable in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE

type - Variable in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

type - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat

type - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

type - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

type - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm

type - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tform

type - Variable in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

type - Variable in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR

type - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit

type - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector

type - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Filter.FilterType

type - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.FilamentArc

Attributes.

type - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser

attributes.

type - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Microscope

type - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

type - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_marker_info_t

marker type

type - Variable in class gov.nih.mipav.model.file.FilePackBit

Image type ID.

type - Variable in class gov.nih.mipav.model.file.FileRawChunk

DOCUMENT ME!

type - Variable in class gov.nih.mipav.model.file.RawImageInfo

DOCUMENT ME!

type - Variable in class gov.nih.mipav.model.scripting.parameters.Parameter

The parameter value data type.

type - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

type - Variable in class gov.nih.mipav.model.structures.jama.METIS.gk_mop_t

type - Variable in class gov.nih.mipav.model.structures.ModelLUT

DOCUMENT ME!

type - Variable in class gov.nih.mipav.view.ColorWheel

type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM

type - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *

type - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

type - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

type - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

type - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

type - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *

type - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage

type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *

type - Variable in class gov.nih.mipav.view.ViewJSlider

Refers to the type of slider being used by MIPAV

type() - Method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE

Type - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Type(int) - Constructor for enum gov.nih.mipav.model.file.FileSVS.Type

Type(int) - Constructor for enum gov.nih.mipav.model.file.FileTiff.Type

Type() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

Get transfer function id.

TYPE - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

type_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradient

TYPE_AE - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_AMBIENT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Ambient light constant.

TYPE_AS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_ASCII - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TYPE_AT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_CS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_DA - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_DIRECTIONAL - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Directinal light constant.

TYPE_DS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_DT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_FAST - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

TYPE_FAST - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

TYPE_FD - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_FL - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_IS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_LO - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_LONG - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TYPE_LT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_LUT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

TYPE_LUT - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

TYPE_NONE - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_OB - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_OW - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_PN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_POINT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Point light constant.

TYPE_RATIONAL - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

TYPE_SH - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_SL - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_SPOT - Static variable in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Spot light constant.

TYPE_SQ - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_SS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_ST - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_SUBBLOCK - Static variable in class gov.nih.mipav.model.file.FileLSM

Values for types in scan information.

TYPE_TM - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_UI - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_UL - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_UNKNOWN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_US - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

TYPE_UT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

typeCode - Variable in class gov.nih.mipav.model.dicomcomm.RTCEntry

DOCUMENT ME!

typeCodeNames - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

typeCodeNamesFilled - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

DOCUMENT ME!

typeDefaultExtensions - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO

DOCUMENT ME!

typeDescriptions - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO

DOCUMENT ME!

TypedLinearSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TypedLinearSolver

TypedPreconditioner() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.TypedPreconditioner

typeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

typeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

typeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

typeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

typeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

TypeInfo() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

Get type info

typeInts - Static variable in class gov.nih.mipav.view.dialogs.JDialogUnknownIO

DOCUMENT ME!

typeMax - Variable in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType

Max value allowed of the type

typeMin - Variable in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType

Min value allowed of the type

TypeName() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity

Get the transfer function identity name

TypeName() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp

Returns the clear-text type name

TypeName() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch

Returns the clear-text type name.

TypeName() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction

Type name.

typeOf(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType

typeOf(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorEncoding

typeOf(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm

typeOf(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent

typeOf(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory.DisposalMethod

typeOf(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression

typeOf(long) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType

typeOf(MetadataExtractor.BmpHeaderDirectory) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression

typeString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

typeStringType - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

TYPICAL_CHROMINANCE_AC_LENGTHS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_CHROMINANCE_AC_VALUES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_CHROMINANCE_DC_LENGTHS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_CHROMINANCE_DC_VALUES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_LUMINANCE_AC_LENGTHS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_LUMINANCE_AC_VALUES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_LUMINANCE_DC_LENGTHS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

TYPICAL_LUMINANCE_DC_VALUES - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

tyS - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_poc_t

Start and end values of Tile width and height, initialised in pi_initialise_encode

tZ - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

holds the current value of the space navigator. normalized on a -100 to 100 scale for cross platform/calculating convenience

TZC - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

Int denoting TZC sequence

Tzz_freq_resp(double[][], double[][], double[][], double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis

U

u - Variable in class gov.nih.mipav.model.algorithms.curev

u - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic

Input argument

u - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

U - Static variable in class gov.nih.mipav.model.algorithms.Cephes

U - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

U - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

U - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox

U - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition

Arrays for internal storage of U and V.

U16BIT - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

U2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

U8BIT - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

UARY - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

UberFlags() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

UberV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

ubfactors - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

UBUNTU_MONO_BOLD - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_BOLD_RESOURCE - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_BOLDITALIC - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_BOLDITALIC_RESOURCE - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_ITALIC - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_ITALIC_RESOURCE - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_PLAIN - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBUNTU_MONO_PLAIN_RESOURCE - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.FontProvider

UBYTE - gov.nih.mipav.model.structures.ModelStorageBase.DataType

Data buffer is of type unsigned byte (8 bits per voxel).

UBYTE - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the data buffer is of type unsigned byte (8 bits per voxel).

UBYTE_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate, as a String, that the data buffer is of type unsigned byte.

ubyteImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

Usigned byte image, the actual image to do the morphology calculation.

UC - gov.nih.mipav.model.file.FileDicomTagInfo.VR

UCenterOffset - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

UCLA - Static variable in class gov.nih.mipav.model.structures.ModelLUT

ucol - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

UCOL - gov.nih.mipav.model.structures.jama.SuperLU.MemType

ucoldc - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

UDEF - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

User defined

udefExtsString - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

This is the user defined file extensions String

ufactor - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

ufclAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling

DOCUMENT ME!

ufeta_qrfact - Variable in class gov.nih.mipav.model.algorithms.NL2sol

uflow - Variable in class gov.nih.mipav.model.algorithms.Integration2

DOCUMENT ME!

uflow - Variable in class gov.nih.mipav.model.algorithms.Integration2EP

For doubles uflow = 2**-1022, but a double has 53 bits of precision while a DoubleDouble has 106 bits of precision, so uflow = 2**-(1022 - 53) = 2**-969

uftolg_calcjTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

uftolg_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

ui - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin

The default user interface

ui - Variable in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin

The main user interface

ui - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

UI - gov.nih.mipav.model.file.FileDicomTagInfo.VR

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

UI - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

UI - Variable in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

UI - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

UI - Variable in class gov.nih.mipav.model.algorithms.Quaternions

UI - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

UI - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.file.FileIO

Reference to the user interface.

UI - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.model.file.FileSVS

UI - Variable in class gov.nih.mipav.model.file.FileTiff

UI - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

UI - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

Common variables in testing routines.

UI - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations

UI - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations2

UI - Variable in class gov.nih.mipav.model.structures.jama.LinearEquations3

UI - Variable in class gov.nih.mipav.model.structures.jama.LUSOL

UI - Variable in class gov.nih.mipav.model.structures.jama.LUSOLEP

UI - Variable in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue

Common variables in testing routines.

UI - Variable in class gov.nih.mipav.model.structures.jama.SelectedEigenvalue2

Common variables in testing routines.

UI - Variable in class gov.nih.mipav.model.structures.jama.SparseEigenvalue

UI - Variable in class gov.nih.mipav.model.structures.jama.SVD

Common variables in testing routines.

UI - Variable in class gov.nih.mipav.model.structures.ModelImage

The user interface has a vector of all image models loaded into MIPAV.

UI - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts

The MIPAV user interface

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

handle to UI

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

UI - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

global user interface to get the three active images.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

global user interface to get the three active images.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

The main user interface.

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI

UI - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI

UI - Variable in class gov.nih.mipav.view.ViewDirectoryChooser

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.ViewFileChooserBase

DOCUMENT ME!

UI - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

The main user interface.

UI - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

The main user interface.

UI - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages

The current user interface

UI - Variable in class gov.nih.mipav.view.ViewOpenPaintUI

The main user interface.

UI - Variable in class gov.nih.mipav.view.ViewOpenVOIUI

The main user interface.

UI - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

The class which wants to listen to changes made to this components of the toolbars.

UIC1Tag - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

UIC2Tag - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

UIC3Tag - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

UIC4Tag - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

UID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase

DOCUMENT ME!

UID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_SOP

Unique identifier.

UID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification

Unique identifier.

UID - Variable in class gov.nih.mipav.model.structures.VOI

Unique ID for saving & retrieving.

UID_ApplicationContext - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Application context UID = 1.2.840.10008.3.1.1.1

UID_CRStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

CR Storage UID = 1.2.840.10008.5.1.4.1.1.1

UID_CTStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

CT Storage UID = 1.2.840.10008.5.1.4.1.1.2

UID_EnhancedCTStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Enhanced CT Storage UID = 1.2.840.10008.5.1.4.1.1.4.1

UID_EnhancedMRStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Enhanced MR Storage UID = 1.2.840.10008.5.1.4.1.1.4.1

UID_EnhancedXAStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Enhanced XRAY Storage UID = 1.2.840.10008.5.1.4.1.1.12.1.1

UID_GECTStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_GEMRStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_MRStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

MR Storage UID = 1.2.840.10008.5.1.4.1.1.4

UID_NMStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

NM (Nuclear med) Storage UID = 1.2.840.10008.5.1.4.1.1.20

UID_OldNMStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Old NM Storage UID = 1.2.840.10008.5.1.4.1.1.5

UID_OldUSMultiframeStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Old US MultiframeStorage UID = 1.2.840.10008.5.1.4.1.1.3.

UID_OldUSStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Old US Storage UID = 1.2.840.10008.5.1.4.1.1.6.

UID_PatientRootQuery - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_PatientRootRetrieve - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_PatientStudyOnlyQuery - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_PatientStudyOnlyRetrieve - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_PetStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Pet Storage UID = 1.2.840.10008.5.1.4.1.1.128

UID_RLE_Compression - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTBeamsTreatmentRecordStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTBrachyTreatmentRecordStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTDoseStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTImageStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTPlanStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTStructureSetStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_RTTreatmentSummaryRecordStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_SCStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

SC (Secondary Capture) Storage UID = 1.2.840.10008.5.1.4.1.1.7

UID_StandaloneCurveStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Standalone Curve Storage UID = 1.2.840.10008.5.1.4.1.1.9

UID_StandaloneModalityLUTStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Standalone Modality LUT Storage UID = 1.2.840.10008.5.1.4.1.1.10

UID_StandaloneOverlayStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Standalone Overlay Storage UID = 1.2.840.10008.5.1.4.1.1.8

UID_StandalonePetCurve - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_StandaloneVOILUTStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Standalone VOI LUT Storage UID = 1.2.840.10008.5.1.4.1.1.11

UID_StudyRootQuery - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_StudyRootRetrieve - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferBIGENDIANEXPLICIT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEG2000 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

UID_TransferJPEG2000LOSSLESS - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

UID_TransferJPEGBASELINEPROCESS1 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGEXTENDEDPROC16AND18 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGEXTENDEDPROC17AND19 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGEXTENDEDPROC2AND4 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGEXTENDEDPROC3AND5 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGFULLPROGRESSPROC10AND12 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGFULLPROGRESSPROC11AND13 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGFULLPROGRESSPROC24AND26 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGFULLPROGRESSPROC25AND27 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGLOSSLESSPROC14 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGLOSSLESSPROC15 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGLOSSLESSPROC28 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGLOSSLESSPROC29 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGLOSSLESSPROCFIRSTORDERREDICT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGSPECTRALPROC20AND22 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGSPECTRALPROC21AND23 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGSPECTRALPROC6AND8 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferJPEGSPECTRALPROC7AND9 - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferLITTLEENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_TransferLITTLEENDIANEXPLICIT - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

DOCUMENT ME!

UID_USMultiframeStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

US Multiframe Storage UID = 1.2.840.10008.5.1.4.1.1.3.1.

UID_USStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

US Storage UID = 1.2.840.10008.5.1.4.1.1.6.1

UID_Verification - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

Verification UID = 1.2.840.10008.1.1

UID_XRayAngioStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

XRayAngioStorage UID = 1.2.840.10008.5.1.4.1.1.12.1

UID_XRayFluoroStorage - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Constants

XRay Fluoro Storage UID = 1.2.840.10008.5.1.4.1.1.12.2

UIDfield - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

uid of the selected voi

uids - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

UINTEGER - gov.nih.mipav.model.structures.ModelStorageBase.DataType

Data buffer is of type unsigned integer (32 bits per voxel).

UINTEGER - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the data buffer is of type unsigned integer (32 bits per voxel).

UINTEGER_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate, as a String, that the data buffer is of type unsigned integer.

uintToString(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests

UIParams(String, int, String, String) - Constructor for class gov.nih.mipav.view.CustomUIBuilder.UIParams

UIParams(String, String, int, String, String) - Constructor for class gov.nih.mipav.view.CustomUIBuilder.UIParams

UIParams(String, String, int, String, String, boolean) - Constructor for class gov.nih.mipav.view.CustomUIBuilder.UIParams

UIParams(String, String, String) - Constructor for class gov.nih.mipav.view.CustomUIBuilder.UIParams

uiparm - Variable in class gov.nih.mipav.model.algorithms.NL2sol

ukow_calcjTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

ukow_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

UL - gov.nih.mipav.model.file.FileDicomTagInfo.VR

ULONG - Static variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

ultErodeObjects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

DOCUMENT ME!

ultErodeObjects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

DOCUMENT ME!

ultErodeObjects - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

DOCUMENT ME!

ULTIMATE_ERODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

DOCUMENT ME!

ultimateErode(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D

Ultimate erodes objects down to a single pixel (almost).

ultimateErode(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D

Erodes to a single point.

ULTRASOUND - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality ultrasound.

ULTRASOUND - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality ultrasound.

ULVL - gov.nih.mipav.model.structures.jama.SuperLU.MemType

UmStop(CDVector, CDVector, double, double, CDVector, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

Decide wether to terminate minimization Modified version of Algorithm A7.2.1 p. 347 Dennis and Schnabel, Numerical Methods for Unconstrained Optimization and Nonlinear Equations 1983, Prentice-Hall Input: x: parameter xplus: new parameter fplus: function value for new parameter g: gradient at x retcode: return code from line search maxtaken: max taken in line search Output: return termination code

UmStop0(CDVector, double, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase

UN - gov.nih.mipav.model.file.FileDicomTagInfo.VR

Un_prime - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

UnaryCostFunction(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction

UnaryCostFunction2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction2

UnaryCostFunction3(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction3

UnaryCostFunction4(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryCostFunction4

UnaryIdentityCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.UnaryIdentityCostFunction

UNBUNDLED - gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state

uncaughtException(Thread, Throwable) - Method in class gov.nih.mipav.util.MipavExceptionHandler

uncheckAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM

buttons for toolbar *

unCheckButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

DOCUMENT ME!

unCheckButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

unCheckButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

DOCUMENT ME!

unCheckButton - Variable in class gov.nih.mipav.view.JPanelChecklist

DOCUMENT ME!

UncoarsenTmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

uncompData - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder

DOCUMENT ME!

Uncompressed - Static variable in class gov.nih.mipav.model.file.FileCZI

UNDEFINED - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType

UNDEFINED - gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType

UNDEFINED - gov.nih.mipav.model.file.FileSVS.Type

8 bit undefined

UNDEFINED - gov.nih.mipav.model.file.FileTiff.Type

8 bit undefined

UNDEFINED - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

UNDEFINED - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

UNDEFINED - Static variable in class gov.nih.mipav.model.file.FileUtility

Undefined file type.

UNDEFINED_LENGTH - Variable in class gov.nih.mipav.model.file.FileDicom

Undefined element length.

UNDEFINED_PIXEL_REP - Static variable in class gov.nih.mipav.model.file.FileInfoDicom

(0028,0103) Pixel Representations

undo() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

VOI operation undo.

undoButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Button to undo the last region grow change (either a click of the grow button, or an adjustment of the threshold sliders).

undoCrop() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Undo the crop of the volume.

undoCropVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Undo crop region with the clipped volume.

undoCropVolume() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Undo crop region with the clipped volume.

undoFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

Cancel Button has been pressed: Copy the unaltered original data into the ModelImage.

undoImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

undoLastPaint() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Undoes the last paint.

undoModel - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes

Model to restore last model of JTable

undoMosaic() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

undoMosaic -- Restores the backed-up ImageTransforms, PolygonShapes, BorderShapes, and ModelImages after an undo button press:

undoSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

undoSculpt: abstract function, implementation depends on whether the instance is VolumeTextureSculptor or VolumeSculptor.

undoSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor

undoSculpt: called by the ViewJFrameVolumeView object when the user presses the "Undo Sculpt" button.

undoSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor

undoSculpt: called by the ViewJFrameVolumeView object when the user presses the "Undo Sculpt" button.

undoSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Undo applying the sculpt region to the volume.

undoSculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Undo applying the sculpt region to the volume.

undoSculpt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM

Undo the sculpt.

undoSculpt(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

Called by the TextureSculptor or VolumeSculptor objects.

undoSculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor

undoSculptRegion: called when the "Undo Sculpt" Button is pressed.

undoSculptRegion(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM

undoSculptRegion: called when the "Undo Sculpt" Button is pressed.

undoVOI() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

undoVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

undoVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

UneditableTableModel - Class in gov.nih.mipav.model.structures

Title: UneditableTableModel

UneditableTableModel() - Constructor for class gov.nih.mipav.model.structures.UneditableTableModel

Creates a new UneditableTableModel object.

uneliminated_row_begins_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator

unequalDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

If true allow unequal FFT dimensions.

unequalDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

If true allow unequal FFT dimensions.

unequalDim - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT

If true allow unequal FFT dimensions.

unequalDim - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

Boolean telling if unequal dimensions are allowed in the FFT image.

unequalDim - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

Whether FFT algorithm can return non-equal x,y dimensions

unequalDimCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

Indicates whether user wants FFT to return non-equal x,y dimensions

unequalRangeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

UNEXPECTED_OUTPUT - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType

ungroupVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage

Forms separate VOIs from all the VOI structures presently loaded in the imageModel.

uni_elt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.uni_elt

UNIFIED2D - Static variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

Uniform - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType

Uniform(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

UNIFORM - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise

Used to indicate Uniform distribution of noise.

UNIFORM - Static variable in class gov.nih.mipav.view.dialogs.JDialogNoise

DOCUMENT ME!

uniform_data - Variable in class gov.nih.mipav.model.algorithms.Erfinv

Original C++ code by Lakshay Garg ported to Java by William Gandler Implementation of the inverse error function based on the rational approximation of percentage points of normal distribution available from https://www.jstor.org/stable/2347330. 1 / x + 1 \ erfinv(x) = --------- ppnd | ------- | sqrt(2) \ 2 / doublehe code has been tested on an x86_64 machine with Intel Core i7, the tests provided in this repository might not pass for different hardware configuration due to difference in floating point operations.

UNIFORM_RADIUS - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration

uniformAngleSpacing - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

uniformAngleSpacing - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

uniformButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

uniformFilter(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.ImageQuality

unImagesData - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

224.

unImagesLen - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

220 - (internal use) Unstored Image keys in Series.

UNINSTALL - Static variable in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin

UNINSTALL - Static variable in class gov.nih.mipav.view.ViewJPopupPlugin

uninstallPlugins() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin

unionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

DOCUMENT ME!

UnionedWith(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

UnionedWith(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape

uniq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

4 - (internal use) Make-Unique Flag.

uniqSysID - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

438 - 16 bytes.

unique(int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

unique_data_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data

unique_timepoints - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

unique_timepoints - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival

uniqueID - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Unit(int, String, String, FileInfoBase.UnitType) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.Unit

Unit(int, String, String, FileInfoBase.UnitType, double) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.Unit

UNIT - Static variable in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter

Scale type: d' = (d-min)/(max-min) in [0,1]

UNIT_ROUNDOFF - Variable in class gov.nih.mipav.model.algorithms.CVODES

UnitQuaternionRotatePoint(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2

units - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

units - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

units - Variable in class gov.nih.mipav.model.file.RawImageInfo

DOCUMENT ME!

units - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

Storage of the resolution units of measure.

units - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries

DOCUMENT ME!

units - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

units - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Units of measure of imageA.

units - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

Storage of the resolution units of measure.

units - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

units - Variable in class gov.nih.mipav.view.ViewJFrameImage

Storage of the resolution units of measure.

units - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Storage of the resolution units of measure.

units - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Units of image - mm, inches, etc.

UNITS_HZ_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

UNITS_MSEC_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni

time step units.

UNITS_SEC_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

units3D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

units4D - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

unitsCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

DOCUMENT ME!

unitsIndex - Variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

unitSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

one unit is one totalBin-th of the distance between max & min brightness.

unitsOfMeasure - Variable in class gov.nih.mipav.model.file.FileBMP

unitsOfMeasure - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

unitsOfMeasure - Variable in class gov.nih.mipav.model.file.FileInfoBase

Describes the units of measure for the dataset.

unitsOfMeasure - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

unitsOfMeasure - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO

DOCUMENT ME!

unitsStr - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

unitsStr - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

unitsStr - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions

DOCUMENT ME!

unitsString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

unitsString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

UnitType() - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.UnitType

unitVarianceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

unitVarianceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

UNIVERSAL_QUALITY_IMAGE_INDEX - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

universalCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

universalCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

universalImageQualityIndex - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

universalRotationCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

universalTranslationCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

universe - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

The SimpleUniverse object which is the parent of everything else in the scene.

universe(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.universe

Unknown - gov.nih.mipav.model.file.MetadataExtractor.FileType

UNKNOWN - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

UNKNOWN - gov.nih.mipav.model.algorithms.SIFT3D.im_format

UNKNOWN - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

Data with VR "UN"

UNKNOWN - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

UNKNOWN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_TransferSyntaxUtil

Static that defines UNKNOWN.

UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileLIFF

UNKNOWN - Static variable in class gov.nih.mipav.model.file.FileNRRD

DOCUMENT ME!

UNKNOWN - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass

UNKNOWN - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

Indicates tag value may exist but cannot be understood by the dialog.

UNKNOWN_MEASURE - gov.nih.mipav.model.file.FileInfoBase.Unit

Unit of measurement unknown.

UNKNOWN_MEASURE - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Unit of measurement unknown.

UNKNOWN_MODALITY - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality unknown.

UNKNOWN_MODALITY - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality unknown.

UNKNOWN_ORIENT - Static variable in class gov.nih.mipav.model.file.FileInfoAnalyze

The data_history substructure is not required, but the orient element is used to indicate individual slice orientation and determines whetther the Analyze Movie program will attempt to flip the images before displaying a movie sequence. 0 - transverse unflipped 1 - coronal unflipped 2 - sagitttal unflipped 3 - transverse flipped 4 - coronal flipped 5 - sagitttal flipped

UNKNOWN_ORIENT - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Unknown orientation.

UNKNOWN_ORIENT - Static variable in class gov.nih.mipav.model.file.FileInfoSPM

The data_history substructure is not required, but the orient element is used to indicate individual slice orientation and determines whetther the SPM Movie program will attempt to flip the images before displaying a movie sequence. 0 - transverse unflipped 1 - coronal unflipped 2 - sagitttal unflipped 3 - transverse flipped 4 - coronal flipped 5 - sagitttal flipped

UNKNOWN_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase

String version of units of measurement - unknown.

UNKNOWN_SUBTYPE - Static variable in class gov.nih.mipav.model.structures.VOIBase

available subtypes for VOI

unknownDDType(int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC

hash a group, element pair that is not already present in our list.

unknownIODialog - Variable in class gov.nih.mipav.model.file.FileIO

Dialog to prompt the user to determine the correct file type.

unLinkNodes(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

UNLOCK_PROGRESS_MESSAGE - Static variable in class gov.nih.mipav.view.ViewJProgressBar

With the above variable, unlocks the message updating

unlockAll() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

unlocks all masks

unlockAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

unlock all masks checkbox *

UNLOCKED - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the buffer is unlocked and can be writen to or read from.

unMagButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

buttons *

unMagButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

buttons *

unMagImage() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

un-magnifies image

unMagImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

un-magnifies image

unmagnifyCursor - Static variable in class gov.nih.mipav.view.MipavUtil

DOCUMENT ME!

unMarkAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FaceTmark

unMarkAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

unMarkAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark

UnoptimizedDeepCopy - Class in gov.nih.mipav.view.renderer.WildMagic.AAM

Utility for making deep copies (vs. clone()'s shallow copies) of objects.

UnoptimizedDeepCopy() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.UnoptimizedDeepCopy

unordered_variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

UnorderedSetInt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt

Construct an empty unordered set.

UnorderedSetInt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt

Construct an empty unordered set.

UnorderedSetInt() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt

Construct an empty unordered set.

UnorderedSetInt() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt

Construct an empty unordered set.

UnorderedSetInt(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt

Construct an empty unordered set with the specified maximum quantity and growth values.

UnorderedSetInt(int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt

Construct an empty unordered set with the specified maximum quantity and growth values.

UnorderedSetInt(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt

Construct an empty unordered set with the specified maximum quantity and growth values.

UnorderedSetInt(int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt

Construct an empty unordered set with the specified maximum quantity and growth values.

UnorderedSetInt(AlgorithmBrainExtractor.UnorderedSetInt) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt

Create an unordered set that is a deep copy of the input set.

UnorderedSetInt(AlgorithmObjectExtractor.UnorderedSetInt) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt

Create an unordered set that is a deep copy of the input set.

UnorderedSetInt(ModelTriangleMesh.UnorderedSetInt) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt

Create an unordered set that is a deep copy of the input set.

UnorderedSetInt(BurnBaseView.UnorderedSetInt) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt

Create an unordered set that is a deep copy of the input set.

unOriginal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

824 identifies image as original or unoriginal.

unpackOctave(int[], int[], double[], SIFTImageSimilarity.KeyPoint) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity

unpadStringVal(byte[]) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Unpads a DICOM ASCII string.

unparallelButton - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Rendering unparallel rotaion button.

unread_marker - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

unregisterAllVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage

Unregisters all VOIs from this image model.

unregisterFrame(Frame) - Method in class gov.nih.mipav.model.structures.ModelHistogram

Unregisters the image Frame.

unregisterFrame(Frame) - Method in class gov.nih.mipav.view.ViewUserInterface

Method that unregisters an image frame by removing it from the image frame vector.

unregisterFrame(Frame, boolean) - Method in class gov.nih.mipav.view.ViewUserInterface

Method that unregisters an image frame by removing it from the image frame vector.

unRegisterImage() - Method in class gov.nih.mipav.model.structures.ModelImage

Unregisters the image from the user interface.

unRegisterImage(ModelImage) - Method in class gov.nih.mipav.view.ViewUserInterface

Unregister image model by removing it from the image hashtable.

unRegisterImage(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Unregister image model by removing it from the image hashtable given the key to the hashtable.

unregisterVOI(VOI) - Method in class gov.nih.mipav.model.structures.ModelImage

Method that unregisters an VOI.

unrel - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

unrel_func(double[], double, double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

UNSCALED_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

UNSCALED_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

unselectedBorderColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

DOCUMENT ME!

unselectedBorderColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

unseqToSeq - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

unseqToSeq - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

UnSet(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

UnSetAll(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed

unsharp - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

user-selectable variables used in the unsharping operation. used as interim variables in starting the algorithm op.

UNSHARP_MAX - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

maximum value for unsharpening variables, at 5.0.

UNSHARP_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

minimum value for unsharpening variables, at 0.5.

UNSHARP_WEIGHT_MAX - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

maximum value for unsharpening weighting, at 1.0.

UNSHARP_WEIGHT_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

minimum value for unsharpening weighting, at 0.0.

unsharper - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization

the UnsharpMask algorithm, to hi-pass filter the image.

unsharpMaskAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

DOCUMENT ME!

unsharpWeight - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

unsharpWeightText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

unsharpXtext - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

unsharpYtext - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

unsharpZtext - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

unshrink - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

unshrink - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

UNSIGNED - Static variable in class gov.nih.mipav.model.file.FileMedVision

DOCUMENT ME!

UNSIGNED_BYTE_TYPE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual

DOCUMENT ME!

UNSIGNED_INTEGER - Static variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

UNSIGNED_PIXEL_REP - Static variable in class gov.nih.mipav.model.file.FileInfoDicom

(0028,0103) Pixel Representations

unsignedInt(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR

Converts value to an unsigned integer and returns it as a long.

unsignedShort(int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR

Converts value to an unsigned short and returns it as an integer.

unsortedPathsArrayList - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

arraylist of unsorted path strings to image slices

UNSUPPORTED - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

Data not supported by MIPAV is stored in the tag's value

UnsupportedUnitConversion(String) - Constructor for exception gov.nih.mipav.model.file.FileInfoBase.Unit.UnsupportedUnitConversion

UNSYMMETRIC - gov.nih.mipav.model.algorithms.CeresSolver2.StorageType

untwist(ModelImage, int[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Straightens the worm image based on the input lattice positions.

untwistAnnotations(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

untwistAnnotations(String, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

untwistImage(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Entry point in the lattice-based straightening algorithm.

untwistLattice(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Untwists the lattice and lattice interpolation curves, writing the straightened data to spreadsheet format .csv files and the straightened lattice to a VOI file.

untwistMarkers(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Entry point in the lattice-based straightening algorithm.

untwistMarkers(ModelImage, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

untwistNeuriteCurves(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

untwistPt - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

untwistSampleCount(ModelImage, int[], boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

untwistTest(VolumeImage[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

Untwists the worm image quickly for the preview mode - without saving any images or statistics

untwistTest(VolumeImage[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Untwists the worm image quickly for the preview mode - without saving any images or statistics

untwistTest(VolumeImage[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Untwists the worm image quickly for the preview mode - without saving any images or statistics Straightens the worm image based on the input lattice positions.

untwistTest(Vector3f, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

untwistTestNoBounds(Vector3f, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

unused1 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

MIPAV uses this variable to define the X-axis orientation.

unused2 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

MIPAV uses this variable to define the Y-axis orientation.

unused3 - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

MIPAV uses this variable to define the Z-axis orientation.

unusedCentroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

unusedCentroids - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

unusedColor - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

unusedRect - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

unzftab - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

unZip(ModelTriangleMesh, LinkedList, int, boolean, LinkedList) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic

unZip cuts along the smoothed geodesic path by creating new vertices for each point on the path, and updating the triangles that are connected to the path and that fall on the right of the path to contain the new path vertices.

unZip(TriMesh, LinkedList<Vector4f>, int, boolean, LinkedList<Integer>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM

unZip cuts along the smoothed geodesic path by creating new vertices for each point on the path, and updating the triangles that are connected to the path and that fall on the right of the path to contain the new path vertices.

up - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

UP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

UP - Static variable in class gov.nih.mipav.model.structures.VOIBase

The up arrow key.

UP_EXP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility

upButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

upButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

UpButton(String) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.UpButton

Creates new button with correct icon and given tool tip.

UpButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelCamera.UpButton

Creates new button with correct icon and given tool tip.

UpButton(String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.UpButton

Creates new button with correct icon and given tool tip.

upcoef(boolean, double[], PyWavelets.DiscreteWavelet, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

upcoef(char, double[], PyWavelets.DiscreteWavelet, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

UPCOQ1(int, int, int, int, int, double, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], int[], double[], double[], int, double[], double[], double[], double[][], double[], int, boolean[], boolean[], int[], int[], boolean[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

update() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter

The entry point to updating the PDE solver.

update() - Method in class gov.nih.mipav.model.structures.VOI

update() - Method in class gov.nih.mipav.model.structures.VOIBase

The contour has changed, set the update flags so statistics are recalculated when needed.

update() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

update() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

update() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Causes the labels to be redrawn:.

update() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor

DOCUMENT ME!

update() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor

Update the underlying volume and rerender.

update() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor

Update the underlying volume and rerender.

update() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Redisplay histoLUT.

update() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

Update the representation of the current viewpoint in the Volume Tri-Planar renderer.

update() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

Calls update display on the 2D Histogram class.

update() - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Method to call paint without erasing background this reduces flicker!

update() - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Method to call paint without erasing background this reduces flicker!

update() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Method to call paint without erasing background this reduces flicker!

update() - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Method to call paint without erasing background this reduces flicker!

update() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Redisplays histoLUT.

update() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Redisplay histoLUT.

update(boolean) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

update(boolean) - Method in interface gov.nih.mipav.view.renderer.ViewJComponentVolOpacityListener

update(float[][], float[][], int) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Updates the graph by changing the plot to the desired new 3 functions (RGB).

update(float[], float[], int) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Updates the graph by changing the plot to the desired new function / intensity plot.

update(float, float, int, int) - Method in class gov.nih.mipav.model.structures.DijkstraCostItem

Mark this node as being visited along the minimum cost path if not already done so, but only if the point has not been marked as having its distance finalized.

update(int, float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator

If an edge weight changes for an edge whose heap element is interior to the heap tree, the heap must be updated.

update(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df

update(LseMinHeap.Record, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseMinHeap

The value of a heap record must be modified through this function call.

update(Observable, Object) - Method in interface gov.nih.mipav.model.util.Observer

This method was called whenever the observed object is changed.

update(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointerUpdater

update(Graphics) - Method in class gov.nih.mipav.view.ColorWheel

Calls paint without erasing background - this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Override for Canvas3D method which uses the paint callback to track when it is possible to render into the canvas but makes sure that the default Toolkit's graphics state is synchronized just in case the window system has buffered graphics events.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentAnimate

Method to call paint without erasing background this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip

Method to call paint without erasing background this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentBase

Calls paint without erasing background - this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM

Method to call paint without erasing background this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Method to call paint without erasing background this reduces flicker!

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraph

Calls paint.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentGraphAxes

Calls paint.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentLUT

Calls paintComponent - reduces flicker.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentLUTTable

Calls paintComponent - reduces flicker.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Calls paintComponent - reduces flicker.

update(Graphics) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Calls paint instead of erasing.

update(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

update(ColorRGBA) - Method in class gov.nih.mipav.model.structures.VOIBase

Set the color of this contour.

update(ColorRGBA) - Method in class gov.nih.mipav.model.structures.VOIText

update(ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Set the color of the VolumeVOI object.

update(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIBase

The contour has been translated, this function translates the geometric center and bounding-box so they don't need to be recalculated.

Update() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

Update(CeresSolver.LinearOperator, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Preconditioner

Update(CeresSolver.LinearOperator, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TypedPreconditioner

Update(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize

function used to update e.g. interface

Update(CDVector) - Method in interface gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeFuncBase

function used to update e.g. interface

Update(Vector<Double>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian

Update(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

update_alpha(double, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_alpha_status(int) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

update_alpha_status(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

update_box(libjpeg.jpeg_decompress_struct, libjpeg.box) - Method in class gov.nih.mipav.model.file.libjpeg

update_direct_pgd(Matrix, Matrix, Matrix, Matrix, Matrix, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_exp(Matrix, Matrix, Matrix, Matrix, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_exp_lambdak(double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_exp_tau(double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_gradient(SIFT.VlSiftFilt) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

update_lambdak(double[], double[], Matrix, Matrix, int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_point(NelderMead.simplex_t, NelderMead.point_t, double, NelderMead.point_t) - Method in class gov.nih.mipav.model.algorithms.NelderMead

update_saturation_mask - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur

update_state_every_iteration - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions

update_state_every_iteration - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

update_tau(double[], double[], NonnegativeMatrixFactorization.opt, Matrix, Matrix, Matrix, Matrix, Matrix, int) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_U(Matrix, Matrix, Matrix, Matrix, Matrix, Matrix, double[], double[], int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_V(Matrix, Matrix, Matrix, Matrix, Matrix, Matrix, double[], double[], int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update_with_SC(double[], Matrix, String, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

update2(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Compute the coefficient of the surface normal for the update of the mesh vertex V[i] in the SNormal[i] direction.

update2(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Compute the coefficient of the surface normal for the update of the mesh vertex V[i] in the SNormal[i] direction.

update2(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Compute the coefficient of the surface normal for the update of the mesh vertex V[i] in the SNormal[i] direction.

update2(int, float[], float, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Compute the coefficient of the surface normal for the update of the mesh vertex V[i] in the SNormal[i] direction.

update3(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

Compute the coefficient of the vertex normal for the update of the mesh vertex V[i] in the VNormal[i] direction.

update3(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

Compute the coefficient of the vertex normal for the update of the mesh vertex V[i] in the VNormal[i] direction.

update3DTriplanar(ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's update method to redraw the screen.

update4D() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Go to the next 3D volume sub-image for the 4D animation.

update4D(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Updates the current time slice.

update4D(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

update4D(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

update4DVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

update4DVOIs(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

updateABBlend() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

update blending between images A/B.

updateActive() - Method in class gov.nih.mipav.model.structures.VOI

updateAnnotation(VOIText) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateAnnotation(VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateAnnotationListeners() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Updates the list of listeners that the annotations have changed.

updateBiasFieldEstimate(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

UpdateBlockDiagonalEtE(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView

UpdateBlockDiagonalFtF(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.PartitionedMatrixView

updateBoneBG(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Update the yellow sphere's tranlation component with the given x, y, z coordinates.

updateBorderColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the color of the image borders.

updateBorderSize(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the image border size and then updates light box.

updateBoundingCube - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

updateBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener

updateBoxInput() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener

updateBoxSlicePos(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Update the X, Y, Z box frame positions.

updateBoxSlices() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Sets new frame around slice x based on the new position.

updateBulbs(int) - Method in class gov.nih.mipav.view.ViewTableModel

Updates the bulbs.

updateBurnList(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Updates the burn name list's selected element.

updateButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

continue update button.

updateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

continue update button.

updateCamera() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

Update the camera location and view direction.

UpdateCanonicalViewAssignments(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering

updateCenter(Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

updateCenterOnDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

updateCenterXY(float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

updateCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram

enables the user to set updating the display in real-time or only on mouse-release

updateCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

updateCheckBoxA - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

updateCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

updateCheckBoxB - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

DOCUMENT ME!

updateClipPlanesEqn() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Upadate six clipping planes' plane equation.

updateClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Update clipping planes.

updateClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around arbitrary clip plane slice based on the new position.

updateClipSliceAwithRotate(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Update arbitrary clip plane's transform.

updateClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice -z based on the new position.

updateClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice -z based on the new position.

updateClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice x based on the new position.

updateClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice -x based on the new position.

updateClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice y based on the new position.

updateClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice -y based on the new position.

updateClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice z based on the new position.

updateClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Sets new frame around clip plane slice -z based on the new position.

UpdateColor() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Updates the color in the GLSL shader program used to render the ClassificationWidget.

updateColorButton(float[], float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

updateColorButton(float[], float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

updateColors() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

Helper method to update the colors if the color scheme is changed.

updateComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

updateComponentLUT() - Method in interface gov.nih.mipav.view.HistoLUTParent

Redraw the componentLUT.

updateComponentLUT() - Method in class gov.nih.mipav.view.JPanelHistogram

updateComponentLUT() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

update the LUT and images.

updateComponentLUT() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Placeholder.

updateComponentLUT() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Placeholder.

updateComponentLUT() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Redraw the componentLUT.

updateComponentLUT() - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Placeholder.

updateContour(VOIContour, VOI, String[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

updateContourPane(VOIBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

updateControlPointSamples(int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df

Update the registered source image and the computed error as a result of making changes to a single control point.

updateControlPointSamples(int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df

Update the registered source image and the computed error as a result of making changes to a single control point.

updateCRC(int) - Method in class gov.nih.mipav.model.file.CRC

updateCrop(int, Vector2f) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Updates the crop bounding volume when a point on the crop bounding box is dragged with the mouse.

updateCrosshairPosition(int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Changes the crosshair coordinate (screen coordinate) that this component should display.

updateCrossSection(boolean, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateCrossSection(boolean, boolean, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateCubicTransform(double[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Update the transform3D for the cubic.

updateCubicTransform(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Update the transform3D for the cubic.

updateCubicTransform(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Update the transform3D for the cubic.

updateCurrentColorWheel() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

update current color wheel

updateCurrentColorWheel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

update current color wheel

updateCurrentGroup() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

Updates the number of fiber bundle tract groups.

updateCursor(float, float, int) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT

Update the cursor position when mouse slider is moved.

updateCursorXPos(float) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Update the cursor position when mouse slider is moved.

updateCursorXPos(float, float, int) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT

Update the cursor position when mouse slider is moved.

updateCurveListeners() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateData() - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Causes new data to be loaded from the ModelImage into the textures and redisplayed on the texture-mapped polygon:

updateData() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Called when the underlying data has changed, due to sculpting.

updateData() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Called when the underlying data has changed, due to sculpting.

updateData() - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

updateData() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.

updateData() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Causes the VolumeShader to update the copy of the ModelImage on the GPU.

updateData() - Method in class gov.nih.mipav.view.ViewJFrameImage

updateData() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

updateData() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

updateData() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

updateData(Geometry) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

This method is required for an implementor of the GeometryUpdater interface.

UpdateData(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Update the image data.

UpdateData(ModelImage, int, ModelImage, GraphicsImage, Texture, String, boolean, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

When a ModelImage changes on the CPU, this function is used to update the ModelImage data on the CPU.

UpdateData(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Changes the underlying image data and LUT.

UpdateData(ModelSimpleImage, String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Creates a new GraphicsImage for the input ModelSimpleImage.

updateDefField(int[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

updateDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Method for updating the GUI after the algorithm has completed, should not be called when scripting.

updateDialogRow(VOI, Vector<VOIBase>[], VOIStatisticalProperties, ListModel, int, String[], String[]) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Writes the statistic data for contours

updateDICOM() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop

Update special case DICOM format tags.

updateDirection(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current direction of the light.

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

Causes re-display.

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Updates the ShaderEffect parameters for this widget.

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

updateDisplay() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from VOIManager.

updateDistUnvisited(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState

Update the range of normalized path distances that have not been visited.

updateDistUnvisited(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState

Update the range of normalized path distances that have not been visited.

updateDistUnvisited(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState

Update the range of normalized path distances that have not been visited.

updateDualThreshold(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

Updates the corresponding points for the threshold (transfer line).

updateEllipseModel(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateEndianess() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the image endianess.

updateEntryPointBG(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Update the green sphere's translation component with the given x, y, z coordinate.

updateFFTFileInfo(ModelImage, ModelImage, int) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure.

updateField - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener

updateFileInfo() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins

Updates the fileInfo values for the kWrite image, uses the fileInfo values from kRead.

updateFileInfo(ModelImage, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage, float[], int[], TransMatrix, boolean, AlgorithmBase) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes

Copy important file information to resultant image structure.

updateFileInfo(ModelImage, ModelImage, int[], boolean[], ViewJProgressBar, int, int) - Static method in class gov.nih.mipav.model.structures.ModelImage

updateFileInfoData() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop

Updates important image attributes (start locations, orientation ) for the new cropped file by modifing the fileinfo fo the new ( destination ) image.

updateFileInfoOtherModality(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure.

updateFileInfos(FileInfoAnalyze) - Method in class gov.nih.mipav.model.file.FileInfoAnalyze

Propogates the current file info to another FileInfoAnalyze except for the 3 start locations kept in funused1, funused2, funused3.

updateFileInfos(FileInfoMGH) - Method in class gov.nih.mipav.model.file.FileInfoMGH

Propogates the current file info to another FileInfoMGH.

updateFileInfos(FileInfoNIFTI) - Method in class gov.nih.mipav.model.file.FileInfoNIFTI

Propogates the current file info to another FileInfoNIFTI.

updateFileInfos(FileInfoSiemensText) - Method in class gov.nih.mipav.model.file.FileInfoSiemensText

Propogates the current file info to another FileInfoSiemensText except for the 3 start locations kept in funused1, funused2, funused3.

updateFileInfos(FileInfoSPM) - Method in class gov.nih.mipav.model.file.FileInfoSPM

Propogates the current file info to another FileInfoSPM except for the 3 start locations kept in funused1, funused2, funused3.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.model.file.FileInfoImageXML

Used to propogate all fileInfoXML private variables to other fileinfos.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

Used to propogate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.model.file.FileInfoSurfaceXML

Used to propogate all FileInfoSurfaceXML private variables to other FileInfosSurfaceXML.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.model.file.FileInfoXML

Used to propogate all fileInfoXML private variables to other fileinfos.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceRefXML_J3D

Used to propogate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

Used to propogate all FileInfoSurfaceXML private variables to other FileInfosSurfaceXML.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

updateFileInfos(FileInfoXML) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceRefXML_WM

Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

updateFileInfoStatic(FileInfoBase, ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information between ModelImage structures, assuming all slices have same properties (uses only the first slice from the source).

updateFileInfoStatic(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure.

updateFileName(String) - Method in class gov.nih.mipav.model.structures.ModelImage

Give the image a new image name, updates frame (if not null), and file infos.

updateFileTypeInfo(ModelImage, int) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure, including data type.

updateFileTypeInfo(ModelImage, ModelImage, int) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase

Copy important file information to resultant image structure, including data type.

updateFittedFunctions() - Method in class gov.nih.mipav.view.ViewJFrameGraph

Deprecated.
If data were changed, this could be useful to refit data without pressing a new button, but this function is not currently utilized. Will be removed in future version of MIPAV unless a use can be found Updates Fitted Functions to accurately estimate the functions in the graph (Function data may have chaned due to realtime updating, and therefore the fitted functions must be updated).

UpdateFlags - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

UpdateFlags() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags

UpdateFlags.EdgeSorter - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

updateFonts(VOIText) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameImage

Updates the this frame's size the components sizes.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Updates the this frame's size the compnents sizes.

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

updateFrame(float, float) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

updateFrame(float, float, int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage

public void updateFrame(float xZoom, float yZoom, int x, int y) This method is called when the user is zooming in or out.

UpdateFrameCount() - Method in class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Update frame count

UpdateFrameCount() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Update frame count

updateFrames(boolean) - Method in interface gov.nih.mipav.view.HistoLUTParent

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

updateFrames(boolean) - Method in class gov.nih.mipav.view.JPanelHistogram

updateFrames(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Update registration frames.

updateFrames(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Update all of the image frames that display the image this histo lut is for.

updateFrames(boolean, int) - Method in class gov.nih.mipav.view.ViewControlsImage

Calls ModelImage's updateFrames method.

updateFromCoarseOptimization(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

updateFromFile(String) - Method in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

updateGpuUsage() - Method in class gov.nih.mipav.view.ViewUserInterface

This method updates the "whether algorithms will use the GPU" when the relevant button has been pushed in either the preferences pane.

updateGraph(VOIBase, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Called from the VOIManager when the VOIBase that is currently being graphed has changed.

updateGridColor(Color) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the background color of the panel that is in the scrollpane.

updateGridColumn(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method is called when there is a change to the light box column number verifies that the width value is within bounds.

updateGridRow(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method is called when there is a change to the light box row number and then updates light box.

updateGridSpacing(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Set the distance between adjacent images and updates light box. verifies that the width value is within bounds.

updateHelp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer

updateHistograms(VabraVolumeCollection, VabraVolumeCollection, int[]) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

updateHistoLUT(ModelImage, ModelLUT, ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

updateHistoLUT(ModelImage, ModelLUT, ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

updateHistoLUT(ModelImage, ModelLUT, ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

updateHistoLUTFrame() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset

Displays histoLUT frame for a gray scale image.

updateHistoLUTFrame() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Displays histoLUT frame for a gray scale image.

updateHistoLUTFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Deprecated.

updateHistoLUTFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Deprecated.

updateHistoLUTFrame(int, ViewJComponentEditImage) - Method in class gov.nih.mipav.view.ViewJFrameImage

Deprecated.

updateHistoLUTPanels(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Creates or updates the histogram / LUT panel and opacity panels when a new image is loaded.

updateHistoRGB(ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

updateHistoRGB(ModelImage, ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

updateHistoRGBFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Deprecated.

updateHistoRGBFrame(int, ViewJComponentEditImage) - Method in class gov.nih.mipav.view.ViewJFrameImage

Deprecated.

updateImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

updateImage() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

This methods calls the componentImage's update method to redraw the screen.

updateImage(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

updateImage(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This methods calls the componentImage's update method to repaint the screen.

updateImage(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This methods calls the componentImage's update method to repaint the screen.

upDateImage(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

DOCUMENT ME!

upDateImage3D(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

DOCUMENT ME!

updateImageBorder(int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This methods updates the image border for a single slice.

updateImageBorder(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This methods updates the image border for a single slice.

updateImageBorders() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This method updates all the image borders for a page.

updateImageBorders() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method updates all the image borders for a page.

updateImageExtents() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

update image extents

updateImageExtents() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

updateImageExtents() - Method in class gov.nih.mipav.view.JFrameHistogram

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

updateImageExtents.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

updateImageExtents.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

ViewImageUpdateInterface, unused here.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

DOCUMENT ME!

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

(Part of ViewImageUpdateInterface) This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Update image extends from the ModelImage.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

update image extents

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

updateImageExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

updateImageExtents() - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameBase

The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameImage

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

(Part of ViewImageUpdateInterface) This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Do nothing - required by ViewJFrameBase.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Do nothing - required by ViewJFrameBase.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImageExtents() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Do nothing - required by ViewJFrameBase.

updateImageFromRotation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Build a image with the current rotational transformation matrix.

updateImageFromRotation() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Build a image with the current rotational transformation matrix.

updateImageFromRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Build a image with the current rotational transformation matrix.

updateImageModality() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the image modality.

updateImageOrientation() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the image orientation.

updateImageOrigin(TransMatrix) - Method in class gov.nih.mipav.model.structures.ModelImage

Updates the images origin.

updateImages() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

update images

updateImages() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

updateImages() - Method in class gov.nih.mipav.view.JFrameHistogram

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

updateImages.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

updateImages.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

ViewImageUpdateInterface, unused here.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Update images in surface render, raycast render and shearwarp render.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This methods calls the componentImage's update method to repaint the screen.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Update images in surface render, raycast render and shearwarp render.

updateImages() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

updateImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

update images

updateImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

updateImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

updateImages() - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

This methods calls the componentImage's REPAINT method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameImage

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This methods calls the componentImage's update method to repaint the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameRegistration

This methods calls the componentImage's update method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

This methods calls the componentImage's update method to redraw the screen.

updateImages() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

update images

updateImages(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

updateImages(boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

updateImages.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

updateImages.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

ViewImageUpdateInterface, unused here.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

This methods calls corresponding render to update images without LUT changes.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

This methods calls corresponding render to update images without LUT changes.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

update images

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

updateImages(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

updateImages(boolean) - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Calls the componentImage's update method to redraw the screen.

updateImages(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

update images

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.JFrameHistogram

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

updateImages.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis

updateImages.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

updateImages, called when the ModelLUT changes.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

This methods calls corresponding render to update images with LUT changes.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

This methods calls corresponding render to update images with LUT changes.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

update images

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

This methods calls corresponding render to update images with LUT changes.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in interface gov.nih.mipav.view.ViewImageUpdateInterface

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameImage

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

This methods calls the componentImage's update method to redraw the screen.

updateImages(ModelLUT, ModelLUT, boolean, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

This methods calls the componentImage's update method to redraw the screen.

UpdateImages(ModelImage, Texture, GraphicsImage, TransferFunction) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Called when the opacity transfer function changes.

UpdateImages(ModelLUT) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Update the LUT for the ModelImage.

UpdateImages(ModelStorageBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Update the LUT for the ModelImage.

UpdateImages(TransferFunction, int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Update the transfer function for the image iImage.

UpdateImages(Texture, GraphicsImage, ModelLUT) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

When the LUT changes, this function updates the LUT data on the GPU.

UpdateImages2(ModelImage, Texture, GraphicsImage, TransferFunction) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Update the opacity transfer function.

updateImageSelection(int, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Updates the image selection list by toggling the selection of the Z(3rd dimension) plane and the time (4th dimesion) volume.

updateImageSelection(int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Updates the image selection list by toggling the selection of the Z(3rd dimension) plane and the time (4th dimesion) volume.

updateImageSlice(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Updates the Z(3rd dimension) plane and the time (4th dimesion) volume.

updateImageSlice(int, int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Updates the Z(3rd dimension) plane and the time (4th dimesion) volume.

updateImageSubset(ViewJComponentTriImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

DOCUMENT ME!

updateImageSubset(ViewJComponentTriImage) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

DOCUMENT ME!

updateImageSubset(ViewJComponentTriImage) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

DOCUMENT ME!

UpdateImpl(CeresSolver.BlockSparseMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner

UpdateImpl(CeresSolver.BlockSparseMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurJacobiPreconditioner

UpdateImpl(CeresSolver.SparseMatrix, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrixPreconditionerWrapper

UpdateImpl(MatrixType, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TypedPreconditioner

updateIncrement(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the increment between displayed slices and updates the light box.

updateInterpolation() - Method in class gov.nih.mipav.view.JFrameHistogram

updates the interpolation mode for the images.

updateLattice(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Updates the lattice data structures for rendering whenever the user changes the lattice.

updateLattice(boolean, VOIWormAnnotation, VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateLattice(boolean, VOIWormAnnotation, VOIWormAnnotation) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateLatticeListeners() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateLayout() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Changes the layout of the light box (i.e. row or col) 1. reset the layout 2. reset the size of panel and pane 3.

updateLayout() - Method in class gov.nih.mipav.view.ViewJFrameTriImage

This method should be called whenever the layout of the tri-images has changed.

updateLegendColorScheme(ContourPlot.Renderer) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

updateLengthTags(HashMap<Integer, FileInfoDicom.LengthStorageUnit>) - Method in class gov.nih.mipav.model.file.FileInfoDicom

updateLev() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Updates the scene graph after a new list of widgets is added.

updateLevWidgetState() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

updateLevWidgetState(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

updateLevWidgetState(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

updateLevWidgetState(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

updateLevWidgetState(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

updateLevWidgetState(Vector<ClassificationWidget>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

updateLightBoxLocation(String) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Gets the string from the preferences and verifies the upper-left-hand verifies the upper-left-hand corner is within the screen boundaries.

updateLighting() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This method is normally called by JPanelLights when a light bulb property changes.

updateLighting() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This method is normally called by JPanelLights when a light bulb property changes.

updateLighting() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Setup the specified set of lights to use for rendering.

updateLighting(SoftwareLightSet, SoftwareMaterial) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Setup the specified set of lights to use for rendering.

updateLighting(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

Called from JPanelLight.

updateLighting(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

updateLighting(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Called from JPanelLight.

updateLighting(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceMaterialDisplay

Called from JPanelLight.

updateLighting(Light[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

updateLinks() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Updates the lattice data structures on undo/redo.

UpdateLocalParameterizationJacobian() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

updateLowerSliderValues() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Update the lower threshold slider labels and values.

updateLut(ModelLUT, ModelLUT) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Causes the data to be redrawn with new LUT values:

updateLUT(ModelLUT) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

Switching the different types of LUT view invoke this method to update the the LUT view.

updateLUTPositionString(String) - Method in interface gov.nih.mipav.view.HistoLUTParent

Sets the position string in the LUT text field.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.JPanelHistogram

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Sets the position string in the LUT text field.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Placeholder.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Placeholder.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Sets the position string in the LUT text field.

updateLUTPositionString(String) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Placeholder.

updateLUTRecorder() - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Update the LUT recorder table transfer function.

updateLUTRecorder(ModelLUT) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Update the LUT table of LUTRecorder.

updateMagnification(int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Sets the magnification of the images and then updates light box.

updateManager(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateMask() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

updateMatrixBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Refreshes the matrix combo box with the list of available matrices within the image.

updateMatrixFields(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the matrix fields (transform ID, jtextfields).

updateMatrixInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the image with the new Matrix information (for matrix replacement).

updateMemory - Variable in class gov.nih.mipav.view.ViewUserInterface.MemoryUsageUpdater

updateMemoryUsage() - Method in class gov.nih.mipav.view.ViewUserInterface

This method is a callback method.

updateMenubar() - Method in class gov.nih.mipav.view.ViewJFrameImage

This method updates the menubar; ie: after an image has been opened.

updateMenuBar() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin

updateMesh() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

The heart of the segmentation.

updateMesh() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

The heart of the segmentation.

updateMesh() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

The heart of the segmentation.

updateMesh(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM

updateMesh(HashMap, Vector3f[], Vector3f[], UnorderedSetInt[], Vector3f[], Vector3f[], float[], float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

The heart of the segmentation.

updateMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer

updateModifyDialog() - Method in class gov.nih.mipav.view.ViewJFrameGraph

Updates fields of the Modify Graph Dialog which may have changed due to things such as adding/deleting functions.

updateMultiCoreUsage() - Method in class gov.nih.mipav.view.ViewUserInterface

This method updates the "whether multi-core should be used" button when the relevant button has been pushed in either the preferences pane.

updateMultihistoTab(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Update the multi-histogram tab when the MultiHistogram checkbox is checked in the renderMode panel.

updateNeurite(String, String[], ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

updateNeurites() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

updateNode(ScriptTreeNode, String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

***************************************************************************************************** Methods to handle tree behavior********************************************************************************************* ******** updateNode, called when a node text needs to be changed.

updateOpacity(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Not used at the moment.

updateOpacity(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender

Not used at the moment.

updateOpacityOfOthrogPlanes(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Updates the 3 orthogonal 2D texture maps' opacities.

updateOrientation(FlyPathBehavior) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the appropriate controls based on the current settings of the orientation-based information in the FlyPathBehavior instance.

updateOrientation(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the appropriate controls based on the current settings of the orientation-based information in the FlyPathBehavior instance.

updateOrigin - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

DOCUMENT ME!

updateOrigin() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Translate the image origin from image space to patient space (scanner space).

updateOrigin(TransMatrix) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Update origin.

updateOriginCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

updateOriginInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Updates the origin.

updateOriginInfo(FileInfoImageXML[]) - Method in class gov.nih.mipav.model.file.FileImageXML

Updates the start locations.

updateOriginMargins() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Update origin to reflect padding.

updateOriginMargins2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Update origin to reflect padding.

updateorigins(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileMetaImage

Updates the start locations.

updateorigins(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileMGH

Updates the start locations.

updateorigins(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileNIFTI

Updates the start locations.

updateorigins(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileNRRD

Updates the start locations.

updateP(int, float[], float, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

DOCUMENT ME!

updatePagePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Refill the page panel with imagePanelVector.

updatePagingToolbar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Enable or disable the buttons on the paging toolbar and the view menu items based on the current page and the number of pages.

updatePaint - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

updatePaint(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

The purpose of this method is to set the paint bitmap so that it is the same for all 9 images.

updatePaint(BitSet, boolean, boolean) - Method in interface gov.nih.mipav.view.PaintGrowListener

Causes the image to update its paint bit mask and redisplay itself.

updatePaint(BitSet, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Causes the image to update its paint bit mask and redisplay itself.

updatePaintBitmap(boolean, int, int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Updates the image volume's paint bitmap based on the current position of the mouse in the component, called after a mouse action indicates the user wants part of the image either painted or erased.

updatePaintBrushCursor() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Updates the Paint Cursor's BufferedImage with the correct color/opacity.

updatePanel(int, int, int) - Method in class gov.nih.mipav.view.JPanelEditDate

self-verification of panel values, prior to requesting for checkFields.

updatePanelLayout() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Updating frame panel layout.

updateParameters(Matrix4f, Matrix4f, float, float, float[], float[], float, float[], float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.LineMinimizationEffect

updateParent() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

updateParent() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

updatePlanes() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Causes the texture representation of all the surface meshes to be recalculated.

updatePoint(double[], double, Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D

updatePoint(double[], double, Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D

updatePoint(double[], double, Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D

updatePoint(double[], double, Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D

updatePoint(double[], double, Vectornd) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

Store the optimal point and cost to v

updatePointSet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

UpdatePolygon() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

UpdatePolyStructure() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

UpdatePolyStructureToOrig() - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

updatePosition(FlyPathBehavior) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup

Update the appropriate controls based on the current settings of the position-based information in the FlyPathBehavior instance.

updatePosition(FlyPathBehavior_WM) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM

Update the appropriate controls based on the current settings of the position-based information in the FlyPathBehavior instance.

updatePosition(Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Set the probe's translation.

updateProbe(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Updates the slice textures based on the Probe position and rotation angle.

updateProbe(boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Updates the slice textures based on the Probe position and rotation angle.

updateProbeList() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Update probe list.

updateProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Not used now.

updateProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Not used now.

updateProbePos() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

The navigation mode update the probe position in 3D texture volume.

updateProbePos(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Updates the probe world coordinate from the tri-planar view's mouse drag event.

UpdateQuadric(LODMesh.Quadric, LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric

updateQuickList() - Method in class gov.nih.mipav.view.ViewMenuBuilder

Updates the most recently opened images list (called when images are opened etc).

updateR(int, float[], float, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

DOCUMENT ME!

updateRaycastRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Update the raycast based renderer.

updateRaycastRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Update the raycast based renderer.

updateRealTime(boolean) - Method in class gov.nih.mipav.view.JFrameHistogram

Updates the interface behavior when the user choses to update in real-time or on mouse release.

updateRealTime(boolean) - Method in class gov.nih.mipav.view.JPanelHistogram

updateRectangle(int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

updateRegistration(int, float) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasure

Update the specified value in the registered source image.

updateRegistration(int, float) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureCorrelationRatio

Update the specified value in the registered source image.

updateRegistration(int, float) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureLeastSquares

Update the specified value in the registered source image.

updateRegistration(int, float) - Method in class gov.nih.mipav.model.algorithms.registration.RegistrationMeasureNormalizedMutualInformation

Update the specified value in the registered source image.

updateRenderedVolume(ViewJComponentRenderImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor

This sequence causes the m_kVolumeRenderer to rerender the volume data, from the current ModelImage, not the data that is stored in the Renderer.

updateRenderer(Renderer, ModelLUT, TransferFunction, ViewJComponentVolOpacity, int, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData

Update the data for the intensity-based color mapped image.

updateRenderer(Renderer, ModelRGB, JPanelVolumeOpacity, int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData

updateRenderer(Renderer, ModelRGB, JPanelVolOpacityRGB, int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData

Deprecated.

updateResampleStatusImage() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

updateResampleStatusUserSpecified() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

updateResolInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Gives the image new resolutions.

updateResolutionCorrection() - Method in class gov.nih.mipav.view.components.JPanelSigmas

Updates the resolution-corrected z-direction sigma label.

updateResultImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

After the target image with final segmented VOI.

updateRGBIndex - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

updateRGBTA(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Causes the data to be redrawn with new RGBTA values:

updateRGBTB(ModelRGB) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Causes the data to be redrawn with new RGBTA values:

UpdateRhs() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement

UpdateRhs(CeresSolver.Chunk, CeresSolver.BlockSparseMatrix, double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator

updateRotationRedline(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Update the shape of the entry point rotation red line.

updateRow() - Method in class gov.nih.mipav.view.DICOMDisplayer

Makes the row that's written into the next row available.

updateRowsColumns(boolean, int, int) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

This method is called when there is a change to the light box setting for rows, columns, or row_dependency.

updateRowStatistics(VOI, VOIStatisticalProperties, String[], String[], String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Writes general statistics data for any VOI structure given a valid "end" modifier to specify the property being fetched.

updateSamples(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df

Update the registered source image and the computed error but only for the specified range of samples.

updateSamplesMT(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df

updateSamplesST(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df

Update the registered source image and the computed error but only for the specified range of samples.

updateScale(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Called by the volume surface render to update the mouse zoom transform.

updateScene(Matrix3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

updateSceneNodePoint(String, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Currently only being used to update the picking point

UpdateSceneRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Updates the displayed objects based on any user mouse rotation.

UpdateSceneRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

UpdateSceneRotation() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

updateScript(String) - Method in interface gov.nih.mipav.model.scripting.ScriptRecordingListener

Alerts the listener to a change in the text of the script currently being recorded.

updateScript(String) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Alerts the listener to a change in the text of the script currently being recorded.

updateScript(String) - Method in class gov.nih.mipav.view.ViewUserInterface

Do nothing - required by ScriptRecordingListener interface.

updateScripts(String) - Method in class gov.nih.mipav.view.ViewControlsImage

Invokes the toolbar builder to update the scripts combo box based on the new script directory.

updateScripts(String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder

Method to update the list of scripts in the scripting toolbar based on the directory name provided.

updateSeamCount() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateSelected() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

Updates the VOI displaying which point (lattice or annotation) is currently selected when the selection changes.

updateSelected(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

updateSelected(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

updateSelectedPoint(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateSelectedPoint(Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Update the shininess from the JPanelLights.

updateShininess(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Update the shininess from the JPanelLights.

updateSkip() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer

After the compositing step in resampleSingle, the intensity (for gray scale) or alpha value (for color) might become its maximum value.

updateSlice(int) - Method in class gov.nih.mipav.view.PatientSlice

updates the slice value when the wheel is moved or the page_up, page_down keys are pressed.

updateSlice(int) - Method in class gov.nih.mipav.view.ViewJComponentTriImage

updates the slice value when the wheel is moved or the page_up, page_down keys are pressed.

UpdateSlice(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

updateSliceCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior

updateSliceData() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.

updateSlicesCenter(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Update the bottom 3 planar view center

updateSlicing(Vector3d) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender

Automatically call selectSlices with the correct axis (X, Y, or Z) and increasing/decreasing coordinate order flag based on the specified view direction vector such that the slices are rendered back to front for the plane which is most parallel to the view plane.

updateSlider() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

updateSlider(ViewJComponentVolOpacityBase) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity

Adjust the opacity slider for the minor opacity changes.

updateSlider(ViewJComponentVolOpacityBase) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Adjust the opacity slider for the minor opacity changes.

updateSlider(ViewJComponentVolOpacityBase) - Method in interface gov.nih.mipav.view.renderer.ViewJComponentVolOpacityListener

updateSliders(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Update the window, level sliders from CTPreset dialog.

updateSliderValues() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Update the slider labels around the current intensityValue.

updateSoftwareLights() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Get the current SoftwareLight instances from each of the GeneralLight instances -- for the world- and model-based lights.

updateSphere(TriMesh, float, float, float, ColorRGBA) - Static method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

updateSplineControlPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

updateStartLocations(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FileAnalyze

Updates the start locations.

updateStartLocations(FileInfoBase[]) - Method in class gov.nih.mipav.model.file.FilePARREC

Updates the start locations.

updateStatLog() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Method for updating the table after the algorithm has completed.

updateStereo() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

Reads the left and right-eye buffers from the left and right-eye canvases and blends them into the Red-Cyan Anaglyph stereo buffer, which is then texture-mapped on the a polygon and rendered in the stereo canvas.

updateSurfaceNameList(int[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Called when surfaces are added or removed from the surfaceVector SurfaceAttributes list.

updateSurfaceRender(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Updates the SurfaceRenderer.

updateSurfaceTextureImage(BitSet, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

updateSurfaceTextureImage.

updateSurRenderWinlevel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Hack.

updateTable() - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor

Refreshes the table by loading all shortcuts from ViewUserInterface's shortcut hashtable.

updateTableSelection(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

updateTableSelection(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

updateTableSelection(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

updateTalairachInfo() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

updates the talairach transform info.

updateTarget(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight

Set the current target of the light.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

After auto segmentation, update the target image with corresponding segmented VOIs.

updateTargetImage(int, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

Copy the 2D slice segmented VOI to target image silce.

updateTargetLabels() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Update the labels which show info about the current target surface.

updateTargetList() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Update target surface list from the JPanelSurface control dialog.

updateText() - Method in class gov.nih.mipav.model.structures.VOIText

updateText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

UpdateTextAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction

updateTexture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Updaes the ImageComponent3D data if the texture display is turned on.

updateTextureVolumeRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Determine the current viewing transformation and pass it to the texture volume renderer so that it can update itself.

updateTextureVolumeRender() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Determine the current viewing transformation and pass it to the texture volume renderer so that it can update itself.

updateThresholdFields(float, float) - Method in interface gov.nih.mipav.view.HistoLUTParent

Method to update the threshold text fields when the lower or upper threshold changes.

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Method to update the threshold text fields when the lower or upper threshold changes.

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB

Deprecated.

Placeholder.

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Method to update the threshold text fields when the lower or upper threshold changes.

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT

Method to update the threshold text fields when the lower or upper threshold changes.

updateThresholdFields(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Method to update the threshold text fields when the lower or upper threshold changes.

updateTitle() - Method in class gov.nih.mipav.view.ViewFileChooserBase

Displays the current directory path in the title bar of JFileChooser.

updateToolbarLayout() - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Updates the toolbar panel's layout based on the row dependcies.

updateTransform() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Tells the mouse dialog that the transform has changed.

updateTransform(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Tells the mouse dialog that the transform has changed.

updateTransform(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Update transform from the surface volume render.

updateTransformInfo(TransMatrix) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

Applies the values in the JTabbedPane "Transform" to the transform matrix in the image.

updateTransformMatrix(FileInfoPARREC, ModelImage) - Method in class gov.nih.mipav.model.file.FilePARREC

updateTransformMatrix(ModelImage) - Method in class gov.nih.mipav.model.file.FileSpar

updateTransFunc(TransferFunction) - Method in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Load preset transfer function for the image.

updateTransFunc(VOIContour) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

updateTranslate(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Called by the surface volume render to update the tranlation behavior.

updateTreatmentPanel(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Update the treatment panel components to correpsond to the currently selected target surface.

updateTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

updateTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

updateTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

updateTree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

updateTree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

updateTree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

updateUI() - Method in class gov.nih.mipav.view.JScrollMenu

updateUnitsOfMeasure(FileInfoAnalyze, ModelImage) - Method in class gov.nih.mipav.model.file.FileAnalyze

Updates the units of Measure in the file info based on the voxUnits from an Analyze Header.

updateUnitsOfMeasure(FileInfoPARREC, ModelImage) - Method in class gov.nih.mipav.model.file.FilePARREC

Updates the units of Measure in the file info based on the voxUnits from an Analyze Header.

updateUnitsOfMeasure(FileInfoSPM) - Method in class gov.nih.mipav.model.file.FileSPM

updates the units of Measure in the file info based on the voxUnits from an SPM Header.

updateUnitsOfMeasure(FileInfoSPM, ModelImage) - Method in class gov.nih.mipav.model.file.FileSPM

updates the units of Measure in the file info based on the voxUnits from an SPM Header.

updateUpperSliderValues() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Update the upper threshold slider labels and values.

updateValImmed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

updateValue(int) - Method in class gov.nih.mipav.view.JPanelProgressBar

Used to set the present value of the progress bar.

updateValue(int) - Method in class gov.nih.mipav.view.ViewJProgressBar

Use this method if you are not running in a separate thread, or, you have already set the value of separateThread through the setSeparateThread method.

updateValue(int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer

Updates this containers components based on the input value

updateValue(int, boolean) - Method in class gov.nih.mipav.view.JPanelProgressBar

DOCUMENT ME!

updateValue(int, boolean) - Method in interface gov.nih.mipav.view.ProgressBarInterface

public void updateValue( int value );

updateValue(int, boolean) - Method in class gov.nih.mipav.view.ViewJProgressBar

Used to set the present value of the progress bar.

updateValue(int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti

Update the specific algorithm's progress display

updateValueImmed(int) - Method in class gov.nih.mipav.view.JPanelProgressBar

Used to set the present value of the progress bar.

updateValueImmed(int) - Method in class gov.nih.mipav.view.ViewJProgressBar

Used to set the present value of the progress bar.

updateVasculatureBG(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Update the blue sphere's translation component with the given x, y, z coordinate.

updateView(int, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

Call by the surface volume render to update transform changes.

updateView(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Automatically call selectSlices with the correct axis (X, Y, or Z) and increasing/decreasing coordinate order flag based on the specified view direction vector such that the slices are rendered back to front for the plane which is most parallel to the view plane.

updateView(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender

Automatically call selectSlices with the correct axis (X, Y, or Z) and increasing/decreasing coordinate order flag based on the specified view direction vector such that the slices are rendered back to front for the plane which is most parallel to the view plane.

updateViewScreenScale(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

This function calculates the scale factor for zooming in parallel projection.

updateViewScreenScale(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

This function calculates the scale factor for zooming in parallel projection.

updateViewScreenScale(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This function calculates the scale factor for zooming in parallel projection.

updateViewScreenScale(Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This function calculates the scale factor for zooming in parallel projection.

updateVOI(VOI, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

Updates the dialog based on the VOI passed in.

updateVOI(VOI, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

Updates the dialog based on the VOI passed in.

UpdateVOIEvent - Class in gov.nih.mipav.model.structures

presents an event to regard a changed VOI.

UpdateVOIEvent(Object) - Constructor for class gov.nih.mipav.model.structures.UpdateVOIEvent

A basic updateVOIevent.

UpdateVOIEvent(Object, VOI) - Constructor for class gov.nih.mipav.model.structures.UpdateVOIEvent

Creates a new UpdateVOIEvent object.

UpdateVOIEvent(Object, VOI, VOIBase) - Constructor for class gov.nih.mipav.model.structures.UpdateVOIEvent

Creates a new UpdateVOIEvent object.

updateVOIPanel(VOI, ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Updates the dialog based on the VOI passed in.

updateVOIs() - Method in class gov.nih.mipav.model.structures.ModelImage

updateVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

updateVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

updateVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

UpdateVOISelectionListener - Interface in gov.nih.mipav.model.structures

UpdateVOISelectionListener permits objects to listen for updates to a VOI.

updateVolume(ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

This methods calls the componentImage's update method to redraw the screen.

updateVolume(ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

This methods calls the componentImage's update method to redraw the screen.

updateVolumeRenderClipPlane() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Update the volume render's clip plane with all new positions.

updateVolumeRenderer() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend

updateVolumeTexture(BitSet, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Called from SurfacePaint.

updateVoxelSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

updateWinlevel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Update the window level flag, call by the plane renderer.

updateWinLevel(float, float, boolean, ModelStorageBase, ModelImage) - Method in class gov.nih.mipav.view.WindowLevel

updateWinLevel updates the window-level for the input lookup table based on two normalized parameters (fX, fY).

updateWinLevel(int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage

Update the window level sliders from the CT preset dialog.

updateWinLevelGray(ModelLUT, ModelImage, float[], float[]) - Method in class gov.nih.mipav.view.WindowLevel

updateWinLevelGray, updates the ModelLUT with the new transfer function.

updateWinLevelRGB(ModelRGB, ModelImage, float[], float[]) - Method in class gov.nih.mipav.view.WindowLevel

updateWinLevelRGB, updates the ModelRGB with the new transfer functions.

updateX(int, float[], float, float[]) - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjSparseMatrix

DOCUMENT ME!

updateXMLLinkedFile() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo

method to update the xml file infos with a new linked image path.

UpdateYSpaceAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction

updatingFiberTrack - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI

upDirButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

DOCUMENT ME!

upheap(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue

UPJAC1(int, int, int, int[], int[], int[], double[], double[], double[], double[], int, int, int[], int[], int[], int[], double[], double[], double[], double[][], boolean[], boolean[], double, int[], double[], double[], double[], int[], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

uplo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

upmethod - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

upper - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2

DOCUMENT ME!

upper - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3

DOCUMENT ME!

upper - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

upper - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel

upper - Variable in class gov.nih.mipav.model.algorithms.Integration2

DOCUMENT ME!

upper - Variable in class gov.nih.mipav.model.algorithms.Integration2EP

DOCUMENT ME!

upper - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

upper - Variable in class gov.nih.mipav.model.algorithms.LsqFit

upper - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

upper_bound - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet

UPPER_BOUND - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

UPPER_BOUND - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

upper_bound_n - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo

upper_bound_n - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo

upper_bound_p - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver.SolutionInfo

upper_bound_p - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver.SolutionInfo

upper_bounds_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

UPPER_LEFT - Static variable in class gov.nih.mipav.model.structures.VOIBase

UPPER_MIDDLE - Static variable in class gov.nih.mipav.model.structures.VOIBase

UPPER_RIGHT - Static variable in class gov.nih.mipav.model.structures.VOIBase

UPPER_TRIANGULAR - gov.nih.mipav.model.algorithms.CeresSolver2.StorageType

UpperBoundForParameter(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

upperDeltaSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Slider which adjusts the upper bound of the region grow.

upperDeltaTF - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature

Text field containing the upper bound of the region grow.

upperIncompleteGamma - Variable in class gov.nih.mipav.model.algorithms.Gamma

upperLeftCorner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess

upperLeftCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

Whether, during "smart-thresholding", noise should be calculated from a given corner

upperLeftCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

upperLevel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

upperLimit - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

held for switching between states of the exclusion.

upperLimitB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

upperLimitG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

upperLimitR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector

upperMid - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upperMidB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upperMidG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upperMidR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upperRightCorner - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess

upperRightCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod

upperRightCorner - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

upperThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

handling of intensity threshold.

upperThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT

DOCUMENT ME!

UpperTriangularSetUp(Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

upsample - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_decompress_parameters

upsample - Variable in class gov.nih.mipav.model.file.FileJPEG2000

upsample - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge

upsample - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample

upsample(double[][], int[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion

upsample_image_components(FileJPEG2000.opj_image_t) - Method in class gov.nih.mipav.model.file.FileJPEG2000

upsample_jdmerge - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

upsample_jdsample - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

upsample2D(int, int, double[], int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

upsample3D(int, int, int, double[], int, int, int, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

upsampling_convolution_full(double[], int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

upsampling_convolution_valid_sf(double[], int, double[], int, double[], int, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

upsampling_convolution_valid_sf_periodization(double[], int, double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

upscale - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

upscale - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Upscaling factor

upSetFromField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSetFromFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSetFromFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSetFromFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

upSlice() - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Increments the current slice in local coordinates and returns the new position in the view-independent file coordinates.

upSlice() - Method in class gov.nih.mipav.view.ViewJComponentTriImage

Increments the current slice in local coordinates and returns the new position in the view-independent file coordinates.

upSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderField - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderG - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upSliderR - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

upVectors - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

uqi() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

UR - gov.nih.mipav.model.file.FileDicomTagInfo.VR

url - Variable in class gov.nih.mipav.model.file.FileInfoJSON

urlEncode(String) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.StringUtil

urparm - Variable in class gov.nih.mipav.model.algorithms.NL2sol

US - gov.nih.mipav.model.file.FileDicomTagInfo.VR

usableComponent - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

Usage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode

Get the console mode usage

USCRAM(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

use_approximate_eigenvalue_bfgs_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions

use_approximate_eigenvalue_bfgs_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionOptions

use_approximate_eigenvalue_bfgs_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

use_approximate_eigenvalue_bfgs_scaling - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

use_approximate_eigenvalue_scaling_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BFGS

use_approximate_eigenvalue_scaling_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian

use_explicit_schur_complement - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions

use_explicit_schur_complement - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

use_inner_iterations - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

use_kuang_code - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

use_merged_upsample(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg

use_nonmonotonic_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions

use_nonmonotonic_steps - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

USE_OPENCL - Static variable in class gov.nih.mipav.view.dialogs.AlgorithmParameters

Label used for boolean param indicating whether the algorithm should try to use OpenCL.

use_postordering - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions

use_postordering - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions

use_postordering - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

use_seminmf_init - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

use3D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

useAAinFallback - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

UseAlloc - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

UseAlloc - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

UseAllocator() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

UseAllocator() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix

useAltTime - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

useAltTimeTag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

useAnalyticJacobian - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel

useAnalyticJacobian - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel

useAnalyticJacobian - Variable in class gov.nih.mipav.model.algorithms.NL2sol

useB1Map - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

useBBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents

useBComp - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

useBilinearOrientationAssigment - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim

For color images only.

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

If true, blue image is selected as of the two images for calculating histogram.

useBlue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

useBlue - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

useBlueOnly - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

useBlueThreshold - Variable in class gov.nih.mipav.view.PatientSlice

Flag indicating whether to threshold the blue color channel:.

useBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.fittingTask

useBounds - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

useBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

useBSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D

Flag to indicate to use B-Spline registration or OAR registration

useBSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast

Flag to indicate to use B-Spline registration or OAR registration

useCenterOfMass - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

By default true, parameter indicates that the center position of the brain should be calculated using JDialogExtractBrain.computeCenter(ModelImage, int, boolean)

useCenterOfMassCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

By default checked, yields a true value for useCenterOfMass

useChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

tells whether or not to use the channels (red=0, green=1, blue=2).

useChannels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB

Which channels to use (0 = red, 1 = green, 2 = blue).

useCIELab - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE

useCIELab - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

useCIELab - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

useCIELab - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

useColorHistogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

useColorHistogram - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

useColorHistogram - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

UseColorMap - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

turns the widget color map on/off in the GLSL shader code.

useComplex - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

DOCUMENT ME!

useComplex - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

DOCUMENT ME!

useContours - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

useConversion - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution

when true, the sigma values are multiplied by: 1.0 / (2*Math.sqrt(2*Math.log(2))) before the gaussian is generated.

UseConvexHull() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Returns true of the convex hull determines the shape extent.

UseConvexHull(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Allows warping inside the convex hull (default=off).

useCrispEdgesForSVG - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Triangles

used - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig

used - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.SubSig

used - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t

used - Variable in class gov.nih.mipav.view.ViewJFrameMemory

test notification of memory used.

usedBit - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting

usedColor - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

usedCurve - Variable in class gov.nih.mipav.model.structures.UpdateVOIEvent

DOCUMENT ME!

useDefaultRanges - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

usedFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

usedMemory - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor

DOCUMENT ME!

useDotRatios - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

usedRect - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

usedSliceThickness - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

useElementsDrawCall() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.Glyph

useELSUNC - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

useGBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents

useGComp - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim

For color images only.

useGreen - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

If true, green image is selected as of the two images for calculating histogram.

useGreen - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

useGreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

useGreenOnly - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

useGreenThreshold - Variable in class gov.nih.mipav.view.PatientSlice

Flag indicating whether to threshold the green color channel:.

useGZIP - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

useHardThresholding - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess

useHardThresholding - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

useHighlight(boolean) - Method in class gov.nih.mipav.view.ViewJComponentEditImage

Sets this component to paint the "on top" high-light.

UseIdentityTransformation() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Makes the object use an identity basis instead of PCA basis, i.e.

useImageA() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

useImageB() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

useIncorrectAcpcXDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo

Whether to use the old, incorrect ACPC X dim calculation, which overcounted by one (used in backwards compatibility for Dr.

useIncorrectAcpcXDim - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

Flag used to force acpc x dim to old (incorrect) value of 192 instead of fixed value calculation (which results in x dim of 191).

UseIndex - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData

useInfNew - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

if true use cerebellum-adjusted static variable.

useJPWL - Variable in class gov.nih.mipav.model.file.FileJPEG2000

useJTEM - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase

When true, JTEM Powell.search is used, otherwise, JTEM BrentOnline.search is used.

useLatticeMarkers - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

useLog - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

useLog - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

useLUT - Variable in class gov.nih.mipav.model.file.FileHistoLUT

Whether to use the LUT or the RGB model.

useMarker - Variable in class gov.nih.mipav.model.structures.VOIText

If this is set to true, a draggable arrow will be displayed

useMarker() - Method in class gov.nih.mipav.model.structures.VOIText

gets whether or not the arrow should be drawn

useMarkerBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation

DOCUMENT ME!

useMask - Variable in class gov.nih.mipav.model.structures.ModelImage

useMask() - Method in class gov.nih.mipav.model.structures.ModelImage

useMask(boolean) - Method in class gov.nih.mipav.model.structures.ModelImage

useMaxLikelihood - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR

DOCUMENT ME!

useMedian - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

useMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

DOCUMENT ME!

useMicroscopeSettings - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

When true the lens NA, wavelength, and refractive index are used in the deconvolution process

useMJ2 - Variable in class gov.nih.mipav.model.file.FileJPEG2000

useModImg - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice

useMouseRotationCutoffs - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

useMouseTranslationCutoffs - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

useMultipleReceivers - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

useNewCompression - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

useNoiseStdConstructor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

useNoiseStdConstructor - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

useNumerical - Variable in class gov.nih.mipav.model.algorithms.LsqFit

useOCL - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

useOCL - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

useOCL - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

DOCUMENT ME!

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

Flag indicating whether to use OpenCL processing.

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Flag indicating whether to use OpenCL processing.

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Flag indicating whether to use OpenCL processing.

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Flag indicating whether to use OpenCL processing.

useOCL - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

useOCL(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

Turns on/off using OpenCL to compute the FFT.

useOCL(boolean) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

Turns on/off using OpenCL to compute the FFT.

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

Indicates whether user wants openCL for processing.

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

Indicates whether user wants openCL for processing.

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

Indicates whether user wants openCL for processing.

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

Indicates whether user wants openCL for processing.

useOCLCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion

UseOtherImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

UseOtherLUT - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

useOutsideReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

useOutsideReferenceSlice - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

useOutsideReferenceSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

useOutsideReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

useOutsideReferenceVolume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

useOutsideReferenceVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

usePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

usePointWeights - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter

usePreferencesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

DOCUMENT ME!

useProgressBar - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter

useProgressBar - Variable in class gov.nih.mipav.model.algorithms.filters.PhasePreservingDenoising

useProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

useProgressBar - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

user - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges

Copyright (c) 2009, Yue Wu All rights reserved.

user - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry

the user name

user - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

USER - gov.nih.mipav.model.structures.jama.SuperLU.LU_space_t

user_bitmap - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

292 Bitmap defining user Cvs.

USER_BRUSHES - Static variable in class gov.nih.mipav.view.ViewToolBarBuilder

DOCUMENT ME!

USER_DEFINED - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

USER_FAILURE - gov.nih.mipav.model.algorithms.CeresSolver.TerminationType

USER_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient

USER_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation

user_parameter_block - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback

user_parameters_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverStateUpdatingCallback

user_state() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

user_state_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock

USER_SUCCESS - gov.nih.mipav.model.algorithms.CeresSolver.TerminationType

user0 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user0 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user0 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

406 User Variable 0.

USER0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

USER0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

user1 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user1 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

410 User Variable 1.

USER1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

user10 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

446 User Variable 10.

user11 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

450 User Variable 11.

user12 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

454 User Variable 12.

user13 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

458 User Variable 13.

user14 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

462 User Variable 14.

user15 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

466 User Variable 15.

user16 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

470 User Variable 16.

user17 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

474 User Variable 17.

user18 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

478 User Variable 18.

user19 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

482 User Variable 19.

user2 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user2 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

414 User Variable 2.

USER2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

user20 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

486 User Variable 20.

user21 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

490 User Variable 21.

user22 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

494 User Variable 22.

user23n - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

588 User Variable 23.

user24 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

502 Concat Sat Type Flag.

user24n - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

592 User Variable 24.

user25 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

878 User Variable 25.

user26 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

882 User Variable 26.

user27 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

886 User Variable 27.

user28 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

890 User Variable 28.

user29 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

894 User Variable 29.

user3 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user3 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user3 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

418 User Variable 3.

USER3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

user30 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

898 User Variable 30.

user31 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

902 User Variable 31.

user32 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

906 User Variable 32.

user33 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

910 User Variable 33.

user34 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

914 User Variable 34.

user35 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

918 User Variable 35.

user36 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

922 User Variable 36.

user37 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

926 User Variable 37.

user38 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

930 User Variable 38.

user39 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

934 User Variable 39.

user4 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user4 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user4 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

422 User Variable 4.

user40 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

938 User Variable 40.

user41 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

942 User Variable 41.

user42 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

946 User Variable 42.

user43 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

950 User Variable 43.

user44 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

954 User Variable 44.

user45 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

958 User Variable 45.

user46 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

962 User Variable 46.

user47 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

966 User Variable 47.

user48 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

970 User variable 48.

user5 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user5 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user5 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

426 User Variable 5.

user6 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user6 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user6 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

430 User Variable 6.

user7 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user7 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user7 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

434 User Variable 7.

user8 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user8 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user8 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

438 User Variable 8.

user9 - Variable in class gov.nih.mipav.model.file.FileGESigna4X

user9 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

user9 - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

442 User Variable 9.

userAddress - Variable in class gov.nih.mipav.model.file.FileInfoZVI

useRange - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes

DOCUMENT ME!

useRange - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

userBitmap - Variable in class gov.nih.mipav.model.file.FileGESigna4X

userBloodRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

useRBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents

userButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray

DOCUMENT ME!

userCity - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userComment - Variable in class gov.nih.mipav.model.file.FileSVS

userComment - Variable in class gov.nih.mipav.model.file.FileTiff

useRComp - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

userCompany - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userCompanyLogo - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userCountry - Variable in class gov.nih.mipav.model.file.FileInfoZVI

UserData() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.UserData

userDefaultDir - Static variable in class gov.nih.mipav.view.ViewUserInterface

This is the inputDir path that the user entered as a command line argument when running a script *

UserDefined - gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType

userDefinedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

DOCUMENT ME!

userDefinedExtensions - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

array of user defined extensions

userDefinedField - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue

DOCUMENT ME!

userDefinedMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

userDefinedMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

userDefinedShortcutModel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor

DOCUMENT ME!

userDefinedShortcutTable - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor

DOCUMENT ME!

userDirectoryLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

userDirectoryLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

userDirectoryLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

userDirectoryLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

userDirectoryLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

userDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

userDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

userDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

userDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

userDirectoryText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim

For color images only.

useRed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

If true, red image is selected as of the two images for calculating histogram.

useRed - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

useRed - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

useRedOnly - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

useRedThreshold - Variable in class gov.nih.mipav.view.PatientSlice

Flag indicating whether to threshold the red color channel:.

useReferenceResolutions - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages

When true resolution matching defaults to the reference image.

userFax - Variable in class gov.nih.mipav.model.file.FileInfoZVI

UserField(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Returns the reference of the user defined field vector number 'field_nb'.

userFillMapLSW - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

874 Describes what process fills in the user CVs, ifcc or TIR.

userFillMapMSW - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

870 Describes what process fills in the user CVs, ifcc or TIR.

userID - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userInfo - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

User information structure.

userInfoSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation

DOCUMENT ME!

userInput - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes

This is the user input for additional file extensions

userInputFileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes

This array is the list of additional file extensions that user typed in that is populated when user hits apply

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBottomHat

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation

The MIPAV user interface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Reference to the main user interface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Pointer to the user interface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogClose

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogConcat

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDeconvolution

locking the image

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Parent ui.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDistanceMap

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing

locking the image

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogErode

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation

Reference to userface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation

Reference to userface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

The user interface for this dialog box.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

user interface renference.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFindEdges

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFrameLinker

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogGaborFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim

Keeps record of the present structure of the application.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogIDObjects

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSet

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

ui must be set to access the list of images to set image-specfic options (ie,. log mode)

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMode

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMotionDetection

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

private int destExtents[];.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogNMSuppression

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogNoise

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogPadImages

Reference to the main user interface

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Reference to userface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D

Reference to userface.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSkeletonize

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

locking the image

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTopHat

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogUltErode

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Icon and log access.

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

userInterface - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Reference to the user interface.

userInterface - Variable in class gov.nih.mipav.view.ViewImageDirectory

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.ViewJFrameBase

Reference to the user interface.

userInterface - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

userInterface - Static variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery

userInterface - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

userInterface - Variable in class gov.nih.mipav.view.ViewMenuBar

The user interface for MIPAV.

userInterfaceReference - Static variable in class gov.nih.mipav.view.ViewUserInterface

A reference to the only ViewUserInterface object in MIPAV.

userLevelsButton - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

userLimits - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

userLimits - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userLimitsCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

userMax - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMax - Variable in class gov.nih.mipav.view.ViewJFrameGraph

userMaxLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMaxText - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

userMin - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMin - Variable in class gov.nih.mipav.view.ViewJFrameGraph

userMinLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userMinText - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

userName - Variable in class gov.nih.mipav.model.file.FileInfoCZI

userName - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userPhone - Variable in class gov.nih.mipav.model.file.FileInfoZVI

userRangeRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType

DOCUMENT ME!

userSetCostFunction() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Called to create the RegistrationMeasure-derived class associated with the current selection in the combo box of possible registration measures.

userSetDefaults() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Called to reset all of the controls to their default values.

userSetMultiPassControls() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Called to setup controls passed on the current state of the check box for selecting single- or two-pass registration.

userSetRefImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Accessor to set the target image.

userSetTargetSlice() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

Called whenever the user changes the selection of the target slice for 2.5D image registration.

userShortcutTable - Static variable in class gov.nih.mipav.view.Preferences

Hashtable that holds all user-defined shortcuts

userSpecifiedBlood - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

If true, user specifed rib, otherwise, voi specified rib

userSpecifiedBlood - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

userUsageTag - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

866 Defines how following user CVs are to be filled in.

userVOIButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

DOCUMENT ME!

userWeightFunct() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct

USERWNDLEVELS - Static variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

userXGrid - Variable in class gov.nih.mipav.view.ViewJComponentGraph

userYGrid - Variable in class gov.nih.mipav.view.ViewJComponentGraph

useSACenter - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

useSACenterBox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

checkbox telling the algorithm to use the scanner coordinate center rather than the image center

useScript - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

If true, the program is run from a script.

useScript - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

useScript - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

useSD_H - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

useSD_H - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

useSD_W - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D

useSD_W - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

useSeparable - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Whether to use a separable convolver during edge detection.

useSeparableCB - Variable in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor

Checkbox to elect to use the separable convolver in the edge detection algorithm.

useSeparateFrame - Variable in class gov.nih.mipav.view.JFrameHistogram

Whether this panel is contained in another frame or forms its own frame

useSliceSpacingCoarse() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Select the "coarse" slice sampling for rendering.

useSliceSpacingCoarse() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Select the "coarse" slice sampling for rendering.

useSliceSpacingFine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeAlignedVolumeTextureRender

Select the "fine" slice sampling for rendering.

useSliceSpacingFine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Retrieves whether the "fine" slice sampling is currently selected.

usesLUT - Variable in class gov.nih.mipav.model.file.FileOME

Whether the image has a lut already.

useSmartThresholding - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess

useSmartThresholding - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorComposite

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorDRR

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorLighting

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorMIP

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastColorReflection

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRR

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityDRRBresenham

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastIntensityMIP

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Renderer

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

usesNormals() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP

Return indication as to whether or not the particular renderer uses normal vectors as part of its implementation.

useSphere - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor

If true initialize surface as a sphere.

useSphere - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

When true estimates that boundary of the VOI by a sphere.

useSphereCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain

Initially not checked, estimates the boundary by a sphere rather than an ellipse.

useStandardMethod - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

useT2CheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData

DOCUMENT ME!

useTestData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

DOCUMENT ME!

useThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

DOCUMENT ME!

useThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

useThresholdChannelA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

useThresholdChannelB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

useVe - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

If false, second parameter is back-transfer rate (k_ep) If true, Second parameter is external celluar volume fraction (ve)

useVe - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

useVertexRounding - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Lines

useVertexRounding - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Points

useVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

useVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

useVOI - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

This flag is used by the fuzzy connectedness to indicate that a VOI should be used to calculate certain values to initialize the process.

useWeights - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

useWeights - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

UseWidget - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

turns the widget on/off in the GLSL shader code.

useYmean - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats

UseZSlice() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

USHORT - gov.nih.mipav.model.structures.ModelStorageBase.DataType

Data buffer is of type unsigned short (16 bits per voxal).

USHORT - Static variable in class gov.nih.mipav.model.file.FileDM3

DOCUMENT ME!

USHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the data buffer is of type unsigned short (16 bits per voxal).

USHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate, as a String, that the data buffer is of type unsigned short.

using_merged_upsample - Variable in class gov.nih.mipav.model.file.libjpeg.my_decomp_master

usub - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

USUB - gov.nih.mipav.model.structures.jama.SuperLU.MemType

UT - gov.nih.mipav.model.file.FileDicomTagInfo.VR

UTF_16 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets

UTF_16BE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets

UTF_16LE - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets

UTF_8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets

UTF_8 - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Iso2022Converter

util - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.Rbt

Utils() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.Utils

utime - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.SuperLUStat_t

uv() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex

UV - gov.nih.mipav.model.file.FileDicomTagInfo.VR

uVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

uVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

uVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

ux - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

uy - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

uz - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

V

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel

v - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel

v - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez

v - Variable in class gov.nih.mipav.model.algorithms.NL2sol

v - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

1D array of length nPts containing the orthogonal projection of residuals onto space spanned by the first pseudoRank linear independent columns of the Jacobian.

v - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

1D array of length nPts containing the orthogonal projection of residuals onto space spanned by the first pseudoRank linear independent columns of the Jacobian.

v - Variable in class gov.nih.mipav.model.algorithms.ODE

v - Variable in class gov.nih.mipav.model.algorithms.ODEEP

v - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2

v - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Tri

v - Variable in class gov.nih.mipav.model.algorithms.Statistics

v - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

v - Variable in class gov.nih.mipav.model.file.FileMATLAB

v - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node

v - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

v - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux

v - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_TristripAux

v - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter

v - Static variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

v - Static variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

v - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

V - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

V - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

V - Variable in class gov.nih.mipav.model.algorithms.OpticalFlowToolbox

V - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Edge

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Triangle

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjEdgeKey

DOCUMENT ME!

V - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition

Array for internal storage of eigenvectors.

V - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SingularValueDecomposition

Arrays for internal storage of U and V.

V() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

V() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

V(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

V(int, int, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg

v_expand - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdsample

v_father(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

v_idx(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

v_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

v_samp_factor - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info

v_touched(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

v_uv(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

v_valence(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM

v0 - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge

V0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

V0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

V0(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

Return the pointer to the ((j+1)%3)-th vertex of the face.

v0norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

v0norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

v0Text - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

v1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge

v1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

V1() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle

Returns index to point 1.

V1(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

v1norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

v1norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

v1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

v1v3d - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

v2 - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

v2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge

v2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

V2() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle

Returns index to point 2.

V2(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

v2norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

v2norm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

v2norm(int, double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol

v2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

v2v3d - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

v3 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle

V3() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle

Returns index to point 3.

v3Text - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

v6Num - Variable in enum gov.nih.mipav.model.file.FileSVS.Type

Number of type as specified by TIFF 6 format

v6Num - Variable in enum gov.nih.mipav.model.file.FileTiff.Type

Number of type as specified by TIFF 6 format

VA - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

VabraAlgorithm - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraAlgorithm() - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraAlgorithm

VabraConfiguration - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraConfiguration(File) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

VabraRBF - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraRBF() - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF

VabraSolver - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraSolver(VabraSubjectTargetPairs, File, File, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

VabraSubjectTargetPairs - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraSubjectTargetPairs(ModelImage, ModelImage, float, float, int, int, boolean, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs

VabraVolumeCollection - Class in gov.nih.mipav.model.algorithms.registration.vabra

VabraVolumeCollection(int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

VabraVolumeCollection(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

val - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities.IndexedFloat

val - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ValuePair

val - Variable in class gov.nih.mipav.model.structures.jama.METIS.ikv_t

VAL_BITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream

VAL_BITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream

valid - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.CL_data

VALID_INPUT - Static variable in class gov.nih.mipav.view.dialogs.JDialogLightBox

definitions indicating that user input has been validated.

validate() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator

DEBUGGING.

validate(MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegMetadataReaderTest

Validate(OctNode, float, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

Validate(OctNode, float, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

validateBytes(byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

validateCurrentNum(String, float, float) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

validate current number

validateCurrentNum(String, float, float) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

validate current number

validateCurrentNum(String, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

validate current number

validateData() - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

validate data

validateData() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

validateFilePaths() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

valdiates the file paths for the study path and gradient file path

validateIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader

validateIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

validateIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader

Ensures that the buffered bytes extend to cover the specified index.

validateIndex(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

Ensures that the buffered bytes extend to cover the specified index.

validateMinMaxNums(ModelImage, String, String) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel

validateParams() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

validate params

validateRequiredParams() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

validateUI() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1

validateUserInputString(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes

This method validates the user input file extensions.

validBitsPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoCZI

validBitsPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoZVI

validBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

True for source input locations not having image min or image max values.

validGUID - Variable in class gov.nih.mipav.model.file.NDARWriteData

validLine(String) - Method in class gov.nih.mipav.model.algorithms.libdt.ConfigFile

validRange - Variable in class gov.nih.mipav.model.file.FileInfoMincHDF

The valid range for image pixel values

validValues - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting

validVoxels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

validVoxels - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

valoffset - Variable in class gov.nih.mipav.model.file.libjpeg.d_derived_tbl

valptr - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

valptr[index] = pointer to where legal code values start.

VALPTR - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream

VALPTR - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

value - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.filters.BM3D.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.indexValue

value - Variable in class gov.nih.mipav.model.algorithms.libdt.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_node

value - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame.point

value - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.indexValueItem

value - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.indexValueItem

DOCUMENT ME!

value - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

the value to modify the image with.

value - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

huffman value for code.

value - Variable in class gov.nih.mipav.model.file.FileDicomTag

Actual value of the tag (may be an array of elements).

value - Variable in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit

Internal integer value stored by this unit.

value - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tgt_node_t

value - Variable in class gov.nih.mipav.model.file.FileSVS

value - Variable in class gov.nih.mipav.model.file.FileTiff

value - Variable in class gov.nih.mipav.model.file.FileXML.XMLAttributes

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorEncoding

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.ColorSpaceType

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingHalftoningAlgorithm

value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.RenderingIntent

value - Variable in class gov.nih.mipav.model.file.XMLParameter

Parameter value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterBoolean

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterDouble

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterFloat

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterInt

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterLong

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterShort

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterString

The parameter's value.

value - Variable in class gov.nih.mipav.model.scripting.parameters.ParameterUShort

The parameter's value.

value - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData

value - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

value - Variable in class gov.nih.mipav.view.ProgressChangeEvent

The value of the progress bar, the range is from 0~100

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineFloat

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineInt

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLinePoint3D

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.CmdLine.cmdLineString

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianProjectionFunction

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Feature

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.FeatureNode

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_node

value - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy.point

value() - Method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceEdgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceHalfedgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.FaceVertexIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshEdgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshFaceIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshHalfEdgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.MeshVertexIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator

value() - Method in class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator

value() - Method in annotation type gov.nih.mipav.model.file.MetadataExtractor.SuppressWarnings

The name of the warning to be suppressed.

value(int[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer

Value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.MatrixEntry

Value - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.NMatrixEntry

VALUE_FLAG - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

value_is_valid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

value_k - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

value1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

value2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

valueB - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

valueB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

valueB - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

valueBg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

32 - background value of non image locations.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance.SelectionListener

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline

Sets the remove index based on the selected index in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter

Goes through the list selection event's JList source to find selected VOI list items.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter

Goes through the list selection event's JList source to find selected VOI list items.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter

Goes through the list selection event's JList source to find selected VOI list items.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.JPanelListController

handles list change events made when selecting from either left or right list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights

Sets values of sliders and intensities appropriately based on which light was chosen in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The override necessary to be a ListSelectionListener.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

Sets values of sliders and intensities appropriately based on which light was chosen in the list.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

A List Selection Listener event for changes in the tables.

valueChanged(ListSelectionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages

Whenever the list changes, the valueChanged is called.

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.CheckTreeManager

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir

Updates the table based on tree selection

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

Updates the ViewJFrameImage when a VOI/contour is selected.

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

Updates the ViewJFrameImage when a VOI/contour is selected.

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Updates the ViewJFrameImage when a VOI/contour is selected.

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.JPanelTreeController

handles tree change events made when selecting from either left or right tree.

valueChanged(TreeSelectionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory

Re-create the image and header info by reacting to each selection on the tree.

valueG - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

valueG - Variable in class gov.nih.mipav.view.dialogs.JDialogMask

DOCUMENT ME!

valueI - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath

imaginary part of value to modify complex or dcomplex image with or green color of color image.

valueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

valueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

valueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

valueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

valueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

valueLength - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.fraud_pair_item

valueMultiplicity - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo

Allowed value multiplicity (vm) for this tag.

valueOf(double) - Static method in class gov.nih.mipav.util.DoubleDouble

Converts the double argument to a DoubleDouble number.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.CovarianceAlgorithmType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DenseLinearAlgebraLibraryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DoglegType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DumpFormatType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LoggingType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.MinimizerType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.Ownership

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.TerminationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver2.StorageType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.Covdet.VlFrameType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDataFormat

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHogVariant

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.cov_reg_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.cov_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.fill_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.kf_mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.norm_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_crit

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_vars

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.Verbose_mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.libdt.Ymean_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.im_format

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.interp_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.tform_type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.PredictionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.SplitRule

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.TreeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMapWindowType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Modality

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Unit

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoBase.UnitType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileInfoDicom.VRtype

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileSVS.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.FileTiff.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_BUF_MODE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_COLOR_TRANSFORM

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mctype_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.miptype_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mobjtype_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.moptions_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.moptype_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mrtype_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.METIS.rstatus_et

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.colperm_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.fact_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.LU_space_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.MemType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.milu_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.norm_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.rule_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.stack_end_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.trans_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.yes_no_t

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in class gov.nih.mipav.util.DoubleDouble

Converts the string argument to a DoubleDouble number.

valueOf(String) - Static method in enum gov.nih.mipav.view.Argument.InstanceArgument

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Argument.StaticArgument

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.ExitStatus

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.JDialogCaptureScreen.WindowProperties

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.GetPath.Purpose

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.ComplexDisplay

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.DefaultDisplay

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.InterpolateDisplay

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.LogLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.OperatingSystem

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.Preferences.SystemArchitecture

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum gov.nih.mipav.view.ViewJSlider.SliderType

Returns the enum constant of this type with the specified name.

ValuePair(K, V) - Constructor for class gov.nih.mipav.model.algorithms.StochasticForests.ValuePair

valueR - Variable in class gov.nih.mipav.view.dialogs.JDialogLightboxGen

valueRepresentation - Variable in class gov.nih.mipav.model.file.FileDicomTag

Value representation for this tag, if the tags in this dicom file have explicit VRs.

valueRepresentation - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo

DICOM value representation (vr) for this tag.

values - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

values - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

values - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo

values - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CRSMatrix

values - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraRBF

values - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

values - Variable in class gov.nih.mipav.model.file.FileMetaImage

values - Variable in class gov.nih.mipav.model.file.FileMincAttElem

DOCUMENT ME!

values - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

values() - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.kernelType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.SpeedUpLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.CovarianceAlgorithmType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DenseLinearAlgebraLibraryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DoglegType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.DumpFormatType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverTerminationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.LoggingType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.MinimizerType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.NonlinearConjugateGradientType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.Ownership

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.SparseLinearAlgebraLibraryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.TerminationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStrategyType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CeresSolver2.StorageType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorMap

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.ContourPlot.DefaultColorScheme

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.Covdet.VlFrameType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.CVODES.SUNLinearSolver_Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDataFormat

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDirection

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.Coefficient

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteTransformType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.MODE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHogVariant

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.cov_reg_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.cov_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.fill_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.kf_mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.norm_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_crit

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.Split_vars

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.Verbose_mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.libdt.Ymean_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.im_format

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.interp_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.Mat_rm_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SIFT3D.tform_type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.ImportanceMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.MemoryMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.PredictionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.SplitRule

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.StochasticForests.TreeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMapWindowType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Modality

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoBase.Unit

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoBase.UnitType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileInfoDicom.VRtype

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileSVS.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.FileTiff.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_BUF_MODE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_COLOR_SPACE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_COLOR_TRANSFORM

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_DCT_METHOD

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_DITHER_MODE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.libjpeg.J_MESSAGE_CODE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_op

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mctype_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mdbglvl_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.miptype_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mobjtype_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.moptions_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.moptype_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.mrtype_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.METIS.rstatus_et

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.colperm_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Dtype_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.fact_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.IterRefine_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.LU_space_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.MemType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.milu_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Mtype_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.norm_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.PhaseType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.rowperm_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.rule_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.stack_end_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.Stype_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.trans_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.jama.SuperLU.yes_no_t

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Argument.InstanceArgument

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Argument.StaticArgument

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.ActionMetadata.ImageRequirements

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.FieldStrength

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.InversionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.ScannerType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.AlgorithmTreParams.Threshold

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.ExitStatus

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.JDialogCaptureScreen.WindowProperties

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.SwapMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.GetPath.Purpose

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.ComplexDisplay

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.DefaultDisplay

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.InterpolateDisplay

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.LogLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.OperatingSystem

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.Preferences.SystemArchitecture

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum gov.nih.mipav.view.ViewJSlider.SliderType

Returns an array containing the constants of this enum type, in the order they are declared.

Values(double) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceValue.Values

Creates a new Values object.

Values(double, double) - Constructor for class gov.nih.mipav.view.dialogs.JDialogReplaceValue.Values

Creates a new Values object.

values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix

values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix

values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix

values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix

values_index - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo

valuesOutside - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

values outside intensities for threshold

valuesOutside - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

intensity values to be used in thresholding

valuesOutsideB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

values outside intensities for threshold

valuesOutsideB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

intensity values to be used in thresholding

valuesOutsideG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

values outside intensities for threshold

valuesOutsideG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

intensity values to be used in thresholding

valuesOutsideR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

values outside intensities for threshold

valuesOutsideR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

intensity values to be used in thresholding

valuesOutsideTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

valuesOutsideTextFieldB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

valuesOutsideTextFieldG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

valuesOutsideTextFieldR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

text fields

valuesPerPixel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE

Number of elements in a pixel.

valuesPerPixel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal

number of elements in a pixel.

valuesPerPixel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch

DOCUMENT ME!

valuesPerPixel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

DOCUMENT ME!

valuesPerPixel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

number of elements in a pixel.

valuesRGB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

ValueStr - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML

array of strings representing the tags under in the Gifti xml schema.

valueTables - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData

valueTables - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueAndNormalFunction

valueTables - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PointIndexValueFunction

valueText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

valueText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

valueText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

valueText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

valueText - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

valueType - Variable in class gov.nih.mipav.model.file.XMLParameter

Parameter value type.

valueTypeBox - Variable in class gov.nih.mipav.view.JPanelEditValueType

DOCUMENT ME!

VAN_DER_POL - Variable in class gov.nih.mipav.model.algorithms.ODE

VAN_DER_POL - Variable in class gov.nih.mipav.model.algorithms.ODEEP

vanishing_moments_phi - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet

vanishing_moments_psi - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet

var - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

Var() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the variance of the matrix.

Var() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Var(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Calculates the variance the vector.

var_I - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter

varAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

DOCUMENT ME!

varArray - Variable in class gov.nih.mipav.model.file.FileInfoMinc

DOCUMENT ME!

VARC - gov.nih.mipav.model.algorithms.libdt.Split_vars

VarCol(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix

Calc the variance of each column into a vector.

varEcho - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

648 Variable echo flag.

varf(double[], int, double[], boolean, boolean[], double[], int, double, int, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

varfCalled - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

VARGC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

vari - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

variable_importance - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.growTreesInThread

variable_importance - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

variable_importance - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree

variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Data

variableBandwidth - Variable in class gov.nih.mipav.model.file.FileGESigna4X

variableBandwidth - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

variableDeltasCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

variableFlipAngleFlag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

VariableTable - Class in gov.nih.mipav.model.scripting

A table used to store variables and their values.

VariableTable() - Constructor for class gov.nih.mipav.model.scripting.VariableTable

Creates a new VariableTable object.

variableThresholds - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

variableThresholds - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

DOCUMENT ME!

VARIABLY_DIMENSIONED_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.LsqFit

VARIABLY_DIMENSIONED_FUNCTION - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

variance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

If true calculate glcm variance Sum over i,j of Probability(i,j) * (i - glcm mean) * (i - glcm mean) = Sum over i,j of Probability(i,j) * (j - glcm mean) * (j - glcm mean).

variance - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

If true calculate glcm variance Sum over i,j of Probability(i,j) * (i - glcm mean) * (i - glcm mean) = Sum over i,j of Probability(i,j) * (j - glcm mean) * (j - glcm mean).

variance - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest.computeTreePermutationImportanceInThread

variance - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

variance - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

varianceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

varianceCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

varianceEstimator - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

varianceEstimator - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

varianceEstimatorLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

varianceGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

variant - Variable in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog

variation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg

varInverse - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow

DOCUMENT ME!

varMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

varmin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

varphij - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats

vars - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexSplitParams

varSet() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener

varSet() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener

varSet() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener

VARY - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

vas_collapse - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

586 Collapse image.

vascularImagingFlags - Variable in class gov.nih.mipav.model.file.FileGESigna4X

vascularImagingFlags - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

VASCULATURE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Value which indicates a voxel in the segmenation image that is part of the vasculature (arterial or veinous).

VASCULATURE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Value which indicates a voxel in the segmenation image that is part of the vasculature (arterial or veinous).

vasculatureBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

The root branch group of the vasculatureBG.

vasMode - Variable in class gov.nih.mipav.model.file.FileGESigna4X

vasMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

vasMode - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

744 Vascular Mode.

vattArray - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

Vaxpy_Serial(double, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

vb_pro_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

VB_PRO_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

vBase - Variable in class gov.nih.mipav.model.file.FileVOI.VOISortItem

DOCUMENT ME!

vbuf - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor

< all y-locations on step grid.

vbuf_zm - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor

< video buffer to store current frames [vrows,vcols,patopt.win.z] type=OPT_MAT_TYPE.

vbw - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

394 Variable Bandwidth (Hz).

VCenterOffset - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

vcols - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex

< initial state covariance

vcols - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor

< options for extracting patches.

VCopy_Serial(CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

vd1 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

vd2 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

VDiff_Serial(CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

ve - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.IntModel

veButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

vec - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_res_cont

VecCat(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

Concatenates a vector to the end of this vector.

VecCat3(CDVector, CDVector, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

Concatenates three vectors.

vecswap(double[], int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter

Swaps x[a ..

vector - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges

vector - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

VECTOR_DIRECTION_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

VECTOR_DIRECTION_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

vector_gradient - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

vector_gradient_is_valid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

VECTOR_MAGNITUDE_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

VECTOR_MAGNITUDE_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

VECTOR_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileLSM

Types of drawing elements.

vector_x - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

vector_x_is_valid - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

Vector2Image(CDVector, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Conversion from a texture vector to a shape-free image.

Vector2Matrix(CDVector, CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame

Conversion from a texture vector to a shape-free matrix.

vectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

DOCUMENT ME!

vectorCopyFunct - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

vectorCrossProduct(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

Returns orgthogonal vector.

VectorD - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

VectorD() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

VectorD(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

VectorD(int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

VectorD(VectorD) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD

vectorDeleteFunct - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

vectorDirectionButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

vectorDirectionMedian(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Only used with color images in vector filtering.

VectorF - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

VectorF() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

VectorF(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

VectorF(int, float[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

VectorF(VectorF) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF

vectorGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

vectorize(libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt

vectorMagnitudeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

vectorMagnitudeMedian(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Only used with color images in vector filtering.

Vectornd - Class in gov.nih.mipav.model.algorithms

N dimension vector class with the cost value.

Vectornd() - Constructor for class gov.nih.mipav.model.algorithms.Vectornd

Vectornd(double[]) - Constructor for class gov.nih.mipav.model.algorithms.Vectornd

Vectornd(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.Vectornd

Vectornd(double[], double) - Constructor for class gov.nih.mipav.model.algorithms.Vectornd

Vectornd(double[], double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.Vectornd

VectorNormalization(double[], int) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

vectorSelected(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener

handles the VOI being selected.

vectorSelected(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

un-implemented.

vectorSelected(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

un-implemented.

vectorSelected(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

un-implemented.

vectorSelected(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

VEINOUS_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Value which indicates a voxel in the segmenation image that is part of the veinous vasculature tree.

VEINOUS_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Value which indicates a voxel in the segmenation image that is part of the veinous vasculature tree.

velocity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Velocity vector.

velocity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Velocity vector.

VELOCITY - gov.nih.mipav.model.file.FileInfoBase.UnitType

velocityDx - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

default initial velocity (dx):.

velocityDy - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

default initial velocity (dx):.

velocitySlider - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView

fly Speed control slider.

velocityTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Transfrom velocity.

velocityTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Transfrom velocity.

venc - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

576 Phase contrast velocity encoding (mm/sec).

vencScale - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

732 Scale Weighting Venc (Velocity Encoding/PI).

vencScalingFactor - Variable in class gov.nih.mipav.model.file.FileGESigna4X

vencScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

verbose - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

verbose - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.Options

verbose - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject

verbose - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2

verbose - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

verbose - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

verbose - Variable in class gov.nih.mipav.model.algorithms.libdt.EMOptions

verbose - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

verbose - Variable in class gov.nih.mipav.model.algorithms.NelderMead

verbose - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

verbose - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

verbose - Variable in class gov.nih.mipav.model.algorithms.SIFT

verbose - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Reg_SIFT3D

verbose - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

verbose - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

verbose - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

verbose - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

verbose - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

verbose - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

verbose - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

verbose - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

VERBOSE - gov.nih.mipav.model.algorithms.libdt.Verbose_mode

Verbose_mode() - Constructor for enum gov.nih.mipav.model.algorithms.libdt.Verbose_mode

verbose_out - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

verbose_out - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

verboseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

verboseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

verboseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

verboseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

verboseCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

verbosity - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB

< Cost of each merge

verification - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver

Reference to the DICOM verification object.

verified - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

verified - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

verified - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

verify() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Verification

Initiate verification of connection between client and server (i.e. ping).

verify(String) - Static method in class gov.nih.mipav.model.file.FileDicomKey

Checks that the String s indeed refers to a String that is a valid key, two comma-separated hexidecimal numbers in the format of "[four digit Group number],[four digit element number]".

verify_keys(SIFT3D.Keypoint_store, SIFT3D.Image) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

VerifyDiagonalBlocks(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest

verifyImage(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

verifyPP(double[][][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

verifySOPClass(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_SOP

Verifies the SOP class UID.

verifySOPClass(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Verification

Verifies the SOP class UID.

version - Variable in class gov.nih.mipav.model.algorithms.Cephes

version - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric

Tells whether real number of complex number version

version - Variable in class gov.nih.mipav.model.algorithms.Gamma

GAMMA, LGAMMA, CGAMMA, or INCOG

version - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric

Tells whether real number or complex number version

version - Variable in class gov.nih.mipav.model.algorithms.JacobianElliptic

Tells whether real number or complex number version

version - Variable in class gov.nih.mipav.model.algorithms.Psi

REAL_VERSION or COMPLEX_VERSION

version - Variable in class gov.nih.mipav.model.file.FileDicomTagInfo

Version of the tag.

version - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

version - Variable in class gov.nih.mipav.model.file.FileInfoICS

DOCUMENT ME!

version - Variable in class gov.nih.mipav.model.file.FileInfoJSON

version - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB

version - Variable in class gov.nih.mipav.model.file.FileInfoMedVision

DOCUMENT ME!

version - Variable in class gov.nih.mipav.model.file.FileInfoMGH

Currently version number is 1

version - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

par/rec version

version - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Version number, current is 2

version - Variable in class gov.nih.mipav.model.file.FileMGH

Present version number is 1.

version - Variable in class gov.nih.mipav.model.file.FilePARREC

version

version - Static variable in class gov.nih.mipav.view.MipavUtil

The current version number, coded as a String, read and then cached by getVersion().

versionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNRRD

Version of the NRRD file format being used.

versionNumber - Variable in class gov.nih.mipav.model.file.FileNRRD

Version of the NRRD file format being used.

vert - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

VERT_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

vertical (2D only).

VERT_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

vertical (2D only).

vertebraeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

vertebraeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

vertebraeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

vertebraeMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

vertebraeMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

vertebraeMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

vertebraeMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT

DOCUMENT ME!

vertebraeMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT

DOCUMENT ME!

vertebraeMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

vertex - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon

vertex - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

vertex - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex_list

vertex - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelQuadMesh

Holds vertices in the mesh.

vertex - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge

vertex() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge

Vertex - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

Vertex() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Vertex

Vertex() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex

Creates a new Vertex object.

Vertex() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

Vertex(int) - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.Vertex

Constructs a vertex in the table.

VERTEX - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint

Paint the ModelTriangleMesh vertex color:

VERTEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM

Paint the TriMesh vertex color:

VERTEX_COLOR - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture

Displays the ModelImage with per-vertex colors:.

vertex_edge(LSCM.Vertex, LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertex_halfedge(LSCM.Vertex, LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertex_id(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertex_node() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.vertex_node

vertex_weights_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph

vertex1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem

vertex2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem

VertexAttribute() - Constructor for class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceTopology.VertexAttribute

Construct an attribute for a vertex.

vertexBorderFromFace(TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags

vertexClear(TriMesh, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags

vertexClearB(TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags

vertexClearV(TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags

vertexCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM

Coordinate vertex point counter.

vertexCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FaceEdgesFunction

vertexData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

support for vtk

VertexData - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree

VertexData() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData

VertexDegreeLessThan(CeresSolver.Graph<Vertex>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.VertexDegreeLessThan

vertexDiffuse - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint

DOCUMENT ME!

vertexDiffuse - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

vertexDiffuse - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Vertex material diffuse color.

VertexEdgeIterator(LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexEdgeIterator

VertexFaceIterator(LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexFaceIterator

VertexInHalfedgeIterator(LSCM.Mesh, LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexInHalfedgeIterator

vertexList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes

vertexList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares

vertexMostCcwInHalfEdge(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexMostCcwOutHalfEdge(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexMostClwInHalfEdge(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexMostClwOutHalfEdge(LSCM.Vertex) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexNextCcwInHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexNextCcwOutHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexNextClwInHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexNextClwOutHalfEdge(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

vertexNumber() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

VertexOutHalfedgeIterator(LSCM.Mesh, LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexOutHalfedgeIterator

vertexSpecular - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

vertexSpecular - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Vertex material specular color.

VertexTotalOrdering(CeresSolver.Graph<Vertex>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.VertexTotalOrdering

VertexTotalOrderingInteger(CeresSolver.Graph<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.VertexTotalOrderingInteger

VertexTotalOrderingTotalOrdering() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

VertexTrait() - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexTrait

VertexVertexIterator(LSCM.Vertex) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.VertexVertexIterator

VertexWeight(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph

vertical - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend.ColormapLabel

VERTICAL - Static variable in class gov.nih.mipav.view.ViewJComponentLUT

Create vertical LUT.

VERTICAL - Static variable in class gov.nih.mipav.view.ViewJComponentLUTTable

Create vertical LUT.

verticalAnatomicalReference - Variable in class gov.nih.mipav.model.file.FileGESigna4X

verticalAnatomicalReference - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

verticalFOVString - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

vertical FOV

verticalGradient - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

verticalLandmark - Variable in class gov.nih.mipav.model.file.FileGESigna4X

verticalLandmark - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

verticalLineComp(float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

verticalLineEval(float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

verticalSpacing - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

verticalTalGridPts - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

vertices() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph

vertices() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph

vertices() - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

Vertices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData

Vertices - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM

Vertices() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices

Vertices(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices

vertices_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Graph

vertices_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph

VERTICES_METHOD - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

VERTICES_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

VERTICES_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

verticesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

verticesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

verts - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxFrame

Stores the 8 vertices of the bounding box.

verts - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

Verticies - can change if user slides slice.

verts - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.Mesh

VertTmark - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting

VertTmark() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.VertTmark

VERY_LONG - gov.nih.mipav.model.file.FileDicomTagInfo.NumType

A signed or unsigned integer in 2's complement is stored in the tag's value.

VERY_LONG_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

A string with VR "OV" is stored in the tag's value.

vesselAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

DOCUMENT ME!

vesselnessv2d() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement

vesselnessv3d() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement

veTotal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

Vf - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

Vf - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

VFi() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

vFilenames - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil

File name vector

vFOVTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

textfields *

VFp() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

VFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

vFrame2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB

vFrame2 - Variable in class gov.nih.mipav.model.file.FileMATLAB

vgrid2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

VHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

VHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

videoFormat - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream

DOCUMENT ME!

videoFormat - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream

DOCUMENT ME!

vidpath - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

VidSegm(int, int, int, int, libdt.norm_type, double, int, int, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.libdt.VidSegm

VidSeqSegmParams() - Constructor for class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

vidsize - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor

< bounding box (z) for patch locations.

vidsize - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm

view - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer

view - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptController

DOCUMENT ME!

view - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Parent frame transform3D view.

view - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

View object in rendering a three dimensional scene from one viewpoint.

view - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

View object in rendering a three dimensional scene from one viewpoint.

view - Variable in class gov.nih.mipav.view.renderer.MouseEventVector

Parent frame transform3D view.

view_score_weight - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions

view_to_canonical_view_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering

view_to_canonical_view_similarity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering

viewAlignedButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Radio Button for Perspective rendering.

viewAlignedButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Radio Button for Perspective rendering.

viewAlignedButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Radio Button for Perspective rendering.

viewButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Radio Button for Orthographic rendering.

viewButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Radio Button for Orthographic rendering.

viewButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Radio Button for Orthographic rendering.

viewChanged(FlyPathBehavior, int) - Method in interface gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.Callback

DOCUMENT ME!

viewChanged(FlyPathBehavior, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

Implementation of the FlyPathBehavior.Callback interface.

viewChanged(FlyPathBehavior_WM, int) - Method in interface gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.Callback

ViewChanged callback for flythrough renderers.

viewChanged(FlyPathBehavior_WM, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

viewChanged(NavigationBehavior, int) - Method in interface gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.Callback

ViewChanged callback for flythrough renderers.

viewChanged(NavigationBehavior, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Navigation behavior callback handler

ViewControlsImage - Class in gov.nih.mipav.view

This class builds the control panel used in ViewJFrameImage frames.

ViewControlsImage(ViewJFrameBase) - Constructor for class gov.nih.mipav.view.ViewControlsImage

Constructs new control panel.

ViewDICOMDoubleListPanel - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewDICOMDoubleListPanel(JTable, JTable) - Constructor for class gov.nih.mipav.view.ViewDICOMDoubleListPanel

Creates a new ViewDICOMDoubleListPanel object.

viewDirection - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot

DOCUMENT ME!

viewDirection - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged

camera viewding direction.

viewDirection - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged

camera viewding direction.

ViewDirectoryChooser - Class in gov.nih.mipav.view

THIS CLASS IS MOST LIKELY TO BE DESTROYED!!!!!!!!!!

ViewDirectoryChooser() - Constructor for class gov.nih.mipav.view.ViewDirectoryChooser

Creates a dialog for choosing a directory.

ViewDirectoryChooser(Component) - Constructor for class gov.nih.mipav.view.ViewDirectoryChooser

Creates a dialog for choosing a directory with a parent frame.

ViewerTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

ViewFileChooserBase - Class in gov.nih.mipav.view

Encapsulates a JFileChooser with MIPAV related components.

ViewFileChooserBase(boolean, boolean) - Constructor for class gov.nih.mipav.view.ViewFileChooserBase

Creates a new ViewFileChooserBase object.

ViewFileChooserSubsample - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewFileChooserSubsample() - Constructor for class gov.nih.mipav.view.ViewFileChooserSubsample

Creates a new ViewFileChooserSubsample object.

ViewFileChooserSubsample(String) - Constructor for class gov.nih.mipav.view.ViewFileChooserSubsample

Creates a new ViewFileChooserSubsample object.

ViewFileTreeNode - Class in gov.nih.mipav.view

This class is used to represent a file system in a tree.

ViewFileTreeNode(File) - Constructor for class gov.nih.mipav.view.ViewFileTreeNode

Loads a File into the tree-leaf.

ViewFileTreeNode(File, boolean) - Constructor for class gov.nih.mipav.view.ViewFileTreeNode

Loads a File into a tree-leaf.

ViewImageDirectory - Class in gov.nih.mipav.view

Tree of images beneath the given directory.

ViewImageDirectory(String, ViewImageFileFilter) - Constructor for class gov.nih.mipav.view.ViewImageDirectory

Creates new tree of images and sets up file filter.

ViewImageDirectory.ImageNameComparator - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewImageFileFilter - Class in gov.nih.mipav.view

A simple file filter to display only files with the appropriate extension in the file dialog.

ViewImageFileFilter(int) - Constructor for class gov.nih.mipav.view.ViewImageFileFilter

Constructs new filter of given type.

ViewImageFileFilter(String[]) - Constructor for class gov.nih.mipav.view.ViewImageFileFilter

Constructs a dynamic filter, with the given extensions.

ViewImageUpdateInterface - Interface in gov.nih.mipav.view

Interface to update display of an image.

ViewJColorChooser - Class in gov.nih.mipav.view

This is a color chooser designed so that the preview panel is not shown.

ViewJColorChooser(Component, String, ActionListener, ActionListener) - Constructor for class gov.nih.mipav.view.ViewJColorChooser

Constructor Constructs the color chooser panel and dialog.

ViewJColorChooser(Component, String, ActionListener, ActionListener, boolean) - Constructor for class gov.nih.mipav.view.ViewJColorChooser

Constructor Constructs the color chooser panel and dialog.

ViewJComponentAnimate - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJComponentAnimate(ViewJFrameBase, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], int[], float, int[], boolean, float, boolean) - Constructor for class gov.nih.mipav.view.ViewJComponentAnimate

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentAnimateClip - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJComponentAnimateClip(float, int, int, int) - Constructor for class gov.nih.mipav.view.ViewJComponentAnimateClip

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentBase - Class in gov.nih.mipav.view

Abstract class used for displaying images in the program MIPAV.

ViewJComponentBase(int, int, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJComponentBase

creates object of size defined by width & height.

ViewJComponentBase(Dimension) - Constructor for class gov.nih.mipav.view.ViewJComponentBase

creates object of size defined by width & height.

ViewJComponentBoxFrame - Class in gov.nih.mipav.view.renderer.J3D

The red bounding box of the surface renderer.

ViewJComponentBoxFrame(float, float, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxFrame

Creates 8 verticies with 12 edges, a rectangular cube, that represents the bounding box frame of the surface renderer.

ViewJComponentBoxSlice - Class in gov.nih.mipav.view.renderer.J3D

Four lines that are the border of a slice in the surface renderer.

ViewJComponentBoxSlice(float, float, float, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

Creates new frame around slice.

ViewJComponentColocalizationEM - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJComponentColocalizationEM(ViewJFrameBase, ModelImage, ModelImage, ModelImage, ModelLUT, float[], boolean, boolean, boolean, double, double, double, double, double, double, int[], int[], float, int[], boolean, int, int, int, int, double[][], double[], double[], double[]) - Constructor for class gov.nih.mipav.view.ViewJComponentColocalizationEM

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentColocalizationRegression - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJComponentColocalizationRegression(AlgorithmColocalizationRegression, ViewJFrameBase, ViewJFrameColocalizationRegression, ModelImage, ModelImage, ModelImage, ModelLUT, float[], boolean, boolean, boolean, float, float, boolean[], float[], float[], float[], float[], double, double, double, double, double, double, double, double, double, double, boolean, int[], int[], float, int[], boolean, boolean, int, int, int, int, boolean, float, ViewUserInterface) - Constructor for class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentDTIImage - Class in gov.nih.mipav.view

ViewJComponent DTI Image

ViewJComponentDTIImage(ViewJFrameBase, ModelImage, ModelLUT, float[], int[], float, int[], boolean, int, float[]) - Constructor for class gov.nih.mipav.view.ViewJComponentDTIImage

constructor

ViewJComponentEditImage - Class in gov.nih.mipav.view

Basic displayable image object in MIPAV.

ViewJComponentEditImage(ViewJFrameBase, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], int[], float, int[], boolean, int) - Constructor for class gov.nih.mipav.view.ViewJComponentEditImage

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentFunct - Class in gov.nih.mipav.view

This is a custom made Swing component.

ViewJComponentFunct() - Constructor for class gov.nih.mipav.view.ViewJComponentFunct

Constructor - creates empty function.

ViewJComponentFunct(float[], float[], int, VOI, int[][]) - Constructor for class gov.nih.mipav.view.ViewJComponentFunct

Constructor - creates functions with specified coordinates, and number for name.

ViewJComponentFunct(float[], float[], Color, int, VOI, int[][]) - Constructor for class gov.nih.mipav.view.ViewJComponentFunct

Constructor - creates functions with specified coordinates, color, and number for name.

ViewJComponentFunct(float[], float[], Color, VOI, int[][]) - Constructor for class gov.nih.mipav.view.ViewJComponentFunct

Constructor - creates functions with specified coordinates and color.

ViewJComponentFunct(float[], float[], Color, String, VOI) - Constructor for class gov.nih.mipav.view.ViewJComponentFunct

Constructor - creates functions with specified coordinates, color, and name string.

ViewJComponentGraph - Class in gov.nih.mipav.view

This is a custom made Swing component.

ViewJComponentGraph(JFrame, int, int) - Constructor for class gov.nih.mipav.view.ViewJComponentGraph

Constructor - creates graph within the JPanel using graphics.

ViewJComponentGraphAxes - Class in gov.nih.mipav.view

ViewJComponentGraphAxes(int, int, int, int, String, int) - Constructor for class gov.nih.mipav.view.ViewJComponentGraphAxes

ViewJComponentHistoLUT - Class in gov.nih.mipav.view

This class extends the ViewJComponentHLUTBase class and used to coordinate how a histogram and LUT for an image are to be displayed to the screen.

ViewJComponentHistoLUT(HistoLUTParent, ModelHistogram, ModelLUT, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJComponentHistoLUT

Creates new component histogram LUT.

ViewJComponentHistoRGB - Class in gov.nih.mipav.view

This class extends the ViewJComponentHLUTBase class and used to coordinate how a histogram and LUT for an image are to be displayed to the screen.

ViewJComponentHistoRGB(HistoLUTParent, ModelHistogram, ModelRGB, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJComponentHistoRGB

Creates a Histogram RGB component.

ViewJComponentHLUTBase - Class in gov.nih.mipav.view

Abstract class used for generating custom components, especially within images.

ViewJComponentHLUTBase(HistoLUTParent, ModelHistogram, ModelImage, Dimension) - Constructor for class gov.nih.mipav.view.ViewJComponentHLUTBase

Creates object of size defined by width & height.

ViewJComponentLightBulbs - Class in gov.nih.mipav.view.renderer.J3D.surfaceview

Holds parent BranchGroup and an array of 8 spheres that represent the lights on the surface.

ViewJComponentLightBulbs(int, PickCanvas) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.ViewJComponentLightBulbs

Create an array of light bulb objects that can be rendered or picked.

ViewJComponentLUT - Class in gov.nih.mipav.view

Component LUT - the vertical or horizontal bar that gives a visual representation of the lookup table.

ViewJComponentLUT(ModelLUT, Dimension, int) - Constructor for class gov.nih.mipav.view.ViewJComponentLUT

Creates new component LUT.

ViewJComponentLUTTable - Class in gov.nih.mipav.view

Component LUT - the vertical or horizontal bar that gives a visual representation of the lookup table.

ViewJComponentLUTTable(ModelImage, ModelLUT, Dimension, int) - Constructor for class gov.nih.mipav.view.ViewJComponentLUTTable

Creates new component LUT.

ViewJComponentPedsAtlasIconImage - Class in gov.nih.mipav.view

ViewJComponentPedsAtlasIconImage(ViewJFrameBase, ModelImage, ModelLUT, float[], int[], float, int[], boolean, int, String) - Constructor for class gov.nih.mipav.view.ViewJComponentPedsAtlasIconImage

ViewJComponentPreviewImage - Class in gov.nih.mipav.view

Preview image displayed when the user clicks on an image file in the directory tree.

ViewJComponentPreviewImage(ModelImage, int[], PreviewImageContainer) - Constructor for class gov.nih.mipav.view.ViewJComponentPreviewImage

Creates new preview image from the model image.

ViewJComponentRegistration - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJComponentRegistration(ViewJFrameRegistration, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], int[], float, int[], boolean, int, float) - Constructor for class gov.nih.mipav.view.ViewJComponentRegistration

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentRegistration(ViewJFrameRegistrationTool, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], int[], float, int[], boolean, int, float) - Constructor for class gov.nih.mipav.view.ViewJComponentRegistration

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentRenderImage - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Abstract class used for displaying images in the program MIPAV.

ViewJComponentRenderImage(VolumeRenderer, ModelImage, ModelLUT, ModelImage, ModelLUT, int[], int[], int[], int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImage

ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentRenderImageRayCast - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Need to add.

ViewJComponentRenderImageRayCast(VolumeRenderer, ModelImage, ModelLUT, ModelImage, ModelLUT, int[], int[], int[], int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageRayCast

ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentRenderImageShearWarp - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Need to add.

ViewJComponentRenderImageShearWarp(VolumeRenderer, ModelImage, ModelLUT, ModelImage, ModelLUT, int[], int[], int[], int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.ViewJComponentRenderImageShearWarp

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentSingleRegistration - Class in gov.nih.mipav.view

Extended version of ViewJComponentEditImage, used ONLY within the ViewJFrameRegistrationTool This class is tailored to support Reference and Adjusted markers for use with Least Squares and Thin Plate Splines registration operations.

ViewJComponentSingleRegistration(ViewJFrameBase, ModelImage, ModelLUT, float[], int[], float, int[], boolean, int, boolean) - Constructor for class gov.nih.mipav.view.ViewJComponentSingleRegistration

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

ViewJComponentSurface - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview

Component surface created from a 2D image.

ViewJComponentSurface(RenderViewBase, ModelImage, ModelLUT, int[], int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

Constructs a new component and sets up the variables.

ViewJComponentSurfaceVolume - Class in gov.nih.mipav.view.renderer.J3D

Texture mapped image volume displayed in the surface renderer. .

ViewJComponentSurfaceVolume(RenderViewBase, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], VolumeTexture, int[]) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume

Constructs new component image plane with the appropriate arrays.

ViewJComponentTriImage - Class in gov.nih.mipav.view

One of the component images that make up the triplanar view (AXIAL, SAGITTAL, and CORONAL views).

ViewJComponentTriImage(ViewJFrameBase, ModelImage, ModelLUT, float[], ModelImage, ModelLUT, float[], int[], float, int[], boolean, int) - Constructor for class gov.nih.mipav.view.ViewJComponentTriImage

The TriImage component constructor.

ViewJComponentTriSliceImage - Class in gov.nih.mipav.view.renderer.J3D

Image plane displayed in the surface renderer.

ViewJComponentTriSliceImage(SurfaceRender, ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage

Constructs new component image plane with the appropriate arrays.

ViewJComponentVolOpacity - Class in gov.nih.mipav.view.renderer.J3D

This class is used to coordinate how a histogram and LUT for an image are to be displayed to the screen.

ViewJComponentVolOpacity(JPanelVolOpacity, ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Deprecated.

ViewJComponentVolOpacity(ViewJComponentVolOpacityListener, ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity

Creates new component histogram LUT.

ViewJComponentVolOpacityBase - Class in gov.nih.mipav.view.renderer

Abstract class used for generating custom components, especially within images.

ViewJComponentVolOpacityBase(JPanelVolOpacityBase, ModelHistogram, ModelImage, Dimension) - Constructor for class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

Creates object of size defined by width & height.

ViewJComponentVolOpacityBase(ViewJComponentVolOpacityListener, ModelHistogram, ModelImage, Dimension) - Constructor for class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase

ViewJComponentVolOpacityListener - Interface in gov.nih.mipav.view.renderer

Created so the JPanelVolOpacity can be used in more generic container classes.

ViewJComponentVolOpacityRGB - Class in gov.nih.mipav.view.renderer

This class extends the ViewJComponentVolOpacityBase class and used to coordinate how a histogram and LUT for an image are to be displayed to the screen.

ViewJComponentVolOpacityRGB(JPanelVolOpacityRGB, ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Creates a Histogram RGB component.

ViewJComponentVolOpacityRGB(ViewJComponentVolOpacityListener, ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityRGB

Creates new component histogram LUT.

ViewJFilterAnimate - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJFilterAnimate(int, float) - Constructor for class gov.nih.mipav.view.ViewJFilterAnimate

Creates a new ViewJFilterAnimate object.

ViewJFrameAnimate - Class in gov.nih.mipav.view

This class produces a frame surrounding an image whose slices are animated.

ViewJFrameAnimate(ModelImage, ModelLUT, ModelImage, ModelLUT, ModelRGB, ModelRGB, ViewJFrameBase, int, int, int, boolean, Color, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate

Makes a frame of the animated image.

ViewJFrameAnimate.CBackForward - Class in gov.nih.mipav.view

continuous backward and forward - continuously cycles from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimate.cbfStop - Class in gov.nih.mipav.view

Continuous back and forth has been selected.

ViewJFrameAnimate.CForward - Class in gov.nih.mipav.view

continuous forward continuously cycles from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimate.cfStop - Class in gov.nih.mipav.view

Threads are used because they are required by the sleep function. cf , fStop, crStop, and rStop set stop to true and keep sleeping for 5 millisecond intervals until the other 3 animation modes have ended.

ViewJFrameAnimate.CReverse - Class in gov.nih.mipav.view

continuous reverse continuously cycles from last to frist slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimate.crStop - Class in gov.nih.mipav.view

Continuous reverse has been selected.

ViewJFrameAnimate.Forward - Class in gov.nih.mipav.view

forward cycles a single time from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimate.fStop - Class in gov.nih.mipav.view

Forward has been selected.

ViewJFrameAnimate.Reverse - Class in gov.nih.mipav.view

reverse cycles a single time from last to first slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimate.rStop - Class in gov.nih.mipav.view

Reverse has been selected.

ViewJFrameAnimateClip - Class in gov.nih.mipav.view

This class produces a frame surrounding an image whose slices are animated.

ViewJFrameAnimateClip(ModelImage, int, int, int) - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip

Makes a frame of the animated image.

ViewJFrameAnimateClip.CBackForward - Class in gov.nih.mipav.view

continuous backward and forward - continuously cycles from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimateClip.cbfStop - Class in gov.nih.mipav.view

Continuous back and forth has been selected.

ViewJFrameAnimateClip.CForward - Class in gov.nih.mipav.view

continuous forward continuously cycles from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimateClip.cfStop - Class in gov.nih.mipav.view

Threads are used because they are required by the sleep function. cf , fStop, crStop, and rStop set stop to true and keep sleeping for 5 millisecond intervals until the other 3 animation modes have ended.

ViewJFrameAnimateClip.CReverse - Class in gov.nih.mipav.view

continuous reverse continuously cycles from last to frist slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimateClip.crStop - Class in gov.nih.mipav.view

Continuous reverse has been selected.

ViewJFrameAnimateClip.Forward - Class in gov.nih.mipav.view

forward cycles a single time from first to last slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimateClip.fStop - Class in gov.nih.mipav.view

Forward has been selected.

ViewJFrameAnimateClip.Reverse - Class in gov.nih.mipav.view

reverse cycles a single time from last to first slice unless a pause suspends the loop in 5 millisecond sleep functions or a stop causes the loop to exit.

ViewJFrameAnimateClip.rStop - Class in gov.nih.mipav.view

Reverse has been selected.

ViewJFrameBase - Class in gov.nih.mipav.view

This is an abstract class used to display images in a 2D planar format.

ViewJFrameBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJFrameBase

Makes an image frame.

ViewJFrameColocalizationEM - Class in gov.nih.mipav.view

This class produces a frame surrounding a 2D histogram with ellipses surrounding the most prominent clusters.

ViewJFrameColocalizationEM(ModelImage, ModelLUT, ModelImage, ModelLUT, ModelRGB, ModelImage, ViewJFrameBase, boolean, boolean, boolean, double, double, double, double, double, double, int, int, int, int, double[][], double[], double[], double[]) - Constructor for class gov.nih.mipav.view.ViewJFrameColocalizationEM

Makes a frame of the animated image.

ViewJFrameColocalizationRegression - Class in gov.nih.mipav.view

This class produces a frame surrounding a 2D histogram with a orthogonal least squares regression line and a threshold point that slides along the line.

ViewJFrameColocalizationRegression(AlgorithmColocalizationRegression, ModelImage, ModelLUT, ModelImage, ModelLUT, ModelRGB, ModelImage, ViewJFrameBase, boolean, boolean, boolean, float, float, float, float, boolean[], float[], float[], float[], float[], double, double, double, double, double, double, double, double, double, double, boolean, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Makes a frame of the colocalization histogram.

ViewJFrameCreatePaint - Class in gov.nih.mipav.view

Frame that allows the creation of custom paint brushes.

ViewJFrameCreatePaint() - Constructor for class gov.nih.mipav.view.ViewJFrameCreatePaint

Main constructor.

ViewJFrameCreatePaint.JDialogGridSize - Class in gov.nih.mipav.view

Simple dialog to prompt user for grid size

ViewJFrameDICOMParser - Class in gov.nih.mipav.view

DICOM parser - shows pertinent DICOM tags, allows user to sort on specific values in the tags and open the proper images.

ViewJFrameDICOMParser(String) - Constructor for class gov.nih.mipav.view.ViewJFrameDICOMParser

Creates new frame.

ViewJFrameDICOMParser.TableListener - Class in gov.nih.mipav.view

Table listener - listens for clicks on any of the three table headers or clicks within each table.

ViewJFrameDICOMQuery - Class in gov.nih.mipav.view

GUI for DICOM Query and retreival from DICOM compliant servers.

ViewJFrameDICOMQuery() - Constructor for class gov.nih.mipav.view.ViewJFrameDICOMQuery

Constructs three tabbed panels - DICOM Query, Host and Help panels.

ViewJFrameDICOMQuery.MoveRequestInfo - Class in gov.nih.mipav.view

Simple class to support move requests.

ViewJFrameFastMarching2 - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJFrameFastMarching2(ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.ViewJFrameFastMarching2

Creates a new ViewJFrameFastMarching2 object.

ViewJFrameFastMarching3 - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJFrameFastMarching3(ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.ViewJFrameFastMarching3

Creates a new ViewJFrameFastMarching3 object.

ViewJFrameGraph - Class in gov.nih.mipav.view

This is a frame which holds a graph in one panel and a set of user buttons in the other.

ViewJFrameGraph(float[][], float[][], String) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[][], float[][], String, VOI) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[][], float[][], String, VOI, String) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[][], float[][], String, String, String) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[][], float[][], String, String, String, Color[]) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, int[][]) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, VOI) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, VOI, String, int[][]) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, String, String) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, String, String, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(float[], float[], String, String, String, Color) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(ModelImage, int, boolean, int, double, double, float[], float[], String, String, String) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph(String, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameGraph

Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

ViewJFrameGraph.bColorListener - Class in gov.nih.mipav.view

This class is called by the color chooser when the user selects a a color from the background color chooser dialog box.

ViewJFrameGraph.CancelListener - Class in gov.nih.mipav.view

This class is called by the color chooser when the user cancels.

ViewJFrameGraph.ColorListener - Class in gov.nih.mipav.view

This class is called by the color chooser when the user selects a a color from the function line color chooser dialog.

ViewJFrameGraph.FitMode - Enum in gov.nih.mipav.view

ViewJFrameHistoLUT - Class in gov.nih.mipav.view

Deprecated.

ViewJFrameHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoLUT(ViewJComponentRegistration, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoLUT(ViewJFrameColocalizationEM, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoLUT(ViewJFrameColocalizationRegression, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoLUT(Frame, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

ViewJFrameHistoRGB - Class in gov.nih.mipav.view

Deprecated.

ViewJFrameHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

ViewJFrameHistoRGB(ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

ViewJFrameImage - Class in gov.nih.mipav.view

Makes a frame and put a single image component into it.

ViewJFrameImage(ModelImage) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Makes a frame and puts an image into it.

ViewJFrameImage(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Makes a frame and puts an image component into it, does not display the frame through ViewJFrameImage's init() method.

ViewJFrameImage(ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Makes a frame and puts an image into it.

ViewJFrameImage(ModelImage, ModelLUT, Dimension) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Makes a frame and puts an image component into it.

ViewJFrameImage(ModelImage, ModelLUT, Dimension, boolean) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Makes a frame and puts an image component into it.

ViewJFrameImage(ModelSimpleImage, String) - Constructor for class gov.nih.mipav.view.ViewJFrameImage

Constructs a ModelSimpleImage VJF

ViewJFrameImage.DicomQueryListener - Class in gov.nih.mipav.view

ViewJFrameImage.OkColorListener - Class in gov.nih.mipav.view

Pick up the selected color and call method to change the VOI color.

ViewJFrameLightBox - Class in gov.nih.mipav.view

This class builds a "light box" view of a 3D or 4D dataset.

ViewJFrameLightBox(ViewJFrameImage, String, ModelImage, ModelLUT, ModelImage, ModelLUT, float, float, Dimension, ViewControlsImage, VOIManagerInterface) - Constructor for class gov.nih.mipav.view.ViewJFrameLightBox

Builds the initial lightbox view.

ViewJFrameMemory - Class in gov.nih.mipav.view

Contains a seperatly running thread which checks the currently used and available memory.

ViewJFrameMemory() - Constructor for class gov.nih.mipav.view.ViewJFrameMemory

Constructor.

ViewJFrameMemory.MemoryMonitor - Class in gov.nih.mipav.view

Tracks Memory allocated & used, and notifies anybody who is interested in finding out about it.

ViewJFrameMessage - Class in gov.nih.mipav.view

This class produces a message frame where user data, logging and debug information can be displayed.

ViewJFrameMessage(String) - Constructor for class gov.nih.mipav.view.ViewJFrameMessage

Creates new frame.

ViewJFrameMessage.ScrollTextArea - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJFrameMessageGraph - Class in gov.nih.mipav.view

This class produces a message frame where user data and program can be displayed.

ViewJFrameMessageGraph(String) - Constructor for class gov.nih.mipav.view.ViewJFrameMessageGraph

Constructor.

ViewJFrameMultimodalitySingleViewer - Class in gov.nih.mipav.view

ViewJFrameMultimodalitySingleViewer(ModelImage, ViewJFrameImage) - Constructor for class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

ViewJFrameMultimodalitySingleViewer.MousePopupListener - Class in gov.nih.mipav.view

ViewJFrameMultimodalityViewer - Class in gov.nih.mipav.view

ViewJFrameMultimodalityViewer(ModelImage, ViewJFrameImage) - Constructor for class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

ViewJFrameMultimodalityViewer.MousePopupListener - Class in gov.nih.mipav.view

ViewJFramePaintVasculature - Class in gov.nih.mipav.view

Generates a MIP image from a 3D volume.

ViewJFramePaintVasculature(ModelImage, ModelLUT, Dimension, ViewJFrameBase) - Constructor for class gov.nih.mipav.view.ViewJFramePaintVasculature

Constructs the MIP frame and pops up the region grow dialog.

ViewJFramePlotterView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview

Title: ViewJFramePlotterView

ViewJFramePlotterView(ModelImage, ModelLUT, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

The frame the rendering the plotter view of images.

ViewJFramePlotterView.TabbedItem - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview

Item to hold tab name and corresponding panel.

ViewJFrameRegisteredImages - Class in gov.nih.mipav.view

Contains a seperatly running thread which checks the list of registered images.

ViewJFrameRegisteredImages() - Constructor for class gov.nih.mipav.view.ViewJFrameRegisteredImages

Constructor.

ViewJFrameRegisteredImages.ImageCellRenderer - Class in gov.nih.mipav.view

Identifies components that can be used as "rubber stamps" to paint the cells in a JList.

ViewJFrameRegisteredImages.MouseClickAdapter - Class in gov.nih.mipav.view

As an extension of MouseAdapter, this class merely responds on clicked list events.

ViewJFrameRegistration - Class in gov.nih.mipav.view

ViewJFrameRegistration is called in ViewJFrameImage.

ViewJFrameRegistration(ModelImage, ModelImage, ModelLUT, ModelLUT) - Constructor for class gov.nih.mipav.view.ViewJFrameRegistration

Makes a frame of the manually registered image.

ViewJFrameRegistration(ModelImage, ModelLUT) - Constructor for class gov.nih.mipav.view.ViewJFrameRegistration

Makes a frame of the manually registered image.

ViewJFrameRegistration.JDialogIncrement - Class in gov.nih.mipav.view

Class for the two dialogs for incrementing - the pixel increment dialog and the degree increment dialog.

ViewJFrameRegistrationTool - Class in gov.nih.mipav.view

ViewJFrameRegistrationTool is called in ViewJFrameImage.

ViewJFrameRegistrationTool(ModelImage, ModelImage, ModelStorageBase, ModelStorageBase) - Constructor for class gov.nih.mipav.view.ViewJFrameRegistrationTool

Makes a frame of the manually registered image.

ViewJFrameRegistrationTool.JDialogIncrement - Class in gov.nih.mipav.view

Class for the two dialogs for incrementing - the pixel increment dialog and the degree increment dialog.

ViewJFrameRenderCamera - Class in gov.nih.mipav.view.renderer.J3D

This class builds a "light box" view of a 3D or 4D dataset.

ViewJFrameRenderCamera(ModelImage, RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Builds the initial lightbox view.

ViewJFrameTriImage - Class in gov.nih.mipav.view

This program works with 3D and 4D images.

ViewJFrameTriImage(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.ViewJFrameTriImage

Creates a JFrameBase without calling gui initialization, init() must be called after pre-processing has completed.

ViewJFrameTriImage(ModelImage, ModelLUT, ModelImage, ModelLUT, ViewControlsImage, ViewJFrameImage) - Constructor for class gov.nih.mipav.view.ViewJFrameTriImage

Make a frame and puts an image component into it.

ViewJFrameTriImage(ModelImage, ModelLUT, ModelRGB, ModelImage, ModelLUT, ModelRGB, ViewControlsImage, ViewJFrameImage) - Constructor for class gov.nih.mipav.view.ViewJFrameTriImage

ViewJFrameTriImage.OkColorListener - Class in gov.nih.mipav.view

Listener to pass to JColorChooser when user wants to change the color of the paint.

ViewJFrameTriImage.PaintBoxRenderer - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJFrameVolumeView - Class in gov.nih.mipav.view.renderer.J3D

The volume view frame of the visualization.

ViewJFrameVolumeView(ModelImage, ModelLUT, ModelRGB, ModelImage, ModelLUT, ModelRGB, int, int, JDialogVolViewResample) - Constructor for class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Make a volume rendering frame, which contains the toolbars on the top, control panel on the left, the volume rendering panel on the right, and the three orthogonal view ( axial, sagittal, coronal, views) on the bottom right.

ViewJFrameVolumeView.TabbedItem - Class in gov.nih.mipav.view.renderer.J3D

Item to hold tab name and corresponding panel.

ViewJPanelHistoLUT - Class in gov.nih.mipav.view

Panel containing the histogram component (the graph) and the lut component (the gradient vertical bar).

ViewJPanelHistoLUT(HistoLUTParent, ModelImage, ModelLUT, ModelHistogram) - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT

Deprecated.

ViewJPanelHistoLUT(HistoLUTParent, ModelImage, ModelRGB, ModelHistogram) - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT

Deprecated.

ViewJPanelHistoLUT(HistoLUTParent, ModelImage, ModelStorageBase, ModelHistogram) - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT

Create this panel.

ViewJPanelHistoLUT.CancelColorListener - Class in gov.nih.mipav.view

Notice when the user cancels the color chooser dialog.

ViewJPanelHistoLUT.OkColorListener - Class in gov.nih.mipav.view

Pick up the selected color and change the image border color.

ViewJPanelLUT - Class in gov.nih.mipav.view

Deprecated.

ViewJPanelLUT(ViewJFrameHistoLUT) - Constructor for class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

ViewJPopupPlugin - Class in gov.nih.mipav.view

Pop-up menu for uninstalling a plugin.

ViewJPopupPlugin() - Constructor for class gov.nih.mipav.view.ViewJPopupPlugin

Creates a new ViewJPopupVOI object.

ViewJPopupPt - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJPopupPt(VOIHandlerInterface) - Constructor for class gov.nih.mipav.view.ViewJPopupPt

Creates a new ViewJPopupPt object.

ViewJPopupVOI - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewJPopupVOI(VOIHandlerInterface) - Constructor for class gov.nih.mipav.view.ViewJPopupVOI

Creates a new ViewJPopupVOI object.

ViewJPopupVOI(VOIHandlerInterface, JFrame, VOIBase) - Constructor for class gov.nih.mipav.view.ViewJPopupVOI

Creates a new ViewJPopupVOI object.

ViewJProgressBar - Class in gov.nih.mipav.view

Progress bar used everywhere for displaying to the user how long the current process is going to take.

ViewJProgressBar(String, String, int, int, boolean) - Constructor for class gov.nih.mipav.view.ViewJProgressBar

Creates a new ViewJProgressBar object.

ViewJProgressBar(String, String, int, int, boolean, ActionListener, WindowListener) - Constructor for class gov.nih.mipav.view.ViewJProgressBar

Creates a new progress bar with the given title, message, and min and max.

ViewJProgressBar(String, String, int, int, boolean, ActionListener, WindowListener, boolean) - Constructor for class gov.nih.mipav.view.ViewJProgressBar

Creates a new progress bar with the given title, message, and min and max.

ViewJProgressBarMulti - Class in gov.nih.mipav.view

Extension of ViewJProgressBar, ViewJProgressBarMulti is used to keep track of multiple algorithms or threads at a single time.

ViewJProgressBarMulti(String, boolean, ActionListener, WindowListener) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti

Constructor to start building the frame.

ViewJProgressBarMulti.AlgoContainer - Class in gov.nih.mipav.view

A container class that holds all the information to correctly draw each progress bar.

ViewJProgressBarMulti.Linking - Class in gov.nih.mipav.view

Very basic structure to update determine which algorithm is linked, and over what range.

ViewJSimpleProgressBar - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview

Wraps the ViewJProgressBar instance which allows an arbitrary minimum and maximum value to be specified for the ends of the progress bar.

ViewJSimpleProgressBar(String, String) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ViewJSimpleProgressBar

Create a collection of controls for displaying progress.

ViewJSlider - Class in gov.nih.mipav.view

This class extends Java's JSlider to give basic solutions to common slider needs in image processing tasks.

ViewJSlider() - Constructor for class gov.nih.mipav.view.ViewJSlider

Default constructor

ViewJSlider(String) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type.

ViewJSlider(String, int) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type, but the orientation is explicitly specified.

ViewJSlider(String, int, int) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type, but the min and max are explicitly to create a Boundary Range model.

ViewJSlider(String, int, int, int) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type, but the min and max are explicitly to create a Boundary Range model.

ViewJSlider(String, int, int, int, int) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type, but the min and max are explicitly to create a Boundary Range model.

ViewJSlider(String, BoundedRangeModel) - Constructor for class gov.nih.mipav.view.ViewJSlider

Creates a horizontal slider with the range and initial value specified by type, but the range model is explicitly specified.

ViewJSlider.SliderType - Enum in gov.nih.mipav.view

ViewJSlider.ViewJSliderResizeTool - Class in gov.nih.mipav.view

This class watches for GUI events that require slider marks to be reset.

ViewJSliderResizeTool() - Constructor for class gov.nih.mipav.view.ViewJSlider.ViewJSliderResizeTool

viewList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse

View list of the mouse recorder display list.

viewList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

View list of the mouse recorder display list.

viewMenu - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

ViewMenuBar - Class in gov.nih.mipav.view

Build the menus for an image loaded into MIPAV.

ViewMenuBar(ViewMenuBuilder) - Constructor for class gov.nih.mipav.view.ViewMenuBar

Set up the menu bar builder.

ViewMenuBuilder - Class in gov.nih.mipav.view

This class provides a number of helper methods for building and manipulating menus.

ViewMenuBuilder(ActionListener) - Constructor for class gov.nih.mipav.view.ViewMenuBuilder

Sets frame to add menus to, and initializes menu item vector.

ViewMenuBuilder.MenuDragOp - Class in gov.nih.mipav.view

Class for listening to dragging events within a menu.

ViewMenuBuilder.MenuDragOp.MenuMouse - Class in gov.nih.mipav.view

Class for listening to mouse events after a candidate menu is being dragged.

ViewMenuBuilder.MipavMenuItem - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewMenuBuilder.QuickList - Class in gov.nih.mipav.view

QuickList class uses Preferences to build a list of the most recently opened images. the frame is passed in for purposes of ActionListener The QuickList is stored as JMenuItems in a Vector that can be retrieved.

ViewOpenFileUI - Class in gov.nih.mipav.view

Opens an image file by calling FileIO.readImage and puts it into an image frame.

ViewOpenFileUI(boolean) - Constructor for class gov.nih.mipav.view.ViewOpenFileUI

Creates the way to open and verify files before they are loaded by the FileIO.

ViewOpenFrameInterface - Interface in gov.nih.mipav.view

Simple interface to allow JDialogs to open up a new frame of the same type as was used to create the dialog This allows stand-alone plugins that extend ViewJFrameImage to instantiate a new frame of the same type.

ViewOpenImageSequence - Class in gov.nih.mipav.view

The purpose of this class is to present the user with a window enabling him/her to open a sequence of TIFF files based on timepoint-channel-slice ordering.

ViewOpenImageSequence() - Constructor for class gov.nih.mipav.view.ViewOpenImageSequence

Creates a new ViewOpenImageSequence object.

ViewOpenPaintUI - Class in gov.nih.mipav.view

ViewOpenPaintUI() - Constructor for class gov.nih.mipav.view.ViewOpenPaintUI

Constructor to allow user to open a file.

ViewOpenVOIUI - Class in gov.nih.mipav.view

User interface to open a VOI.

ViewOpenVOIUI() - Constructor for class gov.nih.mipav.view.ViewOpenVOIUI

Constructor to allow user to open a file.

viewPanel - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

View dialog associated with surface plotter or renderer.

viewPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Control panel for the surface renderer.

viewPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

DOCUMENT ME!

viewPanel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Panel for switching between radiological and neurological viewing conventions.

viewPoint - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

viewportheight - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

viewPortHeight - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

viewportwidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

viewPortWidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Legend

views - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

views - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

views - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

ViewSelectableDoubleListPanel - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewSelectableDoubleListPanel(JTable, JTable) - Constructor for class gov.nih.mipav.view.ViewSelectableDoubleListPanel

Creates a new ViewSelectableDoubleListPanel object.

viewsPerSeg - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

830 views per segment.

ViewSplashScreen - Class in gov.nih.mipav.view

Shows the MIPAV splash screen until the user clicks the image or a few seconds (4 currently).

ViewSplashScreen() - Constructor for class gov.nih.mipav.view.ViewSplashScreen

Setup and display the splash screen.

ViewTableModel - Class in gov.nih.mipav.view

This is a simple class that creates a DefaultTableModel with uneditable cells.

ViewTableModel() - Constructor for class gov.nih.mipav.view.ViewTableModel

Calls super constructor.

ViewTableModel(Object[], int) - Constructor for class gov.nih.mipav.view.ViewTableModel

Constructs a new table model with the given column names and row count.

viewTextureButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay

Button group for projections.

viewTextureButtonGroup - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox

Button group for projections.

viewTextureButtonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Button group for projections.

viewToModel - Variable in class gov.nih.mipav.model.structures.TableSorter

DOCUMENT ME!

viewToolBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

The top one render view switch toolbar.

viewToolBar - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

The top one render view switch toolbar.

ViewToolBarBuilder - Class in gov.nih.mipav.view

Builds the GUI toolbars for the user interface.

ViewToolBarBuilder(Object) - Constructor for class gov.nih.mipav.view.ViewToolBarBuilder

Sets the UI.

ViewToolBarBuilder.JScriptToolBar - Class in gov.nih.mipav.view

Class used to indicate on the toolbar whether a script is being recorded.

ViewToolBarBuilder.PaintBoxRenderer - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewToolBarBuilder.PopupListener - Class in gov.nih.mipav.view

DOCUMENT ME!

ViewToolBarBuilder.VOIColorButton - Class in gov.nih.mipav.view

viewType - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

ViewUserInterface - Class in gov.nih.mipav.view

This class is the _glue_ keeps a record of the present structure of the application.

ViewUserInterface() - Constructor for class gov.nih.mipav.view.ViewUserInterface

Constructs main UI frame.

ViewUserInterface(boolean) - Constructor for class gov.nih.mipav.view.ViewUserInterface

Constructs main UI frame.

ViewUserInterface.DicomQueryListener - Class in gov.nih.mipav.view

ViewUserInterface.ImageTransferHandler - Class in gov.nih.mipav.view

Handles drag and drop events to the main mipav gui.

ViewUserInterface.MemoryUsageUpdater - Class in gov.nih.mipav.view

ViewUserInterface.OpenFileInfo - Class in gov.nih.mipav.view

Stores file name and switch for multifile.

ViewVOIVector - Class in gov.nih.mipav.view

A simple class that extends Vector mostly to clean-up syntax access to VOI info. in ViewComponentEditImage ((VOI)(VOIs.elementAt(i))).isActive() would be a good example can be re-written as as: VOIs.VOIAt(i).isActive()

ViewVOIVector() - Constructor for class gov.nih.mipav.view.ViewVOIVector

Constructs an empty vector so that its internal data array has size 10 and its standard capacity increment is zero.

ViewVOIVector(int) - Constructor for class gov.nih.mipav.view.ViewVOIVector

Constructs an empty vector with the specified initial capacity and with its capacity increment equal to zero.

vif - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vifp() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

vifp_mean - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vifsub_est_M(Vector<double[][]>, Vector<double[][]>, Vector<double[][]>, Vector<double[][]>) - Method in class gov.nih.mipav.model.algorithms.ImageQuality

vifvec() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

vIndex - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

virt_barray_list - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr

virt_sarray_list - Variable in class gov.nih.mipav.model.file.libjpeg.my_memory_mgr

VisCrossProduct(CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisCrossProduct(CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

VisCrossProduct(CVisDVector, CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisCrossProduct(CVisDVector, CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector

VisDMatrixLeastSquares(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixLeastSquares(CVisDMatrix, CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixLeastSquares(CVisDMatrix, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixLeastSquares(CVisDMatrix, CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixLLS(CVisDMatrix, CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSolve(CVisDMatrix, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSolve(CVisDMatrix, CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSolveSPD(CVisDMatrix, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSolveSPD(CVisDMatrix, CVisDVector, CVisDVector, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSqrtInverse(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSqrtInverse(CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSVD(CVisDMatrix, CVisDVector, CVisDMatrix, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSVD(CVisDMatrix, CVisDVector, CVisDMatrix, CVisDMatrix, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisDMatrixSymmetricEigen(CVisDMatrix, CVisDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA

Perform symmetric eigen analysis.

VisDMatrixSymmetricEigen(CVisDMatrix, CVisDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg

Symmetric eigen analysis

VisDMatrixSymmetricEigen(CVisDMatrix, CVisDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

VisGaussJordanSolveDMatrix(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

visibility_clustering_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverOptions

visibility_clustering_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.PreconditionerOptions

visibility_clustering_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions

visibility_clustering_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary

VisibilityClusteringType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType

VisibilityTestNoEBlocks() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

VisibilityTestSimpleMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

visible - Variable in class gov.nih.mipav.model.structures.VOI

If true the VOI is visible.

visibleBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Check box for whether or not the image should be visible.

visited - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge

visited - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge

visited - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge

VISITED - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

VisOuterProduct(CVisDVector, CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

visRect - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Visible rectangle to draw topped.

VISTA - Static variable in class gov.nih.mipav.model.file.FileUtility

Vista file extension .v

vistaParamTextfields - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

array list of text fields

VISUAL_INFORMATION_FIDELITY - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

visualization - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

visualization - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

VISUALIZATION - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

vkrinfo - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

vkrinfo_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.vkrinfo_t

vl_aib(int[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_aib_calculate_information(AgglomerativeInformationBottleneck.VlAIB, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_delete(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_get_costs(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_get_parents(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_get_verbosity(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_aib_merge_nodes(AgglomerativeInformationBottleneck.VlAIB, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_min_beta(AgglomerativeInformationBottleneck.VlAIB, int[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_new(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_new_nodelist(int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_new_Pc(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_new_Px(double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_normalize_P(double[][]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_process(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aib_set_verbosity(AgglomerativeInformationBottleneck.VlAIB, int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_aib_update_beta(AgglomerativeInformationBottleneck.VlAIB) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

------------------------------------------------------------------

vl_aibcut(int[], int[], Vector<Integer>, int[], int) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_aibcuthist(int[], int[], String) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_aibcutpush(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

function y = vl_aibcutpush(map, x) % VL_AIBCUTPUSH Quantize based on VL_AIB cut % Y = VL_AIBCUTPUSH(MAP, X) maps the data X to elements of the AIB % cut specified by MAP

vl_aibhist(int[], double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

% VL_AIBHIST Compute histogram over VL_AIB tree % H = VL_AIBHIST(PARENTS, DATA) computes the histogram of the data % points DATA on the VL_AIB tree defined by PARENTS.

VL_COVDET_AA_ACCURATE_SMOOTHING - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_CONVERGENCE_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_MAX_ANISOTROPY - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_MAX_NUM_ITERATIONS - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_PATCH_EXTENT - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_PATCH_RESOLUTION - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_RELATIVE_DERIVATIVE_SIGMA - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_AA_RELATIVE_INTEGRATION_SIGMA - Variable in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_append_feature(Covdet.VlCovDet, Covdet.VlCovDetFeature) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_delete(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_DESC_LIOP - gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

VL_COVDET_DESC_NONE - gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

VL_COVDET_DESC_PATCH - gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

VL_COVDET_DESC_SIFT - gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

vl_covdet_detect(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_DOG_DEF_EDGE_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_DOG_DEF_PEAK_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_drop_features_outside(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_affine_shape(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_affine_shape_for_frame(Covdet.VlCovDet, Covdet.VlFrameOrientedEllipse, Covdet.VlFrameOrientedEllipse) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_laplacian_scales(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_laplacian_scales_for_frame(Covdet.VlCovDet, int[], Covdet.VlFrameOrientedEllipse) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_orientations(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_orientations_for_frame(Covdet.VlCovDet, int[], Covdet.VlFrameOrientedEllipse) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_patch_for_frame(Covdet.VlCovDet, float[], int, double, double, Covdet.VlFrameOrientedEllipse) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_extract_patch_helper(Covdet.VlCovDet, double[], double[], float[], int, double, double, double[], double[], double, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_aa_accurate_smoothing(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_allow_padded_warping(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_base_scale(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_css(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_edge_threshold(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_features(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_first_octave(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_gss(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_laplacian_peak_threshold(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_laplacian_scales_statistics(Covdet.VlCovDet, int[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_max_num_orientations(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_non_extrema_suppression_threshold(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_num_features(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_num_non_extrema_suppressed(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_num_octaves(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_octave_resolution(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_peak_threshold(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_get_transposed(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_GSS_BASE_SCALE - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_HARRIS_DEF_EDGE_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_HARRIS_DEF_PEAK_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_HESSIAN_DEF_EDGE_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_HESSIAN_DEF_PEAK_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_LAP_DEF_PEAK_THRESHOLD - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_LAP_NUM_LEVELS - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_LAP_PATCH_RESOLUTION - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_MAX_NUM_LAPLACIAN_SCALES - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_MAX_NUM_ORIENTATIONS - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_METHOD_DOG - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VL_COVDET_METHOD_HARRIS_LAPLACE - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VL_COVDET_METHOD_HESSIAN - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VL_COVDET_METHOD_HESSIAN_LAPLACE - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VL_COVDET_METHOD_MULTISCALE_HARRIS - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VL_COVDET_METHOD_MULTISCALE_HESSIAN - gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

vl_covdet_new(Covdet.VlCovDetMethod) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_OR_ADDITIONAL_PEAKS_RELATIVE_SIZE - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_COVDET_OR_NUM_ORIENTATION_HISTOGAM_BINS - Variable in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_put_image(Covdet.VlCovDet, float[], int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_reset(Covdet.VlCovDet) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_aa_accurate_smoothing(Covdet.VlCovDet, boolean) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_allow_padded_warping(Covdet.VlCovDet, boolean) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_base_scale(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_edge_threshold(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_first_octave(Covdet.VlCovDet, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_laplacian_peak_threshold(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_max_num_orientations(Covdet.VlCovDet, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_non_extrema_suppression_threshold(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_num_octaves(Covdet.VlCovDet, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_octave_resolution(Covdet.VlCovDet, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_peak_threshold(Covdet.VlCovDet, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_covdet_set_transposed(Covdet.VlCovDet, boolean) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_demo_aib() - Method in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck

vl_demo_hog() - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

VL_EPSILON_D - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_EPSILON_D - Variable in class gov.nih.mipav.model.algorithms.SIFT

VL_EPSILON_D - Variable in class gov.nih.mipav.model.algorithms.SVM

VL_EPSILON_F - Variable in class gov.nih.mipav.model.algorithms.SIFT

< @brief Transpose result.

VL_ERR_ALLOC - Variable in class gov.nih.mipav.model.algorithms.Covdet

< Buffer overflow error

VL_ERR_ALLOC - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Buffer overflow error

VL_ERR_BAD_ARG - Variable in class gov.nih.mipav.model.algorithms.Covdet

< Resource allocation error

VL_ERR_BAD_ARG - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Resource allocation error

VL_ERR_EOF - Variable in class gov.nih.mipav.model.algorithms.Covdet

< Input/output error

VL_ERR_EOF - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Input/output error

VL_ERR_IO - Variable in class gov.nih.mipav.model.algorithms.Covdet

< Bad argument or illegal data error

VL_ERR_IO - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Bad argument or illegal data error

VL_ERR_OK - Variable in class gov.nih.mipav.model.algorithms.Covdet

------------------------------------------------------------------

VL_ERR_OK - Variable in class gov.nih.mipav.model.algorithms.SIFT

VL_ERR_OVERFLOW - Variable in class gov.nih.mipav.model.algorithms.Covdet

< No error

VL_ERR_OVERFLOW - Variable in class gov.nih.mipav.model.algorithms.SIFT

< No error

VL_ERR_PGM_INV_DATA - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Invalid PGM meta section.

VL_ERR_PGM_INV_HEAD - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Binary protocol

VL_ERR_PGM_INV_META - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Invalid PGM header section.

VL_ERR_PGM_IO - Variable in class gov.nih.mipav.model.algorithms.SIFT

< Invalid PGM data section.

vl_file_meta_close(SIFT.VlFileMeta) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_file_meta_get_double(int, RandomAccessFile, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_file_meta_open(SIFT.VlFileMeta, String, String, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_file_meta_parse(SIFT.VlFileMeta, String) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_file_meta_put_double(int, RandomAccessFile, double) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_file_meta_put_uint8(int, RandomAccessFile, byte) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_find_local_extrema_2(int[], int[], int[], float[], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_find_local_extrema_3(int[], int[], int[], float[], int, int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_FRAMETYPE_DISC - gov.nih.mipav.model.algorithms.Covdet.VlFrameType

VL_FRAMETYPE_ELLIPSE - gov.nih.mipav.model.algorithms.Covdet.VlFrameType

< An oriented disc.

VL_FRAMETYPE_NUM - gov.nih.mipav.model.algorithms.Covdet.VlFrameType

< An oriented ellipse.

VL_FRAMETYPE_ORIENTED_DISC - gov.nih.mipav.model.algorithms.Covdet.VlFrameType

< A disc.

VL_FRAMETYPE_ORIENTED_ELLIPSE - gov.nih.mipav.model.algorithms.Covdet.VlFrameType

< An ellipse.

vl_gaussian_elimination(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_get_frame_size(Covdet.VlFrameType) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_get_frame_type(boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_hog(float[][][], int, boolean, HistogramOfOrientedGradients.VlHogVariant, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog(float[][], int, boolean, HistogramOfOrientedGradients.VlHogVariant, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_delete(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_extract(HistogramOfOrientedGradients.VlHog, float[]) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_dimension(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_glyph_size(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_height(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_permutation(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_use_bilinear_orientation_assignments(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_get_width(HistogramOfOrientedGradients.VlHog) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_new(HistogramOfOrientedGradients.VlHogVariant, int, boolean) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_permutation(HistogramOfOrientedGradients.VlHogVariant, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_prepare_buffers(HistogramOfOrientedGradients.VlHog, int, int, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_put_image(HistogramOfOrientedGradients.VlHog, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_put_polar_field(HistogramOfOrientedGradients.VlHog, float[], float[], boolean, int, int, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_render(float[][][], HistogramOfOrientedGradients.VlHogVariant, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_render(HistogramOfOrientedGradients.VlHog, float[], float[], int, int) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_hog_set_use_bilinear_orientation_assignments(HistogramOfOrientedGradients.VlHog, boolean) - Method in class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients

vl_homogeneouskernelmap_delete(SVM.VlHomogeneousKernelMap) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_homogeneouskernelmap_evaluate(SVM.VlHomogeneousKernelMap, double[], int, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_homogeneouskernelmap_get_dimension(SVM.VlHomogeneousKernelMap) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_homogeneouskernelmap_get_smooth_spectrum(SVM.VlHomogeneousKernelMap, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_homogeneouskernelmap_get_spectrum(SVM.VlHomogeneousKernelMap, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_homogeneouskernelmap_new(SVM.VlHomogeneousKernelType, double, int, double, SVM.VlHomogeneousKernelMapWindowType) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_imconvcol_vf(float[], int, int, float[], int, int, int, int, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_imconvcol_vf(float[], int, int, float[], int, int, int, int, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_imgradient_f(float[], float[], int, int, float[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_imgradient_polar_f(float[], float[], int, int, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_imsmooth_f(float[], int, int, float[], int, int, int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_imwbackwardmx(int[], int[], double[], double[][], double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_imwbackwardmx(int[], int[], float[], double[][], double[][], int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_lapack_dlasv2(double[], double[], double[], double[], double[], double[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_liop(float[][][], int, int, float, float) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liop(float[][], int, int, float, float) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_delete(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_get_dimension(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_get_intensity_threshold(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_get_neighbourhood_radius(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_get_num_neighbours(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_get_num_spatial_bins(LocalIntensityOrderPattern.VlLiopDesc) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_new(int, int, float, int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_new_basic(int) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_process(LocalIntensityOrderPattern.VlLiopDesc, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_liopdesc_set_intensity_threshold(LocalIntensityOrderPattern.VlLiopDesc, float) - Method in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern

vl_mod_2pi(double) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_mod_2pi_f(float) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_mser_delete(AlgorithmMSER.VlMserFilt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER

Delete MSER filter This function releases the MSER filter and all its resources

vl_mser_ell_fit(AlgorithmMSER.VlMserFilt) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER

vl_mser_new(int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER

VL_MSER_PIX_MAXVAL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER

vl_mser_process(AlgorithmMSER.VlMserFilt, short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER

VL_MSER_VOID_NODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER

VL_PAD_BY_CONTINUITY - Variable in class gov.nih.mipav.model.algorithms.Covdet

< @brief Pad with zeroes.

VL_PAD_BY_CONTINUITY - Variable in class gov.nih.mipav.model.algorithms.SIFT

< @brief Pad with zeroes.

VL_PAD_BY_ZERO - Variable in class gov.nih.mipav.model.algorithms.Covdet

VL_PAD_BY_ZERO - Variable in class gov.nih.mipav.model.algorithms.SIFT

< ::fast_expn table /** @name Image convolution flags

VL_PAD_MASK - Variable in class gov.nih.mipav.model.algorithms.Covdet

< @brief Pad by continuity.

VL_PAD_MASK - Variable in class gov.nih.mipav.model.algorithms.SIFT

< @brief Pad by continuity.

vl_pgm_extract_data(RandomAccessFile, SIFT.VlPgmImage, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_pgm_extract_head(RandomAccessFile, SIFT.VlPgmImage) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_pgm_get_bpp(SIFT.VlPgmImage) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_pgm_get_npixels(SIFT.VlPgmImage) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_pgm_insert(RandomAccessFile, SIFT.VlPgmImage, byte[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

VL_PROT_ASCII - Variable in class gov.nih.mipav.model.algorithms.SIFT

< no protocol

VL_PROT_BINARY - Variable in class gov.nih.mipav.model.algorithms.SIFT

< ASCII protocol

VL_PROT_NONE - Variable in class gov.nih.mipav.model.algorithms.SIFT

< unknown protocol

VL_PROT_UNKNOWN - Variable in class gov.nih.mipav.model.algorithms.SIFT

< End-of-file or end-of-sequence error

vl_rand_permute_indexes(Random, int[], int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_refine_local_extreum_2(Covdet.VlCovDetExtremum2, float[], int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_refine_local_extreum_3(Covdet.VlCovDetExtremum3, float[], int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_delete(Covdet.VlScaleSpace) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_get_default_geometry(int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_get_geometry(Covdet.VlScaleSpace) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_get_level(Covdet.VlScaleSpace, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_get_level_sigma(Covdet.VlScaleSpace, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

------------------------------------------------------------------

vl_scalespace_get_octave_geometry(Covdet.VlScaleSpace, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespace_new_with_geometry(Covdet.VlScaleSpaceGeometry) - Method in class gov.nih.mipav.model.algorithms.Covdet

------------------------------------------------------------------

vl_scalespace_put_image(Covdet.VlScaleSpace, float[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_scalespacegeometry_is_equal(Covdet.VlScaleSpaceGeometry, Covdet.VlScaleSpaceGeometry) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_SHIFT_LEFT(int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

VL_SHIFT_LEFT(int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT

VL_SIFT_BILINEAR_ORIENTATIONS - Variable in class gov.nih.mipav.model.algorithms.SIFT

vl_sift_calc_keypoint_descriptor(SIFT.VlSiftFilt, float[], SIFT.VlSiftKeypoint, double) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_calc_keypoint_orientations(SIFT.VlSiftFilt, double[], SIFT.VlSiftKeypoint) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_delete(SIFT.VlSiftFilt) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_detect(SIFT.VlSiftFilt) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_get_octave(SIFT.VlSiftFilt, int, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_keypoint_init(SIFT.VlSiftFilt, SIFT.VlSiftKeypoint, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_sift_new(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_sift_process_first_octave(SIFT.VlSiftFilt, float[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

vl_sift_process_next_octave(SIFT.VlSiftFilt) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_solve_linear_system_2(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_solve_linear_system_3(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_string_basename(String, int, String, int, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_string_copy_sub(String, int, String, int, int, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_string_parse_protocol(String, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_string_protocol_name(int) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_string_replace_wildcard(String, int, String, String, String, String, int[]) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

vl_svd2(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet

vl_svm_delete(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_bias(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_bias_learning_rate(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_bias_multiplier(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_diagnostic_frequency(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_dimension(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_epsilon(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_lambda(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_max_num_iterations(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_model(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_num_data(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_scores(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_solver(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_get_statistics(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge_conjugate_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge_dca_update(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge_loss_derivative(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge2_conjugate_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge2_dca_update(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge2_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_hinge2_loss_derivative(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l1_conjugate_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l1_dca_update(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l1_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l1_loss_derivative(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l2_conjugate_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l2_dca_update(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l2_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_l2_loss_derivative(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_logistic_conjugate_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_logistic_dca_update(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_logistic_loss(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_logistic_loss_derivative(double, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_new_with_abstract_data(SVM.VlSvmSolverType, SVM.VlSvmDataset, int, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_new_with_dataset(SVM.VlSvmSolverType, SVM.VlSvmDataset, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_bias(SVM.VlSvm, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_bias_learning_rate(SVM.VlSvm, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_bias_multiplier(SVM.VlSvm, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_conjugate_loss_function(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_data_functions(SVM.VlSvm, int, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_dca_update_function(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_diagnostic_frequency(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_epsilon(SVM.VlSvm, double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_iteration_number(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_loss(SVM.VlSvm, SVM.VlSvmLossType) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_loss_derivative_function(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_loss_function(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_max_num_iterations(SVM.VlSvm, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_model(SVM.VlSvm, double[]) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_set_weights(SVM.VlSvm, double[]) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svm_train(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_accumulate(SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_accumulate_hom(SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_delete(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_get_accumulate_function(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_get_dimension(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_get_homogeneous_kernel_map(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_get_inner_product_function(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_get_num_data(SVM.VlSvmDataset) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_inner_product(SVM.VlSvmDataset, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_inner_product_hom(SVM.VlSvmDataset, int, double[]) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_new(double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_new(double[], int, int, SVM.VlHomogeneousKernelMap) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmdataset_set_homogeneous_kernel_map(SVM.VlSvmDataset, SVM.VlHomogeneousKernelMap) - Method in class gov.nih.mipav.model.algorithms.SVM

vl_svmtrain(double[], double[], double[], double[][], SVM.VlSvmDataset, double[], double, SVM.VlSvmSolverType, double, double, int, double, SVM.VlSvmLossType, boolean, double[], double, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SVM

VL_TRANSPOSE - Variable in class gov.nih.mipav.model.algorithms.Covdet

< @brief Padding field selector.

VL_TRANSPOSE - Variable in class gov.nih.mipav.model.algorithms.SIFT

< @brief Padding field selector.

VL1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VL1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

VL2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VL2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

VL3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VL3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

VlAIB() - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB

VlCovDet() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDet

vlCovDetDescriptorType() - Constructor for enum gov.nih.mipav.model.algorithms.Covdet.vlCovDetDescriptorType

VlCovDetExtremum2() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2

VlCovDetExtremum3() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

VlCovDetFeature() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeature

VlCovDetFeatureLaplacianScale() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureLaplacianScale

VlCovDetFeatureOrientation() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation

VlCovDetMethod() - Constructor for enum gov.nih.mipav.model.algorithms.Covdet.VlCovDetMethod

VlFileMeta(boolean, String, int[], String, File) - Constructor for class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta

< Current file stream

VlFrameDisc() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlFrameDisc

VlFrameEllipse() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse

VlFrameOrientedDisc() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc

VlFrameOrientedEllipse() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse

VlFrameType() - Constructor for enum gov.nih.mipav.model.algorithms.Covdet.VlFrameType

VlHog() - Constructor for class gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHog

VlHogVariant() - Constructor for enum gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHogVariant

VlHogVariantDalalTriggs - gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHogVariant

VlHogVariantUoctti - gov.nih.mipav.model.algorithms.HistogramOfOrientedGradients.VlHogVariant

VlHomogeneousKernelChi2 - gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

< intersection kernel

VlHomogeneousKernelIntersection - gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

VlHomogeneousKernelJS - gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

< Chi2 kernel

VlHomogeneousKernelMap() - Constructor for class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap

VlHomogeneousKernelMapWindowRectangular - gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMapWindowType

< uniform window

VlHomogeneousKernelMapWindowType() - Constructor for enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMapWindowType

VlHomogeneousKernelMapWindowUniform - gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMapWindowType

VlHomogeneousKernelType() - Constructor for enum gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelType

VLin1_Serial(double, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

VLin2_Serial(double, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

VlLiopDesc() - Constructor for class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.VlLiopDesc

VlMserExtrReg() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg

VlMserFilt() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt

VlMserReg() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg

VlMserStats() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserStats

VlPgmImage() - Constructor for class gov.nih.mipav.model.algorithms.SIFT.VlPgmImage

< is RAW format?

VlScaleSpace() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpace

VlScaleSpaceGeometry() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry

VlScaleSpaceOctaveGeometry() - Constructor for class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceOctaveGeometry

VlSiftFilt() - Constructor for class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< GSS gradient data octave.

VlSiftKeypoint() - Constructor for class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint

< scale.

VlSvm() - Constructor for class gov.nih.mipav.model.algorithms.SVM.VlSvm

VlSvmDataset() - Constructor for class gov.nih.mipav.model.algorithms.SVM.VlSvmDataset

VlSvmLossHinge - gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

VlSvmLossHinge2 - gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

< Standard hinge loss.

VlSvmLossL1 - gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

< Hinge loss squared.

VlSvmLossL2 - gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

< L1 loss.

VlSvmLossLogistic - gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

< L2 loss.

VlSvmLossType() - Constructor for enum gov.nih.mipav.model.algorithms.SVM.VlSvmLossType

VlSvmSolverNone - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

VlSvmSolverSdca - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

< SGD algorithm (@ref svm-sgd).

VlSvmSolverSgd - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

< No solver (used to evaluate an SVM).

VlSvmSolverStatus() - Constructor for enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

VlSvmSolverType() - Constructor for enum gov.nih.mipav.model.algorithms.SVM.VlSvmSolverType

VlSvmStatistics() - Constructor for class gov.nih.mipav.model.algorithms.SVM.VlSvmStatistics

VlSvmStatusConverged - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

< Optimization in progress.

VlSvmStatusMaxNumIterationsReached - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

< Optimization finished because the convergence criterion was met.

VlSvmStatusTraining - gov.nih.mipav.model.algorithms.SVM.VlSvmSolverStatus

vmax - Variable in class gov.nih.mipav.model.file.FileInfoMinc

Valid image maximum value.

vmax - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

VMax - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

VMax - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

VMConfigType(String) - Constructor for enum gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType

vmFrame - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB

vmFrame - Variable in class gov.nih.mipav.model.file.FileMATLAB

vmFrame2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB

vmFrame2 - Variable in class gov.nih.mipav.model.file.FileMATLAB

vmin - Variable in class gov.nih.mipav.model.file.FileInfoMinc

Valid image minimum value.

vmin - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

VMOPTIONS - gov.nih.mipav.view.dialogs.JDialogMemoryAllocation.VMConfigType

vmoptionsExt - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

vmType - Static variable in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

vn - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh

VN() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

Vn_prime - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

vnbr_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.vnbr_t

vnbrpool - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t

VNeg_Serial(CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

Vob - gov.nih.mipav.model.file.MetadataExtractor.FileType

voi - gov.nih.mipav.model.structures.TransMatrix.DataFileV2Keys

voi - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

voi - Variable in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler

The VOI that we are building from the XML.

voi - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

The VOI that we are building from the XML.

voi - Variable in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler

The VOI that we are building from the XML.

voi - Variable in class gov.nih.mipav.model.structures.UpdateVOIEvent

DOCUMENT ME!

voi - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

voi - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

voi - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

voi - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

voi - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

The selected VOI when the VOIStats dialogue was created

voi - Variable in class gov.nih.mipav.view.ViewJComponentFunct

DOCUMENT ME!

voi - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

voi - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

Voi - gov.nih.mipav.view.Argument.InstanceArgument

VOI - Class in gov.nih.mipav.model.structures

This the Volume Of Interest (VOI) structure.

VOI - Static variable in class gov.nih.mipav.view.ViewImageFileFilter

VOI Files (*.voi).

VOI(short, String) - Constructor for class gov.nih.mipav.model.structures.VOI

Create a VOI with the given id and name.

VOI(short, String, int, float) - Constructor for class gov.nih.mipav.model.structures.VOI

Constructs a Volume of Interest (VOI).

VOI(short, String, int, float, int) - Constructor for class gov.nih.mipav.model.structures.VOI

Constructs a Volume of Interest (VOI).

VOI(VOI) - Constructor for class gov.nih.mipav.model.structures.VOI

Copies the VOI into a new VOI object.

VOI_3D - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Indicates the cursor is in 3D voi drawing mode while in tri-planar view

VOI_DROP - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

VOI_EMPTY - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

DOCUMENT ME!

VOI_FILE - Static variable in class gov.nih.mipav.model.file.FileUtility

VOI file, used to read VOIs. extension: .voi

VOI_GROUPING - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex

VOI_GROUPING - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

VOI_HEADER - Static variable in class gov.nih.mipav.model.file.FileVOI

The MIPAV XML header comment.

VOI_METHOD - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

VOI_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

VOI_METHOD - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

VOI_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface

Extract surface from VOI.

VOI_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes

Extract surface from VOI.

VOI_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

VOI Tab.

VOI_TOOLBAR - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage

VOI_TYPE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip

Denotes selected VOI should be flipped.

VOI1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

voi1

voi2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

VOI2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

voi2

VOIAt(int) - Method in class gov.nih.mipav.view.ViewVOIVector

Returns the VOI at the index.

VOIBase - Class in gov.nih.mipav.model.structures

Base which holds the functions common to both Contour, Line and Point type VOI.

VOIBase() - Constructor for class gov.nih.mipav.model.structures.VOIBase

Default Constructor.

VOIBase(boolean, boolean) - Constructor for class gov.nih.mipav.model.structures.VOIBase

Constructor sets the fixed and closed flags.

VOIBase(boolean, boolean, Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOIBase

Constructor, sets the fixed and closed flags and positions.

VOIBase(boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.structures.VOIBase

VOIBase(VOIBase) - Constructor for class gov.nih.mipav.model.structures.VOIBase

Copies the input VOIBase into a new VOIBase object.

VOIBase(VOIBase, int) - Constructor for class gov.nih.mipav.model.structures.VOIBase

Copies the input contour and changes it's slice +/-

VOIBase(VOIBase, TransMatrix) - Constructor for class gov.nih.mipav.model.structures.VOIBase

Copies the input VOIBase, transformed by the input TransMatrix.

VOIBaseVector - Class in gov.nih.mipav.model.structures

VOIBaseVector() - Constructor for class gov.nih.mipav.model.structures.VOIBaseVector

VOIBaseVector(VOI) - Constructor for class gov.nih.mipav.model.structures.VOIBaseVector

VOIBaseVector(VOI, int) - Constructor for class gov.nih.mipav.model.structures.VOIBaseVector

voiBloodRadioButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

voiButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex

VOIButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

VOICENTER - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI

voiCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

voiCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

voiCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

VOICheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

voiColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

DOCUMENT ME!

voiColorButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

VOIColorButton(int) - Constructor for class gov.nih.mipav.view.ViewToolBarBuilder.VOIColorButton

voiColorChoices - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

voiColorNames - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

voiColors - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

VOIComparator() - Constructor for class gov.nih.mipav.model.file.FileVOI.VOIComparator

VOIContour - Class in gov.nih.mipav.model.structures

This class is fundamental to the VOI class in which points are stored that describe a curve of an VOI.

VOIContour(boolean) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Construct a new closed or open VOI.

VOIContour(boolean, boolean) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Construct a new VOIContour.

VOIContour(boolean, boolean, Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Construct a new VOIContour.

VOIContour(VOIContour) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Copy Constructor.

VOIContour(VOIContour, int) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Copies the input contour and changes it's slice +/-

VOIContour(VOIContour, TransMatrix) - Constructor for class gov.nih.mipav.model.structures.VOIContour

Copies the input VOIBase, transformed by the input TransMatrix.

VOIContour.positionItem - Class in gov.nih.mipav.model.structures

VOIContour.positionLowerComparator - Class in gov.nih.mipav.model.structures

VOIContour.positionUpperComparator - Class in gov.nih.mipav.model.structures

VOIContourNode - Class in gov.nih.mipav.view

This class is used to represent a contour node in a tree.

VOIContourNode(VOIBase) - Constructor for class gov.nih.mipav.view.VOIContourNode

Creates a new VOINode object.

voiContourPane - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

DOCUMENT ME!

voiCurrent - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Labels for values of the voi trim points property

voiDialog - Variable in class gov.nih.mipav.view.JFrameHistogram

Dialog that enables the user to choose to apply the lut to the entire image, or voi regions.

voiDrawButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

voiDrawColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

DOCUMENT ME!

VOIEvent - Class in gov.nih.mipav.model.structures.event

An event from a VOI.

VOIEvent(VOI) - Constructor for class gov.nih.mipav.model.structures.event.VOIEvent

creates an event with no VOI as reference.

VOIEvent(VOI, VOIBase) - Constructor for class gov.nih.mipav.model.structures.event.VOIEvent

creates an event using the supplied VOI as reference.

VOIExtractionAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction

DOCUMENT ME!

voiFileLocation - Variable in class gov.nih.mipav.view.dialogs.ScriptVOI

VOIFrameNode - Class in gov.nih.mipav.view

This class is used to represent a frame, such as a slice number.

VOIFrameNode(Vector, int) - Constructor for class gov.nih.mipav.view.VOIFrameNode

Creates a new VOIFrameNode object.

voiGroup - Variable in class gov.nih.mipav.model.structures.VOIBase

Reference to the containing VOI object.

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

DOCUMENT ME!

VOIGroup - Variable in class gov.nih.mipav.view.ViewJFrameImage

VOIGroup - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

VOIGroup - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

A button group for all toggle buttons which change the effect of mouse usage in the image.

VOIGroupNode - Class in gov.nih.mipav.view

This class is used to represent a VOI in a tree.

VOIGroupNode(VOI) - Constructor for class gov.nih.mipav.view.VOIGroupNode

Loads a File into the tree-leaf.

VOIGroupNode(VOI, int[]) - Constructor for class gov.nih.mipav.view.VOIGroupNode

Loads a File into the tree-leaf.

VOIGroupNode(Object) - Constructor for class gov.nih.mipav.view.VOIGroupNode

Creates a new VOIGroupNode object.

VOIGroupTree - Class in gov.nih.mipav.view

wrapper class for JTree.

VOIGroupTree() - Constructor for class gov.nih.mipav.view.VOIGroupTree

creates a new JTree as a VOIGroupTree.

VOIGroupTree(VOIGroupNode) - Constructor for class gov.nih.mipav.view.VOIGroupTree

creates a new JTree as a VOIGroupTree with a DefaultMutableTreeNode.

VOIHandle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation

handle to src image's VOI

voiHandler - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold

voiHandler - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

voiHandler - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

voiHandler - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

voiHandler - Variable in class gov.nih.mipav.view.ViewJPopupPt

DOCUMENT ME!

voiHandler - Variable in class gov.nih.mipav.view.ViewJPopupVOI

DOCUMENT ME!

VOIHandlerInterface - Interface in gov.nih.mipav.view

VOIHandlerInterface.

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

voiHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

voiHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

VOIHighlighter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter

VOIHighlighter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter

VOIHighlighter() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter

voiIcon - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.TreeRenderer

DOCUMENT ME!

voiID - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

voiIDnum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

VOIIndexArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

voiIntensity1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

voiIntensity2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

VOILatticeManager - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

VOILatticeManager(VOIManagerInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager

Constructor.

VOILatticeManagerInterface - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

VOILatticeManagerInterface(VOIManagerInterfaceListener, ModelImage, ModelImage, int, boolean, ButtonGroup) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

Creates a VOIManagerInterface object.

VOIlength - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

VOILine - Class in gov.nih.mipav.model.structures

Class for line, a simple extension of VOIBase.

VOILine() - Constructor for class gov.nih.mipav.model.structures.VOILine

Default Constructor.

VOILine(VOILine) - Constructor for class gov.nih.mipav.model.structures.VOILine

Copy Constructor.

VOILine(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOILine

Constructor, sets the position of the line.

VOILink(String) - Constructor for class gov.nih.mipav.model.file.FileInfoImageXML.VOILink

Create a new VOILink with the given path.

voiList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

Keep a reference to the VOI List to turn on and off if multiple images are selected.

VOIListener - Interface in gov.nih.mipav.model.structures.event

VOIListener permits objects to listen for updates to a VOI.

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogBase

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

voiManager - Variable in class gov.nih.mipav.view.dialogs.JDialogOpacityControls

voiManager - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

voiManager - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

voiManager - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

voiManager - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

voiManager - Variable in class gov.nih.mipav.view.ViewJFrameImage

voiManager - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

voiManager - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

voiManager - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

voiManager - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

The VOI managers for each triComponent

VOIManager - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

VOIManager class performs all direct user-manipulation of VOIs.

VOIManager(VOIManagerInterface) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

Constructor.

VOIManager.ActiveTree - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

Binary search tree, modified so it will work with elements that have the same cost.

VOIManager.TreeNode - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

Tree node.

VOIManagerInterface - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

VOIManagerInterface manages all the VOI user-interaction for classes that display the ModelImage.

VOIManagerInterface(VOIManagerInterfaceListener, ModelImage, ModelImage, int, boolean, ButtonGroup) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

Creates a VOIManagerInterface object.

VOIManagerInterface.OkColorListener - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

Pick up the selected color and call method to change the color.

VOIManagerInterfaceListener - Interface in gov.nih.mipav.view.renderer.WildMagic.VOI

VOIManagerInterfaceListener interface.

voiMaximum - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Labels for values of the voi trim points property

voiMenu - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

voiMenu - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

voiMenu - Variable in class gov.nih.mipav.view.ViewJFrameImage

voiMenu - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Menu displaying VOI options

voiMenu - Variable in class gov.nih.mipav.view.ViewMenuBar

The menu listing voi commands.

voiMenuBuilder - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

voiMinimum - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Labels for values of the voi trim points property

voiModel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

The tree of VOIs, composed of an image with children VOIs

voiName - Variable in class gov.nih.mipav.view.dialogs.ScriptVOI

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ModelString

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes

voiName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes

voiName - Variable in class gov.nih.mipav.view.VOIOrientationNode

Name of parent voi

VOIName - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Name of the currently selected voi

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

voiNameHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

voiNameHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiNameHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiNameHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

voiNameHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

voiNameHashtableCg - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiNameHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiNameHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiNameHashtableCg_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiNameHashtableNathan - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

voiNameHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiNameHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiNameHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

voiNameHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

voiNameHashtableWp - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiNameHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiNameHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiNameHashtableWp_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

voiNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

VOINODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView

VOI node type, begins with VOI_EMPTY string and must be set if present before running of the script.

VOIOrientationNode - Class in gov.nih.mipav.view

This class is used to represent the orientation of a set of VOI curves.

VOIOrientationNode(String, String, Vector<VOIBase>[]) - Constructor for class gov.nih.mipav.view.VOIOrientationNode

Creates a new VOIFrameNode object.

VOIParams() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.VOIParams

voiPathRequestCountTable - Variable in class gov.nih.mipav.model.scripting.VOITable

A table containing counts of the number of VOIs which have been retrieved and registered for each image, keyed by the image placeholder variables used in the script.

voiPathTable - Variable in class gov.nih.mipav.model.scripting.VOITable

The table containing vectors of VOI path strings, keyed by the image placeholder variables used in the script.

VOIPoint - Class in gov.nih.mipav.model.structures

Class for a point VOI, a simple extension of CurveBase.

VOIPoint() - Constructor for class gov.nih.mipav.model.structures.VOIPoint

Default constructor

VOIPoint(int) - Constructor for class gov.nih.mipav.model.structures.VOIPoint

Sets the type.

VOIPoint(int, Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOIPoint

Sets the type and position.

VOIPoint(int, Vector3f) - Constructor for class gov.nih.mipav.model.structures.VOIPoint

Sets the type and position.

VOIPoint(VOIPoint) - Constructor for class gov.nih.mipav.model.structures.VOIPoint

Copy Constructor.

VOIPoints - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

VOIPolyLineSlice - Class in gov.nih.mipav.model.structures

PolyLineSlice is implemented as a list of Each VOIPoint in the list may be on a different slice of the image.

VOIPolyLineSlice() - Constructor for class gov.nih.mipav.model.structures.VOIPolyLineSlice

Default Constructor.

VOIPolyLineSlice(VOIPoint) - Constructor for class gov.nih.mipav.model.structures.VOIPolyLineSlice

Constructor sets the first VOIPoint in the polyline.

VOIPolyLineSlice(VOIPolyLineSlice) - Constructor for class gov.nih.mipav.model.structures.VOIPolyLineSlice

Copy constructor.

voiPopup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup

DOCUMENT ME!

VOIposition - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

positions (x,y) of VOI in first slice

voiProtractor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

The protractor VOI.

VOIProtractor - Class in gov.nih.mipav.model.structures

This class is fundamental to the VOI class in which points are stored that describe a Protractor VOI.

VOIProtractor() - Constructor for class gov.nih.mipav.model.structures.VOIProtractor

Default constructor.

VOIProtractor(VOIProtractor) - Constructor for class gov.nih.mipav.model.structures.VOIProtractor

Copy constructor.

VOIProtractor(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOIProtractor

Constructor, sets the position of the protractor.

voiRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

voiRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

voiRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

voiRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

voiRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

voiRedoButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

voiRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

VOIRegions - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

voiRegionsRadio - Variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

DOCUMENT ME!

voiRegionsRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

radio buttons

VOIRegionsRB - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

Non-maximal suppression for features/corners Non maxima suppression and thresholding for points generated by a feature or corner detector.

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt

VOIs

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

VOIs - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

source imag VOIs.

VOIs - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

List of files which describe VOIs attached to this image.

VOIs - Variable in class gov.nih.mipav.model.file.FileSVS

VOIs - Variable in class gov.nih.mipav.model.file.FileTiff

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

vois in image

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

VOIs - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

red, green, and blue origContrast remains constant until applyButton is pressed, restores contrast if cancelButton is pressed.

VOIs2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

DOCUMENT ME!

voiSavedFileName - Variable in class gov.nih.mipav.view.ViewJFrameBase

DOCUMENT ME!

VOISaveState - Class in gov.nih.mipav.view.renderer.WildMagic.VOI

VOISaveState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState

voiSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression

DOCUMENT ME!

voisOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

voisOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

voisOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

voisOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

voisOnly - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

VOISortItem(VOIBase, int) - Constructor for class gov.nih.mipav.model.file.FileVOI.VOISortItem

Creates a new VOISortItem object.

VOIsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

VOIsPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI

VOIStatisticalProperties - Class in gov.nih.mipav.model.structures

$Logfile: /mipav/src/gov/nih/mipav/model/structures/VOIStatisticalProperties.java $ $Revision: 4 $ $Date: 7/27/04 1:42p $

VOIStatisticalProperties() - Constructor for class gov.nih.mipav.model.structures.VOIStatisticalProperties

Creates a new VOIStatisticalProperties object.

VOIStatisticList - Interface in gov.nih.mipav.model.structures

interface to carry statistic list information. all users of VOI statistics ought to implement this interface.

voiStatsLeftPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

voiStatsPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

voiStatsRightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

panels

voiStr - Static variable in class gov.nih.mipav.model.file.FileImageXML

array of strings representing the tags under in the xml schema.

voiTable - Variable in class gov.nih.mipav.model.scripting.ScriptRunner

The table containing VOIs to be used in the script.

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train

voiTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

VOITable - Class in gov.nih.mipav.model.scripting

A table which manages paths to VOIs which should be used for specific images used within a script.

VOITable(String, Vector) - Constructor for class gov.nih.mipav.model.scripting.VOITable

Create a new VOI path table.

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext

voiTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate

voiText - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

a temporary VOIText holder which will be added to the VOIVector

VOIText - Class in gov.nih.mipav.model.structures

Title: VOI Text

VOIText() - Constructor for class gov.nih.mipav.model.structures.VOIText

default constructor.

VOIText(VOIText) - Constructor for class gov.nih.mipav.model.structures.VOIText

Copy contructor.

VOIText(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.structures.VOIText

Constructor, sets positions of the annotation.

VOIText(Vector3f) - Constructor for class gov.nih.mipav.model.structures.VOIText

VOIThicknessField - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Thickness of the currently selected voi

VOIToFileCoordinates(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

voiTree - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

The graphical representation of voiModel

voiTreePane - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

Displays the orthoganal list of VOIs in the selected ModelImage

VOITreePopup() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup

Creates a new VOITreePopup object.

VOITreeRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOITreeRenderer

VOITreeRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOITreeRenderer

VOITreeRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreeRenderer

voiTrimSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim

Sliders for setting the mask and voi trim parameters

voiUID - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

VOI ID used to set the VOI color button on a call to newVOI()

voiUndoButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder

voiUpdate - Variable in class gov.nih.mipav.model.structures.VOIVector

an instnace of the VOI update event.

voiVector - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

Holds all the VOITexts read in

voiVector - Variable in class gov.nih.mipav.model.structures.ModelImage

List of VOIs that are displayed with this image.

voiVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.SliceSetString

voiVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize

VOIVector - Class in gov.nih.mipav.model.structures

Class extends ViewVOIVector to finish cleaning up access syntax to the volumes of interest vector.

VOIVector() - Constructor for class gov.nih.mipav.model.structures.VOIVector

Constructs an empty vector so that its internal data array has size 10 and its standard capacity increment is zero.

VOIVector(int) - Constructor for class gov.nih.mipav.model.structures.VOIVector

Constructs an empty vector with the specified initial capacity and with its capacity increment equal to zero.

VOIVector(VOIVector) - Constructor for class gov.nih.mipav.model.structures.VOIVector

voiVectorA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState

voiVectorB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOISaveState

VOIVectorEvent - Class in gov.nih.mipav.model.structures.event

An event from a VOIVector.

VOIVectorEvent(ViewVOIVector) - Constructor for class gov.nih.mipav.model.structures.event.VOIVectorEvent

creates an event with no VOI as reference.

VOIVectorEvent(ViewVOIVector, VOI) - Constructor for class gov.nih.mipav.model.structures.event.VOIVectorEvent

creates an event using the supplied VOI as reference.

voiVectorFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

voiVectorFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

voiVectorFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

voiVectorFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

voiVectorFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

VOIVectorListener - Interface in gov.nih.mipav.model.structures.event

VOISelectionListener permits objects to listen for updates to a VOI.

voiVectorNewFinal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

VOIWormAnnotation - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting

VOIWormAnnotation() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

VOIWormAnnotation(VOIText) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

VOIWormAnnotation(VOIWormAnnotation) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

VOIWormAnnotation(Vector<Vector3f>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

VOIWormAnnotation(Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

vol1Channel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

vol 1 channel for scripting

vol2Channel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

vol 2 channel for scripting

vol2mat(double[][][][], byte[][][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

vol3Channel - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

vol 3 channel for scriptin

volBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Volume branch group.

volBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Volume branch group.

volExtents - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Resampled dimension value in Power of 2.

volExtents - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Resampled dimension value in Power of 2.

volLength - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

volLength - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

VolMap - Variable in class gov.nih.mipav.model.file.FilePARREC

vol map

volOpacityPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Volume opacity control dialog.

volParameters - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

vol parameters

VolParameters - Static variable in class gov.nih.mipav.model.file.FileInfoPARREC

vol parameters

VolParameters - Variable in class gov.nih.mipav.model.file.FilePARREC

vol parameters

volregBaseIdcodeString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregBaseNameString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregCenterBase - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregCenterOld - Variable in class gov.nih.mipav.model.file.FileAfni

For sub-brick #xxxxxx (so a max of 999,999 sub-bricks can be used), this stores 12 numbers for the matrix-vector of transformation from 3dvolreg.

volregGridparentIdcodeString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregGridparentNameString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregInputIdcodeString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregInputNameString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000000 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000001 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000002 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000003 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000004 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000005 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000006 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000007 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000008 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregMatvec000009 - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregRotcomNum - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregRotparentIdcodeString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volregRotparentNameString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

volRenderBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Volume render branch group.

volRenderBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Volume render branch group.

volRenderNode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Add here.

volRenderOG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Volume render order group, specify the rendering order.

volRenderOG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Volume render order group, specify the rendering order.

vols_added - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

Unknown use.

vols_added - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

Unknown use.

vols_added - Variable in class gov.nih.mipav.model.file.FileInfoSPM

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

volSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

volSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

volSize - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample

Volume size X*Y*Z.

volSize - Variable in class gov.nih.mipav.view.renderer.JDialogVolViewResample

Volume size X*Y*Z.

voltage - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.Detector

voltage - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

voltageField - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

volToolBar - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Surface Render toolbar.

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

volume - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

Global variables.

volume - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

volume - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

volume - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

Area of a slice (Xdim * Ydim * Zdim).

volume - Variable in class gov.nih.mipav.model.file.libjpeg.box

volume - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes

Volume of triangle mesh displayed associated with the burn.

volume - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter

DOCUMENT ME!

volume() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh

Calculates volume of triangle mesh.

volume() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3

Volume - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI

volume25D - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

volumeAdaptiveTruncatedVectorMedianColorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Filter a Color 3D image with a 3D kernel with adaptive truncated vector median filtering.

volumeAdaptiveVectorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Filter a Color 3D image with a 3D kernel.

VolumeBlend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

VolumeBoundingBox - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the BoundingBox frame around the volume data in the VolumeViewer.

VolumeBoundingBox(VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeBoundingBox

Creates a new bounding box object.

volumeBounds - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Volume Boundary may be changed for cropping the volume.

VolumeCalcEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

ShaderEffect class for calculating the volume normals on the GPU.

VolumeCalcEffect(VolumeImage, VolumeClipEffect) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

For creating the surface mask texture.

VolumeCalcEffect(VolumeImage, VolumeClipEffect, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

For creating the surface mask texture.

VolumeCalcEffect(VolumeImage, Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeCalcEffect

Create a new VolumeCalcEffect shader with the VolumeImage data.

VolumeCanvas3D - Class in gov.nih.mipav.view.renderer.J3D

Extension of Canvas3D to allow for customization as needed.

VolumeCanvas3D(GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Create extension of Canvas3D.

volumeCenter - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

The point to become center of transformed image.

volumeClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

volumeClip - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

VolumeClip - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the Clipping frames in the VolumeViewer.

VolumeClip(VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip

Creates a new VolumeClip object.

VolumeClipEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Clipping effect for Volume Objects.

VolumeClipEffect() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClipEffect

volumeClipRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

volumeColorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Filter a Color 3D image with a 3D kernel.

volumeColorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Filter a Color 3D image with a 3D kernel.

volumeCoordsCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

loads mesh files in basic volume coordinates

volumeDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList

string to test for when checking on statistics to calculate.

volumeDisplayMode3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

If true display 3D volume as a 3D texture map or 2D array of texture maps.

volumeDisplayMode3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

If true display 3D volume as a 3D texture map or 2D array of texture maps.

volumeDisplayRange - Variable in class gov.nih.mipav.model.structures.VOIBase

Used to display 3D VOIs in the three orthogonal views of the data in the volume renderer

volumeDomain() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Allocates and initializes important buffers.

VolumeDTI - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the Diffusion Tensor tracts in the VolumeViewer.

VolumeDTI(VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI

Creates a new VolumeDTI object.

volumeFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

Factor by which to shrink volume.

volumeFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Filter a 3D image with a 3D kernel.

volumeFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Filter a 3D image with a 3D kernel.

volumeFilterBorder(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Method performs median filtering on a volume that has been centerend in a border buffer and places the result in the destination buffer.

volumeFilterBorder(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

Assumes a monochrome image of type BYTE, SHORT, INTEGER, UBYTE, USHORT, UINTEGER.

volumeFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean

volumeFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquato95ModelMean2

volumeFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean

volumeFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration.IntTorquatoModelMean2

VolumeHistogramEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

The VolumePlaneEffect ShaderEffect creates shaders for mapping the volume data onto the planes for the 3-orthogonal planes displayed in the VolumeViewer and for the PlaneRender objects.

VolumeHistogramEffect(Texture, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

VolumeHistogramEffect(Texture, Matrix4f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

VolumeHistogramEffect(Texture, Texture, float, float, float, float, int, int, Matrix4f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

VolumeImage - Class in gov.nih.mipav.view.renderer.WildMagic.Render

The VolumeImage class provides an interface between the MIPAV ModelImage and the 2D and 3D Textures used to render the ModelImage on the GPU.

VolumeImage() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

VolumeImage(boolean, ModelImage, String, ViewJProgressBar, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

Create a Volume image with the input ModelImage.

VolumeImage(boolean, ModelImage, String, ViewJProgressBar, int, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

VolumeImageCrop - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeImageCrop(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, VolumeClipEffect, float[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageCrop

VolumeImageExtract - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeImageExtract(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, VolumeClipEffect, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageExtract

VolumeImageMultiDimensionalTransfer - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer

This class implements the 2D Histogram display and user-interaction widget in the JPanelMultiDimensionalTransfer class.

VolumeImageMultiDimensionalTransfer(Animator, GLCanvas, double, VolumeTriPlanarInterface, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.VolumeImageMultiDimensionalTransfer

Create a new VolumeImageMultiDimensionalTranfer display.

VolumeImageSurfaceMask - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeImageSurfaceMask(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage, Vector<VolumeObject>, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageSurfaceMask

VolumeImageViewer - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeImageViewer(GLCanvas, double, VolumeTriPlanarInterface, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

VolumeImageViewer(VolumeTriPlanarInterface, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

volumeLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

The volume label.

volumeLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

buring point volume label.

volumeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

The volume label.

volumeLength - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D

number of slices in the 3rd dimension. 4th dim length = sourceImage.3rd_dim / volumeLength

volumeLength - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D

DOCUMENT ME!

volumeLimit - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

flag indicates volume is greater than or equal to volumePercent.

volumeMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase

burning point volume mask.

volumeMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Reference to burning point voluem mask.

VolumeNode - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeNode(VolumeImage, Vector3f, float, float, float, Node) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeNode

Create a new VolumeNode with the VolumeImage parameter.

VolumeObject - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeObect: abstract base class for all rendered objects in the Volume Tri-Planar view.

VolumeObject(VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Create a new VolumeObject with the VolumeImage parameter.

VolumeObject(VolumeImage, VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Create a new VolumeObject with the VolumeImage parameter.

VolumeObject(VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Create a new VolumeObject with the VolumeImage parameter.

VolumeOrientationCube - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the Orientation Cube in the VolumeViewer.

VolumeOrientationCube(VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeOrientationCube

Creates a new VolumeOrientationCube object.

volumeOriginX - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

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volumeOriginY - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

volumeOriginZ - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

volumeParallelVectorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean

Filter a Color 3D image with a 3D kernel.

volumePercent - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Volume percentage.

VolumePlaneEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

The VolumePlaneEffect ShaderEffect creates shaders for mapping the volume data onto the planes for the 3-orthogonal planes displayed in the VolumeViewer and for the PlaneRender objects.

VolumePlaneEffect(VolumeImage, VolumeImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect

Creates a new VolumeShaderEffect object.

volumePositionFrame - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Reference to the volume coordinate frame.

VolumePositionFrame - Class in gov.nih.mipav.view

VolumePositionFrame, used by the ViewJFrameTriImage class to display the volume position data.

VolumePositionFrame(ViewJFrameTriImage, JTabbedPane) - Constructor for class gov.nih.mipav.view.VolumePositionFrame

Creates a new VolumePositionFrame object.

volumePositionPanel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Reference to the volume coordinate panel when it is in the plug-in position.

VolumePreRenderEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumePreRenderEffect() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect

VolumePreRenderEffect(boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect

Creates an new VolumePreRenderEffect

volumeRadius - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

VolumeRayCast - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeRayCast(VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

Creates a new VolumeRayCast object.

volumeRenderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

volumeRenderer - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves

VolumeRenderer - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Common interface for all volume renderers.

VolumeRenderer(ModelImage, ModelImage, GraphicsConfiguration) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Creates a new VolumeRenderer object.

VolumeRenderer(ModelImage, ModelLUT, ModelImage, ModelLUT, SurfaceRender, GraphicsConfiguration, ViewJProgressBar) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Makes a frame and puts the three image planes into it.

VolumeRenderer.SceneState - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Ray cast Scene State.

VolumeRendererRayCast - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Frame that holds the surface renderer.

VolumeRendererRayCast(ModelImage, ModelLUT, ModelImage, ModelLUT, SurfaceRender, GraphicsConfiguration, ViewJProgressBar) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast

Makes a frame and puts the three image planes into it.

VolumeRendererShearWarp - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Frame that holds the surface renderer.

VolumeRendererShearWarp(ModelImage, ModelLUT, ModelImage, ModelLUT, SurfaceRender, GraphicsConfiguration, ViewJProgressBar) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp

Makes a frame and puts the three image planes into it.

VolumeRenderState - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeRenderState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

volumeRepaint() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Repaint the volume.

volumes - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

VolumeSculptor - Class in gov.nih.mipav.view.renderer.J3D.volumeview

Implementation of Volume Sculpting for the RayCast and ShearWarp Volume Renderers.

VolumeSculptor(VolumeRenderer, int, int) - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor

Constructor:

VolumeShaderEffectMultiPass - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeShaderEffect is the workhorse of the GPU-based rendering in MIPAV.

VolumeShaderEffectMultiPass(VolumeImage, VolumeImage, Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass

Creates a new VolumeShaderEffect object.

VolumeShaderEffectMultiPassDynamic - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeShaderEffectMultiPassDynamic(VolumeImage, VolumeImage, Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic

Creates a new VolumeShaderEffect object.

volumeSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Computed as xDim*yDim*zDim

volumeSizeX - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

volumeSizeY - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

volumeSizeZ - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

VolumeSlices - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the three orthogonal planes with the volume data.

VolumeSlices(Renderer, VolumeImage, VolumeImage, Vector3f, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

Create a new VolumeObject with the VolumeImage parameter.

volumesList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

List of available VOIs.

volumeSpaceRadius - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

Default volume space burning point radius.

VolumesToReferenceTransformations - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

VolumesToReferenceTransformations - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

VolumeSurface - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeSurface(VolumeImage[], Texture, Vector3f, float, float, float, SurfaceState, boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

VolumeSurface(VolumeImage, VolumeImage, Vector3f, float, float, float, SurfaceState) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

Create a new VolumeSurface with the VolumeImage parameter.

VolumeSurface(VolumeImage, VolumeImage, Vector3f, float, float, float, SurfaceState, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

VolumeSurface(VolumeImage, VolumeImage, Vector3f, float, float, float, SurfaceState, boolean, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface

volumeText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh

Volume text field.

volumeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Displays the volume of triangle.

volumeText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning pont volume text box.

volumeText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM

Displays the volume of triangle.

VolumeTexture - Class in gov.nih.mipav.view.renderer.J3D

Defines 3D texture node for a volume of data.

VolumeTexture(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.J3D.VolumeTexture

Create texture(s) and automatic texture coordinate generation parameters for each slicing of the specified volume along each of the three axes.

volumeToLocalCoords(Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Converts the input point from volume-index coordinates into local coordinates used to display the object in the volume renderer.

VolumeTriPlanarInterface - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeTriPlanarInterface() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Specific constructor call from the VolumeViewerDTI.

VolumeTriPlanarInterface(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

VolumeTriPlanarInterface(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

VolumeTriPlanarInterface.IntVector - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeTriPlanarInterface.TabbedItem - Class in gov.nih.mipav.view.renderer.WildMagic

Item to hold tab name and corresponding panel.

VolumeTriPlanarInterfaceDTI - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

VolumeTriPlanarInterfaceDTI(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI

VolumeTriPlanarRender - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeTriPlanarRender(VolumeImage[], Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

VolumeTriPlanarRender(VolumeTriPlanarInterface, Animator, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Construct the Volume/Surface/Tri-Planar renderer.

VolumeTriPlanarRender(VolumeTriPlanarInterface, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Construct the Volume/Surface/Tri-Planar renderer.

VolumeTriPlanarRender(VolumeTriPlanarRender, GLCanvas, VolumeTriPlanarInterface, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

Construct the Volume/Surface/Tri-Planar renderer.

VolumeTriPlanarRenderBase - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeTriPlanarRenderBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Default Constructor.

VolumeTriPlanarRenderBase(Animator, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Construct the Volume/Surface/Tri-Planar renderer.

VolumeTriPlanarRenderBase(VolumeTriPlanarRenderBase, GLCanvas, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Construct the Volume/Surface/Tri-Planar renderer.

VolumeTriPlanarRenderBase.JPanelGPU - Class in gov.nih.mipav.view.renderer.WildMagic

VolumeTriPlanerRenderDTI - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

VolumeTriPlanerRenderDTI(VolumeTriPlanarInterface, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI

VolumeTriPlanerRenderDTI(VolumeTriPlanarRender, GLCanvas, VolumeTriPlanarInterfaceDTI, VolumeImage, VolumeImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanerRenderDTI

Construct the Volume/Surface/Tri-Planar renderer.

volumeType - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

volumeType - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume

DOCUMENT ME!

volumeVectorDirectionColorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Filter a Color 3D image with a 3D kernel with vector direction filtering.

volumeVectorMagnitudeColorFilter(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

Filter a Color 3D image with a 3D kernel with vector magnitude filtering.

VolumeVOI - Class in gov.nih.mipav.view.renderer.WildMagic.Render

Displays the VOIBase in the GPU-based VolumeRenderer.

VolumeVOI(VolumeImage, Vector3f, VOIBase, ColorRGBA) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI

Constructor for the VolumeVOI object.

VolumeVOIEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VolumeVOIEffect(boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect

voronoi(int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

vox_offset - Variable in class gov.nih.mipav.model.file.FileAnalyze

Voxel offset tag used to read in the image.

vox_offset - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

If the magic field is "n+1", then the voxel data is stored in the same file as the header.

vox_offset - Variable in class gov.nih.mipav.model.file.FileInfoSPM

public float pixdim = new float[8]; // image resolutions info mm or ms stored in FileInfoBase pixdim[0] = number of dimensions pixdim[1] = voxel width pixdim[2] = voxel height pixdim[3] = voxel thickness pixdim[4] = time.

vox_offset - Variable in class gov.nih.mipav.model.file.FileNIFTI

If the magic field is "n+1", then the voxel data is stored in the same file as the header.

vox_offset - Variable in class gov.nih.mipav.model.file.FilePARREC

Voxel offset tag used to read in the image.

vox_offset2 - Variable in class gov.nih.mipav.model.file.FileNIFTI

vox_units - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze

specifies the spatial units of measure for a voxel.

vox_units - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText

specifies the spatial units of measure for a voxel.

vox_units - Variable in class gov.nih.mipav.model.file.FileInfoSPM

public short dim[] = new short[8]; // image dimension data stored in FileInfoBase dim[0] = number of dimensions; usally 4 dim[1] = image width dim[2] = image height dim[3] = image depth (# of slices) dim[4] = volumes in image --- must be one for 3D image.

voxel - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid

voxelField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams

textfields

voxelLength - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC

voxelOrder - Variable in class gov.nih.mipav.model.file.FileInfoTrackVis

Storing order of image data

VoxelSize - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

VoxelSize - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

voxelSizeX - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

voxelSizeX - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

voxelSizeY - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

voxelSizeY - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

voxelSizeZ - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat

DOCUMENT ME!

voxelSizeZ - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

voxelsProcessed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

voxelsProcessed - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

voxelVolumeLabel - Variable in class gov.nih.mipav.view.JPanelHistogram

volume threshold vaue

voxelVolumeLabel - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

voxelVolumeLabel - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Used to display the volume or area of the voxels/pixels between the upper and lower bounds.

voxelVolumeLabelB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

DOCUMENT ME!

vp1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge

vp2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge

vprfxs - Static variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW

The valid list of options prefixes

vprfxs - Static variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor

The valid list of options prefixes

vprfxs - Static variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAW

The valid list of options prefixes

vprfxs - Static variable in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor

The valid list of options prefixes

VPTG_ghost - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

VPTG_ghost_T3D - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

vpTotal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

VQuantity - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Vertex

DOCUMENT ME!

VR(String, DicomType) - Constructor for enum gov.nih.mipav.model.file.FileDicomTagInfo.VR

VR_Bones - Static variable in class gov.nih.mipav.model.structures.ModelLUT

VR_Muscles_Bones - Static variable in class gov.nih.mipav.model.structures.ModelLUT

VR_Red_Vessels - Static variable in class gov.nih.mipav.model.structures.ModelLUT

vr_type - Variable in class gov.nih.mipav.model.file.FileDicomTagTable

VR_type to indicate explicit/implicit nature of tags contained in tag table

vr_type - Variable in class gov.nih.mipav.model.file.FileInfoDicom

VR type can be IMPLICIT or EXPLICIT.

VR1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VR1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

VR2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VR2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

VR3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModREADTable

VR3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModREADTable

vrBytes - Variable in class gov.nih.mipav.model.file.FileDicom

Value Representation - see FileDicomTagInfo.

vrImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

VRImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

vrLinkedBuffer - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF

Reference to the link buffer communication link.

vrows - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex

< initial state covariance

vrows - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor

< options for extracting patches.

VRtype(boolean) - Constructor for enum gov.nih.mipav.model.file.FileInfoDicom.VRtype

vSampFactor - Variable in class gov.nih.mipav.model.file.FileDicomJPEG

Vertical sample factor.

VScaleBy_Serial(double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

VScaleDiff_Serial(double, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

VScaleSum_Serial(double, CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

VSEMD_MultipleImages - Class in gov.nih.mipav.view.renderer.WildMagic.Render

VSEMD_MultipleImages(VolumeImage[], Texture, Texture) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages

Creates a new VolumeShaderEffect object.

vsize - Variable in class gov.nih.mipav.model.file.FileMincVarElem

DOCUMENT ME!

vsize - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

vsnr() - Method in class gov.nih.mipav.model.algorithms.ImageQuality

VSNR - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_b - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_Ce - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_Ci - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_Cis - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_CTe - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_filter_gains - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_fs - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_g - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_k - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_mL - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_mX - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_num_levels - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_pix2lum_table - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_r - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_v - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_data_zeta - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vsnr_value - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

vSpaceLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

VSum_Serial(CVODES.NVector, CVODES.NVector, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES

vswap(int, int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream

VT_BLOB - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_BOOL - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_BSTR - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_DATE - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_DISPATCH - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_EMPTY - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_I2 - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_I4 - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_R8 - Static variable in class gov.nih.mipav.model.file.FileZVI

VT_STORED_OBJECT - Static variable in class gov.nih.mipav.model.file.FileZVI

VTail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

VTail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

VTARG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

vVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

vVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

vVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

vwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

vx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

vxBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola

vy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

vyBins - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola

W

w - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData

w - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge

w - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.userWeightFunct

w - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

w - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM.model

w - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem

w - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ExtendedWilkinson

weights for simplicity, coverage, density and legibility

w - Variable in class gov.nih.mipav.model.algorithms.curfit

w - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t

w - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez

w - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

w - Variable in class gov.nih.mipav.model.algorithms.ODE

w - Variable in class gov.nih.mipav.model.algorithms.ODEEP

w - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

w - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

w - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution

w - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t

data width

w - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t

data width

w - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_t1_t

w - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder

DOCUMENT ME!

w - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

w - Variable in class gov.nih.mipav.view.ColorIcon

DOCUMENT ME!

w - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model

feature weight array

W - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

W - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

W - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.info

W - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

W - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

w_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

w_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

W_LOCKED - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase

Used to indicate that the buffer is locked from writing.

w_repeat - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

w_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS

W_sub_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

W_sub_mode - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

w0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

w0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

W02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

w1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

w1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

W12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

w2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

w2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

w3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

w3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.model.file.FileOME

The W3C XML schema.

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.model.file.FilePolylineVOIXML

The W3C XML schema.

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.model.file.FileVOI

The W3C XML schema.

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.model.file.FileXML

XML schema string.

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.view.dialogs.InstanceVOI

The W3C XML schema.

W3C_XML_SCHEMA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI

The W3C XML schema.

W3D - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

W5 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Wave 5

W7 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Wave 7

wa1 - Variable in class gov.nih.mipav.model.algorithms.Lmmin

wa1, wa2, and wa3 are work arrays of length n.

wa2 - Variable in class gov.nih.mipav.model.algorithms.Lmmin

wa3 - Variable in class gov.nih.mipav.model.algorithms.Lmmin

wa4 - Variable in class gov.nih.mipav.model.algorithms.Lmmin

wa4 is a work array of length m, used among others to hold residuals from evaluate.

waitbar - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

waitCursor - Static variable in class gov.nih.mipav.view.MipavUtil

Standard cursor: wait.

waitCursor - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

waitCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

waitFileSync - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

waitFileSync - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie

File write synchronization variables.

waitFileSync - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker

DOCUMENT ME!

waitForFileDone() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie

Block until file writing is done.

waitForFileDone() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker

Block until file writing is done.

waitForFileDone(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

Block until file writing is done.

waitForState(Processor, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

Block until the processor has transitioned to the given state.

waitForState(Processor, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie

Block until the processor has transitioned to the given state.

waitForState(Processor, int) - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker

Block until the processor has transitioned to the given state.

waitIntervalMillis - Variable in class gov.nih.mipav.view.MaximumLinesDocumentListener

waitSync - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTranscode

DOCUMENT ME!

waitSync - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie

DOCUMENT ME!

waitSync - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker

Synchonization control variables.

wakeup() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

Manually wake up the behavior.

wakeUp - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

wallPositions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser

WalshHadamardTransform - Class in gov.nih.mipav.model.algorithms

Copyright (c) 2016, suresh All rights reserved.

WalshHadamardTransform(ModelImage, ModelImage, ModelImage, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.WalshHadamardTransform

WalshHadamardTransform2 - Class in gov.nih.mipav.model.algorithms

WalshHadamardTransform2() - Constructor for class gov.nih.mipav.model.algorithms.WalshHadamardTransform2

WalshHadamardTransform2(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.WalshHadamardTransform2

WalshHadamardTransform3 - Class in gov.nih.mipav.model.algorithms

WalshHadamardTransform3() - Constructor for class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

WalshHadamardTransform3(ModelImage, ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.WalshHadamardTransform3

WAND - Static variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

wandCursor - Static variable in class gov.nih.mipav.view.MipavUtil

Standard cursor: wand (hand).

wandCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

warm_restart - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

warm_restart(Matrix, Matrix, Matrix, int, Matrix, Matrix, Matrix, Matrix, Matrix, double[], double[], double[], int, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

warn(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

warn(String) - Method in interface gov.nih.mipav.model.file.MetadataExtractor.TiffHandler

WARN - gov.nih.mipav.view.Preferences.LogLevel

warning(String) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAW

Prints the warning message 'msg' to standard err, prepending "WARNING" to it.

warning(String) - Method in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor

Prints the warning message 'msg' to standard err, prepending "WARNING" to it.

warning(String) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAW

Prints the warning message 'msg' to standard err, prepending "WARNING" to it.

warning(String) - Method in class gov.nih.mipav.model.file.rawjp2.EncoderRAWColor

Prints the warning message 'msg' to standard err, prepending "WARNING" to it.

warning(SAXParseException) - Method in class gov.nih.mipav.model.file.XMLErrorHandler

Handles parse exception warnings by outputting them to the debug window.

warning(SAXParseException) - Method in class gov.nih.mipav.view.dialogs.XMLErrorHandler

Handles parse exception warnings by outputting them to the debug window.

warning(SAXParseException) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.XMLErrorHandler

Handles parse exception warnings by outputting them to the debug window.

WARNING - Variable in class gov.nih.mipav.model.algorithms.CeresSolver

Warp(CAAMPoint, CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp

Warps the point 'in' to the point 'out' using the two shapes as irregular point clouds defining a 2D warp function.

Warp(CAAMPoint, CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear

Warps point 'in' to point 'out' (if possible).

Warp_4dof(double[], double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC

WARP_AFFINE_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni

warp types.

WARP_TALAIRACH_12_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

warpData - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

warpedImage - Variable in class gov.nih.mipav.model.algorithms.SIFT3D

warpParentnameString - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

warps - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

warps - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

warpType - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

wasCancelled - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize

wasCancelled() - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize

wasDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor

check the dialog that dialog's OKAY button was struck, and it closed without problems.

wasDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor

check the dialog that dialog's OKAY button was struck, and it closed without problems.

wasDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor

check the dialog that dialog's OKAY button was struck, and it closed without problems.

wasDialogOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor

dialog is closed, but can its value be accepted now?

wasDragging - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Boolean to determine if the mouse had been dragging before mouse release (for moving and setting active).

wasLoaded - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint

switch that tells the save-dialog that this brush was opened from disk, so brush will be re-written on save

wasOCLChecked - Static variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

wasOkay - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

Boolean that determines if the window was closed (hitting the X) wasOkay = true means the [x] was not clicked.

wasOkay() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

Returns true if the window was not closed using the 'X' and was instead closed after the user clicked the 'Save' button.

wasSuccess() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed

DOCUMENT ME!

watershedAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed

DOCUMENT ME!

watershedID - Variable in class gov.nih.mipav.model.structures.VOI

Used to objects a label or ID inconjuction with the watershed algorithm.

watershedSegment() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed

WATSON - Variable in class gov.nih.mipav.model.algorithms.Lmmin

WATSON - Variable in class gov.nih.mipav.model.algorithms.LsqFit

WATSON - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

WATSON - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

Wav - gov.nih.mipav.model.file.MetadataExtractor.FileType

wave1 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

wave2 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

wave3 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

wave4 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

wave5 - Variable in class gov.nih.mipav.model.file.FileInfoMRC

DOCUMENT ME!

wavedec(double[][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedec(double[][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedec(double[], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedec2(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedec2(double[][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedec3(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedecn(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavedecn(double[][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavefun(PyWavelets.ContinuousWavelet, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavefun(PyWavelets.DiscreteWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waveIncrement - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

wavelength - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef

wavelength - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.LightSource.Laser

wavelength - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution

The reflected or fluorescence wavelength of the sample:

wavelengthArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

wavelengthNumber - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

wavelengths - Variable in class gov.nih.mipav.model.file.FileInfoLSM

DOCUMENT ME!

wavelengths - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

wavelet - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t

Wavelet(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

wavelet_levels - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

wavelet_levels - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

wavelet_levels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

wavelet_levels - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

wavelet_name - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

wavelet_name - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

wavelet_name - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

wavelet_name - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

WAVELET_NAME() - Constructor for enum gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME

wavelet_order - Variable in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

wavelet_order - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

wavelet_order - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter

wavelet_order - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter

waveletAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

waveletAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

waveletAlgo - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

waveletAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

Use serialVersionUID for interoperability.

waveletAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

DOCUMENT ME!

waveletAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

waveletCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

DOCUMENT ME!

waveletCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

waveletFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

wavelet feature number.

waveletFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

waveletFeatureNumber - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

waveletFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

waveletFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

waveletFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

waveletFilter - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

waveletFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

Wavelet filter.

waveletFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D

waveletFilter - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D

waveletFuseAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse

DOCUMENT ME!

waveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

waveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

waveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

waveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

waveletImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

waveletImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

DOCUMENT ME!

waveletImage - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold

DOCUMENT ME!

WaveletMatrix(int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

waveletMatrix_method - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

waveletMatrix_method - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

waveletMatrixButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets

waveletPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

wavelets - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec(double[][][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec(double[][][], PyWavelets.DiscreteWavelet, PyWavelets.MODE, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec(double[][], PyWavelets.DiscreteWavelet, PyWavelets.MODE) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec2(double[][][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec2(double[][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverec3(double[][][][], PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverecn2(Vector<HashMap<String, double[][]>>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waverecn3(Vector<HashMap<String, double[][][]>>, PyWavelets.DiscreteWavelet[], PyWavelets.MODE[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

waveStart - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image

wb - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement

wb - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

wbCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement

wcheckcrit(double[], double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

wcSystem - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo

If true change matrix to the world coordinate system.

wcSystem - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

If true change matrix to the world coordinate system.

wDivisions - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE

number of divisions to make in the width.

WDSC(double[], int, int, double, double[], double[][], double[][], double[][], double[][], double[], double[], double[], double[], int, double[], double, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

wdx_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

wdy_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

weak - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting.mergeItem

WeakConnectedEdgePatternHorizontal - Class in gov.nih.mipav.view.renderer.WildMagic.Knees

WeakConnectedEdgePatternHorizontal() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontal

WeakConnectedEdgePatternHorizontalTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees

WeakConnectedEdgePatternHorizontalTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternHorizontalTest

WeakConnectedEdgePatternVertical - Class in gov.nih.mipav.view.renderer.WildMagic.Knees

WeakConnectedEdgePatternVertical() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVertical

WeakConnectedEdgePatternVerticalTest - Class in gov.nih.mipav.view.renderer.WildMagic.Knees

WeakConnectedEdgePatternVerticalTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Knees.WeakConnectedEdgePatternVerticalTest

weakEdgePatternHorizontal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

weakEdgePatternHorizontal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

weakEdgePatternHorizontal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

weakEdgePatternHorizontal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

weakEdgePatternHorizontal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

weakEdgePatternVertical - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

weakEdgePatternVertical - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

weakEdgePatternVertical - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

weakEdgePatternVertical - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

weakEdgePatternVertical - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

WebP - gov.nih.mipav.model.file.MetadataExtractor.FileType

weibull_prob_paper(double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

WeibullCostFunction2param(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction2param

WeibullCostFunction3param(double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.WeibullCostFunction3param

WeibullDistribution - Class in gov.nih.mipav.model.algorithms

WeibullDistribution() - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution

WeibullDistribution(double, double, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution

WeibullDistribution.Analysis - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.ll_weib_beta_cen_r - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.ll_weib_beta_uncen - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.Pair<T,U> - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.threeParameterFittingCostFunction - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.twoParameterFittingCostFunction - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.WeibullCostFunction2param - Class in gov.nih.mipav.model.algorithms

WeibullDistribution.WeibullCostFunction3param - Class in gov.nih.mipav.model.algorithms

weight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans.positionWeightItem

DOCUMENT ME!

weight - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans

weight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection

weight - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem

weight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.Edge

weight - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

weight - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

weight - Variable in class gov.nih.mipav.model.file.FileInfoImageXML

DOCUMENT ME!

weight - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans

weight - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

weight - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.PriorityQueue.HeapNode

weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.Edge

weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.Edge

weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

weight - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

weight(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

weight_diff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth

The weighting attached to the component of the potential due to the difference between two neighboring pixel values.

weight_diff - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth

The weighting attached to the component of the potential due to the difference between two neighboring pixel values.

weight_label - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter

weight_label - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter

weightA - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask

weightdp2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

Flag to determine if there are weighted images or not.

weighted - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

weighted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

weighted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

weighted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

weighted - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

WEIGHTED_AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

Weighted average slice type.

WEIGHTED_AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

Weighted average slice type.

weighted_dx - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

weighted_dy - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair

weighted_edgesComparator() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesComparator

weighted_edgesItem(int, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.weighted_edgesItem

WEIGHTED_LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline

WEIGHTED_LINEAR - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor

WeightedCOG(double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC

WeightedGraph() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph

WeightedGraphAddVertexAndEdge() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

WeightedGraphAddVertexIdempotence() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

WeightedGraphDieOnNonExistentVertex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

WeightedGraphEmptyGraph() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

WeightedGraphNonExistentEdge() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

weightedgroupedsparseproj(double[], int[], double[], Matrix, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

weightedgroupedsparseproj_col(int[], Matrix, double, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedInputPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedInputPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedInputPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedInputPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedRefPixels - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedRefPixelsSub2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedRefPixelsSub4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D

DOCUMENT ME!

weightedRefPixelsSub8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D

DOCUMENT ME!

weightingFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization

UnsharpMask weighting factor.

weightLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter

weightMap - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

weightMap - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

weightMapDefined - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

weightMapDefined - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation

weightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask

weightPrevious - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

For weighted averaging.

weightPrevious - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

For weighted averaging.

weightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

weightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D

DOCUMENT ME!

weightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

weightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D

DOCUMENT ME!

weightRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

weights - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm

< Data labels.

weights_peak1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

weights_peak2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

weightSliceImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D

DOCUMENT ME!

weightSliceImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2

DOCUMENT ME!

weightVolumeImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D

DOCUMENT ME!

weightVolumeImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D

DOCUMENT ME!

wellAddress - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

wellExternRef - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

wellString - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.PlateInfo

west - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

West - gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition

wfilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

The wfilename.

wgmu(double[], double[], Matrix, Matrix, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

wh3Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

whAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform

when - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse

Event time stamp.

when - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning

DOCUMENT ME!

when - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse

DOCUMENT ME!

where - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut

where - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

which - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB

< Closest entry

which - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_cut

which2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry

whichClass(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D

whichClass(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D

whichClass(int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain

whichComp - Variable in class gov.nih.mipav.view.renderer.SceneState

Current active volume opacity control of the volume render.

whichCut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry

whichCut - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.fams_hash_entry2

whichEnd(int) - Method in class gov.nih.mipav.model.structures.TransferFunction

returns -1 if not an endpoint returns 0 if starting point returns 1 if end point

whichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

whichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

whichLeg - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

whichPlane(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSlices

whichptr - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller

whichTissue(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Check the given voxel belong to which segmentation.

whichTissue(float, float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Check the given voxel belong to which segmentation.

WHITE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

WHITE - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable

WHITE - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable

whiteBalance - Variable in class gov.nih.mipav.model.file.FileSVS

whiteBalance - Variable in class gov.nih.mipav.model.file.FileTiff

whiteImage - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint

used to create the "unselected" state of the buttons

whiteObjectButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders

whitespaceH - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

whitespaceH - Variable in class gov.nih.mipav.view.LineMeter

DOCUMENT ME!

whitespaceW - Variable in class gov.nih.mipav.view.BarMeter

DOCUMENT ME!

whitespaceW - Variable in class gov.nih.mipav.view.LineMeter

DOCUMENT ME!

whiteStart - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction

Gray scale value at which the white membership function begins the linear transition from 0 to 1 at the highest intensity value

whiteStart - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction

DOCUMENT ME!

whiteValue0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI

whiteValue1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI

whiteValue2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI

whiteValue3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI

whole_image - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller

whole_image - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller

WHOLE_IMAGE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram

WHOLE_IMAGE - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary

wholeImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

wholeImage is constrained to be true if background cropping is selected.

wholeImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

wholeImage is constrained to be true.

wholeImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

wholeImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

wholeImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFillObjects

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThreshold

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB

DOCUMENT ME!

wholeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats

VOI used for whole image processing

wholeImage - Variable in class gov.nih.mipav.view.JFrameHistogram

true = apply algorithm to the whole image

wholeImage - Variable in class gov.nih.mipav.view.JPanelHistogram

true = apply algorithm to the whole image

wholeImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

wholeImageFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK

wholeImageFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK

wholeImageRadio - Variable in class gov.nih.mipav.view.components.JPanelAlgorithmOutputOptions

DOCUMENT ME!

wholeImageRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

radio buttons

wholeImageThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

flags for destination, threshold, inverse, and color image

wholeImageThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

flags for destination and threshold

wholeOrganButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

wholeOrganCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

wholeOrganIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP

DOCUMENT ME!

wholeOrganIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

wholeOrganNormalize - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

wholeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance

DOCUMENT ME!

wholeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogMean

DOCUMENT ME!

wholeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian

DOCUMENT ME!

wholeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogMode

DOCUMENT ME!

widenButtonSize - Static variable in class gov.nih.mipav.view.MipavUtil

The horizontally widen size that all buttons should be.

WidgetFactory - Class in gov.nih.mipav.view.components

This class is a collection of GUI widget generation methods.

WidgetFactory() - Constructor for class gov.nih.mipav.view.components.WidgetFactory

WidgetFactory.ScrollTextArea - Class in gov.nih.mipav.view.components

ScrollPane with an accessible JTextArea

WidgetSelected - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

width - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

DOCUMENT ME!

width - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

width - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

width - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency

width - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT

width - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img

width and height of this image

width - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator

width - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection

width - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry

width - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceOctaveGeometry

width - Variable in class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

width - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC

width - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlPgmImage

width - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< delta-smoothing.

width - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Sep_FIR_filter

width - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

width - Variable in class gov.nih.mipav.model.file.FileGESigna4X

width - Variable in class gov.nih.mipav.model.file.FileGESigna5X

DOCUMENT ME!

width - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

8 - width of image.

width - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

width - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

width - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream

width - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream

width - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

width - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream

width - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream

width - Variable in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

Image width

width - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Dimensions of rectangle to draw.

width - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

width - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions

DOCUMENT ME!

width - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

width - Variable in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream

DOCUMENT ME!

width - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream

DOCUMENT ME!

width - Variable in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream

DOCUMENT ME!

width - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree

width - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize

width(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

Width() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage

Used by AAM appearance model to get dimension

Width() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Shape width.

Width() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect

Width(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode

width_in_blocks - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info

widthButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

Buttons for width, height values

widthDivisions - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE

DOCUMENT ME!

widthField - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

widthField - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions

DOCUMENT ME!

widthField - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize

widthLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

widthResFactor - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

Storage for correction parameters where datasets have non isotropic values.

widthResFactor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

Storage for correction parameters where datasets have non isotropic values.

widthResFactor - Variable in class gov.nih.mipav.view.ViewJFrameImage

Storage for correction parameters where datasets have non isotropic values.

widthResFactor - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Storage for correction parameters where datasets have non isotropic values.

widthString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter

widthString - Variable in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength

widthText - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls

Text fields for zoom box

widthText - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

wiener_filtering_hadamard(double[][][], double[][][], double, boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D

WienerBIORButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

WienerDCTButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

WienerFilterNoise - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

WienerTransformGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D

WigglyBowlCostFunctionAndEvaluationCallback(double[], String, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback

WillBeNonManifold(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh

willReadBlock() - Method in class gov.nih.mipav.view.renderer.flythroughview.JpegImagesToMovie.ImageSourceStream

We should never need to block assuming data are read from files.

willReadBlock() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream

We should never need to block assuming data are read from files.

willReadBlock() - Method in class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.JpegSourceStream

We should never need to block assuming data are read from files.

win - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

win - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchOptions

win - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAW

Frame used to display decoded image

win - Variable in class gov.nih.mipav.model.file.rawjp2.DecoderRAWColor

Frame used to display decoded image

WIN_REGION - Static variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

window - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering.famsPoint

window - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

The number of slices used in the intensity projection, represents a sliding window.

window - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Value of the window size for the calculation (X,Y,Z).

window - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

The size of the window.

WINDOW - gov.nih.mipav.view.dialogs.JDialogCaptureScreen.WindowProperties

The entire image window

WINDOW - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

WINDOW - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

WINDOW - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges

DOCUMENT ME!

WINDOW - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

WINDOW - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

window_size - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftFilt

< magnification factor.

window_size - Variable in class gov.nih.mipav.model.algorithms.SIFT

window_size - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

windowA - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

windowActivated(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

If in Window mode, captures the content pane of the window activated and sets the current rectangle to the bounds of the content pane.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowActivated.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowActivated.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Over loaded so that it doesn't do anything.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Tells the UI that this frame is the currently active one.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowActivated - unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Over loaded so that it doesn't do anything.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

unchanged.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowActivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Do nothing.

windowB - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

windowButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Button for selecting window mode.

windowC - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

windowCenter - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

windowCenter - Variable in class gov.nih.mipav.model.file.FilePARREC

WindowCenter - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

windowCenterIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

windowCenterPos - Variable in class gov.nih.mipav.model.file.FilePARREC

windowCenterWidthExplanation - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

windowClosed(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder

Performs the following actions based on the command:
OK - creates a file using the currently selected image and the given file name and then attaches it to email Insert - inserts the image into the description area and if a name is provided, attaches the image as a file as well

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowClosed.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowClosed.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowClosed - unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

unchanged.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowClosed(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Do nothing.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Sets completed to false, disposes the progress bar and notifies all listeners that the algorithm is stopped.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Confirms if the user really wants to exit, then closes the application (if running without the rest of the MIPAV GUI).

windowClosing(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Confirms if the user really wants to exit, then closes the application (if running without the rest of the MIPAV GUI).

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator

windoe closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

Cleans up the frame before closing.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker

windowClosing - calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

windoe closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

windowclosing...override of WindowListener interface.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay

Do nothing on window close so we dont have to rebuild the dicom list.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay

cleanup on closing.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow

DOCUMENT ME!

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Closes the dialog and stop the script recorder.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering

windoe closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker

windowClosing - calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Calls dispose.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Accessor that closing the mouse recorder window frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowClosing Catch the windowClosing event so that the local data memebrs can be destroyed.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface

Overrides method in JDialogBase so dialog isn't disposed, just hidden.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowClosing Catch the windowClosing event so that the local data memebrs can be destroyed.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter

Accessor that closing the mouse recorder window frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Ask user if really wishes to close the image frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

window closing

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowClosing Catch the windowClosing event so that the local data memebrs can be destroyed.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM

Closing the mouse recorder window frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Sets completed to false, disposes the progress bar and notifies all listeners that the algorithm is stopped.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Stops thread, calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Stops thread, calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Cleans up the frame before closing.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Stops thread, calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Stops thread, calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowClosing - calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Closes frame is requested.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Disposes of error dialog, then frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Calls close.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox

Ask user if really wishes to close the image frame.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Calls dispose.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Calls dispose.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

Closes window and disposes of frame and component.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Dispose the progress window.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Wakes up the VUI thread on the user's closing of the splash screen window if it is sleeping while waiting for the splash screen to be displayed.

windowClosing(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Confirms if the user really wants to exit, then closes the application.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowDeactivated.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowDeactivated.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowDeactivated - unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

unchanged.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowDeactivated(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowDeiconified.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowDeiconified.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowDeiconified - unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

unchanged.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowDeiconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Deiconify only the other frames who's last state was normal (ie- restore other frames to their lastState).

windowedRegionSize - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

The window region size of used when two images are displayed in the same frame.

windowFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT

DOCUMENT ME!

windowFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter

DOCUMENT ME!

windowIconified(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowIconified.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowIconified.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowIconified - unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

unchanged.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowIconified(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Iconify all other frames associateed with MIPAV.

windowLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Label displays the number of slices in the sliding window.

windowLevel - Variable in class gov.nih.mipav.view.ViewJFrameImage

Reference to the two window and level dialogs where [0] is for imageA, [1] for imageB.

WindowLevel - Class in gov.nih.mipav.view

The WindowLevel class provides mouse-driven window-level controls for the ModelLUT or ModelRGB lookup tables.

WindowLevel - gov.nih.mipav.view.Preferences.DefaultDisplay

Window and level settings (will also be reflected as transfer function

WindowLevel() - Constructor for class gov.nih.mipav.view.WindowLevel

Default constructor.

windowLevelCheckBox - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI

Window level check box.

WindowLevelGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions

windowLevelPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

DOCUMENT ME!

windowListener - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti

windowNumber - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

windowOpened(WindowEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.plugins.JDialogStandaloneScriptablePlugin

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT

Deprecated.

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.JFrameHistogram

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties

windowOpened.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow

windowOpened.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM

Starts Animator on windowOpened.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate

Does nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip

Does nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase

Does nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM

Does nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

Does nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser

windowOpened - unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT

Deprecated.

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB

Deprecated.

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool

Unchanged.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewSplashScreen

Do nothing.

windowOpened(WindowEvent) - Method in class gov.nih.mipav.view.ViewUserInterface

Do nothing.

WindowProperties() - Constructor for enum gov.nih.mipav.view.dialogs.JDialogCaptureScreen.WindowProperties

WINDOWS_1252 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets

windowSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

windowSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

Size of square window used in calculating each glcm matrix - must be an odd number.

windowSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

The size of the local orientation analysis window

windowSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture

Size of square window must be 3, 5, or 7

windowSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures

Size of square window used in calculating each glcm matrix - must be an odd number.

windowSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor

windowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

DOCUMENT ME!

windowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression

Size of local orientation analysis window

windowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture

DOCUMENT ME!

windowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor

windowSize - Variable in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation

windowSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures

DOCUMENT ME!

WindowSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

windowSizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

windowSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

Slider enables user to change the size of the sliding window.

windowSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

DOCUMENT ME!

windowSliderMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Stores the minimum slider value.

windowType - Variable in class gov.nih.mipav.model.algorithms.SVM.VlHomogeneousKernelMap

windowWidth - Variable in class gov.nih.mipav.model.file.FileInfoPARREC

windowWidth - Variable in class gov.nih.mipav.model.file.FilePARREC

WindowWidth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

windowWidthIndex - Variable in class gov.nih.mipav.model.file.FilePARREC

windowWidthPos - Variable in class gov.nih.mipav.model.file.FilePARREC

WindowX - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

WindowY - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState

winLevel - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

winLevelCursor - Static variable in class gov.nih.mipav.view.MipavUtil

DOCUMENT ME!

winLevelGray(ModelLUT, ModelImage) - Method in class gov.nih.mipav.view.WindowLevel

winLevelGray finds old_fWindow and old_fLevel

winLevelRGB(ModelRGB, ModelImage) - Method in class gov.nih.mipav.view.WindowLevel

winLevelRGB finds old_fWindow and old_fLevel.

winLevelSet - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

User invokes window and level adjustment with right mouse drag in DEFAULT mode.

winMaxFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

the maxes and mins for window and level *

winMinFloat - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

the maxes and mins for window and level *

winValTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

textfield inputs for window and level *

winxy - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

winz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams

WishartVariateGenerator - Class in gov.nih.mipav.model.algorithms

Ported from original FORTRAN code Algorithm AS 53: Wishart Variate Generator Authors: W.

WishartVariateGenerator(double[][], int, double[][], double[][]) - Constructor for class gov.nih.mipav.model.algorithms.WishartVariateGenerator

wishpdf(double[][], double, double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.Fastfit

wishpdf(double, double, double, boolean) - Method in class gov.nih.mipav.model.algorithms.Fastfit

wishpdfln(double[][], double, double[][], boolean) - Method in class gov.nih.mipav.model.algorithms.Fastfit

wishpdfln(double, double, double, boolean) - Method in class gov.nih.mipav.model.algorithms.Fastfit

withinDistance(float, float, float, float, float, float, double) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Check to see if the given voxel is within the sphere radius from the center point.

WithLineSearchMinimizerImpl(CeresSolver.LineSearchType, CeresSolver.LineSearchDirectionType, CeresSolver.LineSearchInterpolationType, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest

wKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

wKernel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

WL_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

wList - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1

wList - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1

The ordered list of images that the algorithm is dependent on.

wList - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2

wlra() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

WLRA - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

wmedian(Matrix, double[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization

wmThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval

White Matter threshold :

WN(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

wname - Variable in class gov.nih.mipav.model.algorithms.NLMeans_filt2D

wNumber - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

wo - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

WOLFE - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType

WolfeLineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch

WOOD - Variable in class gov.nih.mipav.model.algorithms.Lmmin

WOOD - Variable in class gov.nih.mipav.model.algorithms.LsqFit

WOOD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

WoodFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.WoodFunction

WORD_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType

A string with VR "OW" is stored in the tag's value.

work - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

WORK - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

work_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DenseQRSolver

WORK2 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WorkDimensions(int, long, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions

workDone - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

workFactor - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

workingBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

workLimit - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

WORKQ - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WORKT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

worldCoordCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix

DOCUMENT ME!

wormData - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice

WormData - Class in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting

WormData(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

wormDiameters - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

wormImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData

wormOrigin - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

WPPQF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WPPQG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WPROD(double[], int, int, double, double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

WQSUM(double[], double, int, int, double[], double, double, int, int, double, double[][], double[][], double[], double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

WQUAD(double[], double, int, int, double[], double, int, int, double, int, int, double, double[][], double[][], double[], double[], int, double[], int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

WQUAD1(double[], double, int, int, double[], double, double, int, int, double, double[][], double[][], double[], double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

wRangeMaxValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

wRangeMinValue - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

wrap(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

wrapped_cost_function_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.ConditionedCostFunction

WRFUN1(int, double[][], int[], int[], double[], int[], int[], String[], int, String, String, String, String, RandomAccessFile, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WRFUN2(int, int, double[][], int[], int[], double[], int[], int[], String[], int, String, String, String, boolean[], String, RandomAccessFile, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WRHEAD(int, int, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

write - Variable in class gov.nih.mipav.model.algorithms.StochasticForests

write() - Method in class gov.nih.mipav.model.file.FileHistoLUT

Writes the default ModelLUT or ModelRGB to a file.

write() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

Writes the source's current tile to the output.

write(byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a byte arrary to the outgoing buffers.

write(byte[], int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a specified number of bytes from the byte buffer into outGoing ByteBuffer list of byte buffers.

write(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream

modified by Oliver Merkel, 010128

write(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.NullOutputStream

write(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

write(int, int, int, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

Writes the data of the specified area to the file, coordinates are relative to the current tile of the source.

write(libdt.CovMatrix) - Method in class gov.nih.mipav.model.algorithms.libdt

write(libdt.Dytex) - Method in class gov.nih.mipav.model.algorithms.libdt

write(libdt.DytexMix) - Method in class gov.nih.mipav.model.algorithms.libdt

write(libdt.DytexOptions) - Method in class gov.nih.mipav.model.algorithms.libdt

write(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase

Writes the header and body of the PDU messages.

write(DICOM_Object, String, byte) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Writes the DICOMObj out through the socket.

write(DICOM_PDUService) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Verification

Writes the UID_Verification via the PDU service.

write(DICOM_PDUService, byte, byte) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF

Writes P-DATA-TF Messages.

write(DICOM_PDUService, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Query

Writes a query.

write(DICOM_PDUService, DICOM_Object, byte[], DICOM_Move) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdRetrieve

Transfers a C-MOVE request to a SCP.

write(DICOM_PDUService, DICOM_Object, String, int, String, DICOM_Object, int, int, int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CResponse

Writes a DIMSE-C message.

write(DICOM_PDUService, DICOM_Object, String, String, String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_StdStorage

Provides Storage SOP write capability.

write(DICOM_PDUService, String, String, String, DICOM_Object, byte[]) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_CRequest

Writes a DIMSE-C message.

write(Object) - Method in interface gov.nih.mipav.model.file.DicomType

write(Object) - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.NumType

write(Object) - Method in enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType

write(String, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt

write(String, byte) - Method in class gov.nih.mipav.model.algorithms.libdt

write(String, double) - Method in class gov.nih.mipav.model.algorithms.libdt

write(String, int) - Method in class gov.nih.mipav.model.algorithms.libdt

write(String, libdt.Mat) - Method in class gov.nih.mipav.model.algorithms.libdt

write(String, DICOM_Object, String, byte) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService

Writes the image (loaded into ioBuffer from file) out the port.

write(String, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.libdt

write(Point3i) - Method in class gov.nih.mipav.model.algorithms.libdt

Write(int, int, double[][], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter

Write(int, int, double[][], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowJacobianWriter

Write(int, int, double[][], CeresSolver.SparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseJacobianWriter

WRITE - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

write_Affine(String, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

write_backing_store_byte(libjpeg.jpeg_decompress_struct, libjpeg.backing_store_info, byte[][], long, int) - Method in class gov.nih.mipav.model.file.libjpeg

write_backing_store_short(libjpeg.jpeg_decompress_struct, libjpeg.backing_store_info, short[][], long, int) - Method in class gov.nih.mipav.model.file.libjpeg

write_Mat_rm(String, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

write_obj(String) - Method in class gov.nih.mipav.model.algorithms.LSCM.Mesh

writeAfni(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes an AFNI file to store the image.

writeAll() - Method in class gov.nih.mipav.model.file.FileHistoLUT

Writes the default ModelLUT or ModelRGB to a file.

writeAnalyze(ModelImage, FileWriteOptions, boolean) - Method in class gov.nih.mipav.model.file.FileIO

Writes an analyze file to store the image.

writeAnalyze(ModelImage, ModelImage, int, int, int, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

writeAnalyze(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

writeAnalyze(ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, int, PrintWriter) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

writeAnnotationInVoiAsXML(String, boolean) - Method in class gov.nih.mipav.model.file.FileVOI

Writes VOIText(s) to a .lbl file (XML based)

writeAnnotationXML(boolean) - Method in class gov.nih.mipav.model.file.FileVOI

Writes VOIText(s) to a .lbl file (XML based)

WriteArrayToFileOrDie(String, double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

WriteASF(String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

Writes the shape to a ASF file.

WriteASF0_90(String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape

ASF writer version 0.90.

writeAsUnknownLength - Variable in class gov.nih.mipav.model.file.FileDicomSQ

Whether the sequence should be written using an unknown length

writeAsUnknownLength - Variable in class gov.nih.mipav.model.file.FileDicomSQItem

Whether the sequence should be written using an unknown length

writeAvi(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes an AVI file to store the image.

writeAVITriplet(int, int, ModelLUT, int, int, int, float, float, BitSet) - Method in class gov.nih.mipav.model.file.FileAvi

Writes the AVI BGR triplet.

writeAVITripletC(int, int, ModelRGB, ModelRGB, int, int, int, float, float, BitSet) - Method in class gov.nih.mipav.model.file.FileAvi

Write BGR AVI triplet for color image.

writeAVITripletCFrames() - Method in class gov.nih.mipav.model.file.FileAvi

Write BGR AVI triplet for color image.

writeBinary(byte[], int, int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket

Low level socket write.

writeBlankFrame() - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAbortRQ

Writes the PDU type header.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC

Writes the body of the association accept.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRJ

Writes the body of the association rejection.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ

Writes the body of the association request.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRQ

Writes the body of the association release request.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AReleaseRSP

Writes the body of the association release response.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AsyncOpWindowSubItem

Writes the body of the sub item.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_MaximumSubLength

Writes the maximum sublength out the connection (port).

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDataTF

Filler because it extends DICOM_PDUType which is an abstract class

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType

Writes the body of the item type.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase

DOCUMENT ME!

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext

Writes the body of the presentation context.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContextAccept

Writes the body of an accepted presentation context.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_SCPSCURoleSelect

Writes the body of the SCP/SCU.

writeBody(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation

Writes the body of the user information.

writeBufferByte(byte[], int, int) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a raw byte buffer to a file.

writeBufferDouble(double[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a double buffer to a file.

writeBufferFloat(float[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a float buffer to a file.

writeBufferInt(int[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a int buffer to a file.

writeBufferLong(long[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a int buffer to a file.

writeBufferRGB(int[], int, int) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a RGB buffer to a file.

writeBufferRGB_USHORT(int[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a RGB_USHORT buffer to a file.

writeBufferShort(short[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a raw short buffer to a file.

writeBufferUByte(short[], int, int) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a raw unsigned byte buffer to a file.

writeBufferUInt(long[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes an unisgned int buffer to a file.

writeBufferUShort(int[], int, int, boolean) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a raw unsigned short buffer to a file.

writeByte(byte) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a byte to the outgoing buffers.

writeByte(byte) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes a byte to a file.

writeByte(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeByte(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Write byte.

writeByteIn(byte, DICOM_FileIO) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a byte to the incoming buffers.

writeBytes(String) - Method in class gov.nih.mipav.model.file.FileBase

writeBytes(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Write bytes.

writeChar(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Write char.

writeColorMap(int) - Method in class gov.nih.mipav.model.file.FileSTK

Writes color map to the TIFF file.

writeColorMap(int) - Method in class gov.nih.mipav.model.file.FileSVS

Writes color map to the TIFF file.

writeColorMap(int) - Method in class gov.nih.mipav.model.file.FileTiff

Writes color map to the TIFF file.

writeColourSpecificationBox() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method writes the Colour Specification box

writeConfusionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

writeConfusionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

writeConfusionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

writeConfusionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression

writeConfusionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

writeContiguousCodeStreamBox(byte[]) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method writes the Contiguous codestream box

writeCOR(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a Freesurfer COR file to store the image.

writeData(DICOM_VR, DICOM_Comms) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR

Writes a VR to a DICOM_Comms (network socket).

writeData(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

writeDataFrame(ModelImage) - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

writeDataIn(DICOM_VR, DICOM_Comms, DICOM_FileIO) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_VR

Writes a VR to a DICOM_Comms (network socket).

writeDataProvenance() - Method in class gov.nih.mipav.view.ViewUserInterface

Writes Mipav's data provenance to the default location.

writeDelimitedBytes(String) - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile

Writes a string terminated by the current delimiter.

writeDelimitedBytes(String, char) - Method in class gov.nih.mipav.model.file.DelimitedRandomAccessFile

Allows for writing with a temporary delimiter.

writeDescriptor - Variable in class gov.nih.mipav.model.algorithms.SIFT

writeDescriptor - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeDescriptorCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeDiagonal(ModelImage, int, int[], Vector3f[], Vector3f, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

writeDiagonal(ModelImage, ModelImage, int, int, int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

writeDiagonalSampleCount(ModelImage, ModelImage, int, int, int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

writeDiagonalTest(ModelImage, ModelImage, int, int, int[], Vector3f[], float) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel

writeDicom(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a DICOM file to store the image.

writeDicomSlice(ModelImage, int, FileWriteOptions, FileInfoDicom, FileInfoBase, int, TransMatrix, double, double, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO

Writes a DICOM file on a slice basis.

writeDicomTagsToHeader(Hashtable<String, Hashtable<String, String>>, int) - Method in class gov.nih.mipav.model.file.FileMinc

Writes the dicom-extracted tags contained in tagTable to disk.

writeDouble(double) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeDouble(double, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt

Writes a double as eight bytes to a file.

writeDouble(double, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Writes a double as eight bytes to a file.

writeDouble(double, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes a double as eight bytes to a file.

writeDTIStudioPolyline(String, Vector<VOIContour>, int[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack

WriteEigenImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer

Writes the texture eigen modes as shape-free images.

writeEyeTrackingLog(String) - Static method in class gov.nih.mipav.view.MipavUtil

Record the eye tracking log message.

writeEyeTrackingLog(String, ViewJComponentEditImage) - Static method in class gov.nih.mipav.view.MipavUtil

Record the eye tracking log message.

writeFile(File, Hashtable<FileDicomKey, FileDicomTagInfo>) - Static method in class gov.nih.mipav.model.file.DicomDictionary

Writes the DICOMHashtable given to the file that the CreateDicomFiles points to.

writeFile(File, Hashtable<FileDicomKey, FileDicomTagInfo>, String) - Static method in class gov.nih.mipav.model.file.DicomDictionary

Writes the DICOMHashtable given to the file that the CreateDicomFiles points to.

writeFileFormat() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method reads the codestream and writes the file format wrapper and the codestream to the same file

writeFileTypeBox() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method writes the File Type box

writeFits(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a Fits file to store the image.

writeFloat(float) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeFloat(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Write float.

writeFloat(float, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

Writes a float as four bytes to a file.

writeFloat(float, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Writes a float as four bytes to a file.

writeFloat(float, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes a float as four bytes to a file.

writeFooter() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLWriter

writeFrames - Variable in class gov.nih.mipav.model.algorithms.SIFT

writeFrames - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeFramesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeFunctions() - Method in class gov.nih.mipav.model.file.FileHistoLUT

Writes the transfer and RGB functions to a file.

writeGEGenesis5X(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a GESigna5X file to store the image.

writeGESigna4X(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a GESigna4X file to store the image.

writeGraph(HashSet<Node>, FileWriter, Node, int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Recursively writes a graph to the text file.

writeGraph(HashSet<Node>, PDDocument, PDPageContentStream[], float[], Node, int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Recursively writes a graph to the pdf file.

writeGraphJPG(String, String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the current HyperGraph as a JPG image.

writeGraphPDF(String, String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the current HyperGraph as a PDF.

writeGraphTIF(String, String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the current HyperGraph as a TIF image.

writeGraphTXT(String, String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the current HyperGraph as a text file.

writeGraphXML(String, String) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the current HyperGraph as a xml file.

writeGridOverlay() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

writeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice

DOCUMENT ME!

writeGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice

DOCUMENT ME!

writeGss - Variable in class gov.nih.mipav.model.algorithms.SIFT

writeGss - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeGssCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeHeader() - Method in class gov.nih.mipav.model.file.FileJP2

This function is not used.

writeHeader() - Method in class gov.nih.mipav.model.file.FileSTK

Writes TIFF starting file header.

writeHeader() - Method in class gov.nih.mipav.model.file.FileSVS

Writes TIFF starting file header.

writeHeader() - Method in class gov.nih.mipav.model.file.FileTiff

Writes TIFF starting file header.

writeHeader() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLWriter

writeHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType

Writes the header of the item type.

writeHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUType

Writes the PDU type header.

writeHeader(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase

DOCUMENT ME!

writeHeader(FileInfoBase, FileWriteOptions, int, int) - Method in class gov.nih.mipav.model.file.FileMinc

Writes the header for non-MINC to MINC.

writeHeader(FileInfoMinc) - Method in class gov.nih.mipav.model.file.FileMinc

Writes a header for MINC to MINC.

writeHeader(ModelImage, int, int, String, String) - Method in class gov.nih.mipav.model.file.FileAnalyze

Writes an Analyze header to a separate file.

writeHeader(ModelImage, int, int, String, String) - Method in class gov.nih.mipav.model.file.FileSPM

Writes an SPM header to a separate file.

writeHeader(ModelImage, int, int, String, String, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI

Writes a NIFTI header to a separate file.

writeHeader(ModelImage, int, int, String, String, boolean, int, long[]) - Method in class gov.nih.mipav.model.file.FileMetaImage

Writes a MetaImage header to a separate file.

writeHeader(ModelImage, FileRaw, ArrayList<JTextField>) - Method in class gov.nih.mipav.model.file.FileVista

writes the header

writeHeader(ModelImage, FileWriteOptions, String, String, boolean) - Method in class gov.nih.mipav.model.file.FileImageXML

Writes the XML header information out to the given filename and path.

writeHeader(ModelImage, String, int, int, int, int, boolean) - Method in class gov.nih.mipav.model.file.FilePARREC

writeHeader(ModelImage, String, String, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileNRRD

write NRRD header

writeHeader(RandomAccessFile, FileInfoDicom, boolean) - Method in class gov.nih.mipav.model.file.FileDicom

Writes the tags of the DICOM header.

writeHeader(String) - Method in class gov.nih.mipav.model.algorithms.libdt

writeHeader(String, String, ModelTriangleMesh[], Material, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D

Writes the XML header information, including the ModelTriangleMesh surface out to the given filename and path:

writeHeader(String, String, Material, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D

Writes the XML header information, including the ModelTriangleMesh surface out to the given filename and path:

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileAnalyze

This method is used when saving a 3D image in an array of 2D files.

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileImageXML

Method to save off the header from a 4D image into 3D header files sequentially named (similar to the method in FileRaw).

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileNRRD

Method to save off the header from a 3D image into 2D header files sequentially named (similar to the method in FileRaw).

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileSPM

DOCUMENT ME!

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI

This method is used when saving a 3D image in an array of 2D files.

writeHeader3DTo2D(ModelImage, String, String, FileWriteOptions, boolean, long[]) - Method in class gov.nih.mipav.model.file.FileMetaImage

This method is used when saving a 3D image in an array of 2D files.

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileAnalyze

This method is used when saving a 4D image in an array of 3D files.

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileImageXML

Method to save off the header from a 4D image into 3D header files sequentially named (similar to the method in FileRaw).

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileNRRD

This method is used when saving a 4D image in an array of 3D files.

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileSPM

DOCUMENT ME!

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions, boolean) - Method in class gov.nih.mipav.model.file.FileNIFTI

This method is used when saving a 4D image in an array of 3D files.

writeHeader4DTo3D(ModelImage, String, String, FileWriteOptions, boolean, long[]) - Method in class gov.nih.mipav.model.file.FileMetaImage

This method is used when saving a 4D image in an array of 3D files.

writeHeaderOnly - Variable in class gov.nih.mipav.model.file.FileWriteOptions

Tells the FileBase (FileImageXML only now) to write only the header (.xml) if true

writeHeaderOnly() - Method in class gov.nih.mipav.model.file.FileWriteOptions

Determines whether to write only the header (for now, .xml files) and no raw file...for NDAR SRB transfer

writeICS(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes an ICS file to store the image.

writeidx1CHUNK() - Method in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

writeIFD(int, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileSTK

Writes one 12 byte IFD entry.

writeIFD(int, FileSVS.Type, int, int, int) - Method in class gov.nih.mipav.model.file.FileSVS

Writes one 12 byte IFD entry.

writeIFD(int, FileTiff.Type, int, int, int) - Method in class gov.nih.mipav.model.file.FileTiff

Writes one 12 byte IFD entry.

writeIFDs(int, int, int, int, boolean) - Method in class gov.nih.mipav.model.file.FileSTK

Writes one IFD (Image File Directory).

writeIFDs(ModelImage, int, int, int, int, boolean) - Method in class gov.nih.mipav.model.file.FileSVS

Writes one IFD (Image File Directory).

writeIFDs(ModelImage, int, int, int, int, boolean) - Method in class gov.nih.mipav.model.file.FileTiff

Writes one IFD (Image File Directory).

writeImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen

Writes the image captured from the screen, using currentRectangle as the bounding box of the capture.

writeImage() - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens

Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.

writeImage() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

Writes the image captured from the screen, using currentRectangle as the bounding box of the capture.

writeImage() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface

Write the current frame to disk.

writeImage() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Write the image from the rendering frame into the camera capture frame.

writeImage() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender

writeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Writes a the frame buffer as a .jpg image to disk.

writeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

writeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImageViewer

writeImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

writeImage(ModelImage) - Method in interface gov.nih.mipav.plugins.PlugInFile

Write an image out to the file type handled by this plugin.

writeImage(ModelImage, int, int) - Method in class gov.nih.mipav.model.file.FileRawChunk

This method writes a raw image file (1D-5D).

writeImage(ModelImage, int, int, int, boolean) - Method in class gov.nih.mipav.model.file.FileDicom

Writes a dicom format type image.

writeImage(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileRaw

This method writes a raw image file.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileAfni

Writes a AFNI format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileAnalyze

Writes an analyze format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileCOR

Writes a COR format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileFits

Writes a FITS format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileGESigna4X

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileGESigna5X

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileICS

Writes an ICS format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileImageXML

Writes an XML image with the given options.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileInterfile

Writes an Interfile format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Determines file type from the file name and calls different write functions based on the file type.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileJP2

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMATLAB

Writes a MATLAB format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMetaImage

Writes an MetaImage format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMGH

Writes a MGH or MGZ format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMinc

Writes a MINC format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMincHDF

Writes a MINC format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileMRC

Writes a MRC format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileNIFTI

Writes an NIFTI format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileNRRD

Writes a NRRD format type image.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FilePARREC

Writes a PAR/REC format image and header.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileRaw

This method writes a raw image file.

writeImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileSPM

Writes an SPM format type image.

writeImage(ModelImage, FileWriteOptions, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileIO

Determines file type from the file name and calls different write functions based on the file type.

writeImage(ModelImage, FileWriteOptions, ArrayList<JTextField>) - Method in class gov.nih.mipav.model.file.FileVista

writes the image

writeImage(ModelImage, ModelImage, ModelLUT, ModelLUT, ModelRGB, ModelRGB, int, int, int, float, float, BitSet, int) - Method in class gov.nih.mipav.model.file.FileAvi

This method writes an AVI image file.

writeImage(ModelImage, ModelLUT, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileSTK

This method writes a STK image file.

writeImage(ModelImage, ModelLUT, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileSVS

This method writes a tiff image file.

writeImage(ModelImage, ModelLUT, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileTiff

This method writes a tiff image file.

writeImage(String, String, String, String, float) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph

Writes the HyperGraph graph panel display as an image file.

writeImage3DTo2D(ModelImage, FileWriteOptions, String) - Method in class gov.nih.mipav.model.file.FileRaw

Method to save 3D images to an array of 2D images.

writeImage3DTo2D(ModelImage, FileWriteOptions, String, long[]) - Method in class gov.nih.mipav.model.file.FileRaw

Method to save 3D images to an array of 2D images.

writeImage4DTo3D(ModelImage, FileWriteOptions, String) - Method in class gov.nih.mipav.model.file.FileRaw

Method to write 4D images to an array of 3D image files. the files will be named sequentially with the given # of digits and given starting #.

writeImage4DTo3D(ModelImage, FileWriteOptions, String, long[]) - Method in class gov.nih.mipav.model.file.FileRaw

Method to write 4D images to an array of 3D image files. the files will be named sequentially with the given # of digits and given starting #.

writeImageAuto() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Called when the camera button is clicked.

writeImageHeaderBox() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method writes the Image Header box

writeImageSlicesParRec() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

This method writes out the image slices as raw float

writeImportanceFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

writeIn(byte[], int, int, DICOM_FileIO) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a specified number of bytes from the byte buffer into incomming ByteBuffer list of byte buffers.

writeInt(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeInt(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

writeInt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileWriter

Write int.

writeInt(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering

Writes an int as four bytes to a file.

writeInt(int, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt

Writes an int as four bytes to a file.

writeInt(int, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Writes an int as four bytes to a file.

writeInt(int, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes an int as four bytes to a file.

writeInt32(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a 32 (4 byte) integer to the outgoing buffers.

writeInt32In(int, DICOM_FileIO) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a 32 (4 byte) integer to the incoming buffers.

writeInterfile(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes an Interfile file to store the image.

writeIntW(int, boolean) - Method in class gov.nih.mipav.model.file.FileAvi

Writes an int as four bytes to a file.

writeJimi(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a JIMI file to store the image.

writeJP2HeaderBox() - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

This method writes the JP2Header box

writeJpeg2000(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a JPEG2000 file to store the image.

writeKeyFile() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

creates a keyFile named "patient.key.doc" in the destination directory as specified by the user. the keyFile contains a tab-delimited table of original filenames and the anonymous filename which replaced it; it flushes the keyLog into the keyFile.

writeLabelsToFile(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint

Writes the 'labels' file to disk.

writeLaxOptionsFile() - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

write startup options file which is used during InstallAnywhere to run the executable.

writeLockCount - Variable in class gov.nih.mipav.model.structures.ModelStorageBase

Locking write count.

writeLogHeader() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Writes the column titles of selected statistics calculations to the logModel.

writeLogModelToString() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Converts the current logModel into either a tab-delimited text file or an XML file.

writeLong(long) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeLong(long, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt

Writes a long as eight bytes to a file.

writeLong(long, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Writes a long as eight bytes to a file.

writeLong(long, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes a long as eight bytes to a file.

writeLUT(ModelLUT) - Method in class gov.nih.mipav.model.file.FileHistoLUT

Writes a ModelLUT to a file.

writeLUTandTransferFunction() - Method in class gov.nih.mipav.model.file.FileHistoLUT

Writes the default ModelLUT or ModelRGB to a file.

writeMATLAB(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a MATLAB file to store the image.

writeMeta - Variable in class gov.nih.mipav.model.algorithms.SIFT

writeMeta - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeMetaCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT

writeMetaImage(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a MetaImage file to store the image.

writeMGH(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a MGH or MGZ file to store the image.

writeMinc(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a Minc file to store the image.

writeMincHDF(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes out a MINC 2.0 HDF5 formatted file

WriteModel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Write the AAM model to text file or binary file.

WriteModel(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Writes the complete AAMModel to disk as a .txt and an .amf file.

WriteModel(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS

Writes the complete multi-scale AAMModel to disk as a set of .txt and an .amf files.

WriteModels(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq

Wrapper to write the sequence AAM to disk

WriteModels(String, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq

Writes the sequence AAM to disk as a set of .txt and .amf files.

writeModImg() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

writeModImg(int, int) - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor

writeMRC(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a MRC file to store the image.

writeMultiFrameImage(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.model.file.FileDicom

Writes a dicom format type image.

writeName(String, int, boolean) - Method in class gov.nih.mipav.model.file.FileMinc

Write a string name by writing the length of the string plus padding length, writing the string, and writing the padding.

writeNaugeVOI(VOI) - Method in class gov.nih.mipav.model.file.FileVOI

Writes a single VOI to a file in Nauge format.

writeNextElem(Object, int, boolean) - Method in class gov.nih.mipav.model.file.FileMinc

Writes the next element, switching on the type.

writeNextTag(FileDicomTag, RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.file.FileDicom

Writes a dicom tag to the provided output file.

writeNIFTI(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a NIFTI file to store the image.

writeNode(Node) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLWriter

writeNRRD(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a NRRD file to store the image.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter

Called by some native invokeMethod.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.MouseEventVector

Called by some native invokeMethod.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget

Stream this object to disk.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget

Stream this object to disk.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect

Stream this object to disk.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.SquareClassificationWidget

Stream this object to disk.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget

Stream this object to disk.

writeObject(ObjectOutputStream) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage

writeOpts - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

DOCUMENT ME!

writeOutput() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

writeOutputInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

writeOutputInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

writeOutputInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

writeOutputInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression

writeOutputInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

writePackBit - Variable in class gov.nih.mipav.model.file.FileWriteOptions

TIFF options.

writePackBitImage(ModelImage, int, int) - Method in class gov.nih.mipav.model.file.FilePackBit

This method writes a packed bit image file (1D-5D).

writePadding() - Method in class gov.nih.mipav.model.file.FileMinc

Pads to the nearest 4 byte boundary.

writePaintBitmap(BitSet) - Method in class gov.nih.mipav.model.file.FilePaintBitmap

writePARREC(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a PAR/REC file to store the image.

writePlistOptionsFile() - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

write startup options file which is used during InstallAnywhere to run the executable.

writePlyAsciiMesh(TriMesh, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PlyWriter

writePlyFile() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs

Write the cloud points from the 3 VOIs into one .ply file.

writePlyFile() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction

Write the cloud points from the 3 VOIs into one .ply file.

writePlyFile() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI

Write the cloud points from the 3 VOIs into one .ply file.

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland

writePngPair() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12

writePngPairAll() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator

Write the axial.lst, sagittal.lst and coronal.lst for each fold and each orientation.

writePointVOI(VOI) - Method in class gov.nih.mipav.model.file.FileVOI

Writes a single VOI.POINT to a file MIPAV format.

writePredictionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest

writePredictionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification

writePredictionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability

writePredictionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression

writePredictionFile() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival

WritePredictionImages() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer

Writes the parameter update matrix as shape-free images.

writeQT - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

writeRaw(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a raw file to store the image.

writeRawJP2Header(BEBufferedRandomAccessFile) - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header

writeResults(BSplineRegistration2Df) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D

Save the registration information to a file.

writeResults(BSplineRegistration2Df[]) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D

Save the registration information to a file.

writeResults(BSplineRegistration3Df) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D

Save the registration information to a file.

writeRLE8(int, int, byte[], byte[], byte[]) - Method in class gov.nih.mipav.model.file.FileAvi

Writes the RLE8 encoded LUT index.

writeRTCfile(File) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC_Generator

DOCUMENT ME!

writeRun() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream

writeSequence(RandomAccessFile, FileInfoDicom.VRtype, FileDicomSQ, boolean) - Method in class gov.nih.mipav.model.file.FileDicom

Writes out a sequence tag and its data.

writeSet(BufferedWriter, Enumeration<XMLPSet>) - Method in class gov.nih.mipav.model.file.FileImageXML

writeSet is a helper method, to allow writing set data out to the BufferedWriter with any enumeration.

writeShort(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream

writeShort(short, boolean) - Method in class gov.nih.mipav.model.file.FileBase

Writes a short as two bytes to a file.

writeShort(short, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes a short as two bytes to a file.

writeShort16(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a 16 (2 byte) integer to the outgoing buffers.

writeShort16In(int, DICOM_FileIO) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms

Writes a 16 (2 byte) integer to the incomming buffers.

writeShortInt(int) - Method in class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream

writeShortW(short, boolean) - Method in class gov.nih.mipav.model.file.FileAvi

Writes a short as two bytes to a file.

writeSize(long) - Method in class gov.nih.mipav.model.algorithms.libdt

writeSlice() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW

writeSlice() - Method in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor

writeSpace(double, double, String, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileMinc

Writes the "space", as in xspace, yspace, zspace.

writeSPM(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a SPM file to store the image.

writeStartOptionsFile() - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

writeStatisticFile() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

Writes out the statistics file based on the current logModel

writeSTK(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a STK file to store the image.

writeString(byte[]) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder

Write out the string just uncompressed.

WriteStringToFileOrDie(String, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver

writeTags(RandomAccessFile, FileInfoDicom, FileDicomKey[], FileDicomTag[]) - Method in class gov.nih.mipav.model.file.FileDicom

Writes selected tag values (location specified by editKeys, value specified by editTags), to existing dicom file specified by outputFile.

writeTexture(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.PlaneRender

Stores the ModelImage data as an array of texture maps, with LUT or RGBA color lookup:.

writeTiff(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

Writes a TIFF file to store the image.

writeTmpToManifest(File) - Method in class gov.nih.mipav.plugins.ManifestFile

writeToFile(String) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo

writes transform information to file

writeToKey(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

appends the original string, then two tabs then the newKey, followed by a newline to the keylog. old keylog is not overwritten.

writeToLog(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

appends the name string, in between parens trailed by a colon.

writeToLog(String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories

Method to append the string to the log, adding a newline to the end, if requested, and appending a colon when not adding a newline.

writeTransferFunction(RandomAccessFile, TransferFunction, String) - Method in class gov.nih.mipav.model.file.FileHistoLUT

Write out a transfer function to a file.

writeTriangleMeshXML(ModelImage, ModelTriangleMesh[], SurfaceAttributes, Color4f) - Static method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurface_J3D

Writes a ModelTriangleMesh and Material to disk in the xml format, based on surface.xsd.

writeTriangleMeshXML(String, ModelImage, TriMesh) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM

Writes a TriMesh to disk in the xml format, based on surface.xsd.

writeUnsignedShort(short, boolean) - Method in class gov.nih.mipav.model.file.FileDicomBase

Writes an unsigned short as two bytes to a file.

writeValuesArray(Object[], int, boolean) - Method in class gov.nih.mipav.model.file.FileMinc

Writes the array, switching on the type.

WriteVarianceMap(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel

Plots the variance of each pixel in the model over the training set into the mean shape and saves the image.

writeVecDouble(String, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.libdt

writeVecVecDouble(String, Vector<Vector<Double>>) - Method in class gov.nih.mipav.model.algorithms.libdt

writeVersionNumber - Static variable in class gov.nih.mipav.model.file.FileNRRD

version number of NRRD for writing

writeVista(ModelImage, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO

writes Vista format files

writeVMOptionsFile(File) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation

Write out changes to the vmoptions file used to set the VM max heap size.

writeVOI(VOI, boolean) - Method in class gov.nih.mipav.model.file.FileVOI

Writes a single VOI to a file MIPAV format.

writeVTKLegacyPolyline(String, Vector<VOIContour>) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileFiberTrack

writeXML() - Method in class gov.nih.mipav.model.file.FileDataProvenance

Writes the data provenance into xml formatted file

writeXML(ModelImage, FileWriteOptions, boolean) - Method in class gov.nih.mipav.model.file.FileIO

Writes the image in our MIPAV XML format.

writeXML(VOI, boolean) - Method in class gov.nih.mipav.model.file.FileVOI

writeXML(VOI, boolean, boolean) - Method in class gov.nih.mipav.model.file.FileVOI

Writes VOI to an XML formatted file.

writeXML(File) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraConfiguration

writeXMLpolylines(String, Vector<VOIContour>) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceVTKXML_WM

Output a collection of polylines as vtk xml

writeXMLsurface(String, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceVTKXML_J3D

Saves as vtk xml

writeXMLsurface(String, ModelTriangleMesh, Material, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D

Writes the XML file information, including the ModelTriangleMesh surface out to the given filename and path:

writeXMLsurface(String, Material, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D

Writes the XML file information, including the ModelTriangleMesh surface out to the given filename and path:

writeXMLsurface(String, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM

Writes the XML file information, including the surface out to the given filename and path:

writeXMLsurface(String, TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceVTKXML_WM

Output TriMesh as vtk xml

writeXMLsurface_WM(String, MaterialState, float, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM

Writes the XML file information, including the surface out to the given filename and path:

wrk - Variable in class gov.nih.mipav.model.algorithms.curfit

WRSYM1(int, int, int, double[], double[], double[], boolean, boolean, String, int, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WRSYM2(int, int, double[], boolean, int, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WRSYM3(int, int, boolean, int, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

WRTAIL(int, int, int, RandomAccessFile) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

ws - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

wsAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed

DOCUMENT ME!

WSHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed

WSHED - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed

WSHED - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed

WSHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed

WSHED - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

WSHED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed

DOCUMENT ME!

WSinc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

DOCUMENT ME!

WSINC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform

Windowed sinc interpolation.

WSINC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform

Windowed sinc interpolation.

wSinc2D(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

2D windowed sinc function.

wSinc2DC(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

2D windowed sinc function for color.

wSinc3D(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

3D windowed sinc function.

wSinc3DC(double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

3D windowed sinc function for color (3 channel images).

wSincXT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

wSincYT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

wSincZT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

wt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

wt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

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wt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

wt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

wt - Variable in class gov.nih.mipav.model.algorithms.ODE

wt - Variable in class gov.nih.mipav.model.algorithms.ODEEP

wt - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

wt1(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

WTD_SUM - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality

wted - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

WTHETA(double, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

wtn(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

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wVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

wVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

wVal - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor

DOCUMENT ME!

Wvex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh

WVPMatrix - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop

WW_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

X

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.P

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.SData

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

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x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

DOCUMENT ME!

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

x - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

current x position.

x - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.FunctionSample

x - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem

x - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest

x - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback

x - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest

x - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric

Input argument

x - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient

x - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator

x - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator

x - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator

x - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator

x - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D

'pointer' to x coordinate

x - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameDisc

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc

x - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse

x - Variable in class gov.nih.mipav.model.algorithms.curev

x - Variable in class gov.nih.mipav.model.algorithms.curfit

x - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec

x - Variable in class gov.nih.mipav.model.algorithms.DAgostinosKsquaredTest

x - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute

x - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

x - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDim3

x - Variable in class gov.nih.mipav.model.algorithms.Gamma

input argument Note that the gamma function is not defined for x equal to zero or a negative integer

x - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric

Input argument

x - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel

x - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_problem

x - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame.point

x - Variable in class gov.nih.mipav.model.algorithms.Lmmin

x is an array of length n.

x - Variable in class gov.nih.mipav.model.algorithms.LsqFit

x - Variable in class gov.nih.mipav.model.algorithms.NelderMead.point_t

x - Variable in class gov.nih.mipav.model.algorithms.NelderMead

x - Variable in class gov.nih.mipav.model.algorithms.NL2sol

x - Variable in class gov.nih.mipav.model.algorithms.ODE

x - Variable in class gov.nih.mipav.model.algorithms.ODEEP

x - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient

x - Variable in class gov.nih.mipav.model.algorithms.Psi

input argument

x - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2

x - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint

< Integer s coordinate.

x - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Cvec

x - Variable in class gov.nih.mipav.model.algorithms.splev

x - Variable in class gov.nih.mipav.model.algorithms.Statistics

x - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest

x - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop

Storage for VOI.

x - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.StageLabel

x - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

x - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex

x - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.vertex_node

x - Variable in class gov.nih.mipav.model.structures.ModelLUT

The X coordinates of the transfer functions.

x - Variable in class gov.nih.mipav.model.structures.ModelRGB

The X coordinates of the transfer functions.

x - Variable in class gov.nih.mipav.model.structures.Point3D

X coordinate of point.

x - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener

X and Y coordinates where drawing started.

x - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Dimensions of rectangle to draw.

x - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

Three arrays to save the coordinates of the LUT's transfer fucntion. z[] not used.

x - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

control points coordinate of LUT transfer function .

x - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

Three arrays to save the coordinates of the LUT's transfer fucntion. z[] not used.

x - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse

Canvas center x and y.

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar slider values.

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint

x-position.

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Point

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.Item

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem

array of sparse feature nodes

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_problem

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.pt

x - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy.point

x - Variable in class gov.nih.mipav.view.RubberbandLine

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.RubberbandProtractor

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

x - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

control points coordinate of LUT transfer function .

x() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point

x() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point2

X - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir

X - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM

X - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

X - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

X - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes

X - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

X - Variable in class gov.nih.mipav.view.ViewJComponentFunct

DOCUMENT ME!

X() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

X() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

x_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

x_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage

x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.Fixture

x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest

x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

x_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

x_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

DOCUMENT ME!

x_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

DOCUMENT ME!

x_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

DOCUMENT ME!

X_AXIS - Static variable in interface gov.nih.mipav.model.algorithms.ContourPlot.InteractionConstants

X_AXIS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip

Flip along X axis.

X_AXIS - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

X axis constant.

X_AXIS - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes

X_AXIS_180 - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the x axis 180 degrees.

X_AXIS_MINUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the x axis -90 degrees (or 270 degrees).

X_AXIS_PLUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the x axis 90 degrees.

X_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an x clip slice.

X_CLIPSLICE_NEG - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an -x clip slice.

x_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

x_D - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem

X_density - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

X_DERIVATIVE_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

DOCUMENT ME!

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

DOCUMENT ME!

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

DOCUMENT ME!

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

DOCUMENT ME!

x_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

DOCUMENT ME!

x_init_robust - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt

X_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian

X-shaped kernel, from 1 corner to opposite corner.

X_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode

X-shaped kernel, from 1 corner to opposite corner.

x_label - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

x_last - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

x_loc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

x_mean - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.SData

x_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer

x_out - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

X_PROJECTION - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

Project along the X-Axis.

X_SLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an x slice.

x_square - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Kernel

x_square - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Kernel

x_tol - Variable in class gov.nih.mipav.model.algorithms.LsqFit

x_values - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback

x0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle

x0 - Variable in class gov.nih.mipav.model.algorithms.NESolve

x0 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t

x component offset compared to the whole image

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t

x component offset compared to the whole image

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t

XOsiz: horizontal offset from the origin of the reference grid to the left side of the image area

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t

x0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000

x0 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

DOCUMENT ME!

x0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

x0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

x0Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

DOCUMENT ME!

x1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

x1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t

Xsiz: width of the reference grid

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t

x1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000

x1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

x1 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart

X1 - Variable in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel

x13 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

x1Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

x1Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

x1real - Variable in class gov.nih.mipav.model.algorithms.CubicEquation

x1Vector - Variable in class gov.nih.mipav.view.ViewJComponentGraph

x2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

x2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

x2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart

x2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction

X2 - Variable in class gov.nih.mipav.model.algorithms.SIFT.FitMosaicModel

x23 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

x2dist(double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

x2imag - Variable in class gov.nih.mipav.model.algorithms.CubicEquation

x2Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

x2Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

x2real - Variable in class gov.nih.mipav.model.algorithms.CubicEquation

x2Vector - Variable in class gov.nih.mipav.view.ViewJComponentGraph

x3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

x3 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

x3imag - Variable in class gov.nih.mipav.model.algorithms.CubicEquation

x3Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

x3Minrm - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

x3real - Variable in class gov.nih.mipav.model.algorithms.CubicEquation

x4 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x4 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x4 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

x5 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x5 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x6 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x6 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x7 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x7 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

x8 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

x8 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

xa - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

xadj - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t

xArray - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

xAxis - Variable in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

XAXIS - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

xAxisCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

xAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

Actual button indices

xAxisLabel - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

xAxisLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

xAxisLabelField - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

xAxisLabelText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

xAxisRot - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

612 X axis rotation.

xb - Variable in class gov.nih.mipav.model.algorithms.curfit

xb - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

xb - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node

xBaseEnd - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

144 - Ending number for baselines.

xBaseSt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

142 - Starting number for baselines.

XBM - Static variable in class gov.nih.mipav.model.file.FileUtility

extension: .xbm.

xBounds - Variable in class gov.nih.mipav.model.structures.VOI

The x - dimension bounds: xBounds [0] = min and xBounds[1] = max.

xBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

xBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

xBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

Cropped region bounding.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

DOCUMENT ME!

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

x dimension bounds

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

X cropped region bounds.

xBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

X cropped region bounds.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

xBox, yBox, zBox from the parent scene.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

x, y, z box size.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

xBox, yBox and zBox values from the parent frame.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Parent frame box value.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

xBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

xBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

x, y, z box size.

xBuffer - Variable in class gov.nih.mipav.model.structures.PointStack

DOCUMENT ME!

xbuffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller

xbuffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller

xButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

xCameraMove - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter values.

xCameraMoveText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter text-field.

xCameraTurn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter values

xCameraTurnText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter text-field

xCenter - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

xCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

xCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

xCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

xCenterLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

xCenterText - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

xcheck(LSQR.lsqr_solver_ez, int, int, RandomAccessFile, double, double, double, double[], double[], double[], double[], double[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR

!

xClick - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

xClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z, arbitrary clipping slider frames.

xColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

color of the crosshairs.

xCOM - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass

x coordinate for center of mass, normalized by image resolution

xCoords - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration

Buffers used to save the X coordinates for the points that make up a VOI.

xCoords - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xCor(int, double) - Static method in class gov.nih.mipav.model.structures.VOIText

xCursorAdjustment - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

xd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint

xd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor

xD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

xD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

xD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

xD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3

xData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd

xDataRound - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Storage location for the 1D gaussian kernels.

xDerivativeDirections - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

xdiff - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

xdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

xdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

xdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

xdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

xdim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image size in the x dimension.

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Length of the x dimension in pixels.

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

dimensions and length

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

The slice size in the x dimension.

xDim - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

xDIm of 4d image

xDim - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

xDim - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation

The image's x dimension.

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

image dimensions.

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Image dimensions.

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

X dimension length

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

xDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2

xDim - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

xDim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult

x and y dimensions of image

xDim - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileBFLOAT

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileBioRad

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Number of pixels in x dimension.

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Image X, Y, Z dimension.

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z and time dimension values.

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

ModelImage image array dimensions:

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dimensions of image A.

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dimensions of image A.

xDim - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Dimensions of image A.

xDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z and time dimension values.

xDim - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

image x, y, z dimensions in FileCoordinates

xDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Note that xDim and yDim refer to destImage, while zDim and tDim refer to imageA.

xDim - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xDim - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices

X dimension of the image.

Xdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

X dimension of the image.

xDim2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

xDim4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

xdimA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

xdimA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Dimensions of match image and base image.

xDimA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

xdimB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

xDimDest - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle

xDimE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

xDimE - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

xdimM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

xDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

xDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

xDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

xDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

DOCUMENT ME!

xDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

DOCUMENT ME!

xDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

DOCUMENT ME!

xdimTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

textfields *

xDirections - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

xDirections - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

xe - Variable in class gov.nih.mipav.model.algorithms.curfit

xEnd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

xEnd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

xEnd2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

xEnd2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

xenhEnd - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

148 - Ending number for enhanced scans.

xenhSt - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

146 - Starting number for enhanced scans.

XENPT - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

xf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

xf - Variable in class gov.nih.mipav.model.algorithms.NESolve

Xf - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

Xf - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

xFilterSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

xFilterSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

xFilterSizeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

xFilterTopLeft - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

xFinish - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

values obtained when mouseReleased

xfrm - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

xfrm - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample

DOCUMENT ME!

xfrm - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI

xfrm - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xfrm - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xfrmBA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares

The transformation matrix that describes the transform from point set B to point set A.

xfrmBA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation

The transformation matrix that describes the transform from point set B to point set A.

xfrmBA - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xfrmBA - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xfrmD - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xfrmD - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xfrmH - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xfrmH - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xGridButtonGroup - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xGridCheckBoxList - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xGridCheckBoxPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xGridEvenSpacedButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xGridLineField - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

xGridLineLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

xGridLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

xGridScrollPane - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xGridUserPositions - Variable in class gov.nih.mipav.view.ViewJComponentGraph

xGridUserSpacedButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph

xhi_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xi - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2

xi - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

XIDST - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

xij - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats

xinit(int, double[], int) - Method in class gov.nih.mipav.model.algorithms.NL2sol

xInit - Variable in class gov.nih.mipav.model.algorithms.FitGaussian

Center parameter

xInvRange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

XIVAL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

xLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate label.

xLabel - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

in 4D x location of slice numbering string

xLabel - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

xLabel - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

xLabelEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate label.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue2

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.LinearEquations2

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlaenv(int, int) - Method in class gov.nih.mipav.model.structures.jama.SVD

This is a port of version 3.1 LAPACK auxiliary routine XLAENV.

xlatDestBrowse - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

xlatDestDirectory - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

xlatDestDirText - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

DOCUMENT ME!

xlatDestinationUsage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory

Defines options for WRITE, OVERWRITE, APPEND for the xlat file.

xlb_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

XLEN - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame

XLEN - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy

xlo_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

xLocation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

x value of the origin.

xLocation - Variable in class gov.nih.mipav.model.file.FileInfoDicom

DICOM x coordianate of the slice location.

xlogx(double) - Method in class gov.nih.mipav.model.algorithms.SVM

xlsub - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

xlusup - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

xLUTa - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

Used to store the transfer function points for remapping to the LUT.

xLUTb - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

DOCUMENT ME!

xMaskMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

xMaskMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

xMaskSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

xMass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

xmax - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox

xmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

xMax - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

xMedian - Variable in class gov.nih.mipav.model.algorithms.FitLorentz

Statistical median

xmin - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox

xmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

xMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

xml - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticFileFormatOptions

Radio button to choose a XML file.

xml - Variable in class gov.nih.mipav.view.JPanelEditDate

DOCUMENT ME!

xml - Variable in class gov.nih.mipav.view.JPanelEditTime

DOCUMENT ME!

XML - Static variable in class gov.nih.mipav.model.file.FileUtility

MIPAV XML file format. mipav xml image format. extension: .xml

XML_DATE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_DOB - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_ENCODING - Static variable in class gov.nih.mipav.model.file.FileDataProvenance

The charset the XML file is written in.

XML_ENCODING - Static variable in class gov.nih.mipav.model.file.FileVOI

The charset the XML file is written in.

XML_ENCODING - Static variable in class gov.nih.mipav.model.file.FileXML

XML encoding string.

XML_HEADER - Static variable in class gov.nih.mipav.model.file.FileDataProvenance

The XML version description header.

XML_HEADER - Static variable in class gov.nih.mipav.model.file.FileVOI

The XML version description header.

XML_HEADER - Static variable in class gov.nih.mipav.model.file.FileXML

XML header string.

XML_LINKEDIMAGE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_MODALITY - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility

MIPAV XML file format.

XML_RACE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_SETORPARAM - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_SEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_TIME - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XML_VALUETYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor

DOCUMENT ME!

XMLAnnotationHandler(VOIVector) - Constructor for class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

Construct our custom XML data handler.

XMLAttributes(String, String) - Constructor for class gov.nih.mipav.model.file.FileXML.XMLAttributes

XMLCoordHandler(VOI) - Constructor for class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler

Construct our custom XML data handler.

XMLCoordHandler(VOI, boolean) - Constructor for class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler

Construct our custom XML data handler.

XMLErrorHandler - Class in gov.nih.mipav.model.file

Error handler to report errors and warnings from the XML parser.

XMLErrorHandler - Class in gov.nih.mipav.view.dialogs

Error handler to report errors and warnings from the XML parser.

XMLErrorHandler - Class in gov.nih.mipav.view.renderer.WildMagic.TBI

Error handler to report errors and warnings from the XML parser.

XMLErrorHandler() - Constructor for class gov.nih.mipav.model.file.XMLErrorHandler

XMLErrorHandler() - Constructor for class gov.nih.mipav.view.dialogs.XMLErrorHandler

XMLErrorHandler() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.TBI.XMLErrorHandler

xmlLinked - Variable in class gov.nih.mipav.view.ViewOpenFileUI

DOCUMENT ME!

xmlLinkedFilename - Variable in class gov.nih.mipav.model.file.FileWriteOptions

XML option.

XMLParameter - Class in gov.nih.mipav.model.file

Title: Parameter

XMLParameter(String) - Constructor for class gov.nih.mipav.model.file.XMLParameter

Creates a new parameter by name.

XMLPSet - Class in gov.nih.mipav.model.file

Title: PSet

XMLPSet(String) - Constructor for class gov.nih.mipav.model.file.XMLPSet

Create a new parameter set with the given description.

xMod - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

xMod - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

XMP - Static variable in class gov.nih.mipav.model.file.FileSVS

XMP - Static variable in class gov.nih.mipav.model.file.FileTiff

xmtFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

278 Center Frequency (0.1 Hz).

xmtGain - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

248 Actual transmit gain (.1 db).

xN - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

DOCUMENT ME!

xN - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

xN - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

DOCUMENT ME!

XN - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

xNegClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z negative clipping slider frames.

xo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

xObjectRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation angle parameter values.

xObjectRotateText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation parameter text-field.

xold_tbase - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

DOCUMENT ME!

xOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

xOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

xOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace

xOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

xOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

xOpacity - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar opacity slider values.

xOpacitySlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z opacity slider values.

xOpacitySlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z opacity slider values.

xor - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

radio button

XOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations

operation constants

XOR - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

xOrg - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

xOrg - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xOrg - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xOrientA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

xOrientB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

xp - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox.diffGaussians

xPad - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

xPG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

X coord of seed point.

XPLANE - Static variable in class gov.nih.mipav.model.structures.VOIBase

Used in determining if all points on the contour have the same x-value

XPM - Static variable in class gov.nih.mipav.model.file.FileUtility

extension: .xpm.

xPoint - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

xPointInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

xPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

DOCUMENT ME!

xPoints - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

xPointsDraw - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

xPos - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

xPos - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

xPosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

xPosition - Variable in class gov.nih.mipav.model.file.FileSVS

xPosition - Variable in class gov.nih.mipav.model.file.FileTiff

XPOSITION - Static variable in class gov.nih.mipav.model.file.FileSVS

XPOSITION - Static variable in class gov.nih.mipav.model.file.FileTiff

xPres - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

xPres - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Probe x, y, z position.

xProbe - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Probe x, y, z position.

xPts - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

xPts - Variable in class gov.nih.mipav.model.structures.VOIBase

xr - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

xRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

xRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

xRandom - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns

xRandom - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall

xRandom - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList

xRangeText - Variable in class gov.nih.mipav.view.JPanelHistogram

xRangeTextA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextA - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextB - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

X range text field in the imageA, B and GM image A, B histogram dialog.

xRangeTextGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

X range text field in the imageA, B and GM image A, B histogram dialog.

XRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Transfer function y-ratios:

XRAY_ANGIOGRAPHY - gov.nih.mipav.model.file.FileInfoBase.Modality

Image modality X ray angiography.

XRAY_ANGIOGRAPHY - Static variable in class gov.nih.mipav.model.file.FileInfoBase

Image modality X ray angiography.

xRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image resolution in the x dimension.

xRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

resolutions

xRes - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation

The image's x resolution.

xRes - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

xRes - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

X pixel resolution.

xRes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

X and Y resolution.

xRes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The resolutions of the (possibly respampled) image (the one shown in the renderer).

xRes - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xRes - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xresA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

xresA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

xresB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

xresB - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

xresM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

xResol - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

XRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

XRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

XRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

XRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

Xroot(double, double) - Method in class gov.nih.mipav.model.algorithms.CubicEquation

xRotation - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

xRotation - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xRotation - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

XROTATION - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

xRRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

xRSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

xs - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

xs - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

xS - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

xsave_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

xScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

xScale - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

xscaleBF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

xscaleText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Brute-force registration parameters:.

xScreen - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

xScreen - Static variable in class gov.nih.mipav.view.ViewJFrameImage

Width of the display screen.

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Width of the display screen.

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

xScreen - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

xSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

xSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

xSep - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

xSep - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

xSeries - Variable in class gov.nih.mipav.model.algorithms.Lmmin

xSeries - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

xSeries - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

xSeries - Variable in class gov.nih.mipav.model.algorithms.NLFittedFunction

Original xData

xsize - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

xsize - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

xSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

xSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the ZY plane.

xSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Which slice is currently displayed in the ZY plane.

xSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Which slice is currently displayed in the ZY plane.

xSliceInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the ZY plane.

xSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

num x slices of src image

xSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

xSliderS - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

slider that controls the probe moves along the x direction.

xSource - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

xSource - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

xSource - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

xSource - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

DOCUMENT ME!

xSource - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

xSource - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

xSpace - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

number of pixels in x direction.

xSpace - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

xSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

xSpaceField - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

xSpacing - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

xStart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

xStart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

xStart - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator

xStart - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

xStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

xStart - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

xStart - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

values obtained when mousePressed

xStdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

xsubp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

xsup - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

xt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

xt - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

xt - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node

xt - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.st_node

xTalLabel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

xTar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

xTar - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

xText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate text box.

xTextEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate text box.

xTick - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

xticks - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

xtol - Variable in class gov.nih.mipav.model.algorithms.Lmmin

xtol is a nonnegative input variable.

XTv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction

xub_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xUnits - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

The units printed to the logModel, set in createNewLogile

xusub - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.GlobalLU_t

xv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

Xv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction

Xv(double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction

xValue - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

xValueArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping

xValueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

xValuesAdded - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

xValuesList - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

list of x values to send to algorithm

xValueText - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping

xvBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

DOCUMENT ME!

xVisible - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

xVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z triplanar.

xvTable - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

xvText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

DOCUMENT ME!

XWTRAN(int, int, double[], double[], double[], double[][], double[][], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

xX - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

XX - gov.nih.mipav.model.file.FileDicomTagInfo.VR

xxhi - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xxlo - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

xxOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

xxOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace

xxOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

xy - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

XY - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

xyAspectRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

xyCoords - Variable in class gov.nih.mipav.view.ViewJFrameGraph

this is a list of the x,y coords of the voi's boundary

XYCoords - Variable in class gov.nih.mipav.view.ViewJComponentFunct

xy coordinates of voi boundar

xyo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

xyold_tbase - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSpline

DOCUMENT ME!

xyOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

xyOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace

xyOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

xyv - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

XYZ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

xyzAspectRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform

DOCUMENT ME!

xyzExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

xyzExtents - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter

xyzSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter

XZ - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

Y

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.P

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

DOCUMENT ME!

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle

DOCUMENT ME!

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Pixel

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid.PixelGridNode

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeNode

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

current y position.

y - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem

y - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest

y - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest

y - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator

y - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator

y - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator

y - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator

y - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.PointeredPoint2D

'pointer' to y coordinate

y - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameDisc

< center x-coordinate

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameEllipse

< center x-coordinate

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc

< center x-coordinate

y - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse

< center x-coordinate

y - Variable in class gov.nih.mipav.model.algorithms.curfit

y - Variable in class gov.nih.mipav.model.algorithms.CVODES.HermiteDataMemRec

y - Variable in class gov.nih.mipav.model.algorithms.CVODES.PolynomialDataMemRec

y - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt.PointAttribute

y - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

y - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDim3

y - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

y - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver

y - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q

y - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_problem

y - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame.point

y - Variable in class gov.nih.mipav.model.algorithms.ODE

y - Variable in class gov.nih.mipav.model.algorithms.ODEEP

y - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlSiftKeypoint

< x coordinate.

y - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Cvec

y - Variable in class gov.nih.mipav.model.algorithms.splev

y - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest

y - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop

Storage for VOI.

y - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.StageLabel

y - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_pi_iterator_t

FIXME DOC

y - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.gpc_vertex

y - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.lmt_node

y - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.sb_tree

y - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.vertex_node

y - Variable in class gov.nih.mipav.model.structures.Point3D

Y coordinate of point.

y - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.GlassPaneListener

X and Y coordinates where drawing started.

y - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen.MyGlassPane

Dimensions of rectangle to draw.

y - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove.StandardMouse

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse

Canvas center x and y.

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.StandardKey

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.MouseWheel

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouse

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender.RightMouseDragged

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView.StandardMouse

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar slider values.

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint

y position.

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Point

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.MouseWheel

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouse

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender.RightMouseDragged

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.KeyPressedEvent

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelMouseControl

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.MouseWheelPathPlanning

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.RightMouse

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem

an array containing the target values

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_problem

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.pt

y - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy.point

y - Variable in class gov.nih.mipav.view.RubberbandLine

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.RubberbandProtractor

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

y - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

DOCUMENT ME!

y() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point

y() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point2

Y - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir

Y - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering

Y - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

Y - Variable in class gov.nih.mipav.view.ViewJComponentFunct

DOCUMENT ME!

Y() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

Y() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

y_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect

y_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage

y_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest

y_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

y_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

y_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

y_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

DOCUMENT ME!

y_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

DOCUMENT ME!

y_angle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

DOCUMENT ME!

Y_AXIS - Static variable in interface gov.nih.mipav.model.algorithms.ContourPlot.InteractionConstants

Y_AXIS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip

Flip along Y axis.

Y_AXIS - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Y axis constant.

Y_AXIS - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes

Y_AXIS_180 - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the y axis 180 degrees.

Y_AXIS_MINUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the y axis -90 degrees (or 270 degrees).

Y_AXIS_PLUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the y axis 90 degrees.

Y_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an y clip slice.

Y_CLIPSLICE_NEG - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an -y clip slice.

Y_density - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct

Y_DERIVATIVE_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit

DOCUMENT ME!

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseProperties

DOCUMENT ME!

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate

DOCUMENT ME!

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection

DOCUMENT ME!

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate

DOCUMENT ME!

y_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation

DOCUMENT ME!

y_label - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

y_last - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior

DOCUMENT ME!

y_loc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

y_lower - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

y_lower - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

y_max - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

y_max - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

y_min - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

y_min - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

y_out - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox

Y_PROJECTION - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

Project along the Y-Axis.

y_scaling - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

y_scaling - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

Y_SLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an y slice.

y_upper - Variable in class gov.nih.mipav.model.algorithms.LIBSVM

y_upper - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_scale

y0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle

y0 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t

y component offset compared to the whole image

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t

y component offset compared to the whole image

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t

YOsiz: vertical offset from the origin of the reference grid to the top side of the image area

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t

y0 - Variable in class gov.nih.mipav.model.file.FileJPEG2000

y0 - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

DOCUMENT ME!

y0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

y0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

y0Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircle

y1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

y1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_t

Ysiz: height of the reference grid

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_cblk_dec_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tile_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_tilecomp_t

y1 - Variable in class gov.nih.mipav.model.file.FileJPEG2000

y1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

y13 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

y1Vector - Variable in class gov.nih.mipav.view.ViewJComponentGraph

y2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

y2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

y2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction

y23 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

y2Vector - Variable in class gov.nih.mipav.view.ViewJComponentGraph

y3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext

y3 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

y4 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y4 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y4 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle

y5 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y5 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y6 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y6 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y7 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y7 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

y8 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

y8 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

ya - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

yanlyz() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

yArray - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

yawAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Rotation yaw angle.

yawAngle - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Rotation yaw angle.

yawTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior

Yaw transform.

yawTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer

Yaw transform.

yAxis - Variable in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

YAXIS - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

yAxisCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

yAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

Actual button indices

yAxisLabel - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

yAxisLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

yAxisLabelField - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

yAxisLabelText - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

yAxisRot - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

616 Yaxis rotation.

ybard_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

yBounds - Variable in class gov.nih.mipav.model.structures.VOI

The y - dimension bounds: yBounds [0] = min and yBounds[1] = max.

yBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

yBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

yBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

DOCUMENT ME!

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

y dimension bound

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Y cropped region bounds.

yBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

Y cropped region bounds.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

xBox, yBox, zBox from the parent scene.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

x, y, z box size.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

xBox, yBox and zBox values from the parent frame.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Parent frame box value.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

yBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

yBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

x, y, z box size.

YBR_FULL_422 - Variable in class gov.nih.mipav.model.file.FileRaw

yBuffer - Variable in class gov.nih.mipav.model.structures.PointStack

DOCUMENT ME!

yButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

yCameraMove - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter values.

yCameraMoveText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter text-field.

yCameraTurn - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter values

yCameraTurnText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter text-field

YCBCR_COEFFICIENTS - Static variable in class gov.nih.mipav.model.file.FileSVS

YCBCR_COEFFICIENTS - Static variable in class gov.nih.mipav.model.file.FileTiff

YCBCR_POSITIONING - Static variable in class gov.nih.mipav.model.file.FileSVS

YCBCR_POSITIONING - Static variable in class gov.nih.mipav.model.file.FileTiff

YCBCR_SUBSAMPLING - Static variable in class gov.nih.mipav.model.file.FileSVS

YCBCR_SUBSAMPLING - Static variable in class gov.nih.mipav.model.file.FileTiff

YCbCrPositioning - Variable in class gov.nih.mipav.model.file.FileSVS

YCbCrPositioning - Variable in class gov.nih.mipav.model.file.FileTiff

YCbCrSubsampleHoriz - Variable in class gov.nih.mipav.model.file.FileSVS

YCbCrSubsampleHoriz - Variable in class gov.nih.mipav.model.file.FileTiff

YCbCrSubsampleVert - Variable in class gov.nih.mipav.model.file.FileSVS

YCbCrSubsampleVert - Variable in class gov.nih.mipav.model.file.FileTiff

YCbCrtoRGB(float[], int[], int[], int[]) - Method in class gov.nih.mipav.model.file.FileSVS

YCbCrtoRGB(float[], int[], int[], int[]) - Method in class gov.nih.mipav.model.file.FileTiff

ycc_rgb_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg

ycc_rgb_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg

YCC_RGB_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg

ycck_cmyk_convert(libjpeg.jpeg_decompress_struct, byte[][][], int, byte[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg

ycck_cmyk_convert(libjpeg.jpeg_decompress_struct, short[][][], int, short[][], int, int) - Method in class gov.nih.mipav.model.file.libjpeg

YCCK_CMYK_CONVERT - Static variable in class gov.nih.mipav.model.file.libjpeg

yCenter - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

yCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

yCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

yCenter - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

yCenterLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

yCenterText - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

yClick - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

yClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z, arbitrary clipping slider frames.

yColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

yCOM - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass

y coordinate for center of mass, normalized by image resolution

yCoords - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration

Buffers used to save the Y coordinates for the points that make up a VOI.

yCoords - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

yCor(int, double) - Static method in class gov.nih.mipav.model.structures.VOIText

YCrCbRequired - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

yCursorAdjustment - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

yd - Variable in class gov.nih.mipav.model.algorithms.CVODES.HermiteDataMemRec

yd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint

yd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor

yD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

yD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

yD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

yD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitExponential

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitGaussian

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLaplace

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLine

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitLorentz

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitMultiExponential

ydata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting.FitRayleigh

ydata - Variable in class gov.nih.mipav.model.algorithms.LsqFit

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation.FitCorrelationModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance.FitCovarianceModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit24DModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.Fit25HModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3.FitDEMRI3ConstrainedModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.Fit24DModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitIntensityProfile

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel3

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModelqd

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModel

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

yData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel

yDataFitted - Variable in class gov.nih.mipav.model.algorithms.NLFittedFunction

Fitted y-data, based on original x points.

yDataRound - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Storage location for the 1D gaussian kernels.

yDerivativeDirections - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

ydiff - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

ydim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

ydim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

ydim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

ydim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

ydim - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image size in the y dimension.

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Length of the y dimension in pixels.

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

dimensions and length

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt

The slice size in the y dimension.

yDim - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

yDim of 4d image

yDim - Variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform

yDim - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation

The image's y dimension.

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

image dimensions.

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Image dimensions.

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

Y dimension length

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter

yDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.algorithms.HartleyTransform2

yDim - Variable in class gov.nih.mipav.model.algorithms.ImageQuality

yDim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult

x and y dimensions of image

yDim - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileBFLOAT

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileBioRad

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Number of pixels in y dimension.

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Image X, Y, Z dimension.

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z and time dimension values.

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

ModelImage image array dimensions:

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dimensions of image A.

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dimensions of image A.

yDim - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Dimensions of image A.

yDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z and time dimension values.

yDim - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

image x, y, z dimensions in FileCoordinates

yDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Note that xDim and yDim refer to destImage, while zDim and tDim refer to imageA.

yDim - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yDim - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices

Y dimension of the image.

Ydim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

Y dimension of the image.

yDim2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

ydimA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

ydimA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Dimensions of match image and base image.

yDimA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

ydimB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

yDimE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction

DOCUMENT ME!

yDimE - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

ydimM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

yDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice

yDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice

yDimSource - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice

yDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration

yDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration

yDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

ydimTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor

textfields *

yDirections - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager

yDirections - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

year - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X

DOCUMENT ME!

year - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

DOCUMENT ME!

year - Variable in class gov.nih.mipav.model.file.FileInfoJSON

yearTextField - Variable in class gov.nih.mipav.view.JPanelEditDate

DOCUMENT ME!

yellow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView

DOCUMENT ME!

yellow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

The CoolTip probe's gray color.

yellow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

DOCUMENT ME!

yellow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

The regular probe's gray color.

yellow - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

DOCUMENT ME!

yellowBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

The yellow sphere branch group that branches underneath the boneBG, and repreents the yellow sphere branch group.

yellowSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

The geometry group of the yellow sphere.

yellowSphereTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Yellow sphere transform group that set up the translation.

yEnd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

yEnd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

yEnd2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

yEnd2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

DOCUMENT ME!

YES - gov.nih.mipav.model.structures.jama.SuperLU.yes_no_t

YES - gov.nih.mipav.view.dialogs.ExitStatus

Yes button pressed

yes_no_t() - Constructor for enum gov.nih.mipav.model.structures.jama.SuperLU.yes_no_t

Yf - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream

Yf - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream

yFilterSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

yFilterSize - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

yFilterSizeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSWI

yFilterTopLeft - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

yFinish - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

values obtained when mouseReleased

yGridButtonGroup - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yGridCheckBoxList - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yGridCheckBoxPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yGridEvenSpacedButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yGridLineField - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

yGridLineLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph

DOCUMENT ME!

yGridLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

yGridScrollPane - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yGridUserPositions - Variable in class gov.nih.mipav.view.ViewJComponentGraph

yGridUserSpacedButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph

yi - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum2

yi - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

yield_blocks_signal(double[][], double[][], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

yield_diracs_signal(double[][], double[][], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

yInvert - Variable in class gov.nih.mipav.view.ViewJComponentGraph

yInvRange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

ykow_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

yl - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

yLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate label.

yLabel - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

in 4D y location of slice numbering string

yLabel - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

yLabel - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

yLabelEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate label.

YLEN - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame

YLEN - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy

yLoc - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

yLocation - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

y value of the origin.

yLocation - Variable in class gov.nih.mipav.model.file.FileInfoDicom

DICOM y coordianate of the slice location.

yLocHistory - Variable in class gov.nih.mipav.view.LineMeter

DOCUMENT ME!

yLUTa - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

DOCUMENT ME!

yLUTb - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer

DOCUMENT ME!

ylyfit - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

yMaskMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

yMaskMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

yMaskSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

yMass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

yMat - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

ymax - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox

ymax - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

yMax - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

Ymean - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex

< options for the Dytex

Ymean - Variable in class gov.nih.mipav.model.algorithms.libdt.HEMOptions

Ymean_code - Variable in enum gov.nih.mipav.model.algorithms.libdt.Ymean_type

Ymean_type(int) - Constructor for enum gov.nih.mipav.model.algorithms.libdt.Ymean_type

ymeyer_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

ymin - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox

ymin - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay

yMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

yMod - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

yMod - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

ymodel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

ymodel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2ConstrainedModelC

ymodel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

yN - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

DOCUMENT ME!

yN - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

yN - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

DOCUMENT ME!

Yn - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

YN - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

yNegClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z negative clipping slider frames.

yObjectRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation angle parameter values.

yObjectRotateText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation parameter text-field.

yOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

yOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

yOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace

yOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

yOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

yOpacity - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar opacity slider values.

yOpacitySlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z opacity slider values.

yOpacitySlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z opacity slider values.

Yopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexOptions

< covariance type for S (usually COV_DIAG).

yOrg - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

yOrg - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yOrg - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

yOrientA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

yOrientB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

yOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe

Y original coordinate value.

yOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe

Y original coordinate value.

yOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe

Y original coordinate value.

yOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe

Y original coordinate value.

yOrigin - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe

Y original coordinate value.

yosb1_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

yosb2_calcrTest - Variable in class gov.nih.mipav.model.algorithms.NL2sol

yp - Variable in class gov.nih.mipav.model.algorithms.ODE

yp - Variable in class gov.nih.mipav.model.algorithms.ODEEP

yPG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Y coord of seed point.

YPLANE - Static variable in class gov.nih.mipav.model.structures.VOIBase

Used in determining if all points on the contour have the same y-value

yPoint - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

yPointInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

yPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

DOCUMENT ME!

yPoints - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

yPointsDraw - Variable in class gov.nih.mipav.view.RubberbandLivewire

DOCUMENT ME!

yPos - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

yPos - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP

DOCUMENT ME!

yPos - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET

DOCUMENT ME!

yPosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

yPosition - Variable in class gov.nih.mipav.model.file.FileSVS

yPosition - Variable in class gov.nih.mipav.model.file.FileTiff

YPOSITION - Static variable in class gov.nih.mipav.model.file.FileSVS

YPOSITION - Static variable in class gov.nih.mipav.model.file.FileTiff

ypout - Variable in class gov.nih.mipav.model.algorithms.ODE

ypout - Variable in class gov.nih.mipav.model.algorithms.ODEEP

yPres - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

yPres - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Probe x, y, z position.

yProbe - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Probe x, y, z position.

yPts - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

yPts - Variable in class gov.nih.mipav.model.structures.VOIBase

yr - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

yRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

yRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

yRangeText - Variable in class gov.nih.mipav.view.JPanelHistogram

yRangeTextA - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextA - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextB - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextB - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextB - Variable in class gov.nih.mipav.view.ViewJPanelLUT

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextGM_A - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextGM_A - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextGM_B - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity

Y range text field in the imageA, B and GM image A, B histogram dialog.

yRangeTextGM_B - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase

Deprecated.

Y range text field in the imageA, B and GM image A, B histogram dialog.

YRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Transfer function y-ratios:

YReferenceBlack - Variable in class gov.nih.mipav.model.file.FileSVS

YReferenceBlack - Variable in class gov.nih.mipav.model.file.FileTiff

YReferenceWhite - Variable in class gov.nih.mipav.model.file.FileSVS

YReferenceWhite - Variable in class gov.nih.mipav.model.file.FileTiff

yRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image resolution in the y dimension.

yRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

resolutions

yRes - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

yRes - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Y pixel resolution.

yRes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

X and Y resolution.

yRes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The resolutions of the (possibly respampled) image (the one shown in the renderer).

yRes - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yRes - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

yresA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

yresA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

yresB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

yresB - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

yResol - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

YRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

YRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

YRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

YRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

yRotation - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

DOCUMENT ME!

yRotation - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yRotation - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

YROTATION - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

yRRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

yRSelected - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

ys - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

ys - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

ys - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

yS - Variable in class gov.nih.mipav.model.algorithms.CVODES.HermiteDataMemRec

yS - Variable in class gov.nih.mipav.model.algorithms.CVODES.PolynomialDataMemRec

yS - Variable in class gov.nih.mipav.view.Rubberband

DOCUMENT ME!

yScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

yScale - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

yScale - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

yscaleBF - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

DOCUMENT ME!

yscaleText - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D

Brute-force registration parameters:.

yScreen - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

yScreen - Static variable in class gov.nih.mipav.view.ViewJFrameImage

Height of the display screen.

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameLightBox

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Height of the display screen.

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

yScreen - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

ySd - Variable in class gov.nih.mipav.model.algorithms.CVODES.HermiteDataMemRec

ySelected - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

ySelected - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

ySep - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard

ySep - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

ySeries - Variable in class gov.nih.mipav.model.algorithms.Lmmin

ySeries - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine

DOCUMENT ME!

ySeries - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP

DOCUMENT ME!

ySeries - Variable in class gov.nih.mipav.model.algorithms.NLFittedFunction

Original y data

ysize - Variable in class gov.nih.mipav.model.algorithms.AgastDetector5_8

ysize - Variable in class gov.nih.mipav.model.algorithms.OastDetector9_16

ySize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

ySlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the XZ plane.

ySlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Which slice is currently displayed in the XZ plane.

ySlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Which slice is currently displayed in the XZ plane.

ySliceInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the XZ plane.

ySlices - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

num y slices of src image

ySlices - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

ySliderS - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

slider that controls the probe moves along the y direction.

ySource - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

ySource - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

ySource - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

ySource - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle

DOCUMENT ME!

ySource - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

ySource - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

ySpace - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea

number of pixels in y direction.

ySpace - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

ySpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

ySpaceField - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

ySpacing - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea

DOCUMENT ME!

ystar - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Halfedge

yStart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

yStart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D

yStart - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaIterator

yStart - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

yStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

yStart - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

yStart - Variable in class gov.nih.mipav.view.ViewJComponentRegistration

values obtained when mousePressed

yStdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

ysubp - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

yt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

yt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

DOCUMENT ME!

yt - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

yt - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency

yTalLabel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

yTar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

yTar - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughLine

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle

DOCUMENT ME!

yText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate text box.

yTextEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate text box.

yTick - Variable in class gov.nih.mipav.view.ViewJComponentGraph

DOCUMENT ME!

yticks - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer

yUnits - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

The units printed to the logModel, set in createNewLogile

yvBins - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

DOCUMENT ME!

yVisible - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

yVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z triplanar.

yvTable - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice

yvText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughParabola

yxBlockItem(int, int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem

yy - Variable in class gov.nih.mipav.model.algorithms.ODE

yy - Variable in class gov.nih.mipav.model.algorithms.ODEEP

yy_dinvr - Variable in class gov.nih.mipav.model.algorithms.CDFLIB

yyOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector

yyOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace

yyOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

Z

z - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

z - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

z - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

current z slice.

z - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.DynamicProblem

z - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest

z - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest

z - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

z - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform

The Hilbert tramsform and the other needed supporting routines are ported from the file transform.c written by Scott Paine of the Smithsonian Astrophysical Observatory, Submillimeter Receiver Laboratory on February 2, 2010.

z - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

z - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTDim3

z - Variable in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

z - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel

z - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel

z - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel

z - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel

z - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel

z - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Cvec

z - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop

Storage for VOI.

z - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

z - Variable in class gov.nih.mipav.model.file.CBZip2InputStream

z - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.StageLabel

z - Variable in class gov.nih.mipav.model.structures.Point3D

Z coordinate of point.

z - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar slider values.

z - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

z - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

z - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.UpdateFlags.EdgeSorter

z - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction

z - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction

z - Variable in class gov.nih.mipav.view.RubberbandLine

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.RubberbandProtractor

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

z - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

DOCUMENT ME!

z() - Method in class gov.nih.mipav.model.algorithms.LSCM.Point

Z - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.CLFFTKernelDir

Z - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

Z() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

Z() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

z_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator

z_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearSolverAndEvaluatorCreationTest

z_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurOrderingTest

z_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ThreeParameterCostFunctorTest

z_abs(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_abs1(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_add(SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

Z_AXIS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip

Flip along Z axis.

Z_AXIS - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera

Z axis constant.

Z_AXIS_180 - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the z axis 180 degrees.

Z_AXIS_MINUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the z axis -90 degrees (or 270 degrees).

Z_AXIS_PLUS - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate

Rotate about the z axis 90 degrees.

Z_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an z clip slice.

Z_CLIPSLICE_NEG - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an -z clip slice.

Z_DERIVATIVE_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory

z_div(SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_eq(SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_exp(SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom

DOCUMENT ME!

z_factor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior

DOCUMENT ME!

Z_PROJECTION - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection

Project along the Z-Axis.

z_sgn(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

Z_SLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice

This is an z slice.

z_sqrt(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z_sub(SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

z0 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

Z0 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

Z0 - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

Z02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

z1 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z1 - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions.ROI

z1 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

Z1 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

Z1 - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC

Z12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

z2 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z2 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z2 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.LaplacianMatrixFunction

z3 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z3 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z4 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z4 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z5 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z5 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z6 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z6 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z7 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z7 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

z8 - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

z8 - Variable in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid

za - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.Bessel

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.libdt

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(double, double) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

zabs(DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zabs computes the absolute value or magnitude of a DoubleDouble precision complex variable zr + j*zi.

zabs(DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

zabs computes the absolute value or magnitude of a DoubleDouble precision complex variable zr + j*zi.

zacai(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZACAI APPLIES THE ANALYTIC CONTINUATION FORMULA.

zacai(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZACAI APPLIES THE ANALYTIC CONTINUATION FORMULA.

zacon(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZACON APPLIES THE ANALYTIC CONTINUATION FORMULA.

zacon(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZACON APPLIES THE ANALYTIC CONTINUATION FORMULA.

zairy(double, double, int, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ON KODE=1, ZAIRY COMPUTES THE COMPLEX AIRY FUNCTION AI(Z) OR ITS DERIVATIVE DAI(Z)/DZ ON ID=0 OR ID=1 RESPECTIVELY.

zairy(DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ON KODE=1, ZAIRY COMPUTES THE COMPLEX AIRY FUNCTION AI(Z) OR ITS DERIVATIVE DAI(Z)/DZ ON ID=0 OR ID=1 RESPECTIVELY.

zallocateA(int, int, SuperLU.doublecomplex[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zArray - Variable in class gov.nih.mipav.model.file.FileZVI

zArray - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

zasyi(double, double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZASYI COMPUTES THE I BESSEL FUNCTION FOR REAL(Z).GE.0.0 BY MEANS OF THE ASYMPTOTIC EXPANSION FOR LARGE CABS(Z) IN THE REGION CABS(Z).GT.MAX(RL,fnu*fnu/2).

zasyi(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZASYI COMPUTES THE I BESSEL FUNCTION FOR REAL(Z).GE.0.0 BY MEANS OF THE ASYMPTOTIC EXPANSION FOR LARGE CABS(Z) IN THE REGION CABS(Z).GT.MAX(RL,fnu*fnu/2).

zAxis - Variable in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation

ZAXIS - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

Default button indices

zAxisCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets

zAxisFilter - Variable in class gov.nih.mipav.model.file.FileInfoInterfile

DOCUMENT ME!

zAxisIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

Actual button indices

zAxisOffset - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

zAxisOffset - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

zAxisRot - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

620 Z axis rotation.

zAxisStep - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

zAxisStep - Variable in class gov.nih.mipav.model.file.FileInfoAfni

DOCUMENT ME!

zaxpy(int, double[], double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

BLAS level1 routine version 3.7.0 December, 2016 Port of 12/3/93 linpack routine zaxpy Original version written by Jack Dongarra vector dy = vector dy + da * vector dx.

zaxpy_(int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZB1NRM2(int, int, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZBEG(boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zbesh(double, double, double, int, int, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbesh(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbesi(double, double, double, int, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbesi(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbesj(double, double, double, int, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbesj(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbesk(double, double, double, int, int, double[], double[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbesk(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbesy(double, double, double, int, int, double[], double[], int[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbesy(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbesyh(double, double, double, int, int, double[], double[], int[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

An older version of zbesy used by the ZQCBY quick check routine.

zbesyh(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

An older version of zbesy used by the ZQCBY quick check routine.

zbinu(double, double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

zbinu calculates the I function in the right half z plane.

zbinu(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zbinu calculates the I function in the right half z plane.

zbiry(double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zbiry(DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zbknu(double, double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

zbknu computes the k Bessel function in the right half z plane.

zbknu(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zbknu computes the k Bessel function in the right half z plane.

zblat1() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zblat2() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zblat3() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zBounds - Variable in class gov.nih.mipav.model.structures.VOI

The z - dimension bounds: zBounds [0] = min and zBounds[1] = max.

zBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop

DOCUMENT ME!

zBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam

DOCUMENT ME!

zBounds - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

DOCUMENT ME!

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices

DOCUMENT ME!

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature

z dimension bound

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase

Z cropped region bound.

zBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge

Z cropped region bound.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

xBox, yBox, zBox from the parent scene.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights

x, y, z box size.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface

xBox, yBox and zBox values from the parent frame.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

Parent frame box value.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

zBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.

zBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM

x, y, z box size.

zbuni(double, double, double, int, int, double[], double[], int[], int, int[], double) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZBUNI COMPUTES THE I BESSEL FUNCTION FOR LARGE CABS(Z).GT.

zbuni(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int, int[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZBUNI COMPUTES THE I BESSEL FUNCTION FOR LARGE CABS(Z).GT.

zbunk(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZBUNK COMPUTES THE K BESSEL FUNCTION FOR FNU.GT.FNUL.

zbunk(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZBUNK COMPUTES THE K BESSEL FUNCTION FOR FNU.GT.FNUL.

zButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

zCameraMove - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter values.

zCameraMoveText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Camera move parameter text-field.

ZCHK1(String, double, double, boolean, boolean, boolean[], int, int[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK1(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, int[], int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK2(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, int[], int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK3(String, double, double, boolean, boolean, boolean[], int, int[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[][], int[], boolean[], boolean[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK3(String, double, double, int, boolean, boolean, boolean[], int, int[], int, int[], int, int[], int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK4(String, double, double, int, boolean, boolean, boolean[], int, int[], int, SuperLU.doublecomplex[], int, int[], int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCHK6(String, double, double, int, boolean, boolean, boolean[], int, int[], int, SuperLU.doublecomplex[], int, int[], int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[][], int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zchkaa() - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

ZCHKE(int, String, int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zchkge(boolean[], int, int[], int, int[], int, int[], int, int[], double, int, double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z, arbitrary clipping slider frames.

ZCOLL - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zColor - Variable in class gov.nih.mipav.view.ViewJComponentTriImage

DOCUMENT ME!

zcolumn_bmod(int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], int[], int[], int, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zcolumn_dfs(int, int, int[], int[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zCOM - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass

z coordinate for center of mass, normalized by image resolution, if srcImage is 2D = 0

zcopy_(int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zCopy_CompCol_Matrix(SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zCopy_Dense_Matrix(int, int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zcopy_to_ucol(int, int, int[], int[], int[], SuperLU.doublecomplex[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zcos(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

zCreate_CompCol_Matrix(SuperLU.SuperMatrix, int, int, int, SuperLU.doublecomplex[], int[], int[], SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zCreate_Dense_Matrix(SuperLU.SuperMatrix, int, int, SuperLU.doublecomplex[], int, SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zCreate_SuperNode_Matrix(SuperLU.SuperMatrix, int, int, int, SuperLU.doublecomplex[], int[], int[], int[], int[], int[], SuperLU.Stype_t, SuperLU.Dtype_t, SuperLU.Mtype_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZCT - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

Int denoting ZCT sequence

zd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint

zd - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor

zD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

zD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

zD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

zD - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

zD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

used for fine movement checkbox in 3D mouse options

zd_mult(SuperLU.doublecomplex, SuperLU.doublecomplex, double) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zDataRound - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Storage location for the 1D gaussian kernels.

zdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian

DOCUMENT ME!

zdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

DOCUMENT ME!

zdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian

DOCUMENT ME!

zdim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image size in the z dimension.

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET

Length of the z dimension in pixels.

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

dimensions and length

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting

zDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint

extent of z dimension in the in the source image.

zDim - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

zDim of 4d image

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation

The image's z dimension.

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion

image dimensions.

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion

Image dimensions.

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI

Z dimension length

zDim - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileAvi

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileBFLOAT

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileBioRad

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileCheshireVOI

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileLSM

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler

the Z dimension of the image

zDim - Variable in class gov.nih.mipav.model.file.FileZVI

zDim - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Number of pixels in z dimension.

zDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid

zDim - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Image X, Y, Z dimension.

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z and time dimension values.

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask

ModelImage image array dimensions:

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

Dimensions of image A.

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView

Dimensions of image A.

zDim - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Dimensions of image A.

zDim - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z and time dimension values.

zDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

image x, y, z dimensions in FileCoordinates

zDim - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

zDim - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

Note that xDim and yDim refer to destImage, while zDim and tDim refer to imageA.

zDim - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

zDim - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

Zdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

Z dimension of the image.

Zdim - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

Z dimension of the image.

zdimA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

zdimA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Dimensions of match image and base image.

zDimA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

zdimB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

zdimM - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

zDimText - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.JacobianElliptic

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

complex divide c = a/b.

zdiv(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

complex divide c = a/b.

zdiv(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

complex divide c = a/b.

zdiv(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

complex divide c = a/b.

zdotc(int, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

BLAS level1 routine version 3.7.0 December, 2016 Port of 12/3/93 linpack zdotc routine Original version created by Jack Dongarra Forms the dot product of two complex vectors x**H * Y.

zdotc_(SuperLU.doublecomplex, int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zdotu(int, double[][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a a port of BLAS level1 routine ZDOTU version 3.7.0.

ZDPARF(int, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zdrive(String, RandomAccessFile, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zdrscl(int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version auxiliary routine 3.7.0 December, 2016 ZDRSCL.

zdrvge(boolean[], int, int[], int, double, int, double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[][][], double[], double[][][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

ZDSC(double[], int, int, int, int, double, double[], double[][], double[][], double[][], double[][], double[], double[], double[], double[], int, double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC

zdscal(int, double, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the BLAS level1 routine ZDSCAL version 3.7.0 December, 2016.

zEnd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

zEnd - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep

zEnd2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

DOCUMENT ME!

zenith - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI

zenithArray - Variable in class gov.nih.mipav.model.file.FileNIFTI

zero - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

zero - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting

zero - Variable in class gov.nih.mipav.model.algorithms.sproot

zero() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3

Zero() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3

ZERO - Static variable in class gov.nih.mipav.model.algorithms.CVODES

ZERO - Static variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite

ZERO - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector2f

Special vectors.

ZERO - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjVector3f

Special vectors.

ZERO_CROSSING_EDGE_DETECTOR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel

ZERO_CROSSING_EDGE_DETECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

zero_Mat_rm(SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

ZERO_STATE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState

Default, unused state.

ZERO_TRESH - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection

ZERO_YMEAN - gov.nih.mipav.model.algorithms.libdt.Ymean_type

zeroAround() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

If a cropping operation was performed, shift the data back to the center and put zeros around the edges.

zeroAround(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

If a cropping operation was performed, shift the data back to the center and put zeros around the edges.

zeroButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator

DOCUMENT ME!

zeroByteArray(byte[]) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util

Fills a byte array with some zeros.

zeroCell - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X

50 Cell number at theta.

zeroCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice

Checkbox to zero funused fields at 112, 116, and 120.

zeroCrossingEdgeDetector() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel

zeroDetectionType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

The type of zero crossing detection to use.

zeroDetectionType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep

The type of zero crossing detection to use.

zeroDetectionType - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression

The type of zero crossing detection to use.

zeroDetector - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel

zeroFillFactorRead - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER

zerofinder(Vector<Double>, Vector<Double>, double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

zerofunused - Variable in class gov.nih.mipav.model.file.FileAnalyze

If true, zero funused fields

zerofunused() - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice

zeroLengthFlag - Variable in class gov.nih.mipav.model.file.FileRaw

flag that indicates if raFile should first be set to length of 0

ZeroMeanUnitLength(CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil

Normalises a vector to zero mean and unit length.

zeroMoment0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

zeroMoment1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction

DOCUMENT ME!

zeroPad - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT

True if zero padding actually performed.

zeroPad - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2

True if zero padding actually performed.

zeroPad - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter

DOCUMENT ME!

zeroPad - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor

DOCUMENT ME!

zeroPad - Variable in class gov.nih.mipav.model.file.FileAfni

DOCUMENT ME!

zeroToOneLUTAdj - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

flag indicating whether there is 0 to 1 LUT Adjustment *

zeroToOneLUTAdjust() - Method in class gov.nih.mipav.model.structures.ModelLUT

The purpose of this method is to adjust the zero index of the LUT from (0, 0, 0) to (1, 1, 1) The reason is so image A and image B are blended throughout by default.

zeroXMin - Variable in class gov.nih.mipav.view.ViewJComponentGraph

zeroYMin - Variable in class gov.nih.mipav.view.ViewJComponentGraph

zeta(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes

ZETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes

zetac(double) - Method in class gov.nih.mipav.model.algorithms.Cephes

ZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes

zexp(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

complex exponential function b = exp(a).

zexp(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

complex exponential function b = exp(a).

zexp(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

complex exponential function b = exp(a).

zexp(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

complex exponential function b = exp(a).

zexp(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

complex exponential function b = exp(a).

zexp(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

complex exponential function b = exp(a).

zexpand(int[], SuperLU.MemType, int, int, SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zfactor - Variable in class gov.nih.mipav.model.algorithms.HornSchunk

zfactor - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow

zfactor - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow

zfactor - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

zfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk

zfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow

zfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow

zfactor - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW

zfgmr(int, SuperLU.SuperMatrix, SuperLU.doublecomplex[], SuperLU.doublecomplex[], double, int, int[], RandomAccessFile) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zfill(SuperLU.doublecomplex[], int, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zfill_diag(int, SuperLU.NCformat) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zFillRHS(SuperLU.trans_t, int, SuperLU.doublecomplex[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zFormFullA(int, int[], SuperLU.doublecomplex[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgecon(char, int, double[][][], int, double, double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgeequ(int, int, double[][][], int, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgemm(char, char, int, int, int, double[], double[][][], int, double[][][], int, double[], double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 2/8/89 Blas routine Original version written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.

ZGEMM(char, char, int, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgemv(char, int, int, double[], double[][][], int, double[][], int, double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

From LAPACK 3.7.0 December 2106 Routine ported from 10/22/86 blas zgemv subroutine Original version written by: Jack Dongarra, Argonne National Lab.

zgemv_(char, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zGenXtrue(int, int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgerc(int, int, double[], double[][], int, double[][], int, double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 10/22/86 Blas routine ZGERC Original version written by: Jack Dongarra, Argonne National Lab.

zgerc_(int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgerfs(char, int, int, double[][][], int, double[][][], int, int[], double[][][], int, double[][][], int, double[], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgesv(int, int, double[][][], int, int[], double[][][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgesvx(char, char, int, int, double[][][], int, double[][][], int, int[], char[], double[], double[], double[][][], int, double[][][], int, double[], double[], double[], double[][], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zget01(int, int, double[][][], int, double[][][], int, int[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zget02(char, int, int, int, double[][][], int, double[][][], int, double[][][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK test routine ZGET02.

zget03(int, double[][][], int, double[][][], int, double[][][], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zget04(int, int, double[][][], int, double[][][], int, double, double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version test routine 3.7.0 ZGET04.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December 2016.

zget07(char, int, int, double[][][], int, double[][][], int, double[][][], int, double[][][], int, double[], boolean, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgetrf(int, int, double[][][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgetrf2(int, int, double[][][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgetri(int, double[][][], int, int[], double[][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgetrs(char, int, int, double[][][], int, int[], double[][][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zgscon(char, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double, double[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgsequ(SuperLU.SuperMatrix, double[], double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgsisx(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], int[], char[], double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], SuperLU.GlobalLU_t, SuperLU.mem_usage_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgsitrf(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int, int, int[], SuperLU.doublecomplex[], int, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgsrfs(SuperLU.trans_t, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], char, double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgssv(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgssvx(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int[], int[], int[], char[], double[], double[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, double[], double[], double[], double[], SuperLU.GlobalLU_t, SuperLU.mem_usage_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgst01(int, int, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgst02(SuperLU.trans_t, int, int, int, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgst04(int, int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, double, double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgst07(SuperLU.trans_t, int, int, SuperLU.SuperMatrix, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgstrf(SuperLU.superlu_options_t, SuperLU.SuperMatrix, int, int, int[], SuperLU.doublecomplex[], int, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zgstrs(SuperLU.trans_t, SuperLU.SuperMatrix, SuperLU.SuperMatrix, int[], int[], SuperLU.SuperMatrix, SuperLU.SuperLUStat_t, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZHANG_SOURCE - Static variable in class gov.nih.mipav.model.algorithms.EllipticIntegral

Real arguments for first and second complete and incomplete elliptic integrals.

zhemv(char, int, double[], double[][][], int, double[][], int, double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 BLAS level2 routine ZHEMV proivded by Univ. of Tennessee, Univ. of California Berkeley, University of Colorado Denver and NAG Ltd., December, 2016 Originally written 22-October-1986 by Jack Dongarra, Argonne National Lab, Jeremy Du Croz, Nag Central Office, Sven Hammarling, Nag Central Office, and Richard Hanson, Sandia National Labs.

zhemv_(char, int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zher2(char, int, double[], double[][], int, double[][], int, double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 BLAS level2 routine ZHER2 proivded by Univ. of Tennessee, Univ. of California Berkeley, University of Colorado Denver and NAG Ltd., December, 2016 Originally written 22-October-1986 by Jack Dongarra, Argonne National Lab, Jeremy Du Croz, Nag Central Office, Sven Hammarling, Nag Central Office, and Richard Hanson, Sandia National Labs.

zher2_(char, int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zi - Variable in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zi - Variable in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zi - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetExtremum3

ZigZagTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants

ZigZagTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants

zimag - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter

zImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage

DOCUMENT ME!

zImageSlider - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

zin - Variable in class gov.nih.mipav.model.file.FileNIFTI

zinf_norm_error(int, SuperLU.SuperMatrix, SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zInit - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression

zInvertCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM

Invert movement checkbox

zInvRange - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

Zip - gov.nih.mipav.model.file.MetadataExtractor.FileType

zipFileName - Variable in class gov.nih.mipav.model.file.NDARWriteData

zitersol() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zitersol1() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zkscl(double, double, double, int, double[], double[], int[], double, double, double) - Method in class gov.nih.mipav.model.algorithms.Bessel

Set K functions to zero on underflow, continue recurrence on scaled functions until two members come on scale, then return with min(zn[0]+2,n) values scaled by 1/tol.

zkscl(DoubleDouble, DoubleDouble, DoubleDouble, int, DoubleDouble[], DoubleDouble[], int[], DoubleDouble, DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

Set K functions to zero on underflow, continue recurrence on scaled functions until two members come on scale, then return with min(zn[0]+2,n) values scaled by 1/tol.

zLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate label.

zLabelEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate label.

zlacgv_slu(int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlacn2(int, double[][], double[][], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version auxiliary routine 3.7.0 ZLACN2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December 2016.

zlacon2_(int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], double[], int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlacpy(char, int, int, double[][][], int, double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version 3.7.0 auxiliary routine DLACPY.

zlagge(int, int, int, int, double[], double[][][], int, int[], double[][], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary test routine ZLAGGE Original ZLAGGE created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., December, 2016 zlagge generates a complex general m by n matrix A, by pre- and post- multiplying a real diagonal matrix D with random unitary matrices: A = U*D*V.

zlagge_slu(int, int, int, int, double[], SuperLU.doublecomplex[], int, int[], SuperLU.doublecomplex[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlaghe(int, int, double[], double[][][], int, int[], double[][], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK auxiliary routine ZLAGHE version 3.7.0.

zlaghe_slu(int, int, double[], SuperLU.doublecomplex[], int, int[], SuperLU.doublecomplex[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlagsy(int, int, double[], double[][][], int, int[], double[][], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary test routine zlagsy Original ZLAGSY created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., December, 2016 zlagsy generates a complex symmetric matrix A, by pre- and post- multiplying a real diagonal matrix D with a random unitary matrix: A = U*D*U**T.

zlagsy_slu(int, int, double[], SuperLU.doublecomplex[], int, int[], SuperLU.doublecomplex[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlange(char, int, int, double[][][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the version 3.7.0 LAPACK auxiliary routine ZLANGE Original ZLANGE created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., December, 2016 zlange returns the value of the one norm, or the Frobenius norm, or the infinity norm, or the largest absolute value of any element of a complex rectangular matrix.

zlangs(char, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlantr(char, char, char, int, int, double[][][], int, double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zlaqge(int, int, double[][][], int, double[], double[], double, double, double, char[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zlaqgs(SuperLU.SuperMatrix, double[], double[], double, double, double, char[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlarnd(int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the LAPACK routine ZLARND.f version 3.7.0 LAPACK is a software package provided by University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December, 2016 zlarnd returns a random complex number from a uniform or normal distribution.

zlarnd_slu(SuperLU.doublecomplex, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlarnv(int, int[], int, double[][]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary routine ZLARNV Original ZLARNV created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., December, 2016 zlarnv returns a vector of n random complex numbers from a uniform or normal distribution

zlarnv_slu(int, int[], int, SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlarot(boolean, boolean, boolean, int, double[], double[], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary test routine ZLAROT Original ZLAROT created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., December, 2016 zlarot applies a (Givens) rotation to two adjacent rows or columns, where one element of the first and/or last collumn/row for use on matrices stored in some format other than GE, so that elements of the matrix may be used or modified for which no array element is provided.

zlarot_slu(boolean, boolean, boolean, int, SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlartg(double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary routine ZLARTG Original ZLARTG created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., December, 2016 zlartg generates a plane rotation with real cosine and complex sine.

zlartg_slu(SuperLU.doublecomplex, SuperLU.doublecomplex, double[], SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlaset(char, int, int, double[], double[], double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 auxiliary routine ZLASET.

zlaset_slu(char, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlassq(int, double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK auxiliary routine ZLASSQ Original ZLASSQ created by Univ. of Tennessee, Univ. of California Berkeley, Univ. of Colorado Denver, and NAG Ltd., December, 2016 zlassq returns the values scl and smsq such that (scl**2)*smsq = x[0]**2 + x[incx]**2 + ... + x[(n-1)*incx]**2 + (scale**2)*sumsq The value of sumsq is assumed to be non-negative and scl returns the value scl = max(scale,abs(real(x[i])),abs(imag(x[i))). scale and sumsq refer to the original supplied values in scale[] and sumsq[]. scl and smsq are the returned values in scale[] and sumsq[] that overwrite the orginal values.

zLastSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

zLastSlice2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

zlaswp(int, double[][][], int, int, int, int[], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

zlatb4(String, int, int, int, char[], int[], int[], double[], int[], double[], char[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK test routine DLATB4.

zlatb4_slu(String, int, int, int, char[], int[], int[], double[], int[], double[], char[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlatms(int, int, char, int[], char, double[], int, double, double, int, int, char, double[][][], int, double[][], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of version 3.7.0 LAPACK test routine ZLATMS Original ZLATMS created by Univ. of Tennessee, Univ. of California Berkeley, and NAG Ltd., December, 2016 zlatms generates random matrices with specified singular values (or hermitian with specified eigenvalues) for testing LAPACK programs.

zlatms_slu(int, int, char, int[], char, double[], int, double, double, int, int, char, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlatrs(char, char, char, char, int, double[][][], int, double[][], double[], double[], int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version auxiliary routine 3.7.0 ZLATRS.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December 2016.

zlibCompression - Variable in class gov.nih.mipav.model.file.FileSVS

TIFF files.

zlibCompression - Variable in class gov.nih.mipav.model.file.FileTiff

TIFF files.

zlibDecompresser - Variable in class gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB

zlibDecompresser - Variable in class gov.nih.mipav.model.file.FileMATLAB

zlibDecompresser - Variable in class gov.nih.mipav.model.file.FileMetaImage

zlibDecompresser - Variable in class gov.nih.mipav.model.file.FileSVS

zlibDecompresser - Variable in class gov.nih.mipav.model.file.FileTiff

zlinsol() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlinsol1() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlinsolx(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlinsolx1(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlinsolx2(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zlinsolx3(int, double, SuperLU.yes_no_t, SuperLU.trans_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zLocation - Variable in class gov.nih.mipav.model.file.FileInfoDicom

DICOM z coordianate of the slice location.

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

complex logarithm b = clog(a).

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

complex logarithm b = clog(a).

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

complex logarithm b = clog(a).

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

complex logarithm b = clog(a).

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

complex logarithm b = clog(a).

zlog(double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

complex logarithm b = clog(a).

zlog(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

complex logarithm b = clog(a).

zlsolve(int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zLUMemInit(SuperLU.fact_t, SuperLU.doublecomplex[], int, int, int, int, int, double, SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.GlobalLU_t, int[][], SuperLU.doublecomplex[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zLUMemXpand(int, int, SuperLU.MemType, int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zLUWorkFree(int[], SuperLU.doublecomplex[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zLUWorkInit(int, int, int, int[][], SuperLU.doublecomplex[][], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZMAKE(String, char, char, int, int, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[], int, int, int, boolean[], SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zMaskMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

zMaskMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer

DOCUMENT ME!

zMaskSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

zMass - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats

zmatvec(int, int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zmemory_usage(int, int, int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

zmlri(double, double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

zmlri computes the I Bessel function for the Real(z) >= 0.0 by the Miller Algorithm normalized by a Neumann series.

zmlri(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zmlri computes the I Bessel function for the Real(z) >= 0.0 by the Miller Algorithm normalized by a Neumann series.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

complex multiply c = a * b.

zmlt(double, double, double, double, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

complex multiply c = a * b.

zmlt(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

complex multiply c = a * b.

zmlt(DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

complex multiply c = a * b.

ZMMCH(char, char, int, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[][], int, double, double[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZMVCH(char, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], double[], SuperLU.doublecomplex[], double, double[], boolean[], boolean) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zN - Variable in class gov.nih.mipav.view.dialogs.JDialogRecordLUT

DOCUMENT ME!

zN - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase

DOCUMENT ME!

zN - Variable in class gov.nih.mipav.view.ViewJComponentLUTTable

DOCUMENT ME!

ZN - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection

zNegClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z negative clipping slider frames.

zObjectRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation angle parameter values.

zObjectRotateText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM

Object rotation parameter text-field.

zOffset - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

ZOLTAN - gov.nih.mipav.model.structures.jama.SuperLU.colperm_t

zoom - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

zoom - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

current zoom for result image *

zoom - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

current zoom for result image *

zoom - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameImage

Defaults magnification of image to 1.

zoom - Variable in class gov.nih.mipav.view.ViewJFramePaintVasculature

Defaults magnification of image to 1.

zoom - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool

DOCUMENT ME!

zoom - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

Magnification for image.

zoom() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM

zoom() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate

ZOOM - Static variable in interface gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehaviorCallback

DOCUMENT ME!

zoom_in(double[], double[], int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW

Function to upsample the image

zoom_out(double[], double[], int, int, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW

Downsample an image

ZOOM_SIGMA_ZERO - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW

zoom_size(int, int, int[], int[], double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW

Compute the size of a zoomed image from the zoom factor

zoomDialog - Variable in class gov.nih.mipav.view.ViewJFrameImage

Reference to the magnification tool.

zoomerLabel - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

zoomerSlider - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame

zoomFactor - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom

zoomInFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

this method will zoom in a particular frame.

zoomInFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

this method will zoom in a particular frame.

zoomInFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

this method will zoom in a particular frame.

ZOOMING_IN - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Indicates the cursor is in zoom in mode

ZOOMING_OUT - Static variable in class gov.nih.mipav.view.ViewJComponentBase

Indicates the cursor is in zoom out mode

zoomMode - Variable in class gov.nih.mipav.view.ViewJFrameBase

DOCUMENT ME!

ZoomMode() - Constructor for enum gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode

zoomOne() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

sets image zoom to 1

zoomOne() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

sets image zoom to 1

zoomOneButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

buttons *

zoomOneButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

buttons *

zoomOutFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

this method will zoom out a particular frame.

zoomOutFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer

this method will zoom out a particular frame.

zoomOutFrame(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage

this method will zoom out a particular frame.

ZoomPhase(CeresSolver.FunctionSample, CeresSolver.FunctionSample, CeresSolver.FunctionSample, CeresSolver.FunctionSample, CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch

zoomX - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

zoomX - Variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

zoomX - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

zoomX - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

zoomY - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

zoomY - Variable in class gov.nih.mipav.view.ViewJComponentBase

DOCUMENT ME!

zoomY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM

DOCUMENT ME!

zoomY - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression

DOCUMENT ME!

zOp - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

zOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature

zOp - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

zOpacity - Variable in class gov.nih.mipav.view.renderer.SceneState

x, y, z triplanar opacity slider values.

zOpacitySlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

x, y, z opacity slider values.

zOpacitySlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

x, y, z opacity slider values.

zOrientA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

zOrientB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos

DOCUMENT ME!

zpanel_bmod(int, int, int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], int[], int[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zpanel_dfs(int, int, int, SuperLU.SuperMatrix, int[], int[], SuperLU.doublecomplex[], int[], int[], int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zPG - Variable in class gov.nih.mipav.view.ViewJComponentEditImage

Z coord of seed point.

zPivotGrowth(int, SuperLU.SuperMatrix, int[], SuperLU.SuperMatrix, SuperLU.SuperMatrix) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zpivotL(int, double, boolean[], int[], int[], int[], int[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zPixelIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization

Handle case where zDim is far less than xDim and yDim

ZPLANE - Static variable in class gov.nih.mipav.model.structures.VOIBase

Used in determining if all points on the contour have the same z-value

zPoint - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

zPointInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam

zPoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength

DOCUMENT ME!

zPos - Variable in class gov.nih.mipav.model.file.FileICS

DOCUMENT ME!

zPosition - Variable in class gov.nih.mipav.model.file.FileInfoLIFF

zpow(double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

b = z**a = exp(a*log(z))

zpow(double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform

b = z**a = exp(a*log(z))

zpow(double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

b = z**a = exp(a*log(z))

ZPPQF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

ZPPQG - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zprint_lu_col(String, int, int, int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zprint_soln(int, int, SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zProbe - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Probe x, y, z position.

zProbe - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Probe x, y, z position.

zpruneL(int, int[], int, int, int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zptr - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream

zPts - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

zPts - Variable in class gov.nih.mipav.model.structures.VOIBase

zqcai(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcai(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zqcbh(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcbh(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zqcbi(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcbi(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zqcbj(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcbj(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zqcbk(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcbk(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

zqcby(int) - Method in class gov.nih.mipav.model.algorithms.Bessel

DOCUMENT ME!

zqcby(int) - Method in class gov.nih.mipav.model.algorithms.BesselEP

DOCUMENT ME!

ZQUCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zQuerySpace(SuperLU.SuperMatrix, SuperLU.SuperMatrix, SuperLU.mem_usage_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zr - Variable in class gov.nih.mipav.model.algorithms.Bessel

zr and zi are the real and imaginary parts of the complex argument.

zr - Variable in class gov.nih.mipav.model.algorithms.BesselEP

zr and zi are the real and imaginary parts of the complex argument.

zr - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

zRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

DOCUMENT ME!

zRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D

DOCUMENT ME!

zrati(double, double, double, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZRATI COMPUTES RATIOS OF I BESSEL FUNCTIONS BY BACKWARD RECURRENCE.

zrati(DoubleDouble, DoubleDouble, DoubleDouble, int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZRATI COMPUTES RATIOS OF I BESSEL FUNCTIONS BY BACKWARD RECURRENCE.

zreadhb(RandomAccessFile, int[], int[], int[], SuperLU.doublecomplex[][], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zReadValues(RandomAccessFile, int, SuperLU.doublecomplex[], int, int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor

The image resolution in the z dimension.

zRes - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold

resolutions

zRes - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation

The image's z resolution.

zRes - Variable in class gov.nih.mipav.model.file.FileCheshire

DOCUMENT ME!

zRes - Variable in class gov.nih.mipav.model.file.FileSTK

DOCUMENT ME!

zRes - Variable in class gov.nih.mipav.model.file.FileSVS

DOCUMENT ME!

zRes - Variable in class gov.nih.mipav.model.file.FileTiff

DOCUMENT ME!

zRes - Variable in class gov.nih.mipav.model.structures.ModelSimpleImage

Z voxel resolution.

zRes - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

The resolutions of the (possibly respampled) image (the one shown in the renderer).

zresA - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile

parameter for AlgorithmTransform

zresA - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

zresB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer

DOCUMENT ME!

zresB - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

Resolutions of match image and base image.

zResol - Variable in class gov.nih.mipav.model.file.FileInterfile

DOCUMENT ME!

ZRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileLSM

EchoTech Tiff TAGS.

ZRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSTK

EchoTech Tiff TAGS.

ZRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileSVS

EchoTech Tiff TAGS.

ZRESOLUTION - Static variable in class gov.nih.mipav.model.file.FileTiff

EchoTech Tiff TAGS.

ZROTATION - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController

zRRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

DOCUMENT ME!

zs - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel

zs - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image

zs - Variable in class gov.nih.mipav.model.file.FileMGH

DOCUMENT ME!

zs - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

zs1s2(double, double, double[], double[], double[], double[], int[], double, int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZS1S2 TESTS FOR A POSSIBLE UNDERFLOW RESULTING FROM THE ADDITION OF THE I AND K FUNCTIONS IN THE ANALYTIC CON- TINUATION FORMULA WHERE S1=K FUNCTION AND S2=I FUNCTION.

zs1s2(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], int[], DoubleDouble, int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZS1S2 TESTS FOR A POSSIBLE UNDERFLOW RESULTING FROM THE ADDITION OF THE I AND K FUNCTIONS IN THE ANALYTIC CON- TINUATION FORMULA WHERE S1=K FUNCTION AND S2=I FUNCTION.

zscal(int, double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

Routine ported from 12/3/93 linpack dscal Original version written by Jack Dongarra Scales a vector by a constant zscal scales a vector by a constant.

zscal_(int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zscore - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture

If true, produce zscore output.

zscore - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

If true, produce z score = (value - mean)/(standard deviation) output of Haralick features

zscoreCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture

zseri(double, double, double, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZSERI COMPUTES THE I BESSEL FUNCTION FOR REAL(Z).GE.0.0 BY MEANS OF THE POWER SERIES FOR LARGE CABS(Z) IN THE REGION CABS(Z).LE.2*SQRT(fnu+1).

zseri(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZSERI COMPUTES THE I BESSEL FUNCTION FOR REAL(Z).GE.0.0 BY MEANS OF THE POWER SERIES FOR LARGE CABS(Z) IN THE REGION CABS(Z).LE.2*SQRT(fnu+1).

zSetRWork(int, int, SuperLU.doublecomplex[][], SuperLU.doublecomplex[][], SuperLU.doublecomplex[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zSetupSpace(SuperLU.doublecomplex[], int, SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zshch(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

zshch computes the complex hyperbolic functions csh = sinh(x+i*y) and cch = cosh(x+i*y).

zshch(double, double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

zshch computes the complex hyperbolic functions csh = sinh(x+i*y) and cch = cosh(x+i*y).

zshch(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zshch computes the complex hyperbolic functions csh = sinh(x+i*y) and cch = cosh(x+i*y).

zShow - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

zShow - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

zsin(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle

zsin(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral

DOCUMENT ME!

zSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

zSlice - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

current z slice *

zSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the XY plane.

zSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices

Which slice is currently displayed in the XY plane.

zSlice - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

Z slice, which image of 1-100 are we showing.

zSlice - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer

Which slice is currently displayed in the XY plane.

zSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

current z slice *

zSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM

Which slice is currently displayed in the XY plane.

zSlice - Variable in class gov.nih.mipav.view.ViewJFrameAnimate

DOCUMENT ME!

zSlice - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip

DOCUMENT ME!

zSlice - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

ZSlice(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeHistogramEffect

zSlice2 - Variable in class gov.nih.mipav.view.ViewJFrameRegistration

DOCUMENT ME!

zSliceInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip

Which slice is currently displayed in the XY plane.

zSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB

num z slices for src image

zSlices - Variable in class gov.nih.mipav.view.dialogs.JDialogSubset

DOCUMENT ME!

zSliderS - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

slider that controls the probe moves along the z direction.

ZSNCA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

zsnode_bmod(int, int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[], SuperLU.GlobalLU_t, SuperLU.SuperLUStat_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zsnode_dfs(int, int, int[], int[], int[], int[], int[], SuperLU.GlobalLU_t) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zSource - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

zSpace - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

zSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

zsqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModel2

complex square root b = csqrt(a).

zsqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullModelqd

complex square root b = csqrt(a).

zsqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

complex square root b = csqrt(a).

zsqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Hypergeometric

complex square root b = csqrt(a).

zsqrt(double, double, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.InverseLaplaceTest

complex square root b = csqrt(a).

zsqrt(DoubleDouble, DoubleDouble, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

complex square root b = csqrt(a).

zStart - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions

zStart - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

for Projection.

zStart - Variable in class gov.nih.mipav.model.file.FileWriteOptions

DOCUMENT ME!

zStart - Variable in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing

DOCUMENT ME!

zStart - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMinc

DOCUMENT ME!

zStdDev - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction

DOCUMENT ME!

zStop - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions

zString - Variable in class gov.nih.mipav.view.ViewJComponentAnimate

string for displaying slice number

zString - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip

DOCUMENT ME!

zswap_(int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zsymv(char, int, double[], double[][][], int, double[][], int, double[], double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

LAPACK auxiliary routine version 3.7.0 December, 2016 This is a port of the 10/22/86 Blas routine ZSYMV Original code written by: Jack Dongarra, Argonne Nationa Lab.

zsymv_(char, int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zTalLabel - Variable in class gov.nih.mipav.view.ViewJFrameTriImage

zTar - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline

DOCUMENT ME!

zTar - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline

DOCUMENT ME!

ZTC - Variable in class gov.nih.mipav.view.ViewOpenImageSequence

Int denoting ZTC sequence

ztest_csh() - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

burning point X, Y, Z coordinate text box.

zTextEntry - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

entry point X, Y, Z coordinate text box.

ZTOB1(double[], double, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

ztrmm(char, char, char, char, int, int, double[], double[][][], int, double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 2/8/89 Blas level 3 routine ZTRMM Original code written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.

ztrmv(char, char, char, int, double[][][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 10/22/86 blas routine ZTRMV Original version written by: Jack Dongarra, Argonne National Lab.

ztrsm(char, char, char, char, int, int, double[], double[][][], int, double[][][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 2/8/89 Blas routine ZTRSM Original code written by: Jack Dongarra, Argonne National Laboratory Iain Duff, AERE Harwell.

ZTRSM(char, char, char, char, int, int, SuperLU.doublecomplex, SuperLU.doublecomplex[][], int, SuperLU.doublecomplex[][], int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ztrsv(char, char, char, int, double[][][], int, double[][], int) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of the 10/22/86 Blas routine ZTRSV Original version written by: Jack Dongarra, Argonne National Lab.

ztrsv_(char, char, char, int, SuperLU.doublecomplex[], int, SuperLU.doublecomplex[], int) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ztrti2(char, char, int, double[][][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version routine 3.7.0 ZTRTI2.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December 2016.

ztrtri(char, char, int, double[][][], int, int[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations

This is a port of LAPACK version routine 3.7.0 ZTRTRI.F created by the University of Tennessee, University of California Berkeley, University of Colorado Denver, and NAG Ltd., December 2016.

zTXt - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

zuchk(double, double, int[], double) - Method in class gov.nih.mipav.model.algorithms.Bessel

Y ENTERS AS A SCALED QUANTITY WHOSE MAGNITUDE IS GREATER THAN EXP(-ALIM)=ASCLE=1.0E+3*D1MACH(1)/TOL.

zuchk(DoubleDouble, DoubleDouble, int[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

Y ENTERS AS A SCALED QUANTITY WHOSE MAGNITUDE IS GREATER THAN EXP(-ALIM)=ASCLE=1.0E+3*D1MACH(1)/TOL.

zunhj(double, double, double, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

REFERENCES HANDBOOK OF MATHEMATICAL FUNCTIONS BY M.

zunhj(DoubleDouble, DoubleDouble, DoubleDouble, int, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

REFERENCES HANDBOOK OF MATHEMATICAL FUNCTIONS BY M.

zuni1(double, double, double, int, int, double[], double[], int[], int[], double) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUNI1 COMPUTES I(FNU,Z) BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSION FOR I(FNU,Z) IN -PI/3.LE.ARG Z.LE.PI/3.

zuni1(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUNI1 COMPUTES I(FNU,Z) BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSION FOR I(FNU,Z) IN -PI/3.LE.ARG Z.LE.PI/3.

zuni2(double, double, double, int, int, double[], double[], int[], int[], double) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUNI2 COMPUTES I(FNU,Z) IN THE RIGHT HALF PLANE BY MEANS OF UNIFORM ASYMPTOTIC EXPANSION FOR J(FNU,ZN) WHERE ZN IS Z*I OR -Z*I AND ZN IS IN THE RIGHT HALF PLANE ALSO.

zuni2(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], int[], DoubleDouble) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUNI2 COMPUTES I(FNU,Z) IN THE RIGHT HALF PLANE BY MEANS OF UNIFORM ASYMPTOTIC EXPANSION FOR J(FNU,ZN) WHERE ZN IS Z*I OR -Z*I AND ZN IS IN THE RIGHT HALF PLANE ALSO.

zunik(double, double, double, int, int, int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUNIK COMPUTES PARAMETERS FOR THE UNIFORM ASYMPTOTIC EXPANSIONS OF THE I AND K FUNCTIONS ON IKFLG= 1 OR 2 RESPECTIVELY BY.

zunik(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUNIK COMPUTES PARAMETERS FOR THE UNIFORM ASYMPTOTIC EXPANSIONS OF THE I AND K FUNCTIONS ON IKFLG= 1 OR 2 RESPECTIVELY BY.

zUnits - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics

The units printed to the logModel, set in createNewLogile

zunk1(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUNK1 COMPUTES K(FNU,Z) AND ITS ANALYTIC CONTINUATION FROM THE RIGHT HALF PLANE TO THE LEFT HALF PLANE BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSION.

zunk1(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUNK1 COMPUTES K(FNU,Z) AND ITS ANALYTIC CONTINUATION FROM THE RIGHT HALF PLANE TO THE LEFT HALF PLANE BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSION.

zunk2(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUNK2 COMPUTES K(FNU,Z) AND ITS ANALYTIC CONTINUATION FROM THE RIGHT HALF PLANE TO THE LEFT HALF PLANE BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSIONS FOR H(KIND,FNU,ZN) AND J(FNU,ZN) WHERE ZN IS IN THE RIGHT HALF PLANE, KIND=(3-MR)/2, MR=+1 OR -1.

zunk2(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUNK2 COMPUTES K(FNU,Z) AND ITS ANALYTIC CONTINUATION FROM THE RIGHT HALF PLANE TO THE LEFT HALF PLANE BY MEANS OF THE UNIFORM ASYMPTOTIC EXPANSIONS FOR H(KIND,FNU,ZN) AND J(FNU,ZN) WHERE ZN IS IN THE RIGHT HALF PLANE, KIND=(3-MR)/2, MR=+1 OR -1.

zuoik(double, double, double, int, int, int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

ZUOIK COMPUTES THE LEADING TERMS OF THE UNIFORM ASYMPTOTIC EXPANSIONS FOR THE I AND K FUNCTIONS AND COMPARES THEM (IN LOGARITHMIC FORM) TO ALIM AND ELIM FOR OVER AND UNDERFLOW WHERE ALIM.LT.ELIM.

zuoik(DoubleDouble, DoubleDouble, DoubleDouble, int, int, int, DoubleDouble[], DoubleDouble[], int[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

ZUOIK COMPUTES THE LEADING TERMS OF THE UNIFORM ASYMPTOTIC EXPANSIONS FOR THE I AND K FUNCTIONS AND COMPARES THEM (IN LOGARITHMIC FORM) TO ALIM AND ELIM FOR OVER AND UNDERFLOW WHERE ALIM.LT.ELIM.

zusolve(int, int, SuperLU.doublecomplex[], SuperLU.doublecomplex[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zVector - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

ZVI - Static variable in class gov.nih.mipav.model.file.FileUtility

Zeiss ZVI has extension .zvi

zVisible - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SceneStatePlotter

DOCUMENT ME!

zVisible - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer.SceneState

DOCUMENT ME!

zVisible - Variable in class gov.nih.mipav.view.renderer.SceneState

Boolean visibility values for x, y, z triplanar.

zviToMipavMeasurementUnits(int) - Method in class gov.nih.mipav.model.file.FileZVI

zwrsk(double, double, double, int, int, double[], double[], int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Bessel

zwrsk computes the I Bessel function for Real(z) >- 0.0 by normalizing the I function ratios from zrati by the Wronskian.

zwrsk(DoubleDouble, DoubleDouble, DoubleDouble, int, int, DoubleDouble[], DoubleDouble[], int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.BesselEP

zwrsk computes the I Bessel function for Real(z) >- 0.0 by normalizing the I function ratios from zrati by the Wronskian.

ZXDistanceStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

zXMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian

Mask(unsigned byte) of the zero-crossings of the Laplacian of the gaussian.

zXMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep

Mask(unsigned byte) of the zero-crossings of the Laplacian of the gaussian.

zXMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression

DOCUMENT ME!

zXMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian

Mask(unsigned byte) of the zero-crossings of the Laplacian of the gaussian.

zXMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression

DOCUMENT ME!

ZY - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint

DOCUMENT ME!

ZYDistanceStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

zz_conj(SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

zz_mult(SuperLU.doublecomplex, SuperLU.doublecomplex, SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU

ZZDistanceStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

zzset - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping

_

__call__(double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.Tracker

__dbl_cmp_asc(double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

static compare functions for the Sort() function

__dbl_cmp_des(double[], double[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector

__edgeNeighbor(int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__edgeNeighbor(int[], int[], int[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__faceNeighbor(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__faceNeighbor(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__inf_norm(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

__inf_norm(double[][][]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

__ProcessFixedDepthNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, int, NodeAdjacencyFunction) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__ProcessMaxDepthNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, int, NodeAdjacencyFunction) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__ProcessNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, NodeAdjacencyFunction) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__processNodeEdges(OctNode, NodeAdjacencyFunction, int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__processNodeFaces(OctNode, NodeAdjacencyFunction, int[], int[], int[], int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__processNodeNodes(OctNode, NodeAdjacencyFunction) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__ProcessPointAdjacentNodes(int, int, int, OctNode, int, int, PointAdjacencyFunction) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

__ProcessTerminatingNodeAdjacentNodes(int, int, int, OctNode, int, OctNode, int, int, TerminatingNodeAdjacencyFunction) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode

_age - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_allowDecimalRepresentationOfRationals - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifDescriptorBase

Dictates whether rational values will be represented in decimal format in instances where decimal notation is elegant (such as 1/2 -> 0.5, but not 1/3).

_allowedBitDepths - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType

_array - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer

_array - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer

_baseOffset - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader

_baseOffset - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

_bayes_thresh(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

_bayes_thresh(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

_bitsPerSample - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_blueX - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_blueY - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_buffer - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader

_bytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunk

_bytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

_bytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

_bytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.StringValue

_call_(double[][], double[][][], boolean) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM

_charset - Variable in class gov.nih.mipav.model.file.MetadataExtractor.StringValue

_children - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode

_chunkLength - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

_chunks - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

_chunkType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunk

_circulant_multiply(double[][], double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_colorType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_componentId - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent

_componentSizeBytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

_compressionType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_compute_bef(double[], int) - Method in class gov.nih.mipav.model.algorithms.ImageQuality

_currentDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

_currentIndex - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

_custom_padd(int[], double[], int, int, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_czt(double[][], double[][], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_days - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_daysInMonth365 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DateUtil

_decTable1 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

Nikon decryption tables used in exiftool

_decTable2 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

_definedTagList - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

A convenient list holding tag values in the order in which they were stored.

_denominator - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Rational

Holds the denominator.

_description - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType

_descriptor - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

The descriptor used to interpret tag values.

_descriptor - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDescriptorTest

_descriptor - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

_descriptor - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

_desiredChunkTypes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader

_directories - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Metadata

The list of MetadataExtractor.Directory instances in this container, in the order they were added.

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Tag

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractor.TagDescriptor

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.DirectoryTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDescriptorTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.HuffmanTablesDirectoryTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.IptcDirectoryTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDescriptorTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDhtReaderTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegDirectoryTest

_directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.JpegReaderTest

_directoryStack - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

_drawGMM_BG(Vector<double[][]>, Vector<double[][][]>, GaussianMixtureModelsIncompleteSamples.GMM, double, String, GaussianMixtureModelsIncompleteSamples.Background, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_EM(double[], int[], double[], GaussianMixtureModelsIncompleteSamples.GMM, double[][], int[][], double[][][][], double[], double[][], double[][][], double[][][], String, int, String, GaussianMixtureModelsIncompleteSamples.Background, double[][], double, double, int, int, double, String, boolean[], boolean[], boolean[], Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_EMstep(double[], int[], double[], double[], GaussianMixtureModelsIncompleteSamples.GMM, double[][], int[][], double[][][][], double[], double, double[][], double[][][], double[][][], String, double[], int, String, GaussianMixtureModelsIncompleteSamples.Background, double[][], double, double, double, boolean[], boolean[], boolean[], int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_endGrid() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

_errorList - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

_Estep(GaussianMixtureModelsIncompleteSamples.GMM, double[][], int[][], double[][][][], double[], double[][], double[][][], double[][][], double[], GaussianMixtureModelsIncompleteSamples.Background, double[][], double, int, Random) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_Esum(double[][], double[][][][], int, int[][], GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double[][][], double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_exifIFD0Directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

_exifIFD0Directory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

_exifSubIFDDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

_exifSubIFDDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

_extensions - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

_ffi - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_ffp - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_fft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_file - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

_file - Variable in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException

_filterMethod - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_filters - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor

_filters - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDescriptor

_findSNMComponents(int[], boolean[], GaussianMixtureModelsIncompleteSamples.GMM, int[][], double[][], double[], double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_flags - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_flags - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

_floatFormatPattern - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

_fvi - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_fvp - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_greenX - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_greenY - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_height - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_hours - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_identifiersAllowingMultiples - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

_ifft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_imageHeight - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_imageWidth - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_index - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader

_inf_norm(double[][][], int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_inf_norm(double[][], int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_innerException - Variable in exception gov.nih.mipav.model.file.MetadataExtractor.CompoundException

_integrate(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

_interlaceMethod - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngHeader

_isMotorolaByteOrder - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessReader

_isMotorolaByteOrder - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader

_isStreamFinished - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

_JS(int, GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[], int[][], double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_key - Variable in class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair

_knots - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Subpath

_latin1Encoding - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader

_latin1Encoding - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest

_latitude - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation

_length - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessFileReader

_lengthBytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable

_lensTypeById - Variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor

Map from to string descriptions.

_line - Variable in exception gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException

_longitude - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GeoLocation

_longName - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

_loops_deconv(double[], double[], double[][], double, long, boolean, long, double) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_maxDepth - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie

_metadata - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

_metadata - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

_mimeType - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

_minutes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_months - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_Mstep(double[], double[][], double[][][], double[], GaussianMixtureModelsIncompleteSamples.GMM, int[][], double[][], double[][][][], double[], double[][], double[][][], double[][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_Msums(double[], double[][], double[][][], int, int[][], double[][], double[][][][], GaussianMixtureModelsIncompleteSamples.GMM, double[][], double[][][], double[]) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_multipleAllowed - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType

_n - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

_name - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_name - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.FileType

_name - Variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

_nextShell() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

_nikonDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

_nikonDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest1

_nikonDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

_numerator - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Rational

Holds the numerator.

_numericValue - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngColorType

_offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.DoubleArrayPointer

_offset - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.IntArrayPointer

_olympusExtenderTypes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor

_olympusLensTypes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor

_p - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

_padd_assymetric(double[][], int[], double, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_padd_assymetric(double[], int[], double, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_padd_symetric(double[][], int, double, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_padd_symetric(double[], int, double, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_panasonicDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.PanasonicMakernoteDescriptorTest

_parent - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

_pngChunkType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

_points - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Knot

_pos - Variable in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

_primes - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.RationalTest

_q - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_quantizationTableNumber - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent

_randomAccessFile - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest

_redX - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_redY - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_root - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie

_root3(double) - Method in class gov.nih.mipav.model.algorithms.Poly

_rootParentDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DirectoryTiffHandler

_samplingFactorByte - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegComponent

_sceneModes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor

_seconds - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_segmentDataMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData

_SIFT3D_extract_descriptors(SIFT3D.SIFT3DC, SIFT3D.Pyramid, SIFT3D.Keypoint_store, SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D

_sigma_est_dwt(double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.MultiGuidedFilter

_sigma_est_dwt(double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

_sign(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

_signal_model(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_skew_circulant_multiply(double[][], double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_soft(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets

_stream - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

_stream - Variable in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader

_streamLength - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RandomAccessStreamReader

_substitution - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyEncodedDataDirectoryBase

_tableClass - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable

_tableDestinationId - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable

_tableLength - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable

_tagMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Directory

Map of values hashed by type identifiers.

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.DuckyDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifIFD0Directory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifImageDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifInteropDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifSubIFDDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.FileSystemDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.FujifilmMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifAnimationDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifCommentDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifControlDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GifImageDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.GpsDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.IccDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.IptcDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JfxxDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegCommentDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.KodakMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.KyoceraMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.LeicaType5MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType1MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.NikonType2MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusFocusInfoMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusImageProcessingMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopment2MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawDevelopmentMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusRawInfoMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawDistortionDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawIFD0Directory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfo2Directory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicRawWbInfoDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PentaxMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PhotoshopDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticitiesDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PrintIMDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PsdHeaderDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFire2MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxHyperFireMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ReconyxUltraFireMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.RicohMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SamsungType2MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SanyoMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SigmaMakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyTag9050bDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType1MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractor.SonyType6MakernoteDirectory

_tagNameMap - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.MockDirectory

_tagType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Tag

_tempFile - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.RandomAccessFileReaderTest

_test_conv_adj_fourier_hrf(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_conv_adj_toeplitz_kernel_hrf(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_conv_adj_toeplitz_kernel_signal(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_conv_fourier_kernel_hrf(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_conv_toeplitz_kernel_hrf(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_conv_toeplitz_kernel_signal(double[], double[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_test_data(double[], double[], double[], double[], double[], double[], double, int, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_thumbDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType1MakernoteTest

_thumbDirectory - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.NikonType2MakernoteTest2

_tiffFormatCode - Variable in class gov.nih.mipav.model.file.MetadataExtractor.TiffDataFormat

_toeplitz_mult_ce(double[][], double[][], double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_toeplitz_mult_pd(double[][], double[][], double[][], String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform

_toneLevelType - Variable in class gov.nih.mipav.model.file.MetadataExtractor.OlympusCameraSettingsMakernoteDescriptor

_type - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Knot

_type - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Subpath

_unpadd_assymetric(double[][], int[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_unpadd_assymetric(double[], int[], String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_unpadd_symetric(double[][], int, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_unpadd_symetric(double[], int, String) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

_update(GaussianMixtureModelsIncompleteSamples.GMM, double[], double[][], double[][][], int[], double[], double[], double[][], double[][][], double[], double[], double, boolean[], boolean[], boolean[], GaussianMixtureModelsIncompleteSamples.Background) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_update_snm(GaussianMixtureModelsIncompleteSamples.GMM, int[], int[][], double, boolean) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples

_UpdateRadius() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.ClosestIterator

_value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode

_value - Variable in class gov.nih.mipav.model.file.MetadataExtractor.KeyValuePair

_valueBytes - Variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable

_vfb - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

_vfi - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex

_vl_covdet_check_frame_inside(Covdet.VlCovDet, Covdet.VlFrameOrientedEllipse, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_covdet_compare_orientations_descending(Covdet.VlCovDetFeatureOrientation, Covdet.VlCovDetFeatureOrientation) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_det_hessian_response(float[], int, float[], int, int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_dog_response(float[], int, float[], int, float[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_harris_response(float[], int, float[], int, int, int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_new_gaussian_fitler_f(int[], double) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_scalespace_fill_octave(Covdet.VlScaleSpace, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_scalespace_start_octave_from_image(Covdet.VlScaleSpace, float[], int) - Method in class gov.nih.mipav.model.algorithms.Covdet

------------------------------------------------------------------

_vl_scalespace_start_octave_from_previous_octave(Covdet.VlScaleSpace, int) - Method in class gov.nih.mipav.model.algorithms.Covdet

_vl_sift_smooth(SIFT.VlSiftFilt, float[], int, float[], float[], int, int, int, double) - Method in class gov.nih.mipav.model.algorithms.SIFT

------------------------------------------------------------------

_vl_svm_evaluate(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

_vl_svm_sdca_train(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

_vl_svm_sgd_train(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

_vl_svm_update_statistics(SVM.VlSvm) - Method in class gov.nih.mipav.model.algorithms.SVM

_whitePointX - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_whitePointY - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChromaticities

_width - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_wn - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face

_x - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_y - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Face

_years - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Age

_yield_data(double[][], double[][], double[][], double[][], double[][], double[][], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution

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